Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
MMEL1	79258	hgsc.bcm.edu	hg19	1	2560821	2560821	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	MMEL1	NM_033467	exon2	c.C103G	p.L35V	TCACCAGCAGCAG	.	211.0	10.0	137.0	0.0	.	64	.	.	.	none	.	.	PASS	Atlas-SNP
RNF19B	127544	hgsc.bcm.edu	hg19	1	33429684	33429684	+	Silent	SNP	G	G	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	RNF19B	NM_001127361	exon1	c.C603A	p.P201P	GCAGTCGGGGTCC	.	94.0	44.0	85.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
MOV10	4343	hgsc.bcm.edu	hg19	1	113237494	113237494	+	Silent	SNP	C	C	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	MOV10	NM_020963	exon10	c.C1596A	p.V532V	GACTGTCACGTTA	.	202.0	86.0	139.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
LCE4A	199834	hgsc.bcm.edu	hg19	1	152681689	152681689	+	Silent	SNP	G	G	C	rs200223098	bycluster	TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.,2	LCE4A	NM_178356	exon1	c.G138C	p.G46G	CTCTGGGGGCTGT	.	241.0	66.0	132.0	0.0	.	37	.	.	.	weak	G|0.999;C|0.001	0.001	PASS	Atlas-SNP
RGS4	5999	hgsc.bcm.edu	hg19	1	163039075	163039075	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	RGS4	NM_001102445	exon2	c.G92C	p.G31A	GAGCTGGTACTGC	.	231.0	105.0	141.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
GREB1	9687	hgsc.bcm.edu	hg19	2	11725936	11725936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	GREB1	NM_148903	exon9	c.C1064T	p.A355V	GACCAGCTTCAGT	.	178.0	79.0	133.0	0.0	.	308	.	.	.	none	.	.	PASS	Atlas-SNP
RGPD4	285190	hgsc.bcm.edu	hg19	2	108488143	108488143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	RGPD4	NM_182588	exon20	c.C3683T	p.A1228V	CAGGTGCGGCCGG	.	227.0	92.0	141.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
PSD4	23550	hgsc.bcm.edu	hg19	2	113956437	113956437	+	Silent	SNP	C	C	A	rs369985754	alternate_allele	TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	PSD4	NM_012455	exon15	c.C2745A	p.P915P	CCTGCCCGTGGGC	.	52.0	31.0	44.0	0.0	.	74	.	.	.	alt	.	.	PASS	Atlas-SNP
METTL21A	151194	hgsc.bcm.edu	hg19	2	208486600	208486600	+	Silent	SNP	C	C	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	METTL21A	NM_145280	exon3	c.G189A	p.E63E	CCTGAGCTCCACA	.	161.0	11.0	128.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
ESPNL	339768	hgsc.bcm.edu	hg19	2	239039152	239039152	+	Silent	SNP	G	G	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	ESPNL	NM_194312	exon9	c.G1797A	p.L599L	CCGCCTGGTACGC	.	119.0	62.0	105.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
ESPNL	339768	hgsc.bcm.edu	hg19	2	239039153	239039153	+	Missense_Mutation	SNP	G	G	T	rs199652360	by1000genomes;alternate_allele	TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	ESPNL	NM_194312	exon9	c.G1798T	p.V600L	CGCCTGGTACGCA	.	122.0	64.0	106.0	0.0	.	63	.	.	.	alt	G|1.000;C|0.000	.	PASS	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	hg19	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	KIF1A	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	150.0	12.0	86.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
FBLN2	2199	hgsc.bcm.edu	hg19	3	13611885	13611885	+	Silent	SNP	C	C	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	FBLN2	NM_001998	exon2	c.C30A	p.A10A	AGGAGCCTGGCTT	.	83.0	44.0	47.0	0.0	.	137	.	.	.	none	.	.	PASS	Atlas-SNP
MON1A	84315	hgsc.bcm.edu	hg19	3	49949382	49949382	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	MON1A	NM_032355	exon3	c.G481T	p.E161X	CATCCTCTGACTC	.	106.0	47.0	70.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
C3orf38	285237	hgsc.bcm.edu	hg19	3	88205465	88205465	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	C3orf38	NM_173824	exon3	c.T670A	p.C224S	CTGAAATGTGCAT	.	164.0	80.0	75.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA2018	205717	hgsc.bcm.edu	hg19	3	113377181	113377181	+	Silent	SNP	T	T	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	KIAA2018	NM_001009899	exon7	c.A3348T	p.A1116A	AGTTGTTGCATTG	.	92.0	48.0	55.0	0.0	.	180	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF148	7707	hgsc.bcm.edu	hg19	3	125032253	125032253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	ZNF148	NM_021964	exon4	c.G232A	p.D78N	GTTCATCATGTGA	.	152.0	72.0	83.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
PSMD2	5708	hgsc.bcm.edu	hg19	3	184025149	184025149	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	PSMD2	NM_002808	exon17	c.G2039C	p.R680T	AGCTGAGATATGG	.	75.0	42.0	56.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195505805	195505805	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	MUC4	NM_018406	exon2	c.T12646G	p.S4216A	ATGCTGAGGAAGT	.	146.0	8.0	114.0	0.0	.	1505	.	.	.	none	.	.	PASS	Atlas-SNP
GALNTL6	442117	hgsc.bcm.edu	hg19	4	173961238	173961238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	GALNTL6	NM_001034845	exon13	c.A1793G	p.H598R	ACCACCATGCCAA	.	98.0	48.0	90.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
GALNT7	51809	hgsc.bcm.edu	hg19	4	174239640	174239640	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	GALNT7	NM_017423	exon11	c.G1766C	p.G589A	CAAAGGGAGCTGA	.	205.0	99.0	156.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
TENM3	55714	hgsc.bcm.edu	hg19	4	183245238	183245238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	.	NM_001080477	exon1	c.G65A	p.R22H	AACGGCGCTACAC	.	129.0	65.0	97.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
TLR3	7098	hgsc.bcm.edu	hg19	4	187004353	187004353	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	TLR3	NM_003265	exon4	c.C1513A	p.L505I	CAGCCTCTTCGTA	.	152.0	63.0	111.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
PCDHB2	56133	hgsc.bcm.edu	hg19	5	140476411	140476411	+	Silent	SNP	A	A	C	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	PCDHB2,NS,carcinoma,0,1	PCDHB2	NM_018936	exon1	c.A2037C	p.A679A	GGCGGCACCGGCC	.	127.0	7.0	66.0	1.0	.	163	.	.	.	none	.	.	PASS	Atlas-SNP
DCTN4	51164	hgsc.bcm.edu	hg19	5	150133041	150133041	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	DCTN4	NM_016221	exon3	c.G385T	p.A129S	ACTCACCTACAGA	.	66.0	30.0	48.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
ITK	3702	hgsc.bcm.edu	hg19	5	156671455	156671455	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	ITK	NM_005546	exon13	c.C1416A	p.Y472X	GGCCTACCTGGAA	.	80.0	41.0	46.0	0.0	.	136	.	.	.	none	.	.	PASS	Atlas-SNP
FLT4	2324	hgsc.bcm.edu	hg19	5	180045796	180045796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	FLT4	NM_182925	exon21	c.C2975T	p.A992V	CGCCTCGCTCCGC	.	88.0	47.0	71.0	0.0	.	356	.	.	.	none	.	.	PASS	Atlas-SNP
TJAP1	93643	hgsc.bcm.edu	hg19	6	43466745	43466745	+	Silent	SNP	T	T	C	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	TJAP1	NM_080604	exon4	c.T6C	p.T2T	AATGACTAGTGCC	.	69.0	40.0	30.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
STX11	8676	hgsc.bcm.edu	hg19	6	144508308	144508308	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	STX11	NM_003764	exon2	c.G544T	p.E182X	ATGTTCGAGCAGG	.	118.0	61.0	109.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
PLEKHG1	57480	hgsc.bcm.edu	hg19	6	151054930	151054930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	PLEKHG1	NM_001029884	exon3	c.G113A	p.S38N	CAAATAGCCACAT	.	118.0	59.0	82.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
RSPH3	83861	hgsc.bcm.edu	hg19	6	159420999	159420999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	RSPH3	NM_031924	exon1	c.A10G	p.K4E	CTGGCTTGACCGT	.	175.0	82.0	104.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
CAMK2B	816	hgsc.bcm.edu	hg19	7	44268995	44268995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	CAMK2B	NM_001220	exon18	c.C1331A	p.P444Q	GGGGCTGGCAGGG	.	456.0	231.0	314.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
STEAP4	79689	hgsc.bcm.edu	hg19	7	87912402	87912402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	STEAP4	NM_001205315	exon4	c.C538A	p.Q180K	ATCCTTGATCCAT	.	101.0	57.0	78.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
LAMB1	3912	hgsc.bcm.edu	hg19	7	107577548	107577548	+	Silent	SNP	T	T	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	LAMB1	NM_002291	exon26	c.A3936T	p.S1312S	AATATCTGAGTTT	.	101.0	50.0	78.0	0.0	.	185	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF395	55893	hgsc.bcm.edu	hg19	8	28209284	28209284	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	ZNF395	NM_018660	exon7	c.T961G	p.F321V	AGTAGAAATCCTC	.	14.0	7.0	7.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	hg19	8	110477416	110477416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	PKHD1L1	NM_177531	exon49	c.G8355T	p.K2785N	GAACAAGGCTGGC	.	185.0	83.0	125.0	0.0	.	522	.	.	.	none	.	.	PASS	Atlas-SNP
FAM91A1	157769	hgsc.bcm.edu	hg19	8	124786386	124786386	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	FAM91A1	NM_144963	exon2	c.C139T	p.R47X	CAGTTACGATATA	.	134.0	46.0	91.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
FAM122A	116224	hgsc.bcm.edu	hg19	9	71395705	71395705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	FAM122A	NM_138333	exon1	c.G625A	p.E209K	GAAATGGAAACTG	.	127.0	59.0	85.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
KIF27	55582	hgsc.bcm.edu	hg19	9	86495384	86495384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	KIF27	NM_017576	exon11	c.G2471T	p.S824I	TTCTTACTATCTT	.	26.0	13.0	27.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
LHX6	26468	hgsc.bcm.edu	hg19	9	124979514	124979514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	LHX6	NM_014368	exon5	c.G515T	p.W172L	CGCACCCAGTCGC	.	143.0	91.0	64.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
MAPKAP1	79109	hgsc.bcm.edu	hg19	9	128230280	128230280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	MAPKAP1	NM_001006617	exon10	c.C1316T	p.A439V	TCACAGGCACAGA	.	227.0	66.0	82.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
PITRM1	10531	hgsc.bcm.edu	hg19	10	3208566	3208566	+	Silent	SNP	C	C	T	rs114690446	bycluster	TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	PITRM1,colon,carcinoma,-1,3	PITRM1	NM_014889	exon4	c.G273A	p.Q91Q	ACGGAACTGCACG	.	58.0	6.0	48.0	0.0	.	109	.	.	.	weak	.	.	PASS	Atlas-SNP
PITRM1	10531	hgsc.bcm.edu	hg19	10	3208567	3208567	+	Missense_Mutation	SNP	T	T	G	rs28416720	bycluster	TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	PITRM1,colon,carcinoma,0,3	PITRM1	NM_014889	exon4	c.A272C	p.Q91P	CGGAACTGCACGC	.	57.0	6.0	47.0	0.0	.	109	.	.	.	weak	.	.	PASS	Atlas-SNP
ANK3	288	hgsc.bcm.edu	hg19	10	61868591	61868591	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	ANK3	NM_001204404	exon28	c.T3173A	p.L1058X	TACCCTAAAAATT	.	145.0	66.0	101.0	0.0	.	703	.	.	.	none	.	.	PASS	Atlas-SNP
VCL	7414	hgsc.bcm.edu	hg19	10	75877813	75877813	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	VCL	NM_014000	exon22	c.C3291G	p.N1097K	CCAGAACCTCATG	.	104.0	51.0	68.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
RRP12	23223	hgsc.bcm.edu	hg19	10	99120318	99120318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	RRP12	NM_015179	exon31	c.C3625T	p.P1209S	GAGGGGGTATCTC	.	69.0	37.0	36.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
RRP12	23223	hgsc.bcm.edu	hg19	10	99126540	99126540	+	Silent	SNP	C	C	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	RRP12	NM_015179	exon27	c.G3174A	p.E1058E	CTCCTCCTCTTCT	.	69.0	6.0	32.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
GBF1	8729	hgsc.bcm.edu	hg19	10	104136491	104136491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	GBF1	NM_001199378	exon32	c.A4222G	p.T1408A	CACATCACACCTG	.	48.0	26.0	29.0	0.0	.	142	.	.	.	none	.	.	PASS	Atlas-SNP
SCAF11	9169	hgsc.bcm.edu	hg19	12	46327006	46327006	+	Silent	SNP	A	A	G	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	SCAF11	NM_004719	exon9	c.T642C	p.F214F	TTCTATAAATTCT	.	67.0	23.0	33.0	0.0	.	145	.	.	.	none	.	.	PASS	Atlas-SNP
GRASP	160622	hgsc.bcm.edu	hg19	12	52401044	52401044	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	GRASP	NM_181711	exon1	c.C241T	p.R81X	CCCCGCCGAAAGG	.	71.0	35.0	38.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
ANKS1B	56899	hgsc.bcm.edu	hg19	12	99478796	99478796	+	Silent	SNP	G	G	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	ANKS1B	NM_152788	exon16	c.C2532T	p.S844S	AACATTGCTTCCC	.	131.0	55.0	70.0	0.0	.	180	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC63	160762	hgsc.bcm.edu	hg19	12	111345141	111345141	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	CCDC63	NM_152591	exon12	c.A1553T	p.Q518L	TGGAACAGCCCCT	.	48.0	25.0	40.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
WDR66	144406	hgsc.bcm.edu	hg19	12	122406042	122406042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	WDR66	NM_001178003	exon17	c.A2738G	p.D913G	GGCACGATCGCTC	.	120.0	72.0	69.0	0.0	.	143	.	.	.	none	.	.	PASS	Atlas-SNP
SHISA2	387914	hgsc.bcm.edu	hg19	13	26621071	26621071	+	Silent	SNP	C	C	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	SHISA2	NM_001007538	exon2	c.G468T	p.G156G	GTTACCCCCTGGG	.	110.0	54.0	68.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
TSC22D1	8848	hgsc.bcm.edu	hg19	13	45149121	45149121	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	TSC22D1	NM_183422	exon1	c.T1090G	p.L364V	CACTCAAGATATT	.	77.0	44.0	53.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
EDDM3A	10876	hgsc.bcm.edu	hg19	14	21215972	21215972	+	Missense_Mutation	SNP	G	G	C	rs149270684	bycluster;byfrequency;alternate_allele	TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	EDDM3A	NM_006683	exon2	c.G233C	p.R78P	TTCAGCGTGCATG	.	92.0	35.0	67.0	0.0	.	15	.	.	.	alt	G|0.999;A|0.001	.	PASS	Atlas-SNP
PPP2R5E	5529	hgsc.bcm.edu	hg19	14	63860645	63860645	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	PPP2R5E	NM_006246	exon8	c.A742T	p.I248F	TGATAATACTAGG	.	83.0	40.0	47.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
DDX24	57062	hgsc.bcm.edu	hg19	14	94545834	94545834	+	Silent	SNP	C	C	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	DDX24	NM_020414	exon2	c.G255A	p.E85E	CTCCTCCTCTTCT	.	91.0	4.0	61.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
DICER1	23405	hgsc.bcm.edu	hg19	14	95590600	95590600	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	DICER1	NM_030621	exon9	c.C1309G	p.P437A	TAAAAGGAGAAGG	.	74.0	42.0	47.0	0.0	.	181	.	.	.	none	.	.	PASS	Atlas-SNP
MYO5A	4644	hgsc.bcm.edu	hg19	15	52615613	52615613	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	MYO5A	NM_000259	exon36	c.C4664G	p.S1555C	CAGAAGGAGACGG	.	138.0	59.0	96.0	0.0	.	145	.	.	.	none	.	.	PASS	Atlas-SNP
CGNL1	84952	hgsc.bcm.edu	hg19	15	57730578	57730578	+	Silent	SNP	T	T	C	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	CGNL1	NM_001252335	exon3	c.T381C	p.N127N	CAAGAATGGAGTT	.	146.0	69.0	108.0	0.0	.	125	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC49	54839	hgsc.bcm.edu	hg19	15	71193333	71193333	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	LRRC49	NM_001199017	exon4	c.T281C	p.I94T	AGAAAATTCTTTA	.	297.0	144.0	160.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
ARIH1	25820	hgsc.bcm.edu	hg19	15	72874471	72874471	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	ARIH1,face,carcinoma,0,1	ARIH1	NM_005744	exon13	c.G1532C	p.R511P	TTGAACGAGATAT	.	318.0	149.0	225.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
BLM	641	hgsc.bcm.edu	hg19	15	91298123	91298123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	BLM	NM_000057	exon5	c.A1042G	p.M348V	GAGAAAATGAGTA	.	103.0	49.0	63.0	0.0	.	122	.	.	.	none	.	.	PASS	Atlas-SNP
SNRPA1	6627	hgsc.bcm.edu	hg19	15	101833253	101833253	+	Silent	SNP	C	C	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	SNRPA1	NM_003090	exon2	c.G207A	p.L69L	CACTAACAATGTT	.	387.0	101.0	258.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
AXIN1	8312	hgsc.bcm.edu	hg19	16	343699	343699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	AXIN1	NM_181050	exon8	c.C1975T	p.P659S	GCTGTGGCTTCCT	.	39.0	13.0	29.0	0.0	.	290	.	.	.	none	.	.	PASS	Atlas-SNP
TUSC5	286753	hgsc.bcm.edu	hg19	17	1183315	1183315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	TUSC5	NM_172367	exon1	c.C20A	p.S7Y	TGCAGTCCGAGTT	.	161.0	88.0	88.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
MYH8	4626	hgsc.bcm.edu	hg19	17	10315977	10315977	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	MYH8	NM_002472	exon13	c.A1216T	p.R406W	TGACCCTAGGGTA	.	213.0	104.0	120.0	0.0	.	346	.	.	.	none	.	.	PASS	Atlas-SNP
ERBB2	2064	hgsc.bcm.edu	hg19	17	37880219	37880219	+	Silent	SNP	T	T	C	rs121913469	bycluster;alternate_allele	TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	ERBB2,NS,carcinoma,-1,1	ERBB2	NM_004448	exon19	c.T2263C	p.L755L	AAAGTGTTGAGGG	.	60.0	27.0	57.0	0.0	.	429	.	.	.	alt	.	.	PASS	Atlas-SNP
ERBB2	2064	hgsc.bcm.edu	hg19	17	37880220	37880220	+	Missense_Mutation	SNP	T	T	C	rs121913470		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	ERBB2,NS,carcinoma,0,20	ERBB2	NM_004448	exon19	c.T2264C	p.L755S	AAGTGTTGAGGGA	.	60.0	27.0	56.0	0.0	.	429	.	.	.	weak	.	.	PASS	Atlas-SNP
RHBDF2	79651	hgsc.bcm.edu	hg19	17	74473013	74473013	+	Silent	SNP	C	C	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	RHBDF2	NM_024599	exon9	c.G1101A	p.R367R	GTAGTGCCGCTTC	.	135.0	62.0	81.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF728	388523	hgsc.bcm.edu	hg19	19	23159254	23159254	+	Silent	SNP	C	C	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	.	NM_001267716	exon4	c.G885A	p.K295K	TGAGGCCTTACTA	.	39.0	22.0	21.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	hg19	19	58385790	58385790	+	Missense_Mutation	SNP	G	G	T	rs111727691	bycluster	TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	ZNF814	NM_001144989	exon3	c.C968A	p.P323H	TCATAAGGTCTTT	.	101.0	10.0	48.0	0.0	.	93	.	.	.	weak	G|0.500;T|0.500	0.500	PASS	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	hg19	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532	bycluster	TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	ZNF814	NM_001144989	exon3	c.G965A	p.R322K	TAAGGTCTTTTCC	.	96.0	11.0	45.0	0.0	.	93	.	.	.	weak	C|0.500;T|0.500	0.500	PASS	Atlas-SNP
ZNF512B	57473	hgsc.bcm.edu	hg19	20	62595674	62595674	+	Silent	SNP	T	T	C	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	ZNF512B	NM_020713	exon7	c.A1332G	p.K444K	CTTACCTTTGAGC	.	102.0	45.0	64.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
DYRK1A	1859	hgsc.bcm.edu	hg19	21	38878548	38878548	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	DYRK1A	NM_101395	exon12	c.T1693A	p.L565M	GTTCATTTGCTTG	.	126.0	67.0	91.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
GGT5	2687	hgsc.bcm.edu	hg19	22	24622177	24622177	+	Missense_Mutation	SNP	C	C	T	rs372349468		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	GGT5	NM_001099781	exon8	c.G1096A	p.D366N	GGCCATCGATCTG	.	61.0	32.0	42.0	0.0	.	61	.	.	.	weak	.	.	PASS	Atlas-SNP
INPP5J	27124	hgsc.bcm.edu	hg19	22	31529898	31529898	+	Splice_Site	SNP	G	G	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	INPP5J	NM_001002837	exon13	c.1411-1G>T	.	CCCCCAGATCTCG	.	105.0	59.0	86.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
CDKL5	6792	hgsc.bcm.edu	hg19	X	18598004	18598004	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	CDKL5	NM_003159	exon6	c.G319T	p.V107F	AATGGAGTTCCAC	.	310.0	151.0	222.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
YIPF6	286451	hgsc.bcm.edu	hg19	X	67731818	67731818	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	YIPF6	NM_173834	exon2	c.T185A	p.I62N	ATACCATCGTAAG	.	49.0	29.0	47.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
TEX11	56159	hgsc.bcm.edu	hg19	X	69844743	69844743	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	TEX11	NM_001003811	exon20	c.T1685G	p.L562W	TATTCCAAAGCTT	.	162.0	67.0	92.0	0.0	.	132	.	.	.	none	.	.	PASS	Atlas-SNP
MED12	9968	hgsc.bcm.edu	hg19	X	70350038	70350038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	MED12	NM_005120	exon28	c.C4021T	p.R1341W	CCCCAGCGGCAGC	.	521.0	255.0	317.0	0.0	.	984	.	.	.	none	.	.	PASS	Atlas-SNP
VGLL1	51442	hgsc.bcm.edu	hg19	X	135630875	135630875	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	VGLL1	NM_016267	exon3	c.G342C	p.Q114H	GAATCAGTTCTCA	.	112.0	53.0	78.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
BCAP31	10134	hgsc.bcm.edu	hg19	X	152988658	152988658	+	Silent	SNP	C	C	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	BCAP31	NM_001139457	exon2	c.G243A	p.A81A	GACCTCCGCATAG	.	473.0	206.0	314.0	1.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
HCFC1	3054	hgsc.bcm.edu	hg19	X	153216353	153216353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	HCFC1	NM_005334	exon23	c.T5614C	p.C1872R	GGCCACAGGCATT	.	360.0	177.0	275.0	0.0	.	284	.	.	.	none	.	.	PASS	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	14760	14760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	.	ENST00000361789	exon1	c.G14A	p.R5H	CAATACGCAAAAC	.	99.0	7.0	129.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC58	116064	hgsc.bcm.edu	hg19	3	120054774	120054774	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	LRRC58	NM_001099678	exon2	c.528delT	p.N176fs	.	.	58.0	20.0	55.0	0.0	.	18	.	0.344828	0	none	.	.	PASS	Atlas-Indel,Pindel
CAMK2N1	55450	hgsc.bcm.edu	hg19	1	20811794	20811796	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	CAMK2N1	NM_018584	exon1	c.78_80del	p.26_27del	.	.	78.0	48.0	59.0	0.0	.	7	.	0.615385	0	none	.	.	PASS	Atlas-Indel,Pindel
HSPA14	51182	hgsc.bcm.edu	hg19	10	14909284	14909284	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	HSPA14	NM_016299	exon11	c.1195delA	p.I399fs	.	.	127.0	66.0	74.0	0.0	.	42	.	0.519685	0	none	.	.	PASS	Atlas-Indel,Pindel
RSG1	79363	hgsc.bcm.edu	hg19	1	16563166	16563167	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	RSG1	NM_030907	exon1	c.72_73insA	p.Y24_L25delinsX	.	.	205.0	85.0	133.0	0.0	.	18	.	0.414634	0	none	.	.	PASS	Atlas-Indel,Pindel
URM1	81605	hgsc.bcm.edu	hg19	9	131151666	131151667	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	URM1	NM_001135947	exon4	c.314_315del	p.105_105del	.	.	169.0	41.0	62.0	0.0	.	19	.	0.242604	0	none	.	.	PASS	Atlas-Indel,Pindel
PRAMEF1	65121	hgsc.bcm.edu	hg19	1	12855755	12855756	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	PRAMEF1	NM_023013	exon4	c.1035_1036insAA	p.E345fs	.	.	261.0	99.0	179.0	0.0	.	78	.	0.37931	0	none	.	.	PASS	Atlas-Indel,Pindel
PPM1M	132160	hgsc.bcm.edu	hg19	3	52282984	52282984	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	PPM1M	NM_144641	exon8	c.990delA	p.L330fs	.	.	94.0	53.0	58.0	0.0	.	9	.	0.56383	0	none	.	.	PASS	Atlas-Indel,Pindel
PIGM	93183	hgsc.bcm.edu	hg19	1	160001302	160001303	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	PIGM	NM_145167	exon1	c.228_229insA	p.Y76_T77delinsX	.	.	380.0	171.0	233.0	0.0	.	27	.	0.45	0	none	.	.	PASS	Atlas-Indel,Pindel
EDDM3A	10876	hgsc.bcm.edu	hg19	14	21215972	21215973	+	Frame_Shift_Ins	INS	-	-	CA	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	EDDM3A	NM_006683	exon2	c.233_234insCA	p.R78fs	.	.	92.0	29.0	67.0	0.0	.	15	.	0.315217	0	none	.	.	PASS	Atlas-Indel,Pindel
LRRK1	79705	hgsc.bcm.edu	hg19	15	101589985	101589985	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	LRRK1	NM_024652	exon23	c.3435delT	p.F1145fs	.	.	62.0	28.0	41.0	0.0	.	310	.	0.451613	0	none	.	.	PASS	Atlas-Indel,Pindel
EDDM3A	10876	hgsc.bcm.edu	hg19	14	21215971	21215972	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	EDDM3A	NM_006683	exon2	c.232_233insCT	p.R78fs	.	.	93.0	29.0	68.0	0.0	.	15	.	0.311828	0	none	.	.	PASS	Atlas-INDEL
CLUH	23277	hgsc.bcm.edu	hg19	17	2599551	2599552	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	.	NM_015229	exon13	c.2176_2177del	p.726_726del	.	.	169.0	91.0	122.0	0.0	.	.	.	0.538462	0	none	.	.	PASS	Atlas-Indel,Pindel
MUC5B	727897	hgsc.bcm.edu	hg19	11	1256589	1256589	+	Frame_Shift_Del	DEL	C	C	-	rs35904319		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	MUC5B	NM_002458	exon23	c.2825delT	p.I942fs	.	.	124.0	57.0	105.0	0.0	.	473	.	0.459677	0	weak	.	.	PASS	Atlas-Indel,Pindel
ANGPTL3	27329	hgsc.bcm.edu	hg19	1	63070461	63070462	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-Y8-A894-01A-11D-A35Z-10	TCGA-Y8-A894-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5b9ebe3e-3992-4806-934e-c135aa155ff9	a1ac890b-98dd-4011-aee1-b4409f2a659a	.	ANGPTL3	NM_014495	exon7	c.1356_1357insC	p.N452fs	.	.	363.0	90.0	234.0	0.0	.	42	.	0.248	.	none	.	.	PASS	Pindel
