Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
TAS1R3	83756	hgsc.bcm.edu	hg19	1	1267161	1267161	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	TAS1R3	NM_152228	exon2	c.C335G	p.P112R	TGAAGCCCAGCCT	.	65.0	9.0	82.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
KAZN	23254	hgsc.bcm.edu	hg19	1	15382699	15382699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	KAZN	NM_015209	exon5	c.T839C	p.L280P	CGGACCTCCCGCT	.	170.0	24.0	157.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM51	55092	hgsc.bcm.edu	hg19	1	15545932	15545932	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	TMEM51	NM_018022	exon3	c.C455G	p.P152R	AGAACCCGAGGTT	.	324.0	39.0	286.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
PADI4	23569	hgsc.bcm.edu	hg19	1	17666248	17666248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	PADI4	NM_012387	exon6	c.A592G	p.T198A	AACCATACACTGG	.	89.0	4.0	94.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
C1orf172	126695	hgsc.bcm.edu	hg19	1	27278714	27278714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	C1orf172	NM_152365	exon2	c.A158G	p.H53R	GGCCCATGGTGGC	.	120.0	15.0	87.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
NCDN	23154	hgsc.bcm.edu	hg19	1	36026513	36026513	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	NCDN	NM_014284	exon3	c.C761G	p.P254R	CCGTGCCCCCTGA	.	71.0	13.0	75.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
KDM4A	9682	hgsc.bcm.edu	hg19	1	44128602	44128602	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	KDM4A	NM_014663	exon5	c.T467A	p.I156N	GAACAATCCTGGA	.	198.0	21.0	212.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
LCE4A	199834	hgsc.bcm.edu	hg19	1	152681679	152681679	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	LCE4A,rectum,carcinoma,0,1	LCE4A	NM_178356	exon1	c.C128G	p.S43C	GTGGCTCCAGCTC	.	195.0	13.0	219.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
LCE4A	199834	hgsc.bcm.edu	hg19	1	152681680	152681680	+	Silent	SNP	C	C	T	rs200890315	bycluster	TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	LCE4A,rectum,carcinoma,+1,15	LCE4A	NM_178356	exon1	c.C129T	p.S43S	TGGCTCCAGCTCT	.	192.0	9.0	215.0	1.0	.	37	.	.	.	weak	.	.	PASS	Atlas-SNP
KIAA0040	9674	hgsc.bcm.edu	hg19	1	175129922	175129922	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	KIAA0040	NM_001162895	exon3	c.T228G	p.D76E	TTCTTCATCCTTC	.	62.0	4.0	75.0	0.0	.	2	.	.	.	none	.	.	PASS	Atlas-SNP
KLF11	8462	hgsc.bcm.edu	hg19	2	10192452	10192452	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	KLF11	NM_003597	exon4	c.A1357T	p.K453X	GAGAAGAAGTTTG	.	141.0	22.0	157.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
KLF11	8462	hgsc.bcm.edu	hg19	2	10192453	10192453	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	KLF11	NM_003597	exon4	c.A1358T	p.K453M	AGAAGAAGTTTGT	.	137.0	22.0	157.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
SMC6	79677	hgsc.bcm.edu	hg19	2	17888505	17888505	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	SMC6	NM_001142286	exon18	c.G1987C	p.D663H	CCACATCTCTGCT	.	117.0	19.0	158.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
NCL	4691	hgsc.bcm.edu	hg19	2	232325414	232325414	+	Missense_Mutation	SNP	T	T	A	rs199689485	bycluster	TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	NCL	NM_005381	exon4	c.A777T	p.E259D	ATCATCTTCATCA	.	69.0	10.0	65.0	0.0	.	80	.	.	.	weak	.	.	PASS	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	hg19	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	KIF1A	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	167.0	8.0	151.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF619	285267	hgsc.bcm.edu	hg19	3	40528724	40528724	+	Silent	SNP	C	C	T	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	ZNF619	NM_001145082	exon6	c.C843T	p.F281F	AACCTTCAGATAT	.	128.0	19.0	129.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
TMIE	259236	hgsc.bcm.edu	hg19	3	46751076	46751076	+	Missense_Mutation	SNP	G	G	T	rs75020261	bycluster	TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	TMIE	NM_147196	exon4	c.G369T	p.K123N	GGATAAGAAGAAG	.	217.0	17.0	199.0	0.0	.	16	.	.	.	weak	.	.	PASS	Atlas-SNP
CELSR3	1951	hgsc.bcm.edu	hg19	3	48690465	48690465	+	Silent	SNP	A	A	T	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	CELSR3	NM_001407	exon10	c.T5604A	p.L1868L	GACCATAAGGACA	.	141.0	19.0	109.0	0.0	.	237	.	.	.	none	.	.	PASS	Atlas-SNP
EPHA3	2042	hgsc.bcm.edu	hg19	3	89498468	89498468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	EPHA3	NM_005233	exon14	c.C2440T	p.L814F	ATTGTTCTCTGGG	.	170.0	26.0	166.0	0.0	.	501	.	.	.	none	.	.	PASS	Atlas-SNP
OR5H14	403273	hgsc.bcm.edu	hg19	3	97868711	97868711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	OR5H14,NS,carcinoma,0,1	OR5H14	NM_001005514	exon1	c.G482A	p.G161E	ATGAAGGATTTTT	.	248.0	31.0	216.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
PDS5A	23244	hgsc.bcm.edu	hg19	4	39910143	39910143	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	PDS5A	NM_001100399	exon11	c.T1105C	p.S369P	CATGTGATCTAAC	.	92.0	15.0	83.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
HNRPDL	9987	hgsc.bcm.edu	hg19	4	83350434	83350434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	HNRPDL	NM_031372	exon1	c.A410G	p.K137R	TTGATCTTGGATC	.	84.0	9.0	100.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
SV2C	22987	hgsc.bcm.edu	hg19	5	75596667	75596667	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	SV2C	NM_014979	exon11	c.T1750G	p.F584V	ATTTATTTTGTCA	.	125.0	18.0	131.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
AFAP1L1	134265	hgsc.bcm.edu	hg19	5	148679111	148679111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	AFAP1L1	NM_001146337	exon2	c.G56T	p.S19I	TGCTCAGCCTCCT	.	88.0	5.0	73.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
HIST1H1B	3009	hgsc.bcm.edu	hg19	6	27834701	27834701	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	HIST1H1B	NM_005322	exon1	c.C607G	p.P203A	CTTTGGGCTTTGC	.	138.0	8.0	139.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
GABBR1	2550	hgsc.bcm.edu	hg19	6	29581105	29581105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	GABBR1	NM_001470	exon12	c.G1481A	p.R494H	TCCAGGCGCACAC	.	160.0	22.0	200.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
B3GALT4	8705	hgsc.bcm.edu	hg19	6	33246172	33246172	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	B3GALT4	NM_003782	exon1	c.A976C	p.K326Q	TATGGGAAATTCC	.	62.0	7.0	79.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38843576	38843576	+	Silent	SNP	C	C	A	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	DNAH8	NM_001206927	exon53	c.C7830A	p.T2610T	TCAAACCATGTAT	.	111.0	13.0	150.0	0.0	.	1239	.	.	.	none	.	.	PASS	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	hg19	6	51924822	51924822	+	Silent	SNP	G	G	A	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	PKHD1	NM_170724	exon15	c.C1137T	p.F379F	CACAAAGAACCCA	.	75.0	12.0	88.0	0.0	.	927	.	.	.	none	.	.	PASS	Atlas-SNP
UTRN	7402	hgsc.bcm.edu	hg19	6	144724303	144724303	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	UTRN	NM_007124	exon2	c.A124T	p.N42Y	TGGATAAATGCTC	.	116.0	19.0	102.0	0.0	.	327	.	.	.	none	.	.	PASS	Atlas-SNP
GRM1	2911	hgsc.bcm.edu	hg19	6	146678763	146678763	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	GRM1	NM_000838	exon6	c.T1535C	p.I512T	ACAAAATCCAGAT	.	120.0	18.0	132.0	0.0	.	419	.	.	.	none	.	.	PASS	Atlas-SNP
ZKSCAN1	7586	hgsc.bcm.edu	hg19	7	99631136	99631136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	ZKSCAN1	NM_003439	exon6	c.G1008T	p.K336N	AGGAAAGGACAAA	.	172.0	37.0	184.0	0.0	.	59	.	.	.	none	.	.	PASS	Atlas-SNP
ARMC10	83787	hgsc.bcm.edu	hg19	7	102738803	102738803	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	ARMC10,NS,carcinoma,0,2	ARMC10	NM_031905	exon7	c.C835T	p.R279X	CTTCTTCGAGTAC	.	475.0	23.0	521.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
RBM33	155435	hgsc.bcm.edu	hg19	7	155473562	155473562	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	RBM33	NM_053043	exon5	c.T527A	p.V176E	ATGAAGTGTTAGA	.	154.0	17.0	160.0	0.0	.	157	.	.	.	none	.	.	PASS	Atlas-SNP
TEX15	56154	hgsc.bcm.edu	hg19	8	30700777	30700777	+	Silent	SNP	T	T	C	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	TEX15	NM_031271	exon1	c.A5757G	p.R1919R	ATTCACTCTGAGT	.	114.0	11.0	110.0	0.0	.	350	.	.	.	none	.	.	PASS	Atlas-SNP
STMN2	11075	hgsc.bcm.edu	hg19	8	80567258	80567258	+	Silent	SNP	G	G	A	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	STMN2	NM_007029	exon4	c.G441A	p.E147E	CCGTGAGGCTAAT	.	130.0	17.0	131.0	0.0	.	23	.	.	.	none	.	.	PASS	Atlas-SNP
DOCK8	81704	hgsc.bcm.edu	hg19	9	441400	441400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	DOCK8	NM_203447	exon41	c.G5338T	p.D1780Y	GCCTTCGACAGCA	.	70.0	6.0	88.0	0.0	.	401	.	.	.	none	.	.	PASS	Atlas-SNP
TPD52L3	89882	hgsc.bcm.edu	hg19	9	6328657	6328657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	TPD52L3	NM_033516	exon1	c.T62C	p.L21P	CTGAACTGGAGGA	.	115.0	18.0	118.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF503	84858	hgsc.bcm.edu	hg19	10	77161118	77161118	+	Silent	SNP	G	G	T	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	ZNF503	NM_032772	exon1	c.C60A	p.G20G	TCCGCCGCCGCCG	.	27.0	6.0	36.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF503	84858	hgsc.bcm.edu	hg19	10	77161124	77161124	+	Silent	SNP	G	G	T	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	ZNF503	NM_032772	exon1	c.C54A	p.G18G	GCCGCCGCCGCCG	.	24.0	6.0	34.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	hg19	11	1248326	1248326	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	MUC5B	NM_002458	exon5	c.G527C	p.S176T	AGGTCAGCATCCG	.	125.0	15.0	164.0	0.0	.	473	.	.	.	none	.	.	PASS	Atlas-SNP
UBQLN3	50613	hgsc.bcm.edu	hg19	11	5530266	5530266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	UBQLN3	NM_017481	exon2	c.C523A	p.P175T	TGAAGGGGTCATC	.	120.0	16.0	120.0	0.0	.	107	.	.	.	none	.	.	PASS	Atlas-SNP
ATXN2	6311	hgsc.bcm.edu	hg19	12	111991980	111991980	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	ATXN2	NM_002973	exon3	c.T810A	p.H270Q	AAGTATATGAACC	.	40.0	7.0	56.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
SBNO1	55206	hgsc.bcm.edu	hg19	12	123829975	123829975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	SBNO1	NM_001167856	exon3	c.C380T	p.T127I	CTTGCAGTAGTCT	.	236.0	29.0	202.0	0.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35738623	35738623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	NBEA	NM_015678	exon24	c.C4210A	p.L1404I	CCTTTGCTCTCTG	.	113.0	10.0	113.0	0.0	.	340	.	.	.	none	.	.	PASS	Atlas-SNP
MYH6	4624	hgsc.bcm.edu	hg19	14	23866283	23866283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	MYH6	NM_002471	exon18	c.T2057C	p.M686T	TTGTCCATCACCC	.	69.0	9.0	79.0	0.0	.	274	.	.	.	none	.	.	PASS	Atlas-SNP
ATG2B	55102	hgsc.bcm.edu	hg19	14	96788562	96788562	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	ATG2B,NS,carcinoma,0,1	ATG2B	NM_018036	exon18	c.G2766C	p.M922I	TTCTGTCATTTCT	.	138.0	21.0	117.0	0.0	.	169	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88501405	88501405	+	Silent	SNP	C	C	T	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	ZNF469	NM_001127464	exon2	c.C7443T	p.A2481A	AGCGGCCTTGCCT	.	106.0	13.0	100.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88501409	88501409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	ZNF469	NM_001127464	exon2	c.C7447A	p.P2483T	GCCTTGCCTGCTC	.	106.0	13.0	108.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
MED1	5469	hgsc.bcm.edu	hg19	17	37565772	37565772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	MED1	NM_004774	exon17	c.A2702G	p.Q901R	AGTGCCTGAGATG	.	136.0	14.0	143.0	0.0	.	123	.	.	.	none	.	.	PASS	Atlas-SNP
KANSL1	284058	hgsc.bcm.edu	hg19	17	44248467	44248467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	.	NM_001193466	exon2	c.G1043T	p.R348L	GCCTTTCGAGTCA	.	60.0	9.0	42.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
IMPACT	55364	hgsc.bcm.edu	hg19	18	22020542	22020542	+	Silent	SNP	G	G	C	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	IMPACT	NM_018439	exon6	c.G450C	p.S150S	AAGTTCGCTTAAA	.	130.0	16.0	133.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
DYM	54808	hgsc.bcm.edu	hg19	18	46889546	46889546	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	DYM	NM_017653	exon6	c.C479G	p.T160S	ATATCAGTGATCA	.	219.0	37.0	287.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
STAP2	55620	hgsc.bcm.edu	hg19	19	4332020	4332020	+	Missense_Mutation	SNP	T	T	G	rs74464159	bycluster;alternate_allele	TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	STAP2	NM_001013841	exon4	c.A353C	p.E118A	CTTACCTCCACCA	.	131.0	12.0	144.0	0.0	.	38	.	.	.	alt	.	.	PASS	Atlas-SNP
TRIP10	9322	hgsc.bcm.edu	hg19	19	6744841	6744841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	TRIP10	NM_004240	exon9	c.T820C	p.S274P	CACAAGTCAGGTT	.	95.0	13.0	85.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
PRR12	57479	hgsc.bcm.edu	hg19	19	50119450	50119450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	PRR12	NM_020719	exon9	c.C5471T	p.S1824F	CGGAGTCCTCCCC	.	146.0	10.0	172.0	0.0	.	157	.	.	.	none	.	.	PASS	Atlas-SNP
NLRP11	204801	hgsc.bcm.edu	hg19	19	56297223	56297223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	NLRP11	NM_145007	exon12	c.G2870A	p.G957D	TTCAGGCCAGTTA	.	126.0	16.0	135.0	0.0	.	139	.	.	.	none	.	.	PASS	Atlas-SNP
MYBL2	4605	hgsc.bcm.edu	hg19	20	42338684	42338684	+	Silent	SNP	C	C	T	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	MYBL2	NM_002466	exon10	c.C1587T	p.Y529Y	GAAGTACGGACCC	.	130.0	6.0	164.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
PMEPA1	56937	hgsc.bcm.edu	hg19	20	56284608	56284608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	PMEPA1	NM_020182	exon1	c.G31A	p.A11T	CGGCGGCGGTGCT	.	124.0	6.0	140.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
SHROOM3	57619	hgsc.bcm.edu	hg19	4	77661777	77661777	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	SHROOM3	NM_020859	exon5	c.2450delC	p.T817fs	.	.	141.0	15.0	130.0	0.0	.	134	.	0.106383	0	none	.	.	PASS	Atlas-Indel,Pindel
TMF1	7110	hgsc.bcm.edu	hg19	3	69097304	69097307	+	Frame_Shift_Del	DEL	TTCT	TTCT	-	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	TTCT	TTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	TMF1	NM_007114	exon2	c.550_553del	p.184_185del	.	.	165.0	19.0	188.0	0.0	.	77	.	0.115152	0	none	.	.	PASS	Atlas-Indel,Pindel
HIST1H1B	3009	hgsc.bcm.edu	hg19	6	27834657	27834701	+	In_Frame_Del	DEL	CTTTGCAGCTTTAGGTTTTGCTGCTTTGGGCTTAGCGGCTTTGGG	CTTTGCAGCTTTAGGTTTTGCTGCTTTGGGCTTAGCGGCTTTGGG	-	novel		TCGA-Y8-A8S1-01A-11D-A36X-10	TCGA-Y8-A8S1-10A-01D-A370-10	CTTTGCAGCTTTAGGTTTTGCTGCTTTGGGCTTAGCGGCTTTGGG	CTTTGCAGCTTTAGGTTTTGCTGCTTTGGGCTTAGCGGCTTTGGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	5c980b27-02f4-4e7d-bc5f-59809f2cbfd0	99aa2435-d52d-45ef-a896-64a90cac0ad3	.	HIST1H1B	NM_005322	exon1	c.608_652del	p.203_218del	.	.	130.0	11.0	128.0	0.0	.	54	.	0.085	.	none	.	.	PASS	Pindel
