Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
LCE2C	353140	hgsc.bcm.edu	hg19	1	152648496	152648496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	LCE2C	NM_178429	exon2	c.C5T	p.S2F	GCATGTCTTGCCA	.	154.0	77.0	116.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
OLFML2B	25903	hgsc.bcm.edu	hg19	1	161993092	161993092	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	OLFML2B	NM_015441	exon1	c.G129C	p.E43D	CAGAGTCTCGTCC	.	118.0	26.0	131.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
PPP1R12B	4660	hgsc.bcm.edu	hg19	1	202418132	202418132	+	Silent	SNP	C	C	G	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	PPP1R12B	NM_002481	exon13	c.C1683G	p.S561S	CAAATCCCAGGCC	.	125.0	46.0	145.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
KCNH1	3756	hgsc.bcm.edu	hg19	1	210857406	210857406	+	Silent	SNP	C	C	A	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	KCNH1	NM_172362	exon11	c.G2187T	p.L729L	CAAGATCAGGGGG	.	55.0	21.0	56.0	0.0	.	199	.	.	.	none	.	.	PASS	Atlas-SNP
GTF3C2	2976	hgsc.bcm.edu	hg19	2	27556578	27556578	+	Silent	SNP	C	C	T	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	GTF3C2	NM_001521	exon13	c.A1676A	p.H559H	GCCAGGCTAAGGC	.	168.0	10.0	163.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
PASK	23178	hgsc.bcm.edu	hg19	2	242077491	242077491	+	Silent	SNP	C	C	T	rs374396215		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	PASK	NM_015148	exon6	c.G753A	p.T251T	ACATGACGTGACG	.	74.0	5.0	71.0	0.0	.	230	.	.	.	weak	.	.	PASS	Atlas-SNP
DLEC1	9940	hgsc.bcm.edu	hg19	3	38103779	38103779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	DLEC1	NM_007337	exon4	c.G793A	p.D265N	TTCGAAGATGAGT	.	84.0	40.0	110.0	0.0	.	278	.	.	.	none	.	.	PASS	Atlas-SNP
CPNE4	131034	hgsc.bcm.edu	hg19	3	131268825	131268825	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	CPNE4	NM_130808	exon14	c.C1268A	p.S423X	GACGCTGACTTGG	.	139.0	57.0	120.0	0.0	.	112	.	.	.	none	.	.	PASS	Atlas-SNP
RBP1	5947	hgsc.bcm.edu	hg19	3	139236515	139236515	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	RBP1	NM_002899	exon4	c.G548C	p.R183T	TCCACTCTCATCT	.	71.0	11.0	69.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
BOD1L1	259282	hgsc.bcm.edu	hg19	4	13602062	13602062	+	Silent	SNP	C	C	T	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	.	NM_148894	exon10	c.G6462A	p.L2154L	GATAGGCAATTCG	.	57.0	30.0	53.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
WDR19	57728	hgsc.bcm.edu	hg19	4	39233429	39233429	+	Silent	SNP	T	T	G	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	WDR19	NM_025132	exon18	c.T1995G	p.A665A	TGATGCTTGGGAA	.	76.0	39.0	110.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
METTL14	57721	hgsc.bcm.edu	hg19	4	119613212	119613212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	METTL14	NM_020961	exon5	c.T401C	p.I134T	ATTTCATCAGGGA	.	87.0	36.0	69.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
ERBB2IP	55914	hgsc.bcm.edu	hg19	5	65350314	65350314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	ERBB2IP	NM_001253699	exon21	c.G3168A	p.M1056I	GGAAATGTGGGCC	.	95.0	24.0	84.0	0.0	.	120	.	.	.	none	.	.	PASS	Atlas-SNP
DDX46	9879	hgsc.bcm.edu	hg19	5	134109546	134109546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	DDX46	NM_014829	exon5	c.A608G	p.D203G	AGGACGATGATGG	.	300.0	15.0	288.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
VWA7	80737	hgsc.bcm.edu	hg19	6	31740832	31740832	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	.	NM_025258	exon7	c.A986C	p.E329A	TTGATCTCCTCAC	.	60.0	11.0	61.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
HBS1L	10767	hgsc.bcm.edu	hg19	6	135360838	135360838	+	Silent	SNP	T	T	C	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	HBS1L	NM_001145207	exon4	c.A303G	p.L101L	TTCAATTAATATT	.	68.0	31.0	64.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
KCNU1	157855	hgsc.bcm.edu	hg19	8	36694438	36694438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	KCNU1	NM_001031836	exon14	c.C1493A	p.S498Y	TAACATCTCTATT	.	96.0	45.0	86.0	0.0	.	359	.	.	.	none	.	.	PASS	Atlas-SNP
HGSNAT	138050	hgsc.bcm.edu	hg19	8	43048924	43048924	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	HGSNAT	NM_152419	exon14	c.T1402C	p.Y468H	GTGGCCTATGACC	.	98.0	40.0	111.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
PI15	51050	hgsc.bcm.edu	hg19	8	75761353	75761353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	PI15	NM_015886	exon6	c.G642T	p.K214N	TTCTAGGGGCAAT	.	74.0	34.0	75.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
PI15	51050	hgsc.bcm.edu	hg19	8	75761354	75761354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	PI15	NM_015886	exon6	c.G643A	p.G215S	TCTAGGGGCAATT	.	75.0	35.0	75.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
RBM17	84991	hgsc.bcm.edu	hg19	10	6155504	6155504	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	RBM17	NM_001145547	exon9	c.C890G	p.T297S	CGCTGACTGAAAT	.	52.0	19.0	64.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
WAC	51322	hgsc.bcm.edu	hg19	10	28824568	28824568	+	Silent	SNP	T	T	A	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	WAC	NM_100486	exon3	c.T156A	p.P52P	AGATCCTTCACCA	.	192.0	90.0	183.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
SLC16A12	387700	hgsc.bcm.edu	hg19	10	91196029	91196029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	SLC16A12	NM_213606	exon7	c.T1076C	p.M359T	CCATCCATTCCCA	.	124.0	58.0	123.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
MCMBP	79892	hgsc.bcm.edu	hg19	10	121602090	121602090	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	MCMBP	NM_024834	exon10	c.T1024A	p.S342T	ATTCGGACATGAA	.	65.0	32.0	95.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
BTBD16	118663	hgsc.bcm.edu	hg19	10	124066782	124066782	+	Silent	SNP	G	G	A	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	BTBD16	NM_144587	exon10	c.G870A	p.Q290Q	GATTCAGGCAATT	.	115.0	56.0	134.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
CD6	923	hgsc.bcm.edu	hg19	11	60774086	60774086	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	CD6	NM_006725	exon2	c.C90G	p.S30R	CACCAGCAGTGCA	.	70.0	26.0	60.0	0.0	.	122	.	.	.	none	.	.	PASS	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103080609	103080609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	DYNC2H1	NM_001377	exon53	c.C8459T	p.P2820L	AGATACCTGAAAT	.	1840.0	821.0	1697.0	1.0	.	246	.	.	.	none	.	.	PASS	Atlas-SNP
COL4A1	1282	hgsc.bcm.edu	hg19	13	110857716	110857716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	COL4A1	NM_001845	exon17	c.G941A	p.G314D	TGGCGGCCTATGA	.	150.0	6.0	158.0	0.0	.	372	.	.	.	none	.	.	PASS	Atlas-SNP
FAM179B	23116	hgsc.bcm.edu	hg19	14	45542589	45542589	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	FAM179B	NM_015091	exon19	c.A4988T	p.N1663I	TGACAAATAGTGG	.	96.0	49.0	90.0	0.0	.	115	.	.	.	none	.	.	PASS	Atlas-SNP
TSNAXIP1	55815	hgsc.bcm.edu	hg19	16	67860650	67860650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	TSNAXIP1	NM_018430	exon12	c.G1295A	p.S432N	GGCCCAGTGATGC	.	141.0	76.0	104.0	0.0	.	66	.	.	.	none	.	.	PASS	Atlas-SNP
FXR2	9513	hgsc.bcm.edu	hg19	17	7497273	7497273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	FXR2	NM_004860	exon11	c.C1070A	p.A357D	GCCTGGGCATTGC	.	117.0	5.0	63.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
MYH10	4628	hgsc.bcm.edu	hg19	17	8397110	8397110	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	MYH10,NS,carcinoma,0,2	MYH10	NM_001256012	exon32	c.G4150C	p.E1384Q	CCTCCTCCTGCTG	.	74.0	5.0	57.0	2.0	.	148	.	.	.	none	.	.	PASS	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	hg19	17	39240794	39240794	+	Silent	SNP	C	C	T	rs9894106	by2hit2allele;alternate_allele	TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	KRTAP4-7,NS,carcinoma,0,1	KRTAP4-7	NM_033061	exon1	c.C336T	p.P112P	CCGCCCCAGCTGC	.	21.0	5.0	15.0	1.0	.	49	.	.	.	alt	.	.	PASS	Atlas-SNP
HSPB9	94086	hgsc.bcm.edu	hg19	17	40275296	40275296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	HSPB9	NM_033194	exon1	c.C428T	p.P143L	CAGGACCGTCCCC	.	66.0	40.0	35.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
GREB1L	80000	hgsc.bcm.edu	hg19	18	19029545	19029545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	KIAA1772,NS,carcinoma,0,2	GREB1L	NM_001142966	exon12	c.G1468A	p.E490K	CTGAGAGAAAGAG	.	85.0	51.0	80.0	2.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
ABCA7	10347	hgsc.bcm.edu	hg19	19	1059025	1059025	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	ABCA7	NM_019112	exon40	c.T5404A	p.Y1802N	CAGGTATACCGTG	.	116.0	51.0	101.0	0.0	.	174	.	.	.	none	.	.	PASS	Atlas-SNP
ZNRF4	148066	hgsc.bcm.edu	hg19	19	5456739	5456739	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	ZNRF4	NM_181710	exon1	c.G1237C	p.E413Q	TCCCTGGAGGCAG	.	102.0	45.0	104.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF536	9745	hgsc.bcm.edu	hg19	19	31039523	31039523	+	Silent	SNP	A	A	G	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	ZNF536	NM_014717	exon4	c.A2997G	p.A999A	CATTGCATGGCAC	.	56.0	21.0	56.0	0.0	.	424	.	.	.	none	.	.	PASS	Atlas-SNP
PLAC4	191585	hgsc.bcm.edu	hg19	21	42551433	42551433	+	Silent	SNP	G	G	A	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	.	NM_182832	exon1	c.C123T	p.P41P	GTGTCTGGGGTGA	.	72.0	4.0	100.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
GAB4	128954	hgsc.bcm.edu	hg19	22	17472825	17472825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	GAB4	NM_001037814	exon2	c.A416G	p.D139G	TTCATGTCCTCCC	.	85.0	50.0	77.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
MAOA	4128	hgsc.bcm.edu	hg19	X	43603409	43603409	+	Silent	SNP	T	T	C	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	MAOA	NM_000240	exon14	c.T1428C	p.P476P	AGAACCTGAATCA	.	56.0	52.0	62.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66765228	66765228	+	Silent	SNP	A	A	G	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	AR	NM_000044	exon1	c.A240G	p.Q80Q	GCAGCAAGAGACT	.	116.0	15.0	74.0	0.0	.	249	.	.	.	none	.	.	PASS	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66765229	66765229	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	AR	NM_000044	exon1	c.G241C	p.E81Q	CAGCAAGAGACTA	.	116.0	10.0	75.0	0.0	.	249	.	.	.	none	.	.	PASS	Atlas-SNP
RENBP	5973	hgsc.bcm.edu	hg19	X	153207005	153207005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	RENBP	NM_002910	exon8	c.T871C	p.F291L	AGTGGAAGGGCAA	.	168.0	160.0	149.0	0.0	.	69	.	.	.	none	.	.	PASS	Atlas-SNP
NEB	4703	hgsc.bcm.edu	hg19	2	152359933	152359933	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	NEB	NM_001271208	exon167	c.23871delA	p.G7957fs	.	.	91.0	43.0	113.0	0.0	.	1697	.	0.472527	0	none	.	.	PASS	Atlas-INDEL
COL6A2	1292	hgsc.bcm.edu	hg19	21	47545697	47545703	+	Splice_Site	DEL	TTGCAGG	TTGCAGG	-	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	TTGCAGG	TTGCAGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	COL6A2	.	.	.	.	.	.	51.0	20.0	68.0	0.0	.	351	.	0.392157	0	none	.	.	PASS	Atlas-Indel,Pindel
NEB	4703	hgsc.bcm.edu	hg19	2	152359933	152359934	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-Y8-A8S0-01A-11D-A36X-10	TCGA-Y8-A8S0-10A-01D-A370-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1736e012-2ce0-46e4-ab85-bb0e9449a458	44329552-9eea-40f0-9170-8bc9c77aa51e	.	NEB	NM_001271208	exon167	c.23870_23871del	p.7957_7957del	.	.	90.0	22.0	113.0	0.0	.	1697	.	0.244	.	none	.	.	PASS	Pindel
