Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
PLEKHG5	57449	hgsc.bcm.edu	hg19	1	6556604	6556604	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	PLEKHG5	NM_001265592	exon2	c.G99A	p.K33K	CAGTCCCTTCTTT	.	214.0	82.0	174.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
KAZN	23254	hgsc.bcm.edu	hg19	1	15438985	15438985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	KAZN	NM_201628	exon14	c.C2111T	p.T704M	GCGTCACGCGGGC	.	349.0	137.0	284.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
XPR1	9213	hgsc.bcm.edu	hg19	1	180843044	180843044	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	XPR1	NM_004736	exon13	c.A1774C	p.I592L	GACATCATTGCTA	.	72.0	32.0	74.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
SYT2	127833	hgsc.bcm.edu	hg19	1	202572220	202572220	+	Silent	SNP	C	C	G	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	SYT2	NM_177402	exon4	c.G372C	p.L124L	CTCAGTCAGGCCT	.	100.0	41.0	68.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
ADAM17	6868	hgsc.bcm.edu	hg19	2	9666345	9666345	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	ADAM17	NM_003183	exon6	c.T648C	p.A216A	TGGGTCAGCTCTT	.	77.0	21.0	54.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
ARID5A	10865	hgsc.bcm.edu	hg19	2	97217448	97217448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	ARID5A	NM_212481	exon7	c.C1183A	p.R395S	GCTAACCGCCCTT	.	159.0	64.0	153.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
BOLL	66037	hgsc.bcm.edu	hg19	2	198643755	198643755	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	BOLL	NM_197970	exon3	c.G201A	p.Q67Q	CCCATACTGGGAA	.	79.0	32.0	73.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
CCR9	10803	hgsc.bcm.edu	hg19	3	45942933	45942933	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	CCR9	NM_031200	exon3	c.A653T	p.K218M	CCCTGAAGGTCAT	.	124.0	51.0	86.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
CEP135	9662	hgsc.bcm.edu	hg19	4	56818348	56818348	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	CEP135	NM_025009	exon2	c.C52T	p.Q18X	CTGGATCAGCTGG	.	463.0	172.0	413.0	0.0	.	115	.	.	.	none	.	.	PASS	Atlas-SNP
RPS3A	6189	hgsc.bcm.edu	hg19	4	152021725	152021725	+	Silent	SNP	A	A	C	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	RPS3A	NM_001006	exon2	c.A151C	p.R51R	GTCACCAGGACCC	.	72.0	33.0	45.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
RXFP1	59350	hgsc.bcm.edu	hg19	4	159573058	159573058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	RXFP1,NS,carcinoma,0,1	RXFP1	NM_001253727	exon18	c.G2206T	p.G736C	AGCAAAGGTCAGA	.	82.0	30.0	97.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
SGTB	54557	hgsc.bcm.edu	hg19	5	65016544	65016544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	SGTB	NM_019072	exon2	c.A91G	p.S31G	CCAAACTTTCTTG	.	103.0	49.0	73.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
OTP	23440	hgsc.bcm.edu	hg19	5	76926470	76926470	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	OTP	NM_032109	exon3	c.G597A	p.L199L	AGAGCACAGGCTG	.	61.0	23.0	46.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
ZFYVE16	9765	hgsc.bcm.edu	hg19	5	79743873	79743873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	ZFYVE16	NM_001105251	exon8	c.C2753T	p.S918F	CCCATTCTACTAC	.	116.0	43.0	117.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
MRS2	57380	hgsc.bcm.edu	hg19	6	24423170	24423170	+	Silent	SNP	T	T	C	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	MRS2	NM_020662	exon10	c.T1113C	p.H371H	GGACCATAGAATT	.	47.0	16.0	54.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
OPRM1	4988	hgsc.bcm.edu	hg19	6	154360579	154360579	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	OPRM1	NM_001145279	exon3	c.T179A	p.L60Q	AGGAGCTGTGGCA	.	86.0	33.0	68.0	0.0	.	241	.	.	.	none	.	.	PASS	Atlas-SNP
CNKSR3	154043	hgsc.bcm.edu	hg19	6	154732219	154732219	+	Silent	SNP	A	A	C	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	CNKSR3	NM_173515	exon11	c.T1128G	p.P376P	AGGACCAGGCAAT	.	119.0	48.0	78.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
FGFR1OP	11116	hgsc.bcm.edu	hg19	6	167438317	167438317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	FGFR1OP	NM_007045	exon9	c.A854G	p.D285G	TCTCGGATGCACC	.	285.0	119.0	243.0	1.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
AEBP1	165	hgsc.bcm.edu	hg19	7	44150559	44150559	+	Silent	SNP	C	C	A	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	AEBP1	NM_001129	exon13	c.C1533A	p.L511L	TGAGCTCCCAGAG	.	134.0	80.0	88.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
PTPN12	5782	hgsc.bcm.edu	hg19	7	77256523	77256523	+	Silent	SNP	T	T	A	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	PTPN12	NM_002835	exon13	c.T1527A	p.T509T	AGTTACTCCACCA	.	217.0	124.0	103.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC132	55610	hgsc.bcm.edu	hg19	7	92885845	92885845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	CCDC132	NM_024553	exon5	c.A322G	p.I108V	GATTTAATCCTTG	.	93.0	20.0	58.0	0.0	.	136	.	.	.	none	.	.	PASS	Atlas-SNP
TMUB1	83590	hgsc.bcm.edu	hg19	7	150779559	150779559	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	TMUB1	NM_031434	exon2	c.C92G	p.T31R	GTGTGCGTTGAGA	.	201.0	118.0	131.0	0.0	.	7	.	.	.	none	.	.	PASS	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	hg19	7	151853289	151853289	+	Splice_Site	SNP	C	C	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	MLL3	NM_170606	exon46	c.11812+1G>A	.	ATCATACCTTCAT	.	81.0	52.0	68.0	0.0	.	1564	.	.	.	none	.	.	PASS	Atlas-SNP
SORBS3	10174	hgsc.bcm.edu	hg19	8	22432205	22432205	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	SORBS3	NM_005775	exon21	c.C1980T	p.F660F	GAAATTCGGAACG	.	115.0	47.0	83.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
GSR	2936	hgsc.bcm.edu	hg19	8	30537066	30537066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	GSR	NM_000637	exon13	c.T1540C	p.S514P	CTGAAGAGGTAGG	.	120.0	46.0	104.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
RORB	6096	hgsc.bcm.edu	hg19	9	77300383	77300383	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	RORB	NM_006914	exon10	c.T1229A	p.I410K	AGTTAATAGCCAA	.	86.0	37.0	64.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	hg19	9	84609332	84609332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	FAM75D4,NS,carcinoma,0,2	.	NM_001001670	exon4	c.G3947A	p.R1316H	CCCAACGCAGGAG	.	123.0	50.0	129.0	1.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
IARS	3376	hgsc.bcm.edu	hg19	9	95027351	95027351	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	IARS	NM_013417	exon16	c.C1560T	p.I520I	TTCAGAGATGCGG	.	157.0	62.0	140.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
FAM73B	84895	hgsc.bcm.edu	hg19	9	131832215	131832215	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	FAM73B	NM_032809	exon15	c.C1546T	p.Q516X	AAGCCTCAGCTTG	.	60.0	16.0	60.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
RAPGEF1	2889	hgsc.bcm.edu	hg19	9	134464315	134464315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	RAPGEF1	NM_198679	exon17	c.G2422A	p.V808M	TGCACACCAGGCG	.	74.0	35.0	41.0	0.0	.	126	.	.	.	none	.	.	PASS	Atlas-SNP
PTEN	5728	hgsc.bcm.edu	hg19	10	89653783	89653783	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	PTEN,colon,carcinoma,+1,2	PTEN	NM_000314	exon2	c.T81A	p.Y27X	CTCAGATATTTAT	.	69.0	55.0	52.0	0.0	.	3652	.	.	.	none	.	.	PASS	Atlas-SNP
EEF1G	1937	hgsc.bcm.edu	hg19	11	62327757	62327757	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	EEF1G	NM_001404	exon8	c.A1027T	p.T343S	TACCAGTGATGAG	.	107.0	39.0	108.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
GPR152	390212	hgsc.bcm.edu	hg19	11	67219103	67219103	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	GPR152	NM_206997	exon1	c.C1093G	p.Q365E	GTGGCTGGAGTGT	.	55.0	23.0	49.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
KRTAP5-8	57830	hgsc.bcm.edu	hg19	11	71249532	71249532	+	Missense_Mutation	SNP	C	C	G	rs11234084		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	KRTAP5-8	NM_021046	exon1	c.C431G	p.S144C	GCTGTTCCCAGTC	.	99.0	6.0	66.0	0.0	.	28	.	.	.	weak	.	.	PASS	Atlas-SNP
HSPA8	3312	hgsc.bcm.edu	hg19	11	122930962	122930962	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	HSPA8	NM_006597	exon4	c.T426C	p.A142A	GACCACAGCATTG	.	35.0	19.0	28.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
EPS8	2059	hgsc.bcm.edu	hg19	12	15776128	15776128	+	Silent	SNP	G	G	C	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	EPS8	NM_004447	exon20	c.C2319G	p.V773V	GCTATAGACTCTC	.	149.0	81.0	60.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
PDZRN4	29951	hgsc.bcm.edu	hg19	12	41966314	41966314	+	Missense_Mutation	SNP	A	A	T	rs370916106	alternate_allele	TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	PDZRN4	NM_001164595	exon10	c.A1733T	p.N578I	ACCCCAATAGCAC	.	291.0	82.0	187.0	0.0	.	346	.	.	.	alt	.	.	PASS	Atlas-SNP
TARBP2	6895	hgsc.bcm.edu	hg19	12	53899550	53899550	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	TARBP2	NM_134323	exon8	c.C859T	p.L287L	GGCTCCCTGGGTG	.	77.0	17.0	57.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
NAV3	89795	hgsc.bcm.edu	hg19	12	78516178	78516178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	NAV3,NS,carcinoma,0,2	NAV3	NM_014903	exon16	c.C4208T	p.T1403M	TGAGAACGGGTAG	.	60.0	5.0	36.0	0.0	.	506	.	.	.	none	.	.	PASS	Atlas-SNP
NUPL1	9818	hgsc.bcm.edu	hg19	13	25895072	25895072	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	NUPL1	NM_014089	exon9	c.G792C	p.E264D	GAAGGAGCAGAAA	.	87.0	32.0	88.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
MYO16	23026	hgsc.bcm.edu	hg19	13	109379841	109379841	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	MYO16	NM_001198950	exon4	c.C417T	p.V139V	AGGAGTCAACGTC	.	116.0	50.0	81.0	0.0	.	285	.	.	.	none	.	.	PASS	Atlas-SNP
SLC7A7	9056	hgsc.bcm.edu	hg19	14	23242825	23242825	+	Silent	SNP	A	A	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	SLC7A7	NM_001126105	exon11	c.T1530A	p.S510S	TTAGTTAGATTTG	.	88.0	41.0	89.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
HECTD1	25831	hgsc.bcm.edu	hg19	14	31604218	31604218	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	HECTD1	NM_015382	exon22	c.A3438G	p.I1146M	TGATGGTATCACC	.	117.0	44.0	123.0	0.0	.	159	.	.	.	none	.	.	PASS	Atlas-SNP
DMXL2	23312	hgsc.bcm.edu	hg19	15	51783940	51783940	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	DMXL2	NM_001174116	exon20	c.C4788T	p.V1596V	TGTAGAGACACCT	.	63.0	29.0	65.0	0.0	.	262	.	.	.	none	.	.	PASS	Atlas-SNP
ALPK3	57538	hgsc.bcm.edu	hg19	15	85360356	85360356	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	ALPK3	NM_020778	exon1	c.C279T	p.C93C	CCGCTGCGCCTTC	.	74.0	24.0	75.0	0.0	.	289	.	.	.	none	.	.	PASS	Atlas-SNP
ANPEP	290	hgsc.bcm.edu	hg19	15	90340878	90340878	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	ANPEP	NM_001150	exon15	c.G2085T	p.W695C	GGCCTCCCAGGGC	.	145.0	70.0	96.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
ANPEP	290	hgsc.bcm.edu	hg19	15	90349261	90349261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	ANPEP	NM_001150	exon2	c.A554G	p.E185G	GCCAACTCCCCCT	.	42.0	20.0	33.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
NUDT16L1	84309	hgsc.bcm.edu	hg19	16	4745104	4745104	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	NUDT16L1	NM_032349	exon3	c.A560G	p.K187R	AGGAGAAGCTGGT	.	129.0	32.0	59.0	0.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
GFOD2	81577	hgsc.bcm.edu	hg19	16	67719468	67719468	+	Missense_Mutation	SNP	C	C	T	rs145155253		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	GFOD2	NM_001243650	exon2	c.G151A	p.A51T	AGAAGGCGATGTT	.	96.0	28.0	58.0	0.0	.	36	.	.	.	weak	C|1.000;T|0.000	0.000	PASS	Atlas-SNP
SMG6	23293	hgsc.bcm.edu	hg19	17	1989066	1989066	+	Missense_Mutation	SNP	T	T	C	rs369806279		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	SMG6	NM_017575	exon14	c.A3487G	p.M1163V	TTCCCATGGTGTC	.	123.0	11.0	95.0	0.0	.	97	.	.	.	weak	.	.	PASS	Atlas-SNP
RAI1	10743	hgsc.bcm.edu	hg19	17	17699195	17699195	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	RAI1	NM_030665	exon3	c.A2933T	p.K978M	CCAACAAGCCTGC	.	59.0	25.0	27.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
FAM83G	644815	hgsc.bcm.edu	hg19	17	18882130	18882130	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	FAM83G	NM_001039999	exon5	c.T849C	p.N283N	GATCACATTCCGG	.	158.0	73.0	165.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0100	9703	hgsc.bcm.edu	hg19	17	26961608	26961608	+	Silent	SNP	A	A	G	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	KIAA0100,NS,carcinoma,0,1	KIAA0100	NM_014680	exon16	c.T2997C	p.P999P	GGGAAAAGGGCTG	.	97.0	4.0	79.0	0.0	.	175	.	.	.	none	.	.	PASS	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	hg19	17	39240791	39240791	+	Silent	SNP	C	C	G	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	KRTAP4-9_ENST00000377734,NS,carcinoma,0,2	KRTAP4-7	NM_033061	exon1	c.C333G	p.R111R	CTGCCGCCCCAGC	.	42.0	6.0	19.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
KRT34	3885	hgsc.bcm.edu	hg19	17	39538610	39538610	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	KRT34	NM_021013	exon1	c.G15A	p.K5K	TGGGGGCTTGGCA	.	152.0	58.0	89.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
ATCAY	85300	hgsc.bcm.edu	hg19	19	3907799	3907799	+	Silent	SNP	G	G	C	rs373080859	alternate_allele	TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	ATCAY	NM_033064	exon5	c.G426C	p.T142T	CGGCACGACGGAG	.	257.0	114.0	208.0	0.0	.	84	.	.	.	alt	.	.	PASS	Atlas-SNP
BRD4	23476	hgsc.bcm.edu	hg19	19	15354087	15354087	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	BRD4	NM_058243	exon14	c.C2793T	p.Y931Y	CTGCAGGTACAGC	.	32.0	18.0	44.0	0.0	.	172	.	.	.	none	.	.	PASS	Atlas-SNP
GYS1	2997	hgsc.bcm.edu	hg19	19	49489290	49489290	+	Silent	SNP	G	G	A	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	GYS1	NM_002103	exon4	c.C495T	p.F165F	TGCCAGGAACTGT	.	43.0	14.0	46.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
PPFIA3	8541	hgsc.bcm.edu	hg19	19	49652538	49652538	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	PPFIA3	NM_003660	exon27	c.T3310G	p.F1104V	AAGGAATTCAGCA	.	167.0	68.0	168.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
TSHZ2	128553	hgsc.bcm.edu	hg19	20	51871547	51871547	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	TSHZ2	NM_173485	exon2	c.T1550G	p.L517W	ACATTTTGAAATC	.	126.0	66.0	98.0	0.0	.	209	.	.	.	none	.	.	PASS	Atlas-SNP
NELFCD	51497	hgsc.bcm.edu	hg19	20	57568776	57568776	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	.	NM_198976	exon13	c.A1592T	p.K531M	TGGAGAAGCTGGA	.	74.0	35.0	80.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
RBBP8NL	140893	hgsc.bcm.edu	hg19	20	60992327	60992327	+	Silent	SNP	C	C	A	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	.	NM_080833	exon4	c.G153T	p.R51R	CTGTTCCCGGAGC	.	46.0	17.0	59.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
PTK6	5753	hgsc.bcm.edu	hg19	20	62168575	62168575	+	Silent	SNP	C	C	T	rs370151198		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	PTK6	NM_001256358	exon1	c.G93A	p.A31A	GTCCCCCGCGCGG	.	69.0	20.0	76.0	0.0	.	33	.	.	.	weak	.	.	PASS	Atlas-SNP
ZBTB21	49854	hgsc.bcm.edu	hg19	21	43411959	43411959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	.	NM_001098402	exon3	c.T2246C	p.V749A	GGGCAGACGGCCG	.	79.0	38.0	59.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
PIM3	415116	hgsc.bcm.edu	hg19	22	50354605	50354605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	PIM3	NM_001001852	exon1	c.T10C	p.S4P	CTGCTCTCCAAGT	.	16.0	8.0	11.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
MAGEB16	139604	hgsc.bcm.edu	hg19	X	35821036	35821036	+	Silent	SNP	C	C	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	MAGEB16	NM_001099921	exon2	c.C723T	p.F241F	GCACTTCATCTTT	.	309.0	142.0	255.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66765152	66765152	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	AR	NM_000044	exon1	c.T164A	p.L55Q	GTTTGCTGCTGCT	.	278.0	13.0	217.0	0.0	.	249	.	.	.	none	.	.	PASS	Atlas-SNP
ATP7A	538	hgsc.bcm.edu	hg19	X	77254011	77254011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	ATP7A	NM_000052	exon5	c.C1373T	p.S458L	AGCCTTCATCGGA	.	286.0	115.0	293.0	0.0	.	248	.	.	.	none	.	.	PASS	Atlas-SNP
SEC24B	10427	hgsc.bcm.edu	hg19	4	110433149	110433169	+	In_Frame_Del	DEL	TGCCGATCCTGTCGAACGTAT	TGCCGATCCTGTCGAACGTAT	-	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	TGCCGATCCTGTCGAACGTAT	TGCCGATCCTGTCGAACGTAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	SEC24B	NM_006323	exon9	c.1812_1832del	p.604_611del	.	.	70.0	15.0	104.0	0.0	.	186	.	0.214286	0	none	.	.	PASS	Atlas-Indel,Pindel
ST8SIA2	8128	hgsc.bcm.edu	hg19	15	92981704	92981704	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	ST8SIA2	NM_006011	exon4	c.411delG	p.Q137fs	.	.	155.0	54.0	123.0	0.0	.	41	.	0.348387	0	none	.	.	PASS	Atlas-Indel,Pindel
PCMT1	5110	hgsc.bcm.edu	hg19	6	150070882	150070883	+	In_Frame_Ins	INS	-	-	GCGGCA	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	PCMT1	NM_001252050	exon1	c.19_20insGCGGCA	p.G7delinsGGS	.	.	47.0	13.0	28.0	0.0	.	27	.	0.276596	0	none	.	.	PASS	Atlas-Indel,Pindel
FNIP2	57600	hgsc.bcm.edu	hg19	4	159753052	159753054	+	In_Frame_Del	DEL	ATG	ATG	-	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	ATG	ATG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	FNIP2	NM_020840	exon4	c.420_422del	p.140_141del	.	.	151.0	60.0	135.0	0.0	.	90	.	0.397351	0	none	.	.	PASS	Atlas-Indel,Pindel
ACVR2A	92	hgsc.bcm.edu	hg19	2	148683732	148683732	+	Splice_Site	DEL	T	T	-	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.,1	ACVR2A	NM_001616	exon10	c.1347+1T>-	.	.	.	70.0	22.0	66.0	0.0	.	125	.	0.314286	0	none	.	.	PASS	Atlas-Indel,Pindel
C11orf63	79864	hgsc.bcm.edu	hg19	11	122830003	122830007	+	Frame_Shift_Del	DEL	GACTC	GACTC	-	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	GACTC	GACTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	C11orf63	NM_024806	exon9	c.2186_2190del	p.729_730del	.	.	289.0	118.0	283.0	0.0	.	116	.	0.408305	0	none	.	.	PASS	Atlas-Indel,Pindel
ADAMTS7	11173	hgsc.bcm.edu	hg19	15	79088990	79088991	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	ADAMTS7	NM_014272	exon4	c.761_762insA	p.M254fs	.	.	75.0	34.0	70.0	0.0	.	142	.	0.453333	0	none	.	.	PASS	Atlas-Indel,Pindel
ARHGAP32	9743	hgsc.bcm.edu	hg19	11	128840378	128840379	+	Frame_Shift_Ins	INS	-	-	AGCTCAAAGA	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	ARHGAP32	NM_001142685	exon22	c.4688_4689insTCTTTGAGCT	p.S1563fs	.	.	133.0	21.0	135.0	0.0	.	307	.	0.157895	0	none	.	.	PASS	Atlas-Indel,Pindel
FLNB	2317	hgsc.bcm.edu	hg19	3	58104719	58104719	+	Splice_Site	DEL	A	A	-	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	FLNB	NM_001164317	exon19	c.2863+2A>-	.	.	.	210.0	114.0	134.0	0.0	.	430	.	0.542857	0	none	.	.	PASS	Atlas-Indel,Pindel
OR7A10	390892	hgsc.bcm.edu	hg19	19	14952156	14952157	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	OR7A10	NM_001005190	exon1	c.534_535insT	p.F178fs	.	.	181.0	68.0	140.0	0.0	.	33	.	0.375691	0	none	.	.	PASS	Atlas-Indel,Pindel
ATP6V1C2	245973	hgsc.bcm.edu	hg19	2	10922432	10922436	+	Frame_Shift_Del	DEL	GCGTT	GCGTT	-	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	GCGTT	GCGTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	ATP6V1C2	NM_001039362	exon13	c.1124_1128del	p.375_376del	.	.	103.0	32.0	123.0	0.0	.	73	.	0.31068	0	none	.	.	PASS	Atlas-Indel,Pindel
PTH1R	5745	hgsc.bcm.edu	hg19	3	46935466	46935467	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	PTH1R	NM_001184744	exon3	c.145_146insA	p.E49fs	.	.	281.0	86.0	190.0	0.0	.	49	.	0.306	.	none	.	.	PASS	Pindel
STEAP4	79689	hgsc.bcm.edu	hg19	7	87913338	87913349	+	In_Frame_Del	DEL	TGTGGATTGCTA	TGTGGATTGCTA	-	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	TGTGGATTGCTA	TGTGGATTGCTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	STEAP4	NM_001205315	exon3	c.237_248del	p.79_83del	.	.	131.0	18.0	80.0	0.0	.	54	.	0.137	.	none	.	.	PASS	Pindel
ZNF597	146434	hgsc.bcm.edu	hg19	16	3487452	3487453	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	ZNF597	NM_152457	exon4	c.247_248insT	p.A83fs	.	.	121.0	43.0	91.0	0.0	.	41	.	0.355	.	none	.	.	PASS	Pindel
MORF4L2	9643	hgsc.bcm.edu	hg19	X	102931211	102931211	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	MORF4L2	NM_001142422	exon5	c.746delT	p.L249fs	.	.	292.0	76.0	234.0	0.0	.	35	.	0.260	.	none	.	.	PASS	Pindel
OR4F5	79501	hgsc.bcm.edu	hg19	1	69618	69629	+	In_Frame_Del	DEL	GGTAATCAAACT	GGTAATCAAACT	-	novel		TCGA-UZ-A9Q1-01A-11D-A42J-10	TCGA-UZ-A9Q1-10A-01D-A42M-10	GGTAATCAAACT	GGTAATCAAACT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	69f0f324-fc06-44ab-b056-8fb3fb4706ae	1a85c2bb-8b95-429a-b782-c05a44345d4c	.	OR4F5	NM_001005484	exon1	c.527_538del	p.176_180del	.	.	365.0	20.0	276.0	0.0	.	7	.	0.055	.	none	.	.	PASS	Pindel
