Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
CAMTA1	23261	hgsc.bcm.edu	hg19	1	7724719	7724719	+	Silent	SNP	G	G	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	CAMTA1	NM_015215	exon9	c.G2112T	p.L704L	GGTCCTGCTCAAG	.	48.0	13.0	32.0	0.0	.	226	.	.	.	none	.	.	PASS	Atlas-SNP
PDPN	10630	hgsc.bcm.edu	hg19	1	13910573	13910573	+	Silent	SNP	G	G	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	PDPN,colon,carcinoma,0,1	PDPN	NM_006474	exon1	c.G273T	p.S91S	CGCGTCGCTCTGG	.	58.0	3.0	35.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
XKR8	55113	hgsc.bcm.edu	hg19	1	28290159	28290159	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	XKR8	NM_018053	exon2	c.G445C	p.V149L	ACGCTGGTGCTGG	.	128.0	32.0	97.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
EBNA1BP2	10969	hgsc.bcm.edu	hg19	1	43632514	43632514	+	Silent	SNP	G	G	A	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	EBNA1BP2	NM_001159936	exon8	c.C855T	p.G285G	CTGCTGGCCTTTG	.	84.0	26.0	70.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
MPL	4352	hgsc.bcm.edu	hg19	1	43814558	43814558	+	Silent	SNP	G	G	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	MPL	NM_005373	exon9	c.G1353T	p.L451L	GGAGCTGCGCCCG	.	64.0	20.0	55.0	0.0	.	651	.	.	.	none	.	.	PASS	Atlas-SNP
CCBL2	56267	hgsc.bcm.edu	hg19	1	89418774	89418774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	CCBL2	NM_001008661	exon10	c.C926A	p.T309K	TAAATCGTGTTTT	.	154.0	36.0	108.0	0.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
CNST	163882	hgsc.bcm.edu	hg19	1	246811232	246811232	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	CNST	NM_152609	exon9	c.C1729G	p.Q577E	CTCCTTCAAGATC	.	239.0	69.0	161.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
ADAM17	6868	hgsc.bcm.edu	hg19	2	9668056	9668056	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	ADAM17	NM_003183	exon5	c.A478T	p.K160X	TGTCTTTGGTATC	.	132.0	37.0	95.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
SLC35F5	80255	hgsc.bcm.edu	hg19	2	114513109	114513109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	SLC35F5	NM_025181	exon2	c.C53A	p.S18Y	GGTGAAGAACTCA	.	144.0	48.0	105.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
ITGA6	3655	hgsc.bcm.edu	hg19	2	173335733	173335733	+	Silent	SNP	T	T	C	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.,2	ITGA6	NM_000210	exon5	c.T675C	p.T225T	TAACACTTTTTTT	.	95.0	26.0	81.0	0.0	.	171	.	.	.	none	.	.	PASS	Atlas-SNP
FARP2	9855	hgsc.bcm.edu	hg19	2	242312532	242312532	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	FARP2	NM_014808	exon2	c.A10G	p.I4V	GGGGAGATAGAAG	.	139.0	35.0	101.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
PLXNB1	5364	hgsc.bcm.edu	hg19	3	48461649	48461649	+	Silent	SNP	T	T	A	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	PLXNB1	NM_001130082	exon11	c.A2046T	p.P682P	AGGGTCTGGGGAG	.	28.0	11.0	23.0	0.0	.	150	.	.	.	none	.	.	PASS	Atlas-SNP
SMIM4	440957	hgsc.bcm.edu	hg19	3	52570837	52570837	+	Silent	SNP	C	C	A	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	.	NM_001124767	exon1	c.C66A	p.I22I	TGGCATCTACCGG	.	123.0	34.0	95.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
BBX	56987	hgsc.bcm.edu	hg19	3	107508715	107508715	+	Missense_Mutation	SNP	C	C	T	rs374184448		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	BBX	NM_001142568	exon14	c.C2285T	p.P762L	ATGTTCCGGAAAA	.	401.0	90.0	297.0	0.0	.	156	.	.	.	weak	.	.	PASS	Atlas-SNP
COL6A5	256076	hgsc.bcm.edu	hg19	3	130159453	130159453	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	COL6A5	NM_153264	exon35	c.T6271C	p.Y2091H	GAAAATTATGAGA	.	93.0	23.0	96.0	0.0	.	205	.	.	.	none	.	.	PASS	Atlas-SNP
VPS8	23355	hgsc.bcm.edu	hg19	3	184714225	184714225	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	VPS8	NM_001009921	exon43	c.T3772A	p.C1258S	GATTACTGCTCTA	.	89.0	36.0	41.0	0.0	.	109	.	.	.	none	.	.	PASS	Atlas-SNP
WDR19	57728	hgsc.bcm.edu	hg19	4	39218827	39218827	+	Silent	SNP	T	T	C	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	WDR19	NM_025132	exon13	c.T1323C	p.A441A	TGCTGCTGCACTT	.	95.0	28.0	82.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
WDFY3	23001	hgsc.bcm.edu	hg19	4	85636511	85636511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	WDFY3,colon,carcinoma,+1,1	WDFY3	NM_014991	exon50	c.G7901A	p.G2634E	CCATCTCCAGAGA	.	75.0	21.0	50.0	0.0	.	314	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0922	23240	hgsc.bcm.edu	hg19	4	154478175	154478175	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	KIAA0922	NM_001131007	exon6	c.G490T	p.G164X	GAAGAAGGAAGCA	.	223.0	87.0	172.0	0.0	.	214	.	.	.	none	.	.	PASS	Atlas-SNP
PALLD	23022	hgsc.bcm.edu	hg19	4	169842683	169842683	+	Splice_Site	SNP	A	A	G	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	PALLD	NM_016081	exon17	c.2800-2A>G	.	TGATTTAGGTCAG	.	60.0	19.0	48.0	0.0	.	179	.	.	.	none	.	.	PASS	Atlas-SNP
DMXL1	1657	hgsc.bcm.edu	hg19	5	118484771	118484771	+	Silent	SNP	T	T	C	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	DMXL1	NM_005509	exon18	c.T3249C	p.C1083C	TGAATGTGAGTCA	.	185.0	57.0	97.0	0.0	.	268	.	.	.	none	.	.	PASS	Atlas-SNP
CTNNA1	1495	hgsc.bcm.edu	hg19	5	138145868	138145868	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	CTNNA1	NM_001903	exon4	c.A443C	p.Y148S	ATGTCTACAAATT	.	133.0	35.0	82.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
CTNNA1	1495	hgsc.bcm.edu	hg19	5	138145869	138145869	+	Silent	SNP	C	C	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	CTNNA1	NM_001903	exon4	c.C444T	p.Y148Y	TGTCTACAAATTA	.	131.0	36.0	82.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
SKIV2L	6499	hgsc.bcm.edu	hg19	6	31930543	31930543	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	SKIV2L	NM_006929	exon12	c.T1264G	p.F422V	GTCATCTTTGATG	.	67.0	15.0	69.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1244	57221	hgsc.bcm.edu	hg19	6	138615186	138615186	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	KIAA1244	NM_020340	exon20	c.A3425C	p.Y1142S	TTCTTTACCAGCT	.	115.0	25.0	88.0	0.0	.	236	.	.	.	none	.	.	PASS	Atlas-SNP
FNDC1	84624	hgsc.bcm.edu	hg19	6	159653341	159653341	+	Silent	SNP	G	G	A	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	FNDC1	NM_032532	exon11	c.G1797A	p.K599K	AGATAAGCCTGGC	.	46.0	22.0	42.0	0.0	.	250	.	.	.	none	.	.	PASS	Atlas-SNP
POLM	27434	hgsc.bcm.edu	hg19	7	44116188	44116188	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	POLM	NM_013284	exon6	c.A755T	p.D252V	CACCGGTCAGCAG	.	99.0	43.0	72.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
MAGI2	9863	hgsc.bcm.edu	hg19	7	77764393	77764393	+	Silent	SNP	C	C	A	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	MAGI2	NM_012301	exon17	c.G2976T	p.V992V	GAGCTTCACGATG	.	209.0	42.0	110.0	0.0	.	246	.	.	.	none	.	.	PASS	Atlas-SNP
SLC35G5	83650	hgsc.bcm.edu	hg19	8	11189416	11189416	+	Silent	SNP	C	C	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	.	NM_054028	exon1	c.C801T	p.F267F	CTCCTTCACATGT	.	113.0	6.0	90.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
NRG1	3084	hgsc.bcm.edu	hg19	8	31497511	31497511	+	Missense_Mutation	SNP	G	G	C	rs367543150	bycluster	TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	NRG1	NM_013962	exon1	c.G11C	p.R4P	GATGGCGACGCGC	.	5.0	4.0	1.0	0.0	.	260	.	.	.	weak	.	.	PASS	Atlas-SNP
ADAM32	203102	hgsc.bcm.edu	hg19	8	39044451	39044451	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	ADAM32	NM_145004	exon11	c.G939C	p.E313D	TCTGGAGGCATTT	.	86.0	19.0	72.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
NKAIN3	286183	hgsc.bcm.edu	hg19	8	63659504	63659504	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	NKAIN3	NM_173688	exon4	c.T287A	p.M96K	ATCTAATGACATT	.	68.0	21.0	56.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
COPS5	10987	hgsc.bcm.edu	hg19	8	67955532	67955532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	COPS5	NM_006837	exon8	c.C941A	p.A314D	TGGATAGCTTCTA	.	103.0	22.0	98.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
POLR2K	5440	hgsc.bcm.edu	hg19	8	101163593	101163593	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	POLR2K	NM_005034	exon2	c.C10G	p.Q4E	GACACCCAGAAGG	.	88.0	24.0	73.0	0.0	.	6	.	.	.	none	.	.	PASS	Atlas-SNP
TRMT12	55039	hgsc.bcm.edu	hg19	8	125463695	125463695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	TRMT12	NM_017956	exon1	c.G527T	p.R176L	CAAAACGAGGGCG	.	93.0	37.0	60.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC19	64922	hgsc.bcm.edu	hg19	9	26999703	26999703	+	Splice_Site	SNP	T	T	C	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	LRRC19	.	.	.	.	CAGACCTGATAGA	.	53.0	16.0	35.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
QSOX2	169714	hgsc.bcm.edu	hg19	9	139100813	139100813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	QSOX2	NM_181701	exon12	c.G1858T	p.A620S	GAAGGGCAGGCCT	.	75.0	25.0	51.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
MYO3A	53904	hgsc.bcm.edu	hg19	10	26385347	26385347	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	MYO3A	NM_017433	exon16	c.G1600C	p.A534P	ATTTATGCTGGTT	.	246.0	65.0	193.0	0.0	.	371	.	.	.	none	.	.	PASS	Atlas-SNP
MUC15	143662	hgsc.bcm.edu	hg19	11	26582626	26582626	+	Missense_Mutation	SNP	G	G	T	rs375176901	alternate_allele	TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	MUC15	NM_001135091	exon5	c.C1072A	p.R358S	AAGTACGAAGTGG	.	165.0	51.0	114.0	0.0	.	88	.	.	.	alt	.	.	PASS	Atlas-SNP
ATG13	9776	hgsc.bcm.edu	hg19	11	46671731	46671731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	ATG13_ENST00000528494,NS,carcinoma,0,2	ATG13	NM_001142673	exon7	c.G322A	p.D108N	AGGTGTGATAAAG	.	31.0	9.0	28.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
MADD	8567	hgsc.bcm.edu	hg19	11	47298344	47298344	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	MADD	NM_130474	exon5	c.T1025A	p.M342K	TGGCAATGATCTA	.	97.0	21.0	70.0	0.0	.	172	.	.	.	none	.	.	PASS	Atlas-SNP
DDB1	1642	hgsc.bcm.edu	hg19	11	61079364	61079364	+	Silent	SNP	C	C	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	DDB1	NM_001923	exon18	c.G2169A	p.K723K	GCAGATCTTCCTG	.	51.0	10.0	55.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
MAP4K2	5871	hgsc.bcm.edu	hg19	11	64557689	64557689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	MAP4K2	NM_004579	exon29	c.T2219C	p.L740P	AAGGTCAGCTCAG	.	27.0	9.0	34.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
MAML2	84441	hgsc.bcm.edu	hg19	11	95825254	95825254	+	Silent	SNP	C	C	T	rs61749250	bycluster	TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	MAML2,caecum,carcinoma,0,2	MAML2	NM_032427	exon2	c.G1941A	p.Q647Q	CTGCTGCTGTTGT	.	143.0	6.0	122.0	1.0	.	94	.	.	.	weak	.	.	PASS	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103128412	103128412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	DYNC2H1	NM_001080463	exon70	c.A10558G	p.N3520D	AAAATTAATAACA	.	93.0	20.0	73.0	0.0	.	246	.	.	.	none	.	.	PASS	Atlas-SNP
SIK3	23387	hgsc.bcm.edu	hg19	11	116717228	116717228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	SIK3	NM_025164	exon23	c.A3676G	p.S1226G	CATCACTCAGGTC	.	93.0	21.0	63.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
ATN1	1822	hgsc.bcm.edu	hg19	12	7045900	7045900	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	ATN1	NM_001007026	exon5	c.G1470C	p.Q490H	GCAGCAGCAGCAG	.	43.0	7.0	18.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
PLBD2	196463	hgsc.bcm.edu	hg19	12	113825565	113825565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	PLBD2	NM_173542	exon11	c.C1456T	p.H486Y	TTCCTCCATGACC	.	62.0	15.0	54.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
SLC7A8	23428	hgsc.bcm.edu	hg19	14	23634614	23634614	+	Missense_Mutation	SNP	T	T	A	rs371235147	alternate_allele	TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	SLC7A8	NM_012244	exon3	c.A388T	p.I130F	GGTAGATCACCAG	.	41.0	14.0	31.0	0.0	.	54	.	.	.	alt	.	.	PASS	Atlas-SNP
SLC7A8	23428	hgsc.bcm.edu	hg19	14	23634615	23634615	+	Silent	SNP	C	C	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	SLC7A8	NM_012244	exon3	c.G387A	p.V129V	GTAGATCACCAGC	.	41.0	14.0	30.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0391	9692	hgsc.bcm.edu	hg19	14	35735939	35735939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	KIAA0391	NM_014672	exon6	c.A1282G	p.N428D	CTCTTGAATGTCG	.	172.0	59.0	135.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
ARID4A	5926	hgsc.bcm.edu	hg19	14	58832872	58832872	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	ARID4A	NM_002892	exon22	c.A3447T	p.K1149N	CATCAAAGATGGA	.	105.0	24.0	79.0	0.0	.	222	.	.	.	none	.	.	PASS	Atlas-SNP
GTF2A1	2957	hgsc.bcm.edu	hg19	14	81662499	81662499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	GTF2A1	NM_015859	exon6	c.A565G	p.I189V	GTGGTATAACCTG	.	87.0	29.0	58.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
SYNE3	161176	hgsc.bcm.edu	hg19	14	95903278	95903278	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	SYNE3	NM_152592	exon14	c.T2417A	p.F806Y	TGGGAGAAATCTT	.	68.0	18.0	71.0	0.0	.	130	.	.	.	none	.	.	PASS	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28437274	28437274	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	HERC2,colon,carcinoma,+2,3	HERC2	NM_004667	exon53	c.C8284G	p.R2762G	CAGAACGGCCACA	.	60.0	13.0	38.0	0.0	.	501	.	.	.	none	.	.	PASS	Atlas-SNP
CCPG1	9236	hgsc.bcm.edu	hg19	15	55652607	55652607	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	CCPG1	NM_020739	exon8	c.C1364G	p.A455G	TCTTTTGCCTCAA	.	95.0	27.0	83.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
SPESP1	246777	hgsc.bcm.edu	hg19	15	69238832	69238832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	SPESP1	NM_145658	exon2	c.C959T	p.P320L	GTGTTCCACCAGA	.	99.0	30.0	80.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
CHSY1	22856	hgsc.bcm.edu	hg19	15	101718483	101718483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	CHSY1	NM_014918	exon3	c.C1519T	p.L507F	TTGAGAGAAAGGA	.	69.0	19.0	65.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
SRRM2	23524	hgsc.bcm.edu	hg19	16	2819139	2819139	+	Silent	SNP	C	C	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	SRRM2	NM_016333	exon12	c.C7875T	p.S2625S	CTCCTCCTCTTCT	.	46.0	5.0	22.0	0.0	.	263	.	.	.	none	.	.	PASS	Atlas-SNP
NLRC3	197358	hgsc.bcm.edu	hg19	16	3599167	3599167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	NLRC3,colon,carcinoma,0,1	NLRC3	NM_178844	exon14	c.G2578A	p.A860T	TGTTGGCGCAGAG	.	105.0	26.0	55.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
C16orf96	342346	hgsc.bcm.edu	hg19	16	4650116	4650116	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	C16orf96	NM_001145011	exon16	c.C3224G	p.S1075C	CCCGCTCCAGTGC	.	109.0	17.0	74.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
NUDT16L1	84309	hgsc.bcm.edu	hg19	16	4744082	4744082	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	NUDT16L1	NM_032349	exon2	c.T257A	p.L86Q	TGGGCCTGGGCTG	.	75.0	34.0	36.0	0.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
CLEC18A	348174	hgsc.bcm.edu	hg19	16	69988435	69988435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	CLEC18A	NM_001271197	exon4	c.G415A	p.G139R	GCGGCAGGAGAGT	.	284.0	51.0	222.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
CLEC18A	348174	hgsc.bcm.edu	hg19	16	69988436	69988436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	CLEC18A	NM_001271197	exon4	c.G416A	p.G139E	CGGCAGGAGAGTG	.	283.0	52.0	220.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
HYDIN	54768	hgsc.bcm.edu	hg19	16	70977738	70977738	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	HYDIN	NM_001270974	exon42	c.C6646A	p.Q2216K	GGATCTGCACGAG	.	28.0	9.0	22.0	0.0	.	788	.	.	.	none	.	.	PASS	Atlas-SNP
CHMP1A	5119	hgsc.bcm.edu	hg19	16	89715757	89715757	+	Splice_Site	SNP	A	A	G	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	CHMP1A	NM_001083314	exon4	c.232+2T>C	.	GCACTCACCCCCT	.	66.0	19.0	46.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM98	26022	hgsc.bcm.edu	hg19	17	31258638	31258638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	TMEM98,NS,malignant_melanoma,0,1	TMEM98	NM_001033504	exon2	c.A92G	p.Y31C	AGCGCTACTGCCG	.	151.0	69.0	88.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
VMP1	81671	hgsc.bcm.edu	hg19	17	57917269	57917269	+	Silent	SNP	A	A	G	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	VMP1	NM_030938	exon12	c.A1218G	p.K406K	AACTAAATAAGTA	.	173.0	15.0	79.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
COLEC12	81035	hgsc.bcm.edu	hg19	18	321780	321780	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	COLEC12,NS,NS,0,1	COLEC12	NM_130386	exon9	c.C2091G	p.N697K	ACCCCAGTTATCC	.	100.0	29.0	82.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
EID2	163126	hgsc.bcm.edu	hg19	19	40030283	40030283	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	EID2	NM_153232	exon1	c.T437A	p.L146H	ACGCTAAGTGGGT	.	68.0	25.0	43.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
ETFB	2109	hgsc.bcm.edu	hg19	19	51857559	51857559	+	Nonsense_Mutation	SNP	G	G	A	rs374288379		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	ETFB	NM_001014763	exon1	c.C334T	p.R112X	TCACTCGGATCTG	.	37.0	8.0	37.0	0.0	.	46	.	.	.	weak	.	.	PASS	Atlas-SNP
ZNF841	284371	hgsc.bcm.edu	hg19	19	52568431	52568431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	ZNF841	NM_001136499	exon7	c.G2704A	p.E902K	GGTTCTCTCCAGC	.	194.0	59.0	156.0	0.0	.	183	.	.	.	none	.	.	PASS	Atlas-SNP
LAMA5	3911	hgsc.bcm.edu	hg19	20	60904037	60904037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	LAMA5	NM_005560	exon34	c.C4310T	p.P1437L	CCACATGGACGGG	.	67.0	15.0	51.0	0.0	.	268	.	.	.	none	.	.	PASS	Atlas-SNP
MICAL3	57553	hgsc.bcm.edu	hg19	22	18347671	18347671	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	MICAL3	NM_001136004	exon23	c.A2971T	p.T991S	CTGGGGTTCTCTC	.	83.0	26.0	62.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
MYO18B	84700	hgsc.bcm.edu	hg19	22	26351226	26351226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	MYO18B	NM_032608	exon39	c.C6052T	p.R2018W	CAGCAGCGGGAGA	.	94.0	25.0	46.0	0.0	.	322	.	.	.	none	.	.	PASS	Atlas-SNP
FRRS1	391059	hgsc.bcm.edu	hg19	1	100214136	100214149	+	Frame_Shift_Del	DEL	CTGATCTCCTGGCC	CTGATCTCCTGGCC	-	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	CTGATCTCCTGGCC	CTGATCTCCTGGCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	FRRS1	NM_001013660	exon3	c.177_190del	p.59_64del	.	.	131.0	19.0	95.0	0.0	.	50	.	0.145038	0	none	.	.	PASS	Atlas-Indel,Pindel
TSHZ2	128553	hgsc.bcm.edu	hg19	20	51871518	51871519	+	Frame_Shift_Ins	INS	-	-	GATG	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	TSHZ2	NM_173485	exon2	c.1521_1522insGATG	p.E507fs	.	.	58.0	11.0	64.0	0.0	.	209	.	0.189655	0	none	.	.	PASS	Atlas-Indel,Pindel
CPA1	1357	hgsc.bcm.edu	hg19	7	130021580	130021594	+	In_Frame_Del	DEL	ATGAGACCATGATCG	ATGAGACCATGATCG	-	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	ATGAGACCATGATCG	ATGAGACCATGATCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	CPA1	NM_001868	exon3	c.256_270del	p.86_90del	.	.	76.0	14.0	63.0	0.0	.	73	.	0.184211	0	none	.	.	PASS	Atlas-INDEL
FZD7	8324	hgsc.bcm.edu	hg19	2	202900385	202900386	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	FZD7	NM_003507	exon1	c.1014_1015del	p.338_339del	.	.	82.0	12.0	80.0	0.0	.	70	.	0.146341	0	none	.	.	PASS	Atlas-Indel,Pindel
EP300	2033	hgsc.bcm.edu	hg19	22	41545134	41545134	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	EP300	NM_001429	exon13	c.2333delC	p.T778fs	.	.	193.0	58.0	121.0	0.0	.	367	.	0.300518	0	none	.	.	PASS	Atlas-Indel,Pindel
OR6C75	390323	hgsc.bcm.edu	hg19	12	55759766	55759767	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	OR6C75	NM_001005497	exon1	c.872_873insA	p.R291fs	.	.	60.0	18.0	53.0	0.0	.	67	.	0.3	0	none	.	.	PASS	Atlas-Indel,Pindel
C16orf13	84326	hgsc.bcm.edu	hg19	16	684782	684782	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	C16orf13	NM_032366	exon5	c.505delC	p.L169fs	.	.	57.0	12.0	22.0	0.0	.	11	.	0.210526	0	none	.	.	PASS	Atlas-Indel,Pindel
KIAA1244	57221	hgsc.bcm.edu	hg19	6	138615192	138615194	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	KIAA1244	NM_020340	exon20	c.3430_3432del	p.1144_1144del	.	.	121.0	28.0	89.0	0.0	.	236	.	0.231405	0	none	.	.	PASS	Atlas-Indel,Pindel
WDR81	124997	hgsc.bcm.edu	hg19	17	1629728	1629728	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	WDR81	NM_001163809	exon1	c.1474delA	p.I492fs	.	.	93.0	44.0	73.0	0.0	.	180	.	0.473118	0	none	.	.	PASS	Atlas-Indel,Pindel
HLA-DOB	3112	hgsc.bcm.edu	hg19	6	32783066	32783067	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	HLA-DOB	NM_002120	exon2	c.116_117insG	p.A39fs	.	.	121.0	35.0	88.0	0.0	.	17	.	0.289256	0	none	.	.	PASS	Atlas-Indel,Pindel
RALGAPA2	57186	hgsc.bcm.edu	hg19	20	20392748	20392749	+	Frame_Shift_Ins	INS	-	-	GGTTCTGAATTATTGCTTCGAGATACAG	novel		TCGA-Y8-A898-01A-11D-A34Z-10	TCGA-Y8-A898-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8c71a07f-83ad-4612-a896-217d2fde9904	b87bb919-a7fb-44d5-a76a-872cb44c2dc0	.	RALGAPA2	NM_020343	exon38	c.5540_5541insCTGTATCTCGAAGCAATAATTCAGAACC	p.H1847fs	.	.	89.0	11.0	74.0	0.0	.	274	.	0.124	.	none	.	.	PASS	Pindel
