Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
AKR1A1	10327	hgsc.bcm.edu	hg19	1	46034873	46034873	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	AKR1A1	NM_001202413	exon9	c.A884G	p.N295S	ACAAAAATTGGAG	.	112.0	37.0	113.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
PEAR1	375033	hgsc.bcm.edu	hg19	1	156878561	156878561	+	Silent	SNP	C	C	T	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	PEAR1	NM_001080471	exon10	c.C1230T	p.C410C	TCTCTGCCTGCAC	.	51.0	12.0	94.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
SUCO	51430	hgsc.bcm.edu	hg19	1	172543034	172543034	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	.	NM_014283	exon10	c.T1053A	p.F351L	AAGGTTTGTTATT	.	61.0	15.0	25.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	216495239	216495239	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	USH2A	NM_007123	exon9	c.A1630T	p.T544S	CTTCAGTGAAGCT	.	113.0	42.0	72.0	0.0	.	1168	.	.	.	none	.	.	PASS	Atlas-SNP
NUP133	55746	hgsc.bcm.edu	hg19	1	229631660	229631660	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	NUP133	NM_018230	exon7	c.A954T	p.E318D	AATGTTTTCCTTC	.	33.0	13.0	21.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
PREPL	9581	hgsc.bcm.edu	hg19	2	44549877	44549877	+	Silent	SNP	T	T	C	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	PREPL	NM_001171603	exon13	c.A2013G	p.T671T	TTCACCTGTGTCC	.	95.0	35.0	54.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
GPD2	2820	hgsc.bcm.edu	hg19	2	157407170	157407170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	GPD2	NM_001083112	exon8	c.G883A	p.D295N	TTCACGGACTCTG	.	65.0	20.0	54.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
ABCB6	10058	hgsc.bcm.edu	hg19	2	220081117	220081117	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	ABCB6	NM_005689	exon4	c.G939C	p.K313N	GAGGAACTTGAGG	.	151.0	46.0	144.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	hg19	2	241689964	241689964	+	Silent	SNP	C	C	T	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	KIF1A	NM_001244008	exon28	c.G2859A	p.R953R	GAAGGCCCTGGGG	.	88.0	29.0	135.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
RBM6	10180	hgsc.bcm.edu	hg19	3	50103677	50103677	+	Silent	SNP	T	T	G	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	RBM6	NM_005777	exon17	c.T2685G	p.P895P	CCAGCCTAAAGTG	.	72.0	25.0	77.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
HERC6	55008	hgsc.bcm.edu	hg19	4	89361324	89361324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	HERC6	NM_017912	exon22	c.C2764A	p.Q922K	GGATACCAAAAAT	.	152.0	52.0	109.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
CMYA5	202333	hgsc.bcm.edu	hg19	5	79025276	79025276	+	Missense_Mutation	SNP	A	A	C	rs114327893	bycluster;by1000genomes;alternate_allele	TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	CMYA5	NM_153610	exon2	c.A688C	p.K230Q	AAAATTAAGATGT	.	264.0	85.0	134.0	0.0	.	643	.	.	.	alt	A|0.999;G|0.001	.	PASS	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	90073763	90073763	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	GPR98	NM_032119	exon62	c.T12569G	p.F4190C	CAGTGTTCTGGAG	.	127.0	57.0	96.0	0.0	.	605	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF318	24149	hgsc.bcm.edu	hg19	6	43305308	43305308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	ZNF318	NM_014345	exon10	c.C6428T	p.S2143F	AATTGGGAAGATT	.	89.0	32.0	77.0	0.0	.	175	.	.	.	none	.	.	PASS	Atlas-SNP
CDC5L	988	hgsc.bcm.edu	hg19	6	44392211	44392211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	CDC5L	NM_001253	exon11	c.A1460G	p.K487R	CCCCTAAGAATGA	.	117.0	39.0	78.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
SYNJ2	8871	hgsc.bcm.edu	hg19	6	158504535	158504535	+	Silent	SNP	G	G	A	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	SYNJ2	NM_003898	exon21	c.G2940A	p.R980R	CATTCGGAAACGA	.	76.0	26.0	99.0	0.0	.	111	.	.	.	none	.	.	PASS	Atlas-SNP
FAM20C	56975	hgsc.bcm.edu	hg19	7	208977	208977	+	Splice_Site	SNP	G	G	A	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	FAM20C	NM_020223	exon3	c.863+1G>A	.	CATGAAGTAAGTG	.	49.0	12.0	95.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
SLC4A2	6522	hgsc.bcm.edu	hg19	7	150771852	150771852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	SLC4A2	NM_003040	exon19	c.G2971A	p.V991M	TTCCCTGTGTGGA	.	73.0	24.0	92.0	0.0	.	98	.	.	.	none	.	.	PASS	Atlas-SNP
PTK2	5747	hgsc.bcm.edu	hg19	8	141669756	141669756	+	Silent	SNP	A	A	G	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	PTK2	NM_005607	exon32	c.T3034C	p.L1012L	AGTTCAATAGCTT	.	121.0	42.0	90.0	0.0	.	311	.	.	.	none	.	.	PASS	Atlas-SNP
GAPVD1	26130	hgsc.bcm.edu	hg19	9	128116940	128116940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	GAPVD1	NM_015635	exon23	c.G3658A	p.A1220T	AAAAGAGCCCCAT	.	82.0	25.0	61.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
LAMC3	10319	hgsc.bcm.edu	hg19	9	133884789	133884789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	LAMC3	NM_006059	exon1	c.C188A	p.P63H	TCTGTCCCCACGT	.	46.0	21.0	76.0	0.0	.	167	.	.	.	none	.	.	PASS	Atlas-SNP
OR51D1	390038	hgsc.bcm.edu	hg19	11	4661150	4661150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	OR51D1	NM_001004751	exon1	c.C130A	p.L44M	TTCCCACTGTGTT	.	72.0	21.0	82.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
OR52E2	119678	hgsc.bcm.edu	hg19	11	5080608	5080608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	OR52E2	NM_001005164	exon1	c.C250T	p.L84F	TTCCAAGCATCTT	.	126.0	40.0	91.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
OR52E2	119678	hgsc.bcm.edu	hg19	11	5080609	5080609	+	Missense_Mutation	SNP	C	C	T	rs369925067	alternate_allele	TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	OR52E2	NM_001005164	exon1	c.G249A	p.M83I	TCCAAGCATCTTA	.	126.0	40.0	93.0	0.0	.	63	.	.	.	alt	.	.	PASS	Atlas-SNP
MYBPC3	4607	hgsc.bcm.edu	hg19	11	47373013	47373013	+	Silent	SNP	T	T	C	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	MYBPC3	NM_000256	exon2	c.A69G	p.A23A	GCTGCCTGCGGCC	.	22.0	4.0	49.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
GRM5	2915	hgsc.bcm.edu	hg19	11	88300498	88300498	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	GRM5	NM_000842	exon8	c.T2353A	p.W785R	CTAGCCATATAAT	.	56.0	18.0	59.0	0.0	.	414	.	.	.	none	.	.	PASS	Atlas-SNP
MAML2	84441	hgsc.bcm.edu	hg19	11	95826314	95826314	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	MAML2	NM_032427	exon2	c.G881C	p.G294A	TCGTCTCCGTACC	.	82.0	31.0	55.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
MAML2	84441	hgsc.bcm.edu	hg19	11	95826315	95826315	+	Nonsense_Mutation	SNP	C	C	A	rs369905258	alternate_allele	TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	MAML2	NM_032427	exon2	c.G880T	p.G294X	CGTCTCCGTACCT	.	80.0	28.0	55.0	0.0	.	94	.	.	.	alt	.	.	PASS	Atlas-SNP
ITGA5	3678	hgsc.bcm.edu	hg19	12	54801981	54801981	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	ITGA5	NM_002205	exon7	c.T730A	p.S244T	AATAAGATTCTGC	.	53.0	24.0	69.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
BAZ2A	11176	hgsc.bcm.edu	hg19	12	56992544	56992544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	BAZ2A	NM_013449	exon29	c.C5576T	p.A1859V	TCAGCCGCAAACT	.	50.0	15.0	60.0	0.0	.	263	.	.	.	none	.	.	PASS	Atlas-SNP
ATP6V0A2	23545	hgsc.bcm.edu	hg19	12	124236887	124236887	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	ATP6V0A2	NM_012463	exon17	c.C2113T	p.Q705X	GGAAGCCAAGATA	.	116.0	38.0	83.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
HECTD1	25831	hgsc.bcm.edu	hg19	14	31637663	31637663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	HECTD1	NM_015382	exon10	c.C1463T	p.P488L	TTAACTGGACACA	.	65.0	25.0	50.0	0.0	.	159	.	.	.	none	.	.	PASS	Atlas-SNP
NAA30	122830	hgsc.bcm.edu	hg19	14	57857993	57857993	+	Silent	SNP	G	G	C	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	NAA30	NM_001011713	exon2	c.G318C	p.L106L	GGTCCTGAGCGTA	.	107.0	33.0	146.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
ZFYVE1	53349	hgsc.bcm.edu	hg19	14	73442299	73442299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	ZFYVE1	NM_021260	exon9	c.A1766G	p.Q589R	GCGATCTGGTCTG	.	78.0	26.0	90.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
C15orf62	643338	hgsc.bcm.edu	hg19	15	41063134	41063134	+	Silent	SNP	C	C	T	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	C15orf62	NM_001130448	exon1	c.C441T	p.L147L	CTTCCTCTCCTTC	.	71.0	22.0	101.0	0.0	.	3	.	.	.	none	.	.	PASS	Atlas-SNP
SSTR5	6755	hgsc.bcm.edu	hg19	16	1129708	1129708	+	Silent	SNP	C	C	T	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	SSTR5	NM_001172560	exon2	c.C840T	p.P280P	GGAGCCCGCCTCC	.	98.0	46.0	64.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
GRIN2A	2903	hgsc.bcm.edu	hg19	16	10031887	10031887	+	Silent	SNP	G	G	A	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	GRIN2A	NM_000833	exon4	c.C936T	p.Y312Y	GGGGATGTAGGAG	.	143.0	78.0	94.0	0.0	.	366	.	.	.	none	.	.	PASS	Atlas-SNP
KARS	3735	hgsc.bcm.edu	hg19	16	75662551	75662551	+	Silent	SNP	C	C	T	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	KARS	NM_001130089	exon14	c.G1695A	p.L565L	ATATTCCAGGGCA	.	129.0	72.0	89.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
RAP1GAP2	23108	hgsc.bcm.edu	hg19	17	2888281	2888281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	RAP1GAP2	NM_015085	exon11	c.C734A	p.S245Y	AGGCCTCCCAAAT	.	62.0	20.0	49.0	0.0	.	90	.	.	.	none	.	.	PASS	Atlas-SNP
FBF1	85302	hgsc.bcm.edu	hg19	17	73916469	73916469	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	FBF1	NM_001080542	exon17	c.C1671G	p.S557R	TTCTGTGCTCGGC	.	107.0	32.0	170.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
TNRC6C	57690	hgsc.bcm.edu	hg19	17	76087521	76087521	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	TNRC6C	NM_018996	exon15	c.C3803G	p.A1268G	CTTTAGCTGGACT	.	91.0	35.0	83.0	0.0	.	173	.	.	.	none	.	.	PASS	Atlas-SNP
USP36	57602	hgsc.bcm.edu	hg19	17	76802272	76802272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	USP36	NM_025090	exon15	c.G2182A	p.V728I	CAACGACGGGGTG	.	68.0	17.0	98.0	0.0	.	243	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRM	5797	hgsc.bcm.edu	hg19	18	7774145	7774145	+	Splice_Site	SNP	A	A	C	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	PTPRM	NM_002845	exon2	c.74-2A>C	.	CATTTTAGGTGGC	.	82.0	26.0	64.0	0.0	.	185	.	.	.	none	.	.	PASS	Atlas-SNP
EPG5	57724	hgsc.bcm.edu	hg19	18	43503240	43503240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	EPG5	NM_020964	exon15	c.G2832A	p.M944I	CTGCTTCATACTT	.	34.0	11.0	32.0	0.0	.	199	.	.	.	none	.	.	PASS	Atlas-SNP
DSEL	92126	hgsc.bcm.edu	hg19	18	65179563	65179563	+	Silent	SNP	A	A	G	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	DSEL	NM_032160	exon2	c.T2313C	p.H771H	CCTATCATGTCTT	.	87.0	33.0	70.0	0.0	.	196	.	.	.	none	.	.	PASS	Atlas-SNP
CNDP2	55748	hgsc.bcm.edu	hg19	18	72186228	72186228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	CNDP2	NM_018235	exon11	c.C1255T	p.P419S	AGTATTCCCGTGA	.	108.0	31.0	131.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
OXT	5020	hgsc.bcm.edu	hg19	20	3052889	3052889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	OXT,NS,carcinoma,0,1	OXT	NM_000915	exon2	c.G287A	p.G96D	GCGGGGGCCGCTG	.	235.0	75.0	434.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
HELZ2	85441	hgsc.bcm.edu	hg19	20	62199985	62199985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	.	NM_001037335	exon6	c.G1456A	p.D486N	GTGTGTCCACTGC	.	51.0	16.0	47.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
PNPLA5	150379	hgsc.bcm.edu	hg19	22	44287719	44287719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	PNPLA5	NM_138814	exon1	c.C42A	p.F14L	GCCGGAGAAGGAC	.	206.0	11.0	347.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
SLC9A7	84679	hgsc.bcm.edu	hg19	X	46541773	46541773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	SLC9A7	NM_001257291	exon2	c.A523G	p.K175E	TCACCTTCCGTAG	.	60.0	30.0	51.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
IQSEC2	23096	hgsc.bcm.edu	hg19	X	53350189	53350189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	IQSEC2	NM_001111125	exon1	c.G133A	p.E45K	GCTCCTCGATGCG	.	46.0	19.0	97.0	0.0	.	195	.	.	.	none	.	.	PASS	Atlas-SNP
ND4L	0	hgsc.bcm.edu	hg19	MT	10535	10535	+	Silent	SNP	T	T	C	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	.	ENST00000361335	exon1	c.T66C	p.Y22Y	AGTATATCGCTCA	.	8.0	6.0	27.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
PTEN	5728	hgsc.bcm.edu	hg19	10	89624274	89624274	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	PTEN,NS,adenocarcinoma,-1,1	PTEN	NM_000314	exon1	c.47delA	p.Y16fs	.	.	64.0	39.0	58.0	0.0	.	3652	.	0.609375	0	none	.	.	PASS	Atlas-Indel,Pindel
GAPVD1	26130	hgsc.bcm.edu	hg19	9	128116938	128116939	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	GAPVD1	NM_015635	exon23	c.3656_3657insA	p.R1219fs	.	.	79.0	23.0	60.0	0.0	.	124	.	0.291139	0	none	.	.	PASS	Atlas-INDEL
NUP133	55746	hgsc.bcm.edu	hg19	1	229631662	229631662	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	NUP133	NM_018230	exon7	c.953delA	p.E318fs	.	.	34.0	14.0	20.0	0.0	.	111	.	0.411765	0	none	.	.	PASS	Atlas-INDEL
KIF26A	26153	hgsc.bcm.edu	hg19	14	104641420	104641420	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	KIF26A	NM_015656	exon12	c.2294delA	p.D765fs	.	.	66.0	22.0	113.0	0.0	.	84	.	0.333333	0	none	.	.	PASS	Atlas-Indel,Pindel
EXTL1	2134	hgsc.bcm.edu	hg19	1	26358007	26358007	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	EXTL1	NM_004455	exon6	c.1290delG	p.Q430fs	.	.	118.0	43.0	168.0	0.0	.	61	.	0.364407	0	none	.	.	PASS	Atlas-Indel,Pindel
GDAP2	54834	hgsc.bcm.edu	hg19	1	118420604	118420614	+	Frame_Shift_Del	DEL	TGAGGGAGAAC	TGAGGGAGAAC	-	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	TGAGGGAGAAC	TGAGGGAGAAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	GDAP2	NM_001135589	exon13	c.1464_1474del	p.488_492del	.	.	92.0	31.0	63.0	0.0	.	37	.	0.336957	0	none	.	.	PASS	Atlas-Indel,Pindel
ZNF285	26974	hgsc.bcm.edu	hg19	19	44892064	44892064	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	ZNF285	NM_152354	exon4	c.344delC	p.S115fs	.	.	127.0	48.0	79.0	0.0	.	86	.	0.377953	0	none	.	.	PASS	Atlas-Indel,Pindel
MYNN	55892	hgsc.bcm.edu	hg19	3	169496760	169496761	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	MYNN	NM_018657	exon3	c.471_472insG	p.E157fs	.	.	71.0	23.0	57.0	0.0	.	36	.	0.323944	0	none	.	.	PASS	Atlas-Indel,Pindel
SETDB1	9869	hgsc.bcm.edu	hg19	1	150915165	150915168	+	Frame_Shift_Del	DEL	GTAT	GTAT	-	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	GTAT	GTAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	SETDB1	NM_012432	exon6	c.673_673del	p.225_225del	.	.	110.0	34.0	78.0	0.0	.	204	.	0.309091	0	none	.	.	PASS	Atlas-INDEL
GAPVD1	26130	hgsc.bcm.edu	hg19	9	128116940	128116941	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	GAPVD1	NM_015635	exon23	c.3658_3659insC	p.A1220fs	.	.	82.0	15.0	61.0	0.0	.	124	.	0.183	.	none	.	.	PASS	Pindel
SETDB1	9869	hgsc.bcm.edu	hg19	1	150915166	150915170	+	Splice_Site	DEL	TATGT	TATGT	-	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	TATGT	TATGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	SETDB1	.	.	.	.	.	.	109.0	27.0	79.0	0.0	.	204	.	0.248	.	none	.	.	PASS	Pindel
NUP133	55746	hgsc.bcm.edu	hg19	1	229631660	229631662	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	NUP133	NM_018230	exon7	c.953_955del	p.318_319del	.	.	34.0	11.0	20.0	0.0	.	111	.	0.324	.	none	.	.	PASS	Pindel
PCNT	5116	hgsc.bcm.edu	hg19	21	47831328	47831328	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-Y8-A897-01A-11D-A35Z-10	TCGA-Y8-A897-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a18fd0a9-7914-410c-8f2f-0b8c86803b88	56e7a4a9-632d-45d1-a1b1-f3ed4e689c9e	.	PCNT	NM_006031	exon28	c.5340delC	p.A1780fs	.	.	90.0	24.0	145.0	0.0	.	283	.	0.267	.	none	.	.	PASS	Pindel
