Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	ACHILLES_Lineage_Results_Top_Genes	CGC_CancerGermlineMut	CGC_CancerMolecularGenetics	CGC_CancerSomaticMut	CGC_CancerSyndrome	CGC_Chr	CGC_ChrBand	CGC_GeneID	CGC_Name	CGC_OtherGermlineMut	CGC_TissueType	COSMIC_n_overlapping_mutations	COSMIC_overlapping_mutation_descriptions	ClinVar_ASSEMBLY	ClinVar_HGMD_ID	ClinVar_SYM	ClinVar_TYPE	ClinVar_rs	Ensembl_so_accession	Ensembl_so_term	Familial_Cancer_Genes_Reference	Familial_Cancer_Genes_Synonym	annotation_transcript	bcgsc	broad	build	ccds_id	dbNSFP_1000Gp1_AC	dbNSFP_1000Gp1_AF	dbNSFP_1000Gp1_AFR_AC	dbNSFP_1000Gp1_AFR_AF	dbNSFP_1000Gp1_AMR_AC	dbNSFP_1000Gp1_AMR_AF	dbNSFP_1000Gp1_ASN_AC	dbNSFP_1000Gp1_ASN_AF	dbNSFP_1000Gp1_EUR_AC	dbNSFP_1000Gp1_EUR_AF	dbNSFP_Ancestral_allele	dbNSFP_CADD_phred	dbNSFP_CADD_raw	dbNSFP_CADD_raw_rankscore	dbNSFP_ESP6500_AA_AF	dbNSFP_ESP6500_EA_AF	dbNSFP_Ensembl_geneid	dbNSFP_Ensembl_transcriptid	dbNSFP_FATHMM_pred	dbNSFP_FATHMM_rankscore	dbNSFP_FATHMM_score	dbNSFP_GERP_NR	dbNSFP_GERP_RS	dbNSFP_GERP_RS_rankscore	dbNSFP_Interpro_domain	dbNSFP_LRT_Omega	dbNSFP_LRT_converted_rankscore	dbNSFP_LRT_pred	dbNSFP_LRT_score	dbNSFP_LR_pred	dbNSFP_LR_rankscore	dbNSFP_LR_score	dbNSFP_MutationAssessor_pred	dbNSFP_MutationAssessor_rankscore	dbNSFP_MutationAssessor_score	dbNSFP_MutationTaster_converted_rankscore	dbNSFP_MutationTaster_pred	dbNSFP_MutationTaster_score	dbNSFP_Polyphen2_HDIV_pred	dbNSFP_Polyphen2_HDIV_rankscore	dbNSFP_Polyphen2_HDIV_score	dbNSFP_Polyphen2_HVAR_pred	dbNSFP_Polyphen2_HVAR_rankscore	dbNSFP_Polyphen2_HVAR_score	dbNSFP_RadialSVM_pred	dbNSFP_RadialSVM_rankscore	dbNSFP_RadialSVM_score	dbNSFP_Reliability_index	dbNSFP_SIFT_converted_rankscore	dbNSFP_SIFT_pred	dbNSFP_SIFT_score	dbNSFP_SLR_test_statistic	dbNSFP_SiPhy_29way_logOdds	dbNSFP_SiPhy_29way_logOdds_rankscore	dbNSFP_SiPhy_29way_pi	dbNSFP_UniSNP_ids	dbNSFP_Uniprot_aapos	dbNSFP_Uniprot_acc	dbNSFP_Uniprot_id	dbNSFP_aaalt	dbNSFP_aapos	dbNSFP_aapos_FATHMM	dbNSFP_aapos_SIFT	dbNSFP_aaref	dbNSFP_cds_strand	dbNSFP_codonpos	dbNSFP_folddegenerate	dbNSFP_genename	dbNSFP_hg18_pos1coor	dbNSFP_phastCons100way_vertebrate	dbNSFP_phastCons100way_vertebrate_rankscore	dbNSFP_phastCons46way_placental	dbNSFP_phastCons46way_placental_rankscore	dbNSFP_phastCons46way_primate	dbNSFP_phastCons46way_primate_rankscore	dbNSFP_phyloP100way_vertebrate	dbNSFP_phyloP100way_vertebrate_rankscore	dbNSFP_phyloP46way_placental	dbNSFP_phyloP46way_placental_rankscore	dbNSFP_phyloP46way_primate	dbNSFP_phyloP46way_primate_rankscore	dbNSFP_refcodon	entrez_gene_id	external_id_capture	gencode_transcript_name	gencode_transcript_status	gencode_transcript_tags	gencode_transcript_type	gene_type	havana_transcript	hgsc	igv_bad	ucsc	t_alt_count	t_ref_count	n_alt_count	n_ref_count	validation_judgement_rna	validation_power_rna	validation_tumor_alt_count_rna	validation_tumor_ref_count_rna	validation_normal_alt_count_rna	validation_normal_ref_count_rna	min_val_count_rna	validation_judgement_targeted	validation_power_targeted	validation_tumor_alt_count_targeted	validation_tumor_ref_count_targeted	validation_normal_alt_count_targeted	validation_normal_ref_count_targeted	min_val_count_targeted	validation_judgement_localAssembly	validation_power_localAssembly	t_alt_count_localAssembly	t_ref_count_localAssembly	n_alt_count_localAssembly	n_ref_count_localAssembly	min_val_count_localAssembly	validation_judgement_KRAS	validation_power_KRAS	t_alt_count_KRAS	t_ref_count_KRAS	n_alt_count_KRAS	n_ref_count_KRAS	min_val_count_KRAS	pon_loglike	pon_pass_loglike	localAssembly_detected	ExAC_AN	ExAC_AC	ExAC_LQ	passExAC	SCNA_NA	SCNA_NB	SCNA_q_hat	SCNA_tau	IS_SCNA	purity	ploidy	dna_fraction_in_tumor	CCF_hat	CCF_CI95_low	CCF_CI95_high	CCF_mode	CCF_mean	CCF_median	clonal	CCF_CI_low	CCF_CI_high
CTNND1	1500	broad.mit.edu	37	11	57582920	57582920	+	Frame_Shift_Del	DEL	G	G	-			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08			G	-	G	G		Valid	Somatic	Phase_I	WXS	RNA			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr11:57582920delG	ENST00000399050.4	+	19	3292	c.2756delG	c.(2755-2757)cgafs	p.R919fs	CTNND1_ENST00000534579.1_Frame_Shift_Del_p.R859fs|CTNND1_ENST00000361332.4_Frame_Shift_Del_p.R913fs|CTNND1_ENST00000529873.1_Frame_Shift_Del_p.R838fs|CTNND1_ENST00000426142.2_Frame_Shift_Del_p.R812fs|CTNND1_ENST00000526938.1_Frame_Shift_Del_p.R898fs|CTNND1_ENST00000530748.1_Frame_Shift_Del_p.R865fs|CTNND1_ENST00000532245.1_Frame_Shift_Del_p.R812fs|CTNND1_ENST00000533667.1_Frame_Shift_Del_p.R569fs|CTNND1_ENST00000532463.1_Frame_Shift_Del_p.R812fs|CTNND1_ENST00000525902.1_Frame_Shift_Del_p.R596fs|CTNND1_ENST00000532787.1_Frame_Shift_Del_p.R791fs|CTNND1_ENST00000415361.2_Frame_Shift_Del_p.R818fs|CTNND1_ENST00000528621.1_Frame_Shift_Del_p.R859fs|CTNND1_ENST00000361796.4_Frame_Shift_Del_p.R913fs|CTNND1_ENST00000428599.2_Frame_Shift_Del_p.R913fs|CTNND1_ENST00000527467.1_Frame_Shift_Del_p.R596fs|CTNND1_ENST00000532844.1_Frame_Shift_Del_p.R865fs|CTNND1_ENST00000358694.6_Frame_Shift_Del_p.R913fs|CTNND1_ENST00000530094.1_Frame_Shift_Del_p.R812fs|CTNND1_ENST00000529986.1_Frame_Shift_Del_p.R812fs|CTNND1_ENST00000361391.6_Frame_Shift_Del_p.R892fs|CTNND1_ENST00000524630.1_Frame_Shift_Del_p.R913fs|CTNND1_ENST00000360682.6_Frame_Shift_Del_p.R898fs|CTNND1_ENST00000399039.4_Frame_Shift_Del_p.R919fs|CTNND1_ENST00000529919.1_Frame_Shift_Del_p.R919fs|CTNND1_ENST00000528232.1_Frame_Shift_Del_p.R818fs|CTNND1_ENST00000526772.1_Frame_Shift_Del_p.R590fs|CTNND1_ENST00000531014.1_Frame_Shift_Del_p.R590fs|CTNND1_ENST00000526357.1_Frame_Shift_Del_p.R859fs|CTNND1_ENST00000529526.1_Frame_Shift_Del_p.R859fs|CTNND1_ENST00000532649.1_Frame_Shift_Del_p.R859fs	NM_001085458.1	NP_001078927.1	O60716	CTND1_HUMAN	catenin (cadherin-associated protein), delta 1			45		all_epithelial(135;0.155)			ACACTGGATCGATCGGGGGAT	0.393000																								0							SO:0001589	frameshift_variant			ENST00000399050.4	0	1	hg19	CCDS44604.1																																																																																				TCGA-2J-AABK-01A-31D-A40W-08	CTNND1-006	KNOWN	basic|CCDS	protein_coding	protein_coding	OTTHUMT00000393944.1	1	0	0	9	101	0	11	1	9.999980e-01	44	341	0	11	2	0	0	0	0	0	0		1	0.995277	9	103	0	12	2								-13.977320	1	1	0	0		1	0	0	0	1.944851	0	0.200000	1.880000	0.164927	0.780000	0.390000	1.000000	1.000000	0.779986	0.780000	0	0.560000	1.000000
SORCS1	114815	broad.mit.edu	37	10	108434807	108434807	+	Splice_Site	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08			G	A	G	G		Valid	Somatic	Phase_I	WXS	targeted			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr10:108434807G>A	ENST00000263054.6	-	14	1947	c.1940C>T	c.(1939-1941)aCa>aTa	p.T647I	SORCS1_ENST00000344440.6_Splice_Site_p.T647I|SORCS1_ENST00000369698.1_Splice_Site_p.T182I	NM_001206570.1|NM_052918.4	NP_001193499.1|NP_443150.3	Q8WY21	SORC1_HUMAN	sortilin-related VPS10 domain containing receptor 1			127		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)			TTCAACTTACGTCATGATGAG	0.403000																								0							SO:0001630	splice_region_variant			ENST00000263054.6	1	0	hg19	CCDS7559.1	.	.	.	.	.	.	.	.	.	.	G	27.0	4.787704	0.90367	.	.	ENSG00000108018	ENST00000369698;ENST00000263054;ENST00000344440	T;T;T	0.38560	1.13;1.13;1.13	5.92	5.92	0.95590	VPS10 (1);	0.000000	0.85682	D	0.000000	T	0.69043	0.3067	M	0.79805	2.47	0.58432	D	0.999999	D;D;D;D;D	0.89917	1.0;1.0;1.0;1.0;1.0	D;D;D;D;D	0.97110	0.999;1.0;1.0;0.999;1.0	T	0.68006	-0.5523	9	.	.	.	-13.2981	20.3206	0.98668	0.0:0.0:1.0:0.0	.	647;647;647;647;647	A8K182;Q8WY21-4;Q8WY21-3;Q8WY21;Q8WY21-2	.;.;.;SORC1_HUMAN;.	I	182;647;647	ENSP00000358712:T182I;ENSP00000263054:T647I;ENSP00000345964:T647I	.	T	-	2	0	SORCS1	108424797	1.000000	0.71417	1.000000	0.80357	0.953000	0.61014	7.628000	0.83189	2.809000	0.96659	0.655000	0.94253	ACA		TCGA-2J-AABK-01A-31D-A40W-08	SORCS1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000050232.4	1	0	1	38	344	0	81	0	0	0	1	0	81	2	1	1	68	633	0	633	2	1	1.000000	38	344	0	81	2								-13.466610	1	1	121412	1	31	1	1	2	3	2.048293	0	0.200000	1.880000	0.207136	0.990000	0.730000	1.000000	1.000000	0.949924	0.990000	1	0.860000	1.000000
AHNAK	79026	broad.mit.edu	37	11	62293318	62293318	+	Silent	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr11:62293318G>A	ENST00000378024.4	-	5	8845	c.8571C>T	c.(8569-8571)ggC>ggT	p.G2857G	AHNAK_ENST00000530124.1_Intron|AHNAK_ENST00000257247.7_Intron	NM_001620.1	NP_001611.1	Q09666	AHNK_HUMAN	AHNAK nucleoprotein			268		Melanoma(852;0.155)			CTACCTTAGGGCCTGTAACAT	0.453000																								0							SO:0001819	synonymous_variant			ENST00000378024.4	1	1	hg19	CCDS31584.1																																																																																				TCGA-2J-AABK-01A-31D-A40W-08	AHNAK-005	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000395572.1	1	0	0	32	730	0	231	1	3.412846e-01	6	22	0	231	2		0	0	0	0	0	2	1	1.000000	32	722	0	226	2								-4.473745	1	1	0	0		1	0	0	0	1.944851	0	0.200000	1.880000	0.164927	0.400000	0.270000	0.550000	0.400000	0.411049	0.400000	0	0.330000	0.480000
AHNAK	79026	broad.mit.edu	37	11	62296207	62296207	+	Silent	SNP	A	A	T			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr11:62296207A>T	ENST00000378024.4	-	5	5956	c.5682T>A	c.(5680-5682)ccT>ccA	p.P1894P	AHNAK_ENST00000530124.1_Intron|AHNAK_ENST00000257247.7_Intron	NM_001620.1	NP_001611.1	Q09666	AHNK_HUMAN	AHNAK nucleoprotein			268		Melanoma(852;0.155)			GCTCAACATCAGGCACCTCCA	0.517000																								0							SO:0001819	synonymous_variant			ENST00000378024.4	1	1	hg19	CCDS31584.1																																																																																				TCGA-2J-AABK-01A-31D-A40W-08	AHNAK-005	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000395572.1	0	0	0	33	824	1	201	0	3.183208e-01	1	28	1	201	2		0	0	0	0	0	2	1	0.994892	32	810	1	195	16								-3.507129	1	1	0	0		1	0	0	0	1.944851	0	0.200000	1.880000	0.164927	0.360000	0.250000	0.500000	0.370000	0.376947	0.360000	0	0.300000	0.440000
DCHS1	8642	broad.mit.edu	37	11	6653418	6653418	+	Missense_Mutation	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr11:6653418G>A	ENST00000299441.3	-	6	3736	c.3325C>T	c.(3325-3327)Ccc>Tcc	p.P1109S	RP11-732A19.6_ENST00000526633.1_RNA	NM_003737.2	NP_003728.1	Q96JQ0	PCD16_HUMAN	dachsous cadherin-related 1			103		Medulloblastoma(188;0.00263)|all_neural(188;0.026)			AGGAAGGTGGGATCCTCAGAC	0.607000																								0							SO:0001583	missense			ENST00000299441.3	0	1	hg19	CCDS7771.1	.	.	.	.	.	.	.	.	.	.	G	12.06	1.825234	0.32237	.	.	ENSG00000166341	ENST00000299441	T	0.05258	3.47	4.66	4.66	0.58398	Cadherin (3);Cadherin-like (1);	0.000000	0.46145	D	0.000310	T	0.07458	0.0188	N	0.03608	-0.345	0.32893	D	0.512082	D	0.69078	0.997	D	0.75484	0.986	T	0.38972	-0.9636	10	0.13108	T	0.6	.	12.2061	0.54353	0.0:0.0:0.8297:0.1703	.	1109	Q96JQ0	PCD16_HUMAN	S	1109	ENSP00000299441:P1109S	ENSP00000299441:P1109S	P	-	1	0	DCHS1	6609994	1.000000	0.71417	1.000000	0.80357	0.997000	0.91878	4.514000	0.60482	2.584000	0.87258	0.561000	0.74099	CCC		TCGA-2J-AABK-01A-31D-A40W-08	DCHS1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000257258.1	1	0	0	5	104	0	16	0	9.656781e-03	0	3	0	16	2		0	0	0	0	0	2	1	0.937528	5	103	0	16	2								-8.424241	1	1	0	0		1	0	0	0	1.944851	0	0.200000	1.880000	0.164927	0.460000	0.180000	0.890000	0.430000	0.492451	0.460000	0	0.290000	0.680000
WSCD2	9671	broad.mit.edu	37	12	108604027	108604027	+	Silent	SNP	C	C	T			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr12:108604027C>T	ENST00000332082.4	+	5	1445	c.627C>T	c.(625-627)ggC>ggT	p.G209G	WSCD2_ENST00000549903.1_Silent_p.G209G|WSCD2_ENST00000261400.3_Silent_p.G209G|WSCD2_ENST00000547525.1_Silent_p.G209G			Q2TBF2	WSCD2_HUMAN	WSC domain containing 2			57					TGTGCGGCGGCGCCAACCGCC	0.682000																								0							SO:0001819	synonymous_variant			ENST00000332082.4	0	1	hg19	CCDS41828.1																																																																																				TCGA-2J-AABK-01A-31D-A40W-08	WSCD2-002	KNOWN	alternative_5_UTR|basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000405554.1	0	0	0	5	62	0	14		0	0	0	0	14	2		0	0	0	0	0	2	1	0.923500	4	57	0	13	2								-10.123470	1	1	115198	4	32	1	0	0	0	2.002578	0	0.200000	1.880000	0.188641	0.750000	0.300000	1.000000	1.000000	0.748254	0.750000	0	0.490000	1.000000
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	rs121913529		TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08			C	A	C	C		Valid	Somatic	Phase_I	WXS	targeted			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr12:25398284C>A	ENST00000256078.4	-	2	98	c.35G>T	c.(34-36)gGt>gTt	p.G12V	KRAS_ENST00000556131.1_Missense_Mutation_p.G12V|KRAS_ENST00000557334.1_Missense_Mutation_p.G12V|KRAS_ENST00000311936.3_Missense_Mutation_p.G12V	NM_033360.2	NP_203524.1	P01116	RASK_HUMAN	Kirsten rat sarcoma viral oncogene homolog	p.G12D(8562)|p.G12V(5775)|p.G12A(1407)|p.G12F(46)|p.G12L(8)|p.G12I(4)|p.G12E(3)|p.G12W(3)|p.G12Y(2)|p.G12fs*3(1)|p.G12C(1)|p.G12N(1)	UBE2L3/KRAS(2)	25349	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)		GCCTACGCCACCAGCTCCAAC	0.348000	G12A(KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12A(KPNSI9S_AUTONOMIC_GANGLIA)|G12A(MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12A(NCIH1573_LUNG)|G12A(NCIH2009_LUNG)|G12A(RERFLCAD1_LUNG)|G12A(RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12A(SW1116_LARGE_INTESTINE)|G12D(AGS_STOMACH)|G12D(ASPC1_PANCREAS)|G12D(COLO678_LARGE_INTESTINE)|G12D(HEC1A_ENDOMETRIUM)|G12D(HEC50B_ENDOMETRIUM)|G12D(HEYA8_OVARY)|G12D(HPAC_PANCREAS)|G12D(HPAFII_PANCREAS)|G12D(KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12D(KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12D(KP4_PANCREAS)|G12D(L33_PANCREAS)|G12D(LS180_LARGE_INTESTINE)|G12D(LS513_LARGE_INTESTINE)|G12D(MCAS_OVARY)|G12D(PANC0203_PANCREAS)|G12D(PANC0403_PANCREAS)|G12D(PANC0504_PANCREAS)|G12D(PANC0813_PANCREAS)|G12D(PANC1_PANCREAS)|G12D(PK1_PANCREAS)|G12D(PK59_PANCREAS)|G12D(SKLU1_LUNG)|G12D(SNUC2A_LARGE_INTESTINE)|G12D(SU8686_PANCREAS)|G12D(SUIT2_PANCREAS)|G12D(SW1990_PANCREAS)|G12V(A498_KIDNEY)|G12V(CAPAN2_PANCREAS)|G12V(CFPAC1_PANCREAS)|G12V(COLO668_LUNG)|G12V(CORL23_LUNG)|G12V(DANG_PANCREAS)|G12V(HCC56_LARGE_INTESTINE)|G12V(HUPT4_PANCREAS)|G12V(KP3_PANCREAS)|G12V(LCLC97TM1_LUNG)|G12V(NCIH2444_LUNG)|G12V(NCIH441_LUNG)|G12V(NCIH727_LUNG)|G12V(PANC0327_PANCREAS)|G12V(PATU8902_PANCREAS)|G12V(PATU8988S_PANCREAS)|G12V(QGP1_PANCREAS)|G12V(RCM1_LARGE_INTESTINE)|G12V(RERFLCAD2_LUNG)|G12V(RKN_OVARY)|G12V(SH10TC_STOMACH)|G12V(SHP77_LUNG)|G12V(SNGM_ENDOMETRIUM)|G12V(SW403_LARGE_INTESTINE)|G12V(SW480_LARGE_INTESTINE)|G12V(SW620_LARGE_INTESTINE)|G12V(SW900_LUNG)|G12V(YAPC_PANCREAS)	119	Mis		pancreatic, colorectal, lung, thyroid, AML, others				Noonan syndrome;Cardiofaciocutaneous syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			Pancreas(8;6 143 191 305 2070 2426 4376 10944 11745 26467 38091 50869)		Dom	yes		12	12p12.1	3845	v-Ki-ras2 Kirsten rat sarcoma 2 viral oncogene homolog		L, E, M, O	15813	Substitution - Missense(15812)|Deletion - Frameshift(1)						SO:0001583	missense	Familial Cancer Database	Male Turner syndrome, Pterygium Colli syndrome, incl. Noonan-like/Multiple Giant Cell Lesion syndrome; Noonan s. with multiple lentigines/LEOPARD syndrome;CFC, CFCS	ENST00000256078.4	1	1	hg19	CCDS8703.1	.	.	.	.	.	.	.	.	.	.	C	27.2	4.808637	0.90707	.	.	ENSG00000133703	ENST00000311936;ENST00000557334;ENST00000256078;ENST00000556131	T;T;T;T	0.78707	-1.2;-1.2;-1.2;-1.2	5.68	5.68	0.88126	Small GTP-binding protein domain (1);	0.000000	0.85682	D	0.000000	D	0.90373	0.6987	M	0.90650	3.135	0.80722	D	1	D;D	0.76494	0.997;0.999	D;D	0.72625	0.969;0.978	D	0.91773	0.5429	10	0.72032	D	0.01	.	18.3719	0.90409	0.0:1.0:0.0:0.0	.	12;12	P01116-2;P01116	.;RASK_HUMAN	V	12	ENSP00000308495:G12V;ENSP00000452512:G12V;ENSP00000256078:G12V;ENSP00000451856:G12V	ENSP00000256078:G12V	G	-	2	0	KRAS	25289551	1.000000	0.71417	1.000000	0.80357	0.998000	0.95712	7.743000	0.85020	2.668000	0.90789	0.563000	0.77884	GGT		TCGA-2J-AABK-01A-31D-A40W-08	KRAS-004	KNOWN	not_organism_supported|basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000412232.1	1	0	0	15	169	0	60	1	3.380320e-01	2	12	0	60	2	1	9.999999e-01	26	378	0	415	2	1	0.999884	15	167	0	60	2								-7.101348	1	1	0	0		1	0	0	0	2.002578	0	0.200000	1.880000	0.188641	0.800000	0.470000	1.000000	1.000000	0.804655	0.800000	0	0.620000	1.000000
KIF21A	55605	broad.mit.edu	37	12	39752115	39752115	+	Silent	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr12:39752115G>A	ENST00000361418.5	-	8	1095	c.1080C>T	c.(1078-1080)aaC>aaT	p.N360N	KIF21A_ENST00000361961.3_Silent_p.N360N|KIF21A_ENST00000541463.2_Silent_p.N360N|KIF21A_ENST00000544797.2_Silent_p.N360N|KIF21A_ENST00000395670.3_Silent_p.N360N			Q7Z4S6	KI21A_HUMAN	kinesin family member 21A			86		Lung NSC(34;0.179)|all_lung(34;0.213)			ATTTCAGGGTGTTTAACGTTT	0.388000																								0							SO:0001819	synonymous_variant			ENST00000361418.5	0	1	hg19	CCDS53776.1																																																																																				TCGA-2J-AABK-01A-31D-A40W-08	KIF21A-003	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000403581.1	0	0	0	10	726	0	153	0	2.420322e-04	0	2	0	153	2		0	0	0	0	0	2	1	0.996793	10	721	0	151	2								-7.263989	1	1	0	0		1	0	0	0	2.002578	0	0.200000	1.880000	0.188641	0.130000	0.060000	0.240000	0.130000	0.146108	0.130000	0	0.090000	0.190000
TUBA1C	84790	broad.mit.edu	37	12	49666572	49666572	+	Silent	SNP	A	A	G			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08			A	G	A	A		Valid	Somatic	Phase_I	WXS	RNA			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr12:49666572A>G	ENST00000301072.6	+	4	1187	c.912A>G	c.(910-912)aaA>aaG	p.K304K	TUBA1C_ENST00000541364.1_Silent_p.K374K|RP11-161H23.5_ENST00000550468.2_RNA	NM_032704.3	NP_116093.1	Q9BQE3	TBA1C_HUMAN	tubulin, alpha 1c			13					AGATGGTGAAATGTGACCCTC	0.498000																								0							SO:0001819	synonymous_variant			ENST00000301072.6	1	1	hg19	CCDS8782.1																																																																																				TCGA-2J-AABK-01A-31D-A40W-08	TUBA1C-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000404424.1	1	0	0	44	393	0	96	1	1	133	371	0	96	2		0	0	0	0	0	2	1	1.000000	43	359	0	114	2								-20.000000	1	1	0	0		1	0	0	0	2.002578	0	0.200000	1.880000	0.188641	0.980000	0.730000	1.000000	1.000000	0.944191	0.980000	1	0.850000	1.000000
KDM5A	5927	broad.mit.edu	37	12	498206	498206	+	Missense_Mutation	SNP	C	C	G			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr12:498206C>G	ENST00000399788.2	-	1	414	c.52G>C	c.(52-54)Gag>Cag	p.E18Q	KDM5A_ENST00000382815.4_Missense_Mutation_p.E18Q|CCDC77_ENST00000540180.1_5'Flank|CCDC77_ENST00000422000.1_5'Flank	NM_001042603.1	NP_001036068.1	P29375	KDM5A_HUMAN	lysine (K)-specific demethylase 5A			77					ACGGGGCACTCTGGCGGTGGC	0.677000			T	NUP98	AML										Dom	yes		12	12p11	5927	lysine (K)-specific demethylase 5A, JARID1A		L	0							SO:0001583	missense			ENST00000399788.2	1	1	hg19	CCDS41736.1	.	.	.	.	.	.	.	.	.	.	C	20.6	4.014012	0.75161	.	.	ENSG00000073614	ENST00000261253;ENST00000399787;ENST00000399788;ENST00000382815;ENST00000544760;ENST00000535014;ENST00000543507	D;D;D;T;D	0.87334	-2.24;-2.05;-1.67;-1.33;-1.86	5.42	4.53	0.55603	Transcription factor jumonji, JmjN (1);	0.000000	0.85682	D	0.000000	D	0.89588	0.6758	M	0.80847	2.515	0.53688	D	0.999971	B;B;B;B	0.33612	0.084;0.221;0.295;0.419	B;B;B;B	0.41036	0.034;0.244;0.188;0.346	D	0.89846	0.4006	10	0.87932	D	0	-16.9434	14.0654	0.64826	0.0:0.9272:0.0:0.0728	.	18;18;18;18	B4DVX3;F5H1F7;P29375;P29375-2	.;.;KDM5A_HUMAN;.	Q	18	ENSP00000382688:E18Q;ENSP00000372265:E18Q;ENSP00000440622:E18Q;ENSP00000443854:E18Q;ENSP00000444251:E18Q	ENSP00000261253:E18Q	E	-	1	0	KDM5A	368467	1.000000	0.71417	0.862000	0.33874	0.120000	0.20174	7.364000	0.79526	1.288000	0.44600	0.491000	0.48974	GAG		TCGA-2J-AABK-01A-31D-A40W-08	KDM5A-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000397812.1	1	0	0	16	189	0	44	0	3.765799e-02	0	4	0	44	2		0	0	0	0	0	2	1	0.999917	16	179	0	42	2								-19.969460	1	1	0	0		1	0	0	0	1.999859	0	0.200000	1.880000	0.186992	0.770000	0.460000	1.000000	1.000000	0.776760	0.770000	0	0.600000	0.960000
SDR9C7	121214	broad.mit.edu	37	12	57323240	57323240	+	Nonsense_Mutation	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr12:57323240G>A	ENST00000293502.1	-	3	801	c.658C>T	c.(658-660)Cga>Tga	p.R220*		NM_148897.2	NP_683695.1	Q8NEX9	DR9C7_HUMAN	short chain dehydrogenase/reductase family 9C, member 7			7					CAAAGCTTTCGCATGCGTGAC	0.562000																								0							SO:0001587	stop_gained			ENST00000293502.1	0	1	hg19	CCDS8926.1	.	.	.	.	.	.	.	.	.	.	G	33	5.232819	0.95207	.	.	ENSG00000170426	ENST00000293502	.	.	.	5.45	3.51	0.40186	.	0.624103	0.14118	N	0.340258	.	.	.	.	.	.	0.80722	A	1	.	.	.	.	.	.	.	.	.	.	0.17369	T	0.5	.	8.5096	0.33208	0.0:0.2657:0.4449:0.2895	.	.	.	.	X	220	.	ENSP00000293502:R220X	R	-	1	2	SDR9C7	55609507	0.000000	0.05858	0.165000	0.22776	0.353000	0.29299	-0.435000	0.06931	0.706000	0.31912	0.650000	0.86243	CGA		TCGA-2J-AABK-01A-31D-A40W-08	SDR9C7-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000411211.1	1	0	1	49	451	0	73	0	0	0	1	0	73	2		0	0	0	0	0	2	1	1.000000	47	438	0	72	2								-15.441740	1	1	121412	3	35	1	0	0	0	2.002578	0	0.200000	1.880000	0.188641	0.960000	0.720000	1.000000	1.000000	0.933355	0.960000	1	0.830000	1.000000
C12orf66	144577	broad.mit.edu	37	12	64588215	64588215	+	Missense_Mutation	SNP	C	C	T			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr12:64588215C>T	ENST00000398055.3	-	3	798	c.745G>A	c.(745-747)Gtg>Atg	p.V249M	C12orf66_ENST00000311915.8_Missense_Mutation_p.V249M|C12orf66_ENST00000544871.1_Missense_Mutation_p.V196M	NM_152440.4	NP_689653	Q96MD2	CL066_HUMAN	chromosome 12 open reading frame 66			5					GGAGGCTGCACGGCCTTCTGA	0.493000																								0							SO:0001583	missense			ENST00000398055.3	1	1	hg19	CCDS41803.1	.	.	.	.	.	.	.	.	.	.	C	13.47	2.247672	0.39697	.	.	ENSG00000174206	ENST00000311915;ENST00000544871;ENST00000398055	T;T;T	0.40756	1.02;1.02;1.02	5.94	5.05	0.67936	.	0.117224	0.64402	D	0.000011	T	0.48484	0.1502	L	0.41236	1.265	0.53688	D	0.999976	D;D	0.65815	0.99;0.995	P;P	0.55260	0.747;0.772	T	0.40887	-0.9539	9	.	.	.	-14.3474	15.4147	0.74956	0.0:0.9333:0.0:0.0667	.	196;249	F5H2Q3;Q96MD2	.;CL066_HUMAN	M	249;196;249	ENSP00000311486:V249M;ENSP00000445481:V196M;ENSP00000381132:V249M	.	V	-	1	0	C12orf66	62874482	0.998000	0.40836	0.716000	0.30569	0.987000	0.75469	5.846000	0.69444	1.523000	0.49018	0.561000	0.74099	GTG		TCGA-2J-AABK-01A-31D-A40W-08	C12orf66-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000400921.1	1	0	0	28	276	0	57	0	2.445876e-01	1	9	0	57	2		0	0	0	0	0	2	1	1.000000	28	269	0	56	2								-10.392120	1	1	120884	7	38	1	0	0	0	2.002578	0	0.200000	1.880000	0.188641	0.900000	0.620000	1.000000	1.000000	0.887133	0.900000	1	0.750000	1.000000
CD163L1	283316	broad.mit.edu	37	12	7548911	7548911	+	Silent	SNP	G	G	A	rs140225151	byFrequency	TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr12:7548911G>A	ENST00000313599.3	-	8	1887	c.1830C>T	c.(1828-1830)gaC>gaT	p.D610D	CD163L1_ENST00000396630.1_Silent_p.D610D|CD163L1_ENST00000416109.2_Silent_p.D620D			Q9NR16	C163B_HUMAN	CD163 molecule-like 1			96					TGTTCCAGCCGTCATCACACA	0.567000																								0							SO:0001819	synonymous_variant			ENST00000313599.3	1	1	hg19	CCDS8577.1																																																																																				TCGA-2J-AABK-01A-31D-A40W-08	CD163L1-001	KNOWN	basic|appris_candidate|CCDS	protein_coding	protein_coding	OTTHUMT00000399329.1	1	0	0	13	143	0	32		0	0	0	0	32	2		0	0	0	0	0	2	1	0.999534	13	139	0	31	2								-6.597734	1	1	121410	3	38	1	0	0	0	1.999859	0	0.200000	1.880000	0.186992	0.820000	0.460000	1.000000	1.000000	0.814431	0.820000	0	0.620000	1.000000
SOHLH2	54937	broad.mit.edu	37	13	36767849	36767849	+	Silent	SNP	C	C	T			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr13:36767849C>T	ENST00000379881.3	-	4	427	c.339G>A	c.(337-339)ggG>ggA	p.G113G	SOHLH2_ENST00000317764.6_Silent_p.G113G|SOHLH2_ENST00000554962.1_Silent_p.G190G|CCDC169-SOHLH2_ENST00000511166.1_Silent_p.G190G	NM_017826.2	NP_060296.2	Q9NX45	SOLH2_HUMAN	spermatogenesis and oogenesis specific basic helix-loop-helix 2			26		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)		CCATTCCATGCCCTGAAATAC	0.308000																								0							SO:0001819	synonymous_variant			ENST00000379881.3	1	1	hg19	CCDS9355.1																																																																																				TCGA-2J-AABK-01A-31D-A40W-08	SOHLH2-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000044477.2	0	0	0	17	562	0	129		0	0	0	0	129	2		0	0	0	0	0	2	1	0.999965	17	560	0	128	2								-3.244149	1	1	0	0		1	1	2	3	2.041809	0	0.200000	1.880000	0.205561	0.300000	0.180000	1.000000	0.290000	0.348375	0.300000	0	0.230000	0.400000
EIF2B2	8892	broad.mit.edu	37	14	75469848	75469848	+	Missense_Mutation	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr14:75469848G>A	ENST00000266126.5	+	1	235	c.155G>A	c.(154-156)aGc>aAc	p.S52N	RP11-950C14.3_ENST00000554430.1_RNA	NM_014239.3	NP_055054.1	P49770	EI2BB_HUMAN	eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa			11					CACCGCTGGAGCAACGCGGGT	0.672000																								0							SO:0001583	missense			ENST00000266126.5	1	1	hg19	CCDS9836.1	.	.	.	.	.	.	.	.	.	.	G	12.50	1.957275	0.34565	.	.	ENSG00000119718	ENST00000266126	D	0.92545	-3.06	5.73	4.83	0.62350	.	0.163209	0.64402	N	0.000002	T	0.79747	0.4499	N	0.04686	-0.185	0.38742	D	0.953916	B	0.02656	0.0	B	0.10450	0.005	T	0.73538	-0.3951	10	0.06099	T	0.92	-15.1504	11.3171	0.49399	0.1477:0.0:0.8523:0.0	.	52	P49770	EI2BB_HUMAN	N	52	ENSP00000266126:S52N	ENSP00000266126:S52N	S	+	2	0	EIF2B2	74539601	1.000000	0.71417	1.000000	0.80357	0.975000	0.68041	2.131000	0.42074	1.535000	0.49220	0.555000	0.69702	AGC		TCGA-2J-AABK-01A-31D-A40W-08	EIF2B2-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000414993.1	1	0	0	11	168	0	27	1	7.907695e-01	8	39	0	27	2		0	0	0	0	0	2	1	0.998347	10	166	0	27	2								-14.921970	1	1	121374	2	30	1	1	2	3	2.037781	0	0.200000	1.880000	0.204771	0.640000	0.340000	1.000000	1.000000	0.665158	0.640000	0	0.470000	0.870000
VPS13C	54832	broad.mit.edu	37	15	62172889	62172889	+	Silent	SNP	T	T	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr15:62172889T>A	ENST00000261517.5	-	73	9994	c.9921A>T	c.(9919-9921)ctA>ctT	p.L3307L	VPS13C_ENST00000395896.4_Silent_p.L3307L|VPS13C_ENST00000395898.3_Silent_p.L3264L|VPS13C_ENST00000249837.3_Silent_p.L3264L|VPS13C_ENST00000558919.1_5'UTR	NM_020821.2	NP_065872.1			vacuolar protein sorting 13 homolog C (S. cerevisiae)			117					ATTCTGCATTTAGAGCATCAA	0.269000																								0							SO:0001819	synonymous_variant			ENST00000261517.5	1	1	hg19	CCDS32257.1																																																																																				TCGA-2J-AABK-01A-31D-A40W-08	VPS13C-002	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000415997.1	1	0	0	13	127	0	24	1	6.088365e-01	5	16	0	24	2		0	0	0	0	0	2	1	0.999618	13	127	0	24	2								-19.610310	1	1	0	0		1	0	0	0	2.008378	0	0.200000	1.880000	0.191919	0.920000	0.520000	1.000000	1.000000	0.874913	0.920000	1	0.700000	1.000000
CSPG4	1464	broad.mit.edu	37	15	75974724	75974724	+	Silent	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr15:75974724G>A	ENST00000308508.5	-	8	4952	c.4860C>T	c.(4858-4860)taC>taT	p.Y1620Y		NM_001897.4	NP_001888.2	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4			48					GCACCACACGGTAGAGCAGGA	0.667000																								0							SO:0001819	synonymous_variant			ENST00000308508.5	0	1	hg19	CCDS10284.1																																																																																				TCGA-2J-AABK-01A-31D-A40W-08	CSPG4-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000286472.1	0	0	0	5	259	0	46	0	3.383816e-03	0	4	0	46	2		0	0	0	0	0	2	1	0.931603	4	250	0	43	2								-6.249720	1	0	0	0		1	0	0	0	2.008378	0	0.200000	1.880000	0.191919	0.200000	0.070000	0.400000	0.190000	0.219759	0.200000	0	0.120000	0.300000
IQGAP1	8826	broad.mit.edu	37	15	91017344	91017344	+	Missense_Mutation	SNP	C	C	T			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr15:91017344C>T	ENST00000268182.5	+	22	2678	c.2554C>T	c.(2554-2556)Cgg>Tgg	p.R852W	IQGAP1_ENST00000560738.1_Missense_Mutation_p.R280W	NM_003870.3	NP_003861.1	P46940	IQGA1_HUMAN	IQ motif containing GTPase activating protein 1			59	Melanoma(11;0.00551)|Lung NSC(78;0.0237)|all_lung(78;0.0488)		BRCA - Breast invasive adenocarcinoma(143;0.0745)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)		AAACAAAGCTCGGGATGACTA	0.423000																								0							SO:0001583	missense			ENST00000268182.5	1	1	hg19	CCDS10362.1	.	.	.	.	.	.	.	.	.	.	C	21.8	4.195221	0.78902	.	.	ENSG00000140575	ENST00000268182	T	0.03496	3.91	5.49	4.57	0.56435	.	0.063360	0.64402	D	0.000007	T	0.22551	0.0544	M	0.89785	3.06	0.80722	D	1	D	0.89917	1.0	D	0.91635	0.999	T	0.04229	-1.0967	10	0.72032	D	0.01	-10.2579	13.4279	0.61037	0.0:0.9247:0.0:0.0752	.	852	P46940	IQGA1_HUMAN	W	852	ENSP00000268182:R852W	ENSP00000268182:R852W	R	+	1	2	IQGAP1	88818348	1.000000	0.71417	1.000000	0.80357	0.994000	0.84299	3.856000	0.55964	1.453000	0.47775	0.655000	0.94253	CGG		TCGA-2J-AABK-01A-31D-A40W-08	IQGAP1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000313493.1	1	0	1	20	176	0	37	1	9.864188e-01	14	50	0	37	2		0	0	0	0	0	2	1	0.999996	20	174	0	35	2								-3.017830	1	1	0	0		1	0	0	0	2.008378	0	0.200000	1.880000	0.191919	0.990000	0.640000	1.000000	1.000000	0.929861	0.990000	1	0.810000	1.000000
TPSD1	23430	broad.mit.edu	37	16	1306801	1306801	+	Silent	SNP	C	C	T			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr16:1306801C>T	ENST00000211076.3	+	3	406	c.258C>T	c.(256-258)gaC>gaT	p.D86D	RP11-616M22.5_ENST00000566997.1_RNA|TPSD1_ENST00000397534.2_Silent_p.D79D	NM_012217.2	NP_036349.1	Q9BZJ3	TRYD_HUMAN	tryptase delta 1			20		Hepatocellular(780;0.00369)			TGCCCAGGGACATCAAGGATC	0.682000																								0							SO:0001819	synonymous_variant			ENST00000211076.3	0	1	hg19	CCDS10432.1																																																																																				TCGA-2J-AABK-01A-31D-A40W-08	TPSD1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000250320.2	0	0	0	7	153	0	21		0	0	0	0	21	2		0	0	0	0	0	2	1	0.977586	6	146	0	20	2								-4.022665	1	1	121404	1	19	1	1	2	3	2.066066	0	0.200000	1.880000	0.210267	0.490000	0.210000	1.000000	0.430000	0.541415	0.490000	0	0.320000	0.770000
PRSS36	146547	broad.mit.edu	37	16	31161352	31161352	+	Missense_Mutation	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr16:31161352G>A	ENST00000268281.4	-	1	63	c.5C>T	c.(4-6)gCc>gTc	p.A2V	PRSS36_ENST00000418068.2_Missense_Mutation_p.A2V|PRSS36_ENST00000569305.1_Missense_Mutation_p.A2V	NM_001258290.1|NM_173502.4	NP_001245219.1|NP_775773.2	Q5K4E3	POLS2_HUMAN	protease, serine, 36			17					CAGGTGCCGGGCCATGGCGCT	0.652000																								0							SO:0001583	missense			ENST00000268281.4	0	1	hg19	CCDS32436.1	.	.	.	.	.	.	.	.	.	.	G	10.32	1.318445	0.23994	.	.	ENSG00000178226	ENST00000268281;ENST00000418068	D;D	0.89485	-2.52;-2.5	4.97	3.95	0.45737	.	.	.	.	.	T	0.77322	0.4113	N	0.08118	0	0.21355	N	0.999715	B;B;B	0.19817	0.039;0.039;0.039	B;B;B	0.17433	0.011;0.011;0.018	T	0.67181	-0.5735	9	0.51188	T	0.08	.	8.5374	0.33371	0.1204:0.0:0.8796:0.0	.	2;2;2	E7EX56;B7ZMK8;Q5K4E3	.;.;POLS2_HUMAN	V	2	ENSP00000268281:A2V;ENSP00000407160:A2V	ENSP00000268281:A2V	A	-	2	0	PRSS36	31068853	1.000000	0.71417	1.000000	0.80357	0.008000	0.06430	1.152000	0.31663	1.093000	0.41377	0.557000	0.71058	GCC		TCGA-2J-AABK-01A-31D-A40W-08	PRSS36-001	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000433542.1	0	0	0	6	533	1	90		0	0	0	1	90	2		0	0	0	0	0	2	0	0.003709	6	524	1	88	20								-2.577514	1	1	121412	1	31	1	1	2	3	2.030792	0	0.200000	1.880000	0.203980	0.120000	0.040000	1.000000	0.110000	0.162168	0.120000	0	0.070000	0.190000
CDH13	1012	broad.mit.edu	37	16	83704515	83704515	+	Missense_Mutation	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr16:83704515G>A	ENST00000566620.1	+	9	1512	c.1222G>A	c.(1222-1224)Ggg>Agg	p.G408R	CDH13_ENST00000268613.10_Missense_Mutation_p.G455R|CDH13_ENST00000428848.3_Missense_Mutation_p.G369R	NM_001220488.1|NM_001220489.1|NM_001220490.1|NM_001257.4	NP_001207417.1|NP_001207418.1|NP_001207419.1|NP_001248.1	P55290	CAD13_HUMAN	cadherin 13			1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)			CGGAAACCCCGGGCAGAGCTT	0.498000																								0							SO:0001583	missense			ENST00000566620.1	1	1	hg19	CCDS58486.1	.	.	.	.	.	.	.	.	.	.	G	18.80	3.701232	0.68501	.	.	ENSG00000140945	ENST00000268613;ENST00000428848;ENST00000536143;ENST00000538855;ENST00000540531	T	0.53423	0.62	5.75	5.75	0.90469	Cadherin (4);Cadherin-like (1);	.	.	.	.	T	0.54046	0.1834	L	0.29908	0.895	0.80722	D	1	D;P;D	0.76494	0.991;0.676;0.999	P;B;P	0.58970	0.739;0.283;0.849	T	0.44952	-0.9294	9	0.30854	T	0.27	.	18.9266	0.92548	0.0:0.0:1.0:0.0	.	369;455;408	B7Z590;B7Z9B1;P55290	.;.;CAD13_HUMAN	R	455;408;369;110;98	ENSP00000268613:G455R	ENSP00000268613:G455R	G	+	1	0	CDH13	82262016	1.000000	0.71417	0.954000	0.39281	0.452000	0.32318	5.494000	0.66905	2.717000	0.92951	0.585000	0.79938	GGG		TCGA-2J-AABK-01A-31D-A40W-08	CDH13-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000432917.1	1	0	1	57	516	0	97	0	2.884758e-02	0	3	0	97	2		0	0	0	0	0	2	1	1.000000	57	507	0	94	2								-2.329789	0	1	120882	26	48	1	1	2	3	2.030792	0	0.200000	1.880000	0.203980	0.990000	0.770000	1.000000	1.000000	0.955253	0.990000	1	0.880000	1.000000
MYH4	4622	broad.mit.edu	37	17	10366281	10366281	+	Missense_Mutation	SNP	C	C	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr17:10366281C>A	ENST00000255381.2	-	11	1019	c.909G>T	c.(907-909)atG>atT	p.M303I	RP11-799N11.1_ENST00000399342.2_RNA|RP11-799N11.1_ENST00000581304.1_RNA|CTC-297N7.11_ENST00000587182.2_RNA	NM_017533.2	NP_060003.2	Q9Y623	MYH4_HUMAN	myosin, heavy chain 4, skeletal muscle			149					TGATCAGAAGCATTTCTGAAC	0.433000																								0							SO:0001583	missense			ENST00000255381.2	1	1	hg19	CCDS11154.1	.	.	.	.	.	.	.	.	.	.	C	17.21	3.332814	0.60853	.	.	ENSG00000141048	ENST00000255381	D	0.87103	-2.21	5.38	5.38	0.77491	Myosin head, motor domain (2);	0.000000	0.45361	U	0.000374	D	0.89361	0.6693	M	0.84683	2.71	0.53688	D	0.999972	B	0.02656	0.0	B	0.09377	0.004	D	0.86226	0.1634	10	0.52906	T	0.07	.	19.4872	0.95033	0.0:1.0:0.0:0.0	.	303	Q9Y623	MYH4_HUMAN	I	303	ENSP00000255381:M303I	ENSP00000255381:M303I	M	-	3	0	MYH4	10307006	1.000000	0.71417	1.000000	0.80357	0.993000	0.82548	3.183000	0.50918	2.671000	0.90904	0.655000	0.94253	ATG		TCGA-2J-AABK-01A-31D-A40W-08	MYH4-001	KNOWN	NAGNAG_splice_site|basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000252731.1	0	0	0	15	242	0	54		0	0	0	0	54	2		0	0	0	0	0	2	1	0.999878	14	241	0	52	2								-5.491055	1	1	0	0		1	0	1	1	1.862315	1	0.200000	1.880000	0.120879	0.530000	0.310000	0.800000	0.520000	0.546105	0.530000	0	0.410000	0.670000
TP53	7157	broad.mit.edu	37	17	7577123	7577123	+	Missense_Mutation	SNP	A	A	G			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08			A	G	A	A		Valid	Somatic	Phase_I	WXS	targeted			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr17:7577123A>G	ENST00000269305.4	-	8	1004	c.815T>C	c.(814-816)gTg>gCg	p.V272A	TP53_ENST00000445888.2_Missense_Mutation_p.V272A|TP53_ENST00000574684.1_5'Flank|TP53_ENST00000455263.2_Missense_Mutation_p.V272A|TP53_ENST00000420246.2_Missense_Mutation_p.V272A|TP53_ENST00000359597.4_Missense_Mutation_p.V272A|TP53_ENST00000413465.2_Intron	NM_000546.5|NM_001126112.2|NM_001126118.1|NM_001276760.1|NM_001276761.1	NP_000537.3|NP_001119584.1|NP_001119590.1|NP_001263689.1|NP_001263690.1	P04637	P53_HUMAN	tumor protein p53	p.0?(8)|p.V272E(8)|p.V272A(7)|p.V272G(6)|p.?(2)|p.F270fs*72(1)|p.L265_K305del41(1)|p.S269fs*21(1)|p.E258fs*71(1)|p.E271fs*73(1)|p.F270_D281del12(1)|p.E271_R273delEVR(1)|p.V272_K292del21(1)		24185		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		Acetylsalicylic acid(DB00945)	ACAAACACGCACCTCAAAGCT	0.532000		111	Mis, N, F		breast, colorectal, lung, sarcoma, adrenocortical, glioma, multiple other tumour types	breast, sarcoma, adrenocortical carcinoma, glioma, multiple other tumour types		Other conserved DNA damage response genes	Osteosarcoma, Familial Clustering of;Li-Fraumeni syndrome;Hereditary Breast-Ovarian Cancer, non-BRCA1/2;Hereditary Adrenocortical Cancer;Endometrial Cancer, Familial Clustering of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			Pancreas(47;798 1329 9957 10801)	yes	Rec	yes	Li-Fraumeni syndrome	17	17p13	7157	tumor protein p53		L, E, M, O	39	Substitution - Missense(21)|Whole gene deletion(8)|Deletion - In frame(4)|Deletion - Frameshift(4)|Unknown(2)	GRCh37	CM942122	TP53	M		SO:0001583	missense	Familial Cancer Database	Familial Osteogenic Sarcoma;LFS, SBLA syndrome (Sarcoma Breast Leukemia Adrenal cancer), incl.: Cancer with In Vitro Radioresistence, Familial, Li-Fraumeni-like s.;BRCAX;Familial Adrenocortical Carcinoma;	ENST00000269305.4	0	1	hg19	CCDS11118.1	.	.	.	.	.	.	.	.	.	.	A	15.32	2.797806	0.50208	.	.	ENSG00000141510	ENST00000359597;ENST00000269305;ENST00000455263;ENST00000420246;ENST00000445888;ENST00000396473;ENST00000509690	D;D;D;D;D;D	0.99822	-6.94;-6.94;-6.94;-6.94;-6.94;-6.94	5.13	2.87	0.33458	p53, DNA-binding domain (1);p53-like transcription factor, DNA-binding (1);p53/RUNT-type transcription factor, DNA-binding domain (1);	0.057604	0.64402	D	0.000002	D	0.99622	0.9862	M	0.75447	2.3	0.80722	D	1	D;D;D;D	0.89917	0.999;1.0;1.0;0.992	D;D;D;D	0.83275	0.996;0.996;0.996;0.99	D	0.99204	1.0874	10	0.28530	T	0.3	-27.8222	6.511	0.22222	0.7602:0.1564:0.0833:0.0	.	272;272;272;272	P04637-2;P04637-3;P04637;Q1MSW8	.;.;P53_HUMAN;.	A	272;272;272;272;272;261;140	ENSP00000352610:V272A;ENSP00000269305:V272A;ENSP00000398846:V272A;ENSP00000391127:V272A;ENSP00000391478:V272A;ENSP00000425104:V140A	ENSP00000269305:V272A	V	-	2	0	TP53	7517848	0.032000	0.19561	0.353000	0.25747	0.798000	0.45092	0.523000	0.22925	0.396000	0.25283	0.379000	0.24179	GTG		TCGA-2J-AABK-01A-31D-A40W-08	TP53-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000367397.1	1	0	0	15	103	0	14	1	9.976036e-01	21	51	0	14	2	1	1	84	820	0	1108	2	1	0.999896	15	101	0	14	2								-19.999920	1	1	0	0		1	0	1	1	1.862315	1	0.200000	1.880000	0.120879	0.940000	0.610000	1.000000	1.000000	0.904703	0.940000	1	0.780000	1.000000
RNF213	57674	broad.mit.edu	37	17	78337556	78337556	+	Missense_Mutation	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08			G	A	G	G		Valid	Somatic	Phase_I	WXS	targeted			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr17:78337556G>A	ENST00000582970.1	+	41	11859	c.11716G>A	c.(11716-11718)Ggg>Agg	p.G3906R	CTD-2047H16.4_ENST00000575034.1_RNA|RNF213_ENST00000508628.2_Missense_Mutation_p.G3955R|RNF213_ENST00000336301.6_Missense_Mutation_p.G1979R|CTD-2047H16.4_ENST00000572151.1_RNA	NM_001256071.1	NP_001243000.1	Q63HN8	RN213_HUMAN	ring finger protein 213			130	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)		GCAAGGCAGCGGGAGCCTGGC	0.617000																								0							SO:0001583	missense			ENST00000582970.1	0	1	hg19	CCDS58606.1	.	.	.	.	.	.	.	.	.	.	G	16.25	3.070011	0.55539	.	.	ENSG00000173821	ENST00000508628;ENST00000411702;ENST00000336301	T	0.23348	1.91	5.03	-0.504	0.11997	.	0.293863	0.37483	N	0.002079	T	0.45054	0.1323	M	0.77820	2.39	0.09310	N	1	P;D	0.89917	0.76;1.0	B;D	0.72625	0.147;0.978	T	0.32798	-0.9893	10	0.87932	D	0	.	9.053	0.36387	0.4393:0.0:0.5607:0.0	.	3955;1979	C9JCP4;Q63HN8	.;RN213_HUMAN	R	3906;3955;1979	ENSP00000338218:G1979R	ENSP00000338218:G1979R	G	+	1	0	RNF213	75952151	0.932000	0.31603	0.000000	0.03702	0.001000	0.01503	1.647000	0.37260	-0.314000	0.08716	-0.150000	0.13652	GGG		TCGA-2J-AABK-01A-31D-A40W-08	RNF213-020	KNOWN	basic|appris_candidate|CCDS	protein_coding	protein_coding	OTTHUMT00000443298.1	1	0	0	9	101	0	19	1	7.401726e-01	4	27	0	19	2	1	9.999423e-01	60	409	1	493	6	1	0.994859	9	101	0	18	2								-2.921914	1	1	0	0		1	0	1	1	1.867580	1	0.200000	1.880000	0.124726	0.720000	0.370000	1.000000	1.000000	0.727711	0.720000	0	0.520000	0.930000
FAM129C	199786	broad.mit.edu	37	19	17653012	17653012	+	Missense_Mutation	SNP	G	G	A	rs149574830		TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr19:17653012G>A	ENST00000335393.4	+	11	1469	c.1331G>A	c.(1330-1332)cGg>cAg	p.R444Q	FAM129C_ENST00000595684.1_Missense_Mutation_p.R444Q|FAM129C_ENST00000332386.5_Missense_Mutation_p.R444Q|FAM129C_ENST00000599164.1_Missense_Mutation_p.R413Q|FAM129C_ENST00000601861.1_Missense_Mutation_p.R413Q|FAM129C_ENST00000600871.1_Missense_Mutation_p.R390Q|FAM129C_ENST00000352727.3_Missense_Mutation_p.R444Q|FAM129C_ENST00000300971.2_Missense_Mutation_p.R444Q|FAM129C_ENST00000599124.1_Missense_Mutation_p.R413Q|FAM129C_ENST00000449408.2_Missense_Mutation_p.R170Q	NM_173544.4	NP_775815	Q86XR2	NIBL2_HUMAN	family with sequence similarity 129, member C			33					GAGGCCGAGCGGAGCCGGGGG	0.607000																								0							SO:0001583	missense			ENST00000335393.4	1	1	hg19	CCDS12362.1	.	.	.	.	.	.	.	.	.	.	g	5.022	0.189829	0.09547	2.27E-4	2.33E-4	ENSG00000167483	ENST00000335393;ENST00000332386;ENST00000352727;ENST00000300971;ENST00000449408;ENST00000435646	T;T;T;T;T	0.22945	2.27;2.29;1.98;1.99;1.93	4.77	1.28	0.21552	.	0.297213	0.23053	N	0.052468	T	0.10637	0.0260	L	0.28400	0.85	0.09310	N	1	P;P;P;P;B;P	0.39624	0.535;0.681;0.681;0.681;0.366;0.681	B;B;B;B;B;B	0.31016	0.049;0.123;0.071;0.071;0.05;0.071	T	0.16837	-1.0389	10	0.13108	T	0.6	-22.8782	3.1616	0.06522	0.2352:0.0:0.4981:0.2667	.	390;444;444;444;170;444	E7ENP6;Q86XR2;Q86XR2-3;Q86XR2-4;B4DNU3;Q86XR2-2	.;NIBL2_HUMAN;.;.;.;.	Q	444;444;444;444;170;390	ENSP00000335040:R444Q;ENSP00000333447:R444Q;ENSP00000341067:R444Q;ENSP00000300971:R444Q;ENSP00000394929:R170Q	ENSP00000300971:R444Q	R	+	2	0	FAM129C	17514012	0.000000	0.05858	0.000000	0.03702	0.007000	0.05969	0.160000	0.16462	0.455000	0.26910	0.586000	0.80456	CGG		TCGA-2J-AABK-01A-31D-A40W-08	FAM129C-001	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000464206.1	1	0	0	38	794	0	189		0	0	0	0	189	2		0	0	0	0	0	2	1	1.000000	38	784	0	184	2								-3.191299	1	1	121412	4	47	1	1	2	3	2.034460	0	0.200000	1.880000	0.204771	0.460000	0.330000	1.000000	0.460000	0.493211	0.460000	0	0.390000	0.560000
PNMAL2	57469	broad.mit.edu	37	19	46998384	46998384	+	Silent	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr19:46998384G>A	ENST00000377655.2	-	1	338	c.339C>T	c.(337-339)gaC>gaT	p.D113D	PNMAL2_ENST00000594749.1_Intron|PNMAL2_ENST00000599531.1_Silent_p.D113D|AC011484.1_ENST00000377652.3_Silent_p.P165P			Q9ULN7	PNML2_HUMAN	paraneoplastic Ma antigen family-like 2			8		Ovarian(192;0.00965)|all_neural(266;0.0459)			GCGTGGGCCCGTCATCCAGCA	0.692000																								0							SO:0001819	synonymous_variant			ENST00000377655.2	1	1	hg19																																																																																					TCGA-2J-AABK-01A-31D-A40W-08	PNMAL2-201	KNOWN	basic	protein_coding	protein_coding		1	0	0	59	550	0	114	0	9.787876e-03	0	2	0	114	2		0	0	0	0	0	2	1	1.000000	55	539	0	111	2								-17.054310	1	1	0	0		1	1	2	3	2.034460	0	0.200000	1.880000	0.204771	0.970000	0.750000	1.000000	1.000000	0.944724	0.970000	1	0.860000	1.000000
CCDC114	93233	broad.mit.edu	37	19	48800579	48800579	+	Missense_Mutation	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr19:48800579G>A	ENST00000315396.7	-	14	2349	c.1667C>T	c.(1666-1668)tCt>tTt	p.S556F		NM_144577.3	NP_653178.3	Q96M63	CC114_HUMAN	coiled-coil domain containing 114			24		all_epithelial(76;9.64e-05)|all_lung(116;0.000147)|Lung NSC(112;0.000251)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)			GTGGCCAAGAGAGCCACGGTC	0.642000																								0							SO:0001583	missense			ENST00000315396.7	0	1	hg19	CCDS12714.2	.	.	.	.	.	.	.	.	.	.	G	14.35	2.509077	0.44660	.	.	ENSG00000105479	ENST00000315396	T	0.32272	1.46	3.66	2.61	0.31194	.	.	.	.	.	T	0.24236	0.0587	L	0.32530	0.975	0.09310	N	1	P	0.41784	0.762	B	0.41135	0.348	T	0.09707	-1.0662	9	0.66056	D	0.02	-8.5304	7.6387	0.28282	0.127:0.0:0.873:0.0	.	556	Q96M63	CC114_HUMAN	F	556	ENSP00000318429:S556F	ENSP00000318429:S556F	S	-	2	0	CCDC114	53492391	0.320000	0.24616	0.023000	0.16930	0.007000	0.05969	3.696000	0.54757	0.820000	0.34516	0.555000	0.69702	TCT		TCGA-2J-AABK-01A-31D-A40W-08	CCDC114-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000343207.1	0	0	0	18	219	1	47	0	6.624826e-03	0	2	1	47	2		0	0	0	0	0	2	1	0.627231	17	219	1	46	17								-19.999540	1	1	0	0		1	1	2	3	2.034460	0	0.200000	1.880000	0.204771	0.780000	0.480000	1.000000	1.000000	0.785802	0.780000	0	0.610000	0.990000
NLRP13	126204	broad.mit.edu	37	19	56424320	56424320	+	Missense_Mutation	SNP	T	T	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr19:56424320T>A	ENST00000342929.3	-	5	862	c.863A>T	c.(862-864)gAt>gTt	p.D288V	NLRP13_ENST00000588751.1_Missense_Mutation_p.D288V	NM_176810.2	NP_789780.2	Q86W25	NAL13_HUMAN	NLR family, pyrin domain containing 13			109		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)			ATCGGGCCAATCCAAAGAAAT	0.393000																								0							SO:0001583	missense			ENST00000342929.3	1	1	hg19	CCDS33119.1	.	.	.	.	.	.	.	.	.	.	T	12.15	1.852815	0.32699	.	.	ENSG00000173572	ENST00000342929	D	0.83506	-1.73	2.7	1.66	0.24008	NACHT nucleoside triphosphatase (1);	.	.	.	.	D	0.85995	0.5827	M	0.67397	2.05	0.09310	N	0.999993	D	0.65815	0.995	D	0.63381	0.914	T	0.73591	-0.3934	9	0.66056	D	0.02	.	3.7405	0.08528	0.0:0.1879:0.0:0.8121	.	288	Q86W25	NAL13_HUMAN	V	288	ENSP00000343891:D288V	ENSP00000343891:D288V	D	-	2	0	NLRP13	61116132	0.039000	0.19947	0.129000	0.21949	0.006000	0.05464	0.488000	0.22371	1.211000	0.43351	0.482000	0.46254	GAT		TCGA-2J-AABK-01A-31D-A40W-08	NLRP13-001	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000396560.1	1	0	0	31	322	0	68		0	0	0	0	68	2		0	0	0	0	0	2	1	1.000000	31	318	0	65	2								-10.539440	1	1	0	0		1	1	2	3	2.065882	0	0.200000	1.880000	0.210267	0.910000	0.620000	1.000000	1.000000	0.890494	0.910000	1	0.750000	1.000000
ZSCAN5B	342933	broad.mit.edu	37	19	56702324	56702324	+	Silent	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr19:56702324G>A	ENST00000586855.2	-	4	934	c.621C>T	c.(619-621)gaC>gaT	p.D207D	ZSCAN5B_ENST00000358992.3_Silent_p.D207D			A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B			37					CACCTGTTACGTCAATACTCT	0.507000																								0							SO:0001819	synonymous_variant			ENST00000586855.2	1	1	hg19	CCDS46203.1																																																																																				TCGA-2J-AABK-01A-31D-A40W-08	ZSCAN5B-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000457834.2	0	0	0	36	453	1	131	0	0	0	1	1	131	2		0	0	0	0	0	2	1	0.999618	36	450	1	129	14								-9.229429	1	1	121412	6	42	1	1	2	3	2.065882	0	0.200000	1.880000	0.210267	0.760000	0.530000	1.000000	0.740000	0.781359	0.760000	0	0.640000	0.950000
GSTM5	2949	broad.mit.edu	37	1	110254908	110254908	+	Translation_Start_Site	SNP	T	T	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr1:110254908T>A	ENST00000256593.3	+	0	32				GSTM5_ENST00000369812.5_De_novo_Start_OutOfFrame|GSTM5_ENST00000369813.1_De_novo_Start_OutOfFrame	NM_000851.3	NP_000842.2	P46439	GSTM5_HUMAN	glutathione S-transferase mu 5			21		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Glutathione(DB00143)	CTGATGCCTGTCTGCAGAATC	0.682000																								0											ENST00000256593.3	0	1	hg19	CCDS811.1																																																																																				TCGA-2J-AABK-01A-31D-A40W-08	GSTM5-001	KNOWN	basic|CCDS	protein_coding	protein_coding	OTTHUMT00000032200.1	0	0	0	74	637	0	133	0	1.113412e-02	0	2	0	133	2		0	0	0	0	0	2	1	1.000000	71	626	0	130	2								-20.000000	1	1	0	0		1	0	1	1	1.860983	1	0.200000	1.880000	0.125683	0.930000	0.750000	1.000000	1.000000	0.928076	0.930000	1	0.840000	1.000000
MLLT11	10962	broad.mit.edu	37	1	151039879	151039879	+	Missense_Mutation	SNP	A	A	G			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr1:151039879A>G	ENST00000368921.3	+	2	2981	c.179A>G	c.(178-180)aAc>aGc	p.N60S	CDC42SE1_ENST00000439374.2_Intron	NM_006818.3	NP_006809.1	Q13015	AF1Q_HUMAN	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11			1	Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)		CAGGAGAAAAACCCTGAAGGT	0.532000																								0							SO:0001583	missense			ENST00000368921.3	1	1	hg19	CCDS982.1	.	.	.	.	.	.	.	.	.	.	A	9.105	1.005000	0.19199	.	.	ENSG00000213190	ENST00000368921	.	.	.	6.06	-12.1	0.00011	.	1.158550	0.06646	N	0.761875	T	0.03263	0.0095	.	.	.	0.09310	N	1	B	0.06786	0.001	B	0.04013	0.001	T	0.15350	-1.0440	8	0.10111	T	0.7	-3.2682	6.6906	0.23169	0.1975:0.4743:0.25:0.0781	.	60	Q13015	AF1Q_HUMAN	S	60	.	ENSP00000357917:N60S	N	+	2	0	MLLT11	149306503	0.000000	0.05858	0.065000	0.19835	0.750000	0.42670	-0.453000	0.06778	-2.338000	0.00627	-0.250000	0.11733	AAC		TCGA-2J-AABK-01A-31D-A40W-08	MLLT11-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000085103.1	0	0	0	21	526	0	68	0	2.937825e-01	0	27	0	68	2		0	0	0	0	0	2	1	0.999997	21	522	0	66	2								-3.498016	1	1	0	0		1	2	2	4	2.331064	1	0.200000	1.880000	0.306759	0.470000	0.280000	1.000000	0.430000	0.551637	0.470000	0	0.370000	1.000000
CRNN	49860	broad.mit.edu	37	1	152382385	152382385	+	Missense_Mutation	SNP	G	G	T			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr1:152382385G>T	ENST00000271835.3	-	3	1235	c.1173C>A	c.(1171-1173)agC>agA	p.S391R	RP1-91G5.3_ENST00000411804.1_RNA	NM_016190.2	NP_057274.1	Q9UBG3	CRNN_HUMAN	cornulin			35	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)		CCTCAGGGTTGCTCACTTGCA	0.602000																								0							SO:0001583	missense			ENST00000271835.3	1	1	hg19	CCDS1010.1	.	.	.	.	.	.	.	.	.	.	G	11.93	1.785870	0.31593	.	.	ENSG00000143536	ENST00000271835	T	0.04970	3.52	4.5	1.36	0.22044	.	0.199037	0.36066	N	0.002802	T	0.04588	0.0125	L	0.50333	1.59	0.09310	N	1	D	0.71674	0.998	P	0.58721	0.844	T	0.26430	-1.0103	10	0.72032	D	0.01	.	2.4183	0.04441	0.1093:0.2065:0.4987:0.1855	.	391	Q9UBG3	CRNN_HUMAN	R	391	ENSP00000271835:S391R	ENSP00000271835:S391R	S	-	3	2	CRNN	150649009	0.069000	0.21087	0.062000	0.19696	0.038000	0.13279	0.607000	0.24209	0.495000	0.27882	0.585000	0.79938	AGC		TCGA-2J-AABK-01A-31D-A40W-08	CRNN-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000034503.1	1	0	0	42	514	0	64		0	0	0	0	64	2		0	0	0	0	0	2	1	1.000000	41	503	0	64	2								-10.330540	1	1	0	0		1	2	2	4	2.331064	1	0.200000	1.880000	0.306759	0.900000	0.650000	1.000000	1.000000	0.892555	0.900000	1	0.760000	1.000000
HMCN1	83872	broad.mit.edu	37	1	186147896	186147896	+	Missense_Mutation	SNP	T	T	C			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr1:186147896T>C	ENST00000271588.4	+	104	16521	c.16292T>C	c.(16291-16293)gTa>gCa	p.V5431A	HMCN1_ENST00000367492.2_Intron|GS1-174L6.4_ENST00000428391.1_RNA	NM_031935.2	NP_114141.2	Q96RW7	HMCN1_HUMAN	hemicentin 1			308					GACACATGTGTAGGTAAATGT	0.428000																								0							SO:0001583	missense			ENST00000271588.4	0	1	hg19	CCDS30956.1	.	.	.	.	.	.	.	.	.	.	T	13.38	2.221260	0.39201	.	.	ENSG00000143341	ENST00000271588	D	0.87966	-2.32	5.56	5.56	0.83823	Growth factor, receptor (1);	0.187626	0.47455	D	0.000237	D	0.83101	0.5181	L	0.48174	1.505	0.80722	D	1	B	0.31625	0.332	B	0.27380	0.079	T	0.82808	-0.0274	10	0.56958	D	0.05	.	14.5915	0.68368	0.0:0.0:0.0:1.0	.	5431	Q96RW7	HMCN1_HUMAN	A	5431	ENSP00000271588:V5431A	ENSP00000271588:V5431A	V	+	2	0	HMCN1	184414519	1.000000	0.71417	1.000000	0.80357	0.983000	0.72400	6.614000	0.74197	2.240000	0.73641	0.533000	0.62120	GTA		TCGA-2J-AABK-01A-31D-A40W-08	HMCN1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000131848.1	0	0	0	16	345	1	40	0	2.084493e-02	0	5	1	40	2		0	0	0	0	0	2	0	0.050196	15	340	1	37	27								-17.090710	1	1	0	0		1	2	2	4	2.362231	1	0.200000	1.880000	0.316239	0.550000	0.310000	1.000000	0.520000	0.598668	0.550000	0	0.420000	0.780000
CACNA1S	779	broad.mit.edu	37	1	201079379	201079379	+	Missense_Mutation	SNP	G	G	C			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr1:201079379G>C	ENST00000362061.3	-	2	397	c.171C>G	c.(169-171)atC>atG	p.I57M	CACNA1S_ENST00000367338.3_Missense_Mutation_p.I57M	NM_000069.2	NP_000060.2	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type, alpha 1S subunit			102				Amlodipine(DB00381)|Cinnarizine(DB00568)|Clevidipine(DB04920)|Dronedarone(DB04855)|Felodipine(DB01023)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)|Nilvadipine(DB06712)|Nimodipine(DB00393)|Nisoldipine(DB00401)|Nitrendipine(DB01054)|Spironolactone(DB00421)|Verapamil(DB00661)	TGGTGAGCAAGATGATCGTCT	0.577000																								0							SO:0001583	missense			ENST00000362061.3	1	1	hg19	CCDS1407.1	.	.	.	.	.	.	.	.	.	.	G	18.39	3.614339	0.66672	.	.	ENSG00000081248	ENST00000362061;ENST00000367338	T;T	0.71698	-0.59;-0.59	4.86	4.86	0.63082	.	0.000000	0.85682	D	0.000000	D	0.86306	0.5901	M	0.92555	3.32	0.47862	D	0.999533	D	0.89917	1.0	D	0.91635	0.999	D	0.88364	0.2990	10	0.59425	D	0.04	.	11.4934	0.50394	0.0841:0.0:0.9159:0.0	.	57	Q13698	CAC1S_HUMAN	M	57	ENSP00000355192:I57M;ENSP00000356307:I57M	ENSP00000355192:I57M	I	-	3	3	CACNA1S	199346002	1.000000	0.71417	1.000000	0.80357	0.983000	0.72400	4.482000	0.60257	2.388000	0.81334	0.561000	0.74099	ATC		TCGA-2J-AABK-01A-31D-A40W-08	CACNA1S-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000087049.1	1	0	1	38	292	0	40	1	1.411050e-02	2	0	0	40	2		0	0	0	0	0	2	1	1.000000	38	290	0	39	2								-20.000000	1	1	0	0		1	2	2	4	2.199606	1	0.200000	1.880000	0.266055	0.990000	0.930000	1.000000	1.000000	0.996158	0.990000	1	0.990000	1.000000
EPHB2	2048	broad.mit.edu	37	1	23111370	23111370	+	Silent	SNP	C	C	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr1:23111370C>A	ENST00000400191.3	+	3	630	c.612C>A	c.(610-612)ggC>ggA	p.G204G	EPHB2_ENST00000374630.3_Silent_p.G204G|EPHB2_ENST00000374632.3_Silent_p.G204G|EPHB2_ENST00000544305.1_Silent_p.G204G|EPHB2_ENST00000374627.1_Silent_p.G198G	NM_004442.6|NM_017449.3	NP_004433.2|NP_059145.2	P29323	EPHB2_HUMAN	EPH receptor B2			56		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)			TCCAGAATGGCGCCATCTTCC	0.627000																								0							SO:0001819	synonymous_variant			ENST00000400191.3	1	1	hg19																																																																																					TCGA-2J-AABK-01A-31D-A40W-08	EPHB2-001	KNOWN	basic	protein_coding	protein_coding	OTTHUMT00000008060.2	1	0	1	27	149	0	39	1	7.295226e-01	3	13	0	39	2		0	0	0	0	0	2	1	1.000000	26	146	0	39	2								-20.000000	1	1	0	0		1	0	2	2	1.957755	1	0.200000	1.880000	0.200000	0.990000	0.990000	1.000000	1.000000	0.999237	0.990000	1	0.990000	1.000000
RYR2	6262	broad.mit.edu	37	1	237948081	237948081	+	Missense_Mutation	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr1:237948081G>A	ENST00000366574.2	+	90	13386	c.13069G>A	c.(13069-13071)Gcc>Acc	p.A4357T	RYR2_ENST00000609119.1_3'UTR|RYR2_ENST00000542537.1_Missense_Mutation_p.A4341T|RYR2_ENST00000360064.6_Missense_Mutation_p.A4363T	NM_001035.2	NP_001026.2	Q92736	RYR2_HUMAN	ryanodine receptor 2 (cardiac)	p.A4355T(1)		586	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)		CCTGGAAGCCGCCCTGCCCTC	0.532000																								1	Substitution - Missense(1)						SO:0001583	missense			ENST00000366574.2	1	1	hg19	CCDS55691.1	.	.	.	.	.	.	.	.	.	.	G	6.908	0.537143	0.13188	.	.	ENSG00000198626	ENST00000366574;ENST00000360064;ENST00000542537;ENST00000542288	D;D;D	0.93659	-3.26;-3.26;-3.26	5.32	1.05	0.20165	Ryanodine Receptor TM 4-6 (1);	0.568755	0.15572	N	0.255407	T	0.80613	0.4656	N	0.08118	0	0.36787	D	0.884646	B;B	0.32071	0.102;0.355	B;B	0.26614	0.028;0.071	T	0.71310	-0.4631	10	0.14252	T	0.57	-1.744	7.2896	0.26358	0.1498:0.2567:0.5934:0.0	.	1331;4357	B4DGV4;Q92736	.;RYR2_HUMAN	T	4357;4363;4341;1331	ENSP00000355533:A4357T;ENSP00000353174:A4363T;ENSP00000443798:A4341T	ENSP00000353174:A4363T	A	+	1	0	RYR2	236014704	0.000000	0.05858	0.096000	0.21009	0.123000	0.20343	0.422000	0.21296	0.032000	0.15435	-0.143000	0.13931	GCC		TCGA-2J-AABK-01A-31D-A40W-08	RYR2-001	KNOWN	non_canonical_conserved|basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000095402.2	1	0	1	50	204	0	37	1	4.030885e-02	2	0	0	37	2		0	0	0	0	0	2	1	1.000000	49	198	0	37	2								-3.501750	1	1	120864	27	42	1	0	1	1	2.005712	1	0.200000	1.880000	0.121844	0.990000	0.950000	1.000000	1.000000	0.997632	0.990000	1	0.990000	1.000000
ZC3H12A	80149	broad.mit.edu	37	1	37948837	37948837	+	Silent	SNP	A	A	T			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08			A	T	A	A		Valid	Somatic	Phase_I	WXS	RNA			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr1:37948837A>T	ENST00000373087.6	+	6	1541	c.1425A>T	c.(1423-1425)ggA>ggT	p.G475G		NM_025079.2	NP_079355.2			zinc finger CCCH-type containing 12A			21		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)			GTCCCTATGGATCTGAGCTCC	0.677000																								0							SO:0001819	synonymous_variant			ENST00000373087.6	1	1	hg19	CCDS417.1																																																																																				TCGA-2J-AABK-01A-31D-A40W-08	ZC3H12A-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000012154.2	1	0	1	52	333	0	61	1	9.999934e-01	45	69	0	61	2		0	0	0	0	0	2	1	1.000000	51	325	0	60	2								-20.000000	1	1	0	0		1	0	2	2	1.962099	1	0.200000	1.880000	0.200000	0.990000	0.990000	1.000000	1.000000	0.999458	0.990000	1	0.990000	1.000000
TIAM1	7074	broad.mit.edu	37	21	32499427	32499427	+	Silent	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr21:32499427G>A	ENST00000286827.3	-	27	4560	c.4089C>T	c.(4087-4089)tcC>tcT	p.S1363S	TIAM1_ENST00000541036.1_Silent_p.S1303S	NM_003253.2	NP_003244.2	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1			115					CTTCAGACTCGGATTTTACAT	0.453000																								0							SO:0001819	synonymous_variant			ENST00000286827.3	1	1	hg19	CCDS13609.1	.	.	.	.	.	.	.	.	.	.	G	1.678	-0.507137	0.04231	.	.	ENSG00000156299	ENST00000423206	.	.	.	6.17	-12.3	0.00002	.	.	.	.	.	T	0.30262	0.0759	.	.	.	0.80722	D	1	.	.	.	.	.	.	T	0.46652	-0.9176	4	.	.	.	.	1.7358	0.02941	0.3065:0.0798:0.2498:0.3639	.	.	.	.	L	18	.	.	P	-	2	0	TIAM1	31421298	0.000000	0.05858	0.009000	0.14445	0.276000	0.26787	-4.277000	0.00261	-3.566000	0.00140	-1.869000	0.00555	CCG		TCGA-2J-AABK-01A-31D-A40W-08	TIAM1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000192552.1	1	0	0	27	260	0	52	0	6.081076e-01	0	21	0	52	2		0	0	0	0	0	2	1	1.000000	27	255	0	52	2								-2.966611	1	1	121412	9	42	1	0	1	1	1.867336	1	0.200000	1.880000	0.137001	0.860000	0.580000	1.000000	1.000000	0.855636	0.860000	1	0.710000	1.000000
DSCR4	10281	broad.mit.edu	37	21	39493319	39493319	+	Missense_Mutation	SNP	C	C	T			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr21:39493319C>T	ENST00000328264.3	-	1	135	c.31G>A	c.(31-33)Gaa>Aaa	p.E11K	DSCR4_ENST00000398948.1_Missense_Mutation_p.E11K|DSCR8_ENST00000400477.3_5'Flank|DSCR8_ENST00000357704.4_5'Flank	NM_005867.2	NP_005858.1	P56555	DSCR4_HUMAN	Down syndrome critical region gene 4			6					atccggggttcatcatctctc	0.498000																								0							SO:0001583	missense			ENST00000328264.3	1	1	hg19	CCDS33554.1	.	.	.	.	.	.	.	.	.	.	C	9.190	1.025771	0.19512	0.0	1.16E-4	ENSG00000184029	ENST00000398948;ENST00000328264	.	.	.	0.235	0.235	0.15431	.	.	.	.	.	T	0.50786	0.1636	.	.	.	0.09310	N	1	P	0.49696	0.927	P	0.56563	0.801	T	0.40021	-0.9585	6	0.87932	D	0	.	.	.	.	.	11	P56555	DSCR4_HUMAN	K	11	.	ENSP00000328676:E11K	E	-	1	0	DSCR4	38415189	0.016000	0.18221	0.053000	0.19242	0.053000	0.15095	0.305000	0.19254	0.308000	0.22923	0.313000	0.20887	GAA		TCGA-2J-AABK-01A-31D-A40W-08	DSCR4-001	KNOWN	basic|appris_candidate|CCDS	protein_coding	protein_coding	OTTHUMT00000194834.1	1	0	0	16	166	0	26		0	0	0	0	26	2		0	0	0	0	0	2	1	0.999944	16	165	0	26	2								-19.995100	1	1	121412	2	34	1	1	2	3	2.074021	0	0.200000	1.880000	0.211823	0.930000	0.550000	1.000000	1.000000	0.882951	0.930000	1	0.720000	1.000000
TRAPPC10	7109	broad.mit.edu	37	21	45502791	45502791	+	Missense_Mutation	SNP	A	A	G			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr21:45502791A>G	ENST00000291574.4	+	14	2021	c.1846A>G	c.(1846-1848)Atg>Gtg	p.M616V		NM_003274.4	NP_003265.3	P48553	TPC10_HUMAN	trafficking protein particle complex 10			41					GTACAGCCAGATGCCTGTGCC	0.517000																								0							SO:0001583	missense			ENST00000291574.4	0	1	hg19	CCDS13704.1	.	.	.	.	.	.	.	.	.	.	A	15.54	2.864973	0.51482	.	.	ENSG00000160218	ENST00000291574	T	0.41400	1.0	5.58	4.39	0.52855	.	0.036580	0.85682	D	0.000000	T	0.31827	0.0809	L	0.29908	0.895	0.43069	D	0.994707	P	0.40431	0.717	B	0.38755	0.281	T	0.06643	-1.0815	10	0.44086	T	0.13	.	12.1873	0.54247	0.8569:0.1431:0.0:0.0	.	616	P48553	TPC10_HUMAN	V	616	ENSP00000291574:M616V	ENSP00000291574:M616V	M	+	1	0	TRAPPC10	44327219	1.000000	0.71417	1.000000	0.80357	0.916000	0.54674	5.282000	0.65615	0.894000	0.36317	0.533000	0.62120	ATG		TCGA-2J-AABK-01A-31D-A40W-08	TRAPPC10-001	KNOWN	basic|appris_principal|exp_conf|CCDS	protein_coding	protein_coding	OTTHUMT00000195737.1	0	0	0	6	517	0	118	0	1.007299e-02	0	11	0	118	2		0	0	0	0	0	2	1	0.962561	6	505	0	116	2								-3.076553	1	1	121412	1	33	1	0	1	1	1.851892	1	0.200000	1.880000	0.120879	0.100000	0.040000	0.210000	0.100000	0.119651	0.100000	0	0.070000	0.160000
COL18A1	80781	broad.mit.edu	37	21	46902721	46902721	+	Missense_Mutation	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08			G	A	G	G		Valid	Somatic	Phase_I	WXS	RNA			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr21:46902721G>A	ENST00000359759.4	+	14	2953	c.2932G>A	c.(2932-2934)Gcc>Acc	p.A978T	COL18A1_ENST00000355480.5_Missense_Mutation_p.A743T|COL18A1_ENST00000400337.2_Missense_Mutation_p.A563T			P39060	COIA1_HUMAN	collagen, type XVIII, alpha 1			25					TGAAGCAGGCGCCCCAGGACA	0.592000																								0							SO:0001583	missense			ENST00000359759.4	1	1	hg19		.	.	.	.	.	.	.	.	.	.	G	11.05	1.524339	0.27299	0.0	7.17E-4	ENSG00000182871	ENST00000400337;ENST00000355480;ENST00000359759	D;D;D	0.94232	-3.23;-3.38;-3.38	2.62	-1.63	0.08345	.	.	.	.	.	D	0.84483	0.5482	L	0.37850	1.14	0.21386	N	0.999707	B;B;B	0.24576	0.106;0.086;0.086	B;B;B	0.13407	0.009;0.005;0.005	T	0.69007	-0.5259	9	0.12766	T	0.61	.	3.4304	0.07426	0.4039:0.205:0.3911:0.0	.	978;743;563	P39060;P39060-1;P39060-2	COIA1_HUMAN;.;.	T	563;743;978	ENSP00000383191:A563T;ENSP00000347665:A743T;ENSP00000352798:A978T	ENSP00000347665:A743T	A	+	1	0	COL18A1	45727149	0.002000	0.14202	0.122000	0.21767	0.049000	0.14656	0.305000	0.19254	-0.414000	0.07495	0.549000	0.68633	GCC		TCGA-2J-AABK-01A-31D-A40W-08	COL18A1-201	KNOWN	basic|appris_principal	protein_coding	protein_coding	OTTHUMT00000206827.1	0	0	0	19	198	0	32	1	9.989867e-01	5	114	0	32	2		0	0	0	0	0	2	1	0.999991	19	194	0	32	2								-3.221877	1	1	120984	43	47	1	0	1	1	1.851892	1	0.200000	1.880000	0.120879	0.770000	0.490000	1.000000	1.000000	0.780327	0.770000	0	0.620000	0.940000
PICK1	9463	broad.mit.edu	37	22	38470363	38470363	+	Missense_Mutation	SNP	G	G	C			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr22:38470363G>C	ENST00000404072.3	+	12	1231	c.884G>C	c.(883-885)cGc>cCc	p.R295P	PICK1_ENST00000356976.3_Missense_Mutation_p.R295P|RP5-1039K5.13_ENST00000445483.1_RNA	NM_001039583.1|NM_001039584.1	NP_001034672.1|NP_001034673.1	Q9NRD5	PICK1_HUMAN	protein interacting with PRKCA 1			13	Melanoma(58;0.045)				TATGAGTACCGCCTGATCCTG	0.682000											OREG0026555	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)												0							SO:0001583	missense			ENST00000404072.3	0	1	hg19	CCDS13965.1	.	.	.	.	.	.	.	.	.	.	G	32	5.137385	0.94517	.	.	ENSG00000100151	ENST00000404072;ENST00000356976	T;T	0.80393	-1.37;-1.37	4.57	4.57	0.56435	Arfaptin-like (3);	0.000000	0.85682	D	0.000000	D	0.90669	0.7073	M	0.85299	2.745	0.80722	D	1	D	0.89917	1.0	D	0.91635	0.999	D	0.92404	0.5932	10	0.72032	D	0.01	-16.2978	17.7234	0.88358	0.0:0.0:1.0:0.0	.	295	Q9NRD5	PICK1_HUMAN	P	295	ENSP00000385205:R295P;ENSP00000349465:R295P	ENSP00000349465:R295P	R	+	2	0	PICK1	36800309	1.000000	0.71417	1.000000	0.80357	0.979000	0.70002	7.159000	0.77483	2.251000	0.74343	0.563000	0.77884	CGC		TCGA-2J-AABK-01A-31D-A40W-08	PICK1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000321569.2	0	0	0	5	185	0	38	1	7.879793e-01	2	106	0	38	2		0	0	0	0	0	2	1	0.930082	5	176	0	38	2								-6.904693	1	1	0	0		1	0	0	0	2.011383	0	0.200000	1.880000	0.191919	0.280000	0.100000	0.560000	0.250000	0.302552	0.280000	0	0.170000	0.420000
BIRC6	57448	broad.mit.edu	37	2	32774494	32774494	+	Missense_Mutation	SNP	C	C	T			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr2:32774494C>T	ENST00000421745.2	+	65	13224	c.13090C>T	c.(13090-13092)Ctc>Ttc	p.L4364F		NM_016252.3	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat containing 6			172	Acute lymphoblastic leukemia(172;0.155)				TCTCGAGCTTCTCAGTCAGTC	0.433000													Pancreas(94;175 1509 16028 18060 45422)											0							SO:0001583	missense			ENST00000421745.2	1	1	hg19	CCDS33175.2	.	.	.	.	.	.	.	.	.	.	C	22.4	4.288897	0.80914	.	.	ENSG00000115760	ENST00000421745	D	0.84730	-1.89	5.67	5.67	0.87782	.	0.000000	0.85682	D	0.000000	D	0.92231	0.7536	M	0.71581	2.175	0.80722	D	1	D	0.71674	0.998	D	0.78314	0.991	D	0.92385	0.5916	10	0.72032	D	0.01	.	19.7806	0.96414	0.0:1.0:0.0:0.0	.	4364	Q9NR09	BIRC6_HUMAN	F	4364	ENSP00000393596:L4364F	ENSP00000393596:L4364F	L	+	1	0	BIRC6	32627998	1.000000	0.71417	0.998000	0.56505	0.524000	0.34500	7.818000	0.86416	2.669000	0.90835	0.650000	0.86243	CTC		TCGA-2J-AABK-01A-31D-A40W-08	BIRC6-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000318769.3	1	0	1	43	420	0	74	1	9.821971e-01	15	49	0	74	2		0	0	0	0	0	2	1	1.000000	42	412	0	71	2								-3.318794	1	1	0	0		1	1	2	3	2.028219	0	0.200000	1.880000	0.203187	0.930000	0.690000	1.000000	1.000000	0.913968	0.930000	1	0.800000	1.000000
CEBPZ	10153	broad.mit.edu	37	2	37455921	37455921	+	Missense_Mutation	SNP	C	C	T			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr2:37455921C>T	ENST00000234170.5	-	2	560	c.415G>A	c.(415-417)Gtg>Atg	p.V139M	NDUFAF7_ENST00000336237.6_5'Flank|NDUFAF7_ENST00000002125.4_5'Flank	NM_005760.2	NP_005751.2	Q03701	CEBPZ_HUMAN	CCAAT/enhancer binding protein (C/EBP), zeta			28		all_hematologic(82;0.21)			TTATTTTTCACCTTATTAACT	0.313000																								0							SO:0001583	missense			ENST00000234170.5	1	1	hg19	CCDS1787.1	.	.	.	.	.	.	.	.	.	.	C	0.436	-0.901015	0.02472	.	.	ENSG00000115816	ENST00000234170;ENST00000545744;ENST00000446769	T;T	0.02498	4.27;4.27	5.32	2.46	0.29980	.	1.732560	0.02990	N	0.146738	T	0.04679	0.0127	L	0.54323	1.7	0.09310	N	1	B	0.33073	0.396	B	0.25987	0.065	T	0.42531	-0.9446	10	0.87932	D	0	.	7.308	0.26459	0.0:0.5701:0.0:0.4299	.	139	Q03701	CEBPZ_HUMAN	M	139;139;90	ENSP00000234170:V139M;ENSP00000391881:V90M	ENSP00000234170:V139M	V	-	1	0	CEBPZ	37309425	0.000000	0.05858	0.220000	0.23810	0.024000	0.10985	0.321000	0.19558	0.208000	0.20626	0.655000	0.94253	GTG		TCGA-2J-AABK-01A-31D-A40W-08	CEBPZ-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000218569.2	1	0	0	38	469	0	121	1	5.066188e-01	2	20	0	121	2		0	0	0	0	0	2	1	1.000000	37	465	0	119	2								-9.910969	1	1	0	0		1	1	2	3	2.028219	0	0.200000	1.880000	0.203187	0.750000	0.540000	1.000000	0.750000	0.768619	0.750000	0	0.640000	0.890000
USP39	10713	broad.mit.edu	37	2	85857980	85857980	+	Missense_Mutation	SNP	C	C	T			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr2:85857980C>T	ENST00000323701.6	+	6	870	c.860C>T	c.(859-861)cCt>cTt	p.P287L	USP39_ENST00000409766.3_Missense_Mutation_p.P287L|USP39_ENST00000450066.2_Missense_Mutation_p.P184L|USP39_ENST00000409470.1_Missense_Mutation_p.P287L|USP39_ENST00000409025.1_Missense_Mutation_p.P287L|USP39_ENST00000459775.1_3'UTR	NM_006590.3	NP_006581.2	Q53GS9	SNUT2_HUMAN	ubiquitin specific peptidase 39			19					CTCTGGAACCCTCGAAATTTC	0.438000																								0							SO:0001583	missense			ENST00000323701.6	1	1	hg19	CCDS33234.1	.	.	.	.	.	.	.	.	.	.	C	32	5.190236	0.94923	.	.	ENSG00000168883	ENST00000450066;ENST00000409268;ENST00000409025;ENST00000409470;ENST00000323701;ENST00000409766	T;T;T;T;T	0.30182	1.54;1.54;1.54;1.54;1.54	5.97	5.97	0.96955	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (2);	0.000000	0.85682	D	0.000000	T	0.68100	0.2964	H	0.94734	3.575	0.80722	D	1	D;P;D;D;D;D	0.89917	0.986;0.954;0.998;0.999;1.0;0.993	P;D;D;D;D;D	0.79784	0.898;0.934;0.971;0.991;0.993;0.943	T	0.76337	-0.2996	10	0.72032	D	0.01	-7.7009	17.9074	0.88923	0.0:1.0:0.0:0.0	.	184;209;287;287;287;287	B4DHT4;B7Z7L9;G5E9H0;B3KM40;B9A018;Q53GS9	.;.;.;.;.;SNUT2_HUMAN	L	184;287;287;287;287;287	ENSP00000396133:P184L;ENSP00000386572:P287L;ENSP00000386864:P287L;ENSP00000312981:P287L;ENSP00000386803:P287L	ENSP00000312981:P287L	P	+	2	0	USP39	85711491	1.000000	0.71417	1.000000	0.80357	0.991000	0.79684	7.390000	0.79816	2.835000	0.97688	0.591000	0.81541	CCT		TCGA-2J-AABK-01A-31D-A40W-08	USP39-009	NOVEL	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000329892.1	1	0	1	41	555	0	137	1	9.807415e-01	18	68	0	137	2		0	0	0	0	0	2	1	1.000000	41	550	0	137	2								-2.920851	1	1	0	0		1	1	2	3	2.028219	0	0.200000	1.880000	0.203187	0.690000	0.500000	1.000000	0.690000	0.708958	0.690000	0	0.590000	0.820000
COL6A6	131873	broad.mit.edu	37	3	130354557	130354557	+	Silent	SNP	C	C	T			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr3:130354557C>T	ENST00000358511.6	+	27	5074	c.5043C>T	c.(5041-5043)gaC>gaT	p.D1681D	COL6A6_ENST00000453409.2_Silent_p.D1681D	NM_001102608.1	NP_001096078.1	A6NMZ7	CO6A6_HUMAN	collagen, type VI, alpha 6			134					AGATTGGGGACCCTGGTGGTC	0.373000																								0							SO:0001819	synonymous_variant			ENST00000358511.6	0	1	hg19	CCDS46911.1																																																																																				TCGA-2J-AABK-01A-31D-A40W-08	COL6A6-001	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000356705.5	1	0	0	9	141	0	17		0	0	0	0	17	2		0	0	0	0	0	2	1	0.994502	9	140	0	17	2								-12.771620	1	1	0	0		1	0	0	0	1.976050	0	0.200000	1.880000	0.178645	0.590000	0.290000	1.000000	1.000000	0.617686	0.590000	0	0.420000	0.800000
NBEAL2	23218	broad.mit.edu	37	3	47041634	47041634	+	Missense_Mutation	SNP	C	C	G			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr3:47041634C>G	ENST00000450053.3	+	27	4224	c.4045C>G	c.(4045-4047)Ctc>Gtc	p.L1349V	NBEAL2_ENST00000383740.2_5'UTR|NBEAL2_ENST00000292309.5_Intron	NM_015175.2	NP_055990.1	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2			51		Acute lymphoblastic leukemia(5;0.0534)			TTACCATGCTCTCTCCCCATT	0.607000																								0							SO:0001583	missense			ENST00000450053.3	1	1	hg19	CCDS46817.1	.	.	.	.	.	.	.	.	.	.	C	21.4	4.150562	0.78001	.	.	ENSG00000160796	ENST00000450053	T	0.57436	0.4	5.48	4.61	0.57282	.	.	.	.	.	T	0.44393	0.1291	L	0.55481	1.735	0.80722	D	1	P	0.48764	0.915	B	0.36959	0.237	T	0.46317	-0.9200	9	0.46703	T	0.11	.	11.9191	0.52781	0.0:0.9153:0.0:0.0847	.	1349	Q6ZNJ1	NBEL2_HUMAN	V	1349	ENSP00000415034:L1349V	ENSP00000415034:L1349V	L	+	1	0	NBEAL2	47016638	0.957000	0.32711	0.784000	0.31847	0.955000	0.61496	2.363000	0.44178	1.320000	0.45209	0.561000	0.74099	CTC		TCGA-2J-AABK-01A-31D-A40W-08	NBEAL2-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000344363.3	1	0	1	25	553	0	120	1	8.044325e-01	9	60	0	120	2		0	0	0	0	0	2	1	1.000000	25	543	0	117	2								-3.234949	1	1	121090	1	33	1	0	0	0	1.918343	0	0.200000	1.880000	0.152542	0.400000	0.270000	0.580000	0.410000	0.419112	0.400000	0	0.330000	0.500000
WDR6	11180	broad.mit.edu	37	3	49049685	49049685	+	Missense_Mutation	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08			G	A	G	G		Valid	Somatic	Phase_I	WXS	RNA			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr3:49049685G>A	ENST00000608424.1	+	2	757	c.718G>A	c.(718-720)Gac>Aac	p.D240N	WDR6_ENST00000415265.2_Intron|WDR6_ENST00000489684.1_3'UTR|WDR6_ENST00000395474.3_Missense_Mutation_p.D270N|WDR6_ENST00000448293.1_Missense_Mutation_p.D189N			Q9NNW5	WDR6_HUMAN	WD repeat domain 6			26					GAAGGTGGGCGACCTGCGAGT	0.552000																								0							SO:0001583	missense			ENST00000608424.1	1	1	hg19		.	.	.	.	.	.	.	.	.	.	G	14.29	2.491437	0.44249	.	.	ENSG00000178252	ENST00000395474;ENST00000448293	T;D	0.93953	-0.13;-3.32	5.32	5.32	0.75619	WD40/YVTN repeat-like-containing domain (1);WD40 repeat-like-containing domain (1);WD40-repeat-containing domain (1);	0.190971	0.47455	D	0.000227	D	0.85279	0.5660	L	0.38531	1.155	0.35719	D	0.817028	P;P;B	0.40107	0.703;0.703;0.266	B;B;B	0.20384	0.029;0.029;0.019	D	0.86499	0.1802	10	0.17369	T	0.5	-34.5279	12.2959	0.54847	0.0827:0.0:0.9173:0.0	.	111;240;189	B4DK45;Q9NNW5;E9PDU5	.;WDR6_HUMAN;.	N	270;189	ENSP00000378857:D270N;ENSP00000413432:D189N	ENSP00000378857:D270N	D	+	1	0	WDR6	49024689	0.998000	0.40836	0.997000	0.53966	0.973000	0.67179	3.303000	0.51858	2.650000	0.89964	0.561000	0.74099	GAC		TCGA-2J-AABK-01A-31D-A40W-08	WDR6-024	NOVEL	basic|appris_principal	protein_coding	protein_coding	OTTHUMT00000471652.1	1	0	1	53	432	0	78	1	9.999159e-01	6	107	0	78	2		0	0	0	0	0	2	1	1.000000	52	430	0	74	2								-18.181600	1	1	0	0		1	0	0	0	1.918343	0	0.200000	1.880000	0.152542	0.990000	0.780000	1.000000	1.000000	0.963261	0.990000	1	0.890000	1.000000
WNT5A	7474	broad.mit.edu	37	3	55508430	55508430	+	Missense_Mutation	SNP	C	C	T			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr3:55508430C>T	ENST00000474267.1	-	5	1140	c.619G>A	c.(619-621)Gcc>Acc	p.A207T	WNT5A_ENST00000264634.4_Missense_Mutation_p.A207T|WNT5A_ENST00000497027.1_Missense_Mutation_p.A192T			P41221	WNT5A_HUMAN	wingless-type MMTV integration site family, member 5A			13					GAGCCCTTGGCGTGGATGCGC	0.682000																								0							SO:0001583	missense			ENST00000474267.1	0	1	hg19	CCDS46850.1	.	.	.	.	.	.	.	.	.	.	C	16.77	3.216001	0.58452	.	.	ENSG00000114251	ENST00000474267;ENST00000264634;ENST00000536765;ENST00000497027;ENST00000482079	T;T;T;D	0.84660	-1.03;-1.03;-1.02;-1.88	4.84	3.82	0.43975	.	0.329686	0.32987	N	0.005409	T	0.74053	0.3666	L	0.38838	1.175	0.31722	N	0.6382	B	0.06786	0.001	B	0.06405	0.002	T	0.66097	-0.6008	10	0.18710	T	0.47	.	7.1809	0.25772	0.203:0.4728:0.3242:0.0	.	207	P41221	WNT5A_HUMAN	T	207;207;118;192;192	ENSP00000417310:A207T;ENSP00000264634:A207T;ENSP00000420104:A192T;ENSP00000418184:A192T	ENSP00000264634:A207T	A	-	1	0	WNT5A	55483470	1.000000	0.71417	1.000000	0.80357	0.973000	0.67179	3.044000	0.49830	2.387000	0.81309	0.557000	0.71058	GCC		TCGA-2J-AABK-01A-31D-A40W-08	WNT5A-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000350793.3	0	0	0	4	124	0	16	0	5.097955e-03	0	3	0	16	2		0	0	0	0	0	2	1	0.887835	4	122	0	15	2								-6.866657	1	1	0	0		1	0	0	0	1.918343	0	0.200000	1.880000	0.152542	0.310000	0.100000	0.660000	0.280000	0.347378	0.310000	0	0.190000	0.490000
KIAA1211	57482	broad.mit.edu	37	4	57193838	57193838	+	Silent	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr4:57193838G>A	ENST00000504228.1	+	9	3675	c.3570G>A	c.(3568-3570)gcG>gcA	p.A1190A	KIAA1211_ENST00000264229.6_Silent_p.A1190A|KIAA1211_ENST00000541073.1_Silent_p.A1183A			Q6ZU35	K1211_HUMAN	KIAA1211			65	Glioma(25;0.08)|all_neural(26;0.101)				CTCCCCCAGCGCCGCTGGTAA	0.483000																								0							SO:0001819	synonymous_variant			ENST00000504228.1	0	1	hg19	CCDS43230.1																																																																																				TCGA-2J-AABK-01A-31D-A40W-08	KIAA1211-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000362097.2	0	0	0	9	759	0	99	0	2.400753e-02	0	18	0	99	2		0	0	0	0	0	2	1	0.993665	9	743	0	99	2								-2.598773	1	1	120800	2	35	1	0	0	0	1.949948	0	0.200000	1.880000	0.166667	0.110000	0.050000	0.200000	0.110000	0.123867	0.110000	0	0.080000	0.160000
CRMP1	1400	broad.mit.edu	37	4	5837708	5837708	+	Silent	SNP	C	C	T			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr4:5837708C>T	ENST00000397890.2	-	11	1429	c.1215G>A	c.(1213-1215)tcG>tcA	p.S405S	CRMP1_ENST00000512574.1_Silent_p.S403S|CRMP1_ENST00000511535.1_5'UTR|CRMP1_ENST00000324989.7_Silent_p.S519S	NM_001313.3	NP_001304.1	Q14194	DPYL1_HUMAN	collapsin response mediator protein 1	p.S519S(1)		36					CGTCGGCATCCGAGCCCACGG	0.522000																								1	Substitution - coding silent(1)						SO:0001819	synonymous_variant			ENST00000397890.2	0	1	hg19	CCDS43207.1																																																																																				TCGA-2J-AABK-01A-31D-A40W-08	CRMP1-003	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000358871.1	0	0	0	5	524	0	110	0	4.643201e-02	0	29	0	110	2		0	0	0	0	0	2	1	0.932291	6	506	0	105	2								-2.496906	0	1	0	0		1	0	0	0	1.949948	0	0.200000	1.880000	0.166667	0.090000	0.030000	0.200000	0.090000	0.107454	0.090000	0	0.050000	0.150000
PCDHGA8	9708	broad.mit.edu	37	5	140773115	140773115	+	Silent	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr5:140773115G>A	ENST00000398604.2	+	1	735	c.735G>A	c.(733-735)ccG>ccA	p.P245P	PCDHGB3_ENST00000576222.1_Intron|PCDHGA7_ENST00000518325.1_Intron|PCDHGA2_ENST00000394576.2_Intron|PCDHGB1_ENST00000523390.1_Intron|PCDHGB2_ENST00000522605.1_Intron|PCDHGA1_ENST00000517417.1_Intron|PCDHGA4_ENST00000571252.1_Intron|PCDHGA5_ENST00000518069.1_Intron|PCDHGA6_ENST00000517434.1_Intron|PCDHGA3_ENST00000253812.6_Intron|PCDHGB4_ENST00000519479.1_Intron	NM_032088.1	NP_114477.1	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8			51			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		TTCCTCACCCGATTTACCGAG	0.567000																								0							SO:0001819	synonymous_variant			ENST00000398604.2	0	1	hg19	CCDS47291.1																																																																																				TCGA-2J-AABK-01A-31D-A40W-08	PCDHGA8-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000376972.1	0	0	0	10	582	0	116		0	0	0	0	116	2		0	0	0	0	0	2	1	0.996672	10	573	0	112	2								-2.500870	1	1	0	0		1	0	0	0	1.949583	0	0.200000	1.880000	0.166667	0.160000	0.080000	0.280000	0.160000	0.176282	0.160000	0	0.110000	0.230000
PROP1	5626	broad.mit.edu	37	5	177421284	177421284	+	Missense_Mutation	SNP	C	C	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr5:177421284C>A	ENST00000308304.2	-	2	473	c.165G>T	c.(163-165)agG>agT	p.R55S		NM_006261.4	NP_006252	O75360	PROP1_HUMAN	PROP paired-like homeobox 1			13	all_cancers(89;0.00176)|Renal(175;0.000269)|Lung NSC(126;0.00858)|all_lung(126;0.0139)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		GCGGGGAGAACCTTGATCTCC	0.662000																								0							SO:0001583	missense			ENST00000308304.2	0	1	hg19	CCDS4430.1	.	.	.	.	.	.	.	.	.	.	.	7.946	0.743725	0.15642	.	.	ENSG00000175325	ENST00000308304	D	0.89123	-2.47	2.49	-1.51	0.08664	Homeodomain-related (1);	0.319443	0.22765	N	0.055904	T	0.69860	0.3158	L	0.29908	0.895	0.09310	N	1	P	0.39480	0.675	B	0.28553	0.091	T	0.66380	-0.5938	10	0.10377	T	0.69	-4.9502	2.364	0.04314	0.2286:0.369:0.0:0.4024	.	55	O75360	PROP1_HUMAN	S	55	ENSP00000311290:R55S	ENSP00000311290:R55S	R	-	3	2	PROP1	177353890	0.000000	0.05858	0.001000	0.08648	0.209000	0.24338	0.413000	0.21148	-0.354000	0.08212	0.306000	0.20318	AGG		TCGA-2J-AABK-01A-31D-A40W-08	PROP1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000253472.1	1	0	0	12	91	0	14		0	0	0	0	14	2		0	0	0	0	0	2	1	0.999220	11	90	0	14	2								-19.550380	1	1	0	0		1	0	0	0	1.949583	0	0.200000	1.880000	0.166667	0.990000	0.610000	1.000000	1.000000	0.939087	0.990000	1	0.820000	1.000000
ANKRD34B	340120	broad.mit.edu	37	5	79854551	79854551	+	Nonsense_Mutation	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr5:79854551G>A	ENST00000338682.3	-	5	1960	c.1288C>T	c.(1288-1290)Cga>Tga	p.R430*		NM_001004441.2	NP_001004441.2	A5PLL1	AN34B_HUMAN	ankyrin repeat domain 34B			28		Lung NSC(167;0.0427)|all_lung(232;0.0464)|Ovarian(174;0.113)			CCTGAACCTCGCCTTTCTAAA	0.468000																								0							SO:0001587	stop_gained			ENST00000338682.3	0	1	hg19	CCDS34194.1	.	.	.	.	.	.	.	.	.	.	G	40	8.135039	0.98670	.	.	ENSG00000189127	ENST00000338682	.	.	.	6.04	6.04	0.98038	.	0.000000	0.64402	D	0.000006	.	.	.	.	.	.	0.80722	D	1	.	.	.	.	.	.	.	.	.	.	0.02654	T	1	-15.0151	15.5464	0.76104	0.0:0.1383:0.8617:0.0	.	.	.	.	X	430	.	ENSP00000339802:R430X	R	-	1	2	ANKRD34B	79890307	1.000000	0.71417	0.998000	0.56505	0.154000	0.21943	2.812000	0.47994	2.873000	0.98535	0.563000	0.77884	CGA		TCGA-2J-AABK-01A-31D-A40W-08	ANKRD34B-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000369475.1	0	0	0	16	424	0	97		0	0	0	0	97	2		0	0	0	0	0	2	1	0.999927	16	418	0	93	2								-3.132744	1	1	0	0		1	0	0	0	1.949583	0	0.200000	1.880000	0.166667	0.350000	0.200000	0.540000	0.340000	0.365047	0.350000	0	0.270000	0.450000
VARS	7407	broad.mit.edu	37	6	31752372	31752372	+	Splice_Site	SNP	C	C	T			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr6:31752372C>T	ENST00000375663.3	-	11	1907	c.1467G>A	c.(1465-1467)gaG>gaA	p.E489E	VARS_ENST00000482996.1_5'Flank|VARS_ENST00000444930.2_Splice_Site_p.E194E	NM_006295.2	NP_006286.1	P26640	SYVC_HUMAN	valyl-tRNA synthetase			30				L-Valine(DB00161)	GGGGGCGCACCTCAATGTCAG	0.582000																								0							SO:0001630	splice_region_variant			ENST00000375663.3	1	0	hg19	CCDS34412.1																																																																																				TCGA-2J-AABK-01A-31D-A40W-08	VARS-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000076619.2	1	0	0	13	269	0	46	1	8.789927e-01	5	75	0	46	2		0	0	0	0	0	2	1	0.999464	13	261	0	46	2								-3.705078	1	1	121292	1	33	1	0	0	0	1.941004	0	0.200000	1.880000	0.163180	0.440000	0.250000	0.700000	0.440000	0.462719	0.440000	0	0.330000	0.580000
PBX2	5089	broad.mit.edu	37	6	32157563	32157563	+	Missense_Mutation	SNP	C	C	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr6:32157563C>A	ENST00000375050.4	-	1	400	c.130G>T	c.(130-132)Gtc>Ttc	p.V44F		NM_002586.4	NP_002577.2	P40425	PBX2_HUMAN	pre-B-cell leukemia homeobox 2	p.V44F(2)		14					CCTCCCGGGACCCCCCCGCTA	0.711000																								2	Substitution - Missense(2)						SO:0001583	missense			ENST00000375050.4	0	1	hg19	CCDS4748.1	.	.	.	.	.	.	.	.	.	.	C	18.17	3.564390	0.65651	.	.	ENSG00000204304	ENST00000375050	T	0.80653	-1.4	4.56	4.56	0.56223	.	0.219742	0.22684	N	0.056918	T	0.49098	0.1537	N	0.14661	0.345	0.37506	D	0.916978	B;B	0.30542	0.284;0.176	B;B	0.15052	0.012;0.012	T	0.58999	-0.7536	10	0.52906	T	0.07	-5.1027	10.8156	0.46573	0.0:0.8072:0.1928:0.0	.	44;44	Q7KZE5;P40425	.;PBX2_HUMAN	F	44	ENSP00000364190:V44F	ENSP00000364190:V44F	V	-	1	0	PBX2	32265541	0.974000	0.33945	1.000000	0.80357	0.971000	0.66376	1.692000	0.37731	2.062000	0.61559	0.542000	0.68232	GTC		TCGA-2J-AABK-01A-31D-A40W-08	PBX2-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000076194.4	0	0	0	5	141	0	24	0	1.698378e-01	0	18	0	24	2		0	0	0	0	0	2	1	0.934002	5	137	0	23	2								-2.326668	0	1	118800	10	33	1	0	0	0	1.941004	0	0.200000	1.880000	0.163180	0.340000	0.130000	0.680000	0.310000	0.373986	0.340000	0	0.220000	0.510000
DOPEY1	23033	broad.mit.edu	37	6	83847927	83847927	+	Missense_Mutation	SNP	A	A	G			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr6:83847927A>G	ENST00000349129.2	+	21	4426	c.4166A>G	c.(4165-4167)aAa>aGa	p.K1389R	DOPEY1_ENST00000369739.3_Missense_Mutation_p.K1380R|DOPEY1_ENST00000484282.1_3'UTR|DOPEY1_ENST00000237163.5_Missense_Mutation_p.K1370R	NM_015018.3	NP_055833.2	Q5JWR5	DOP1_HUMAN	dopey family member 1			67		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)			TCTGCCATCAAAGCCATCTTG	0.373000																								0							SO:0001583	missense			ENST00000349129.2	1	1	hg19	CCDS4996.1	.	.	.	.	.	.	.	.	.	.	A	10.18	1.278737	0.23307	.	.	ENSG00000083097	ENST00000349129;ENST00000237163;ENST00000369739	T;T	0.42900	0.96;0.96	6.16	6.16	0.99307	.	0.140329	0.64402	D	0.000004	T	0.20455	0.0492	N	0.25201	0.72	0.80722	D	1	P;P;P	0.50156	0.932;0.791;0.791	P;B;B	0.45310	0.476;0.196;0.196	T	0.03829	-1.1000	10	0.12430	T	0.62	.	16.8061	0.85666	1.0:0.0:0.0:0.0	.	1280;1380;1389	E1P545;B2RWN9;Q5JWR5	.;.;DOP1_HUMAN	R	1389;1370;1370	ENSP00000195654:K1389R;ENSP00000237163:K1370R	ENSP00000237163:K1370R	K	+	2	0	DOPEY1	83904646	1.000000	0.71417	1.000000	0.80357	0.975000	0.68041	3.770000	0.55310	2.367000	0.80283	0.528000	0.53228	AAA		TCGA-2J-AABK-01A-31D-A40W-08	DOPEY1-002	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000043785.2	1	0	0	28	536	0	92	0	2.355436e-01	0	18	0	92	2		0	0	0	0	0	2	1	1.000000	28	532	0	91	2								-20.000000	1	1	0	0		1	0	0	0	1.941004	0	0.200000	1.880000	0.163180	0.470000	0.320000	0.660000	0.470000	0.485377	0.470000	0	0.390000	0.570000
BRAF	673	broad.mit.edu	37	7	140481423	140481423	+	Missense_Mutation	SNP	C	C	G			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr7:140481423C>G	ENST00000288602.6	-	11	1445	c.1385G>C	c.(1384-1386)aGa>aCa	p.R462T		NM_004333.4	NP_004324.2	P15056	BRAF_HUMAN	B-Raf proto-oncogene, serine/threonine kinase	p.R462I(2)|p.R462K(1)	SLC45A3/BRAF(2)|AGTRAP/BRAF(2)|FAM131B_ENST00000443739/BRAF(7)|AKAP9_ENST00000356239/BRAF(10)|KIAA1549/BRAF(703)|FCHSD1/BRAF(2)	27380	Melanoma(164;0.00956)			Dabrafenib(DB08912)|Regorafenib(DB08896)|Sorafenib(DB00398)|Vemurafenib(DB08881)	AGATCCAATTCTTTGTCCCAC	0.393000		61	Mis, T, O	AKAP9, KIAA1549	melanoma, colorectal, papillary thyroid, borderline ov, Non small-cell lung cancer (NSCLC), cholangiocarcinoma, pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous syndrome				Colon(40;35 892 2973 5743 27438)		Dom	yes		7	7q34	673	v-raf murine sarcoma viral oncogene homolog B1	yes	E	3	Substitution - Missense(3)						SO:0001583	missense	Familial Cancer Database	CFC, CFCS	ENST00000288602.6	1	1	hg19	CCDS5863.1	.|.	.|.	.|.	.|.	.|.	.|.	.|.	.|.	.|.	.|.	C|C	22.6|22.6	4.309763|4.309763	0.81247|0.81247	.|.	.|.	ENSG00000157764|ENSG00000157764	ENST00000496384|ENST00000288602	.|D	.|0.82167	.|-1.58	5.62|5.62	5.62|5.62	0.85841|0.85841	.|Serine-threonine/tyrosine-protein kinase (1);Protein kinase-like domain (1);Protein kinase, catalytic domain (1);	.|0.043720	.|0.85682	.|D	.|0.000000	T|T	0.78470|0.78470	0.4288|0.4288	L|L	0.39085|0.39085	1.19|1.19	0.80722|0.80722	D|D	1|1	.|B	.|0.28026	.|0.198	.|B	.|0.26094	.|0.066	T|T	0.77070|0.77070	-0.2724|-0.2724	5|10	.|0.87932	.|D	.|0	.|.	17.8428|17.8428	0.88720|0.88720	0.0:1.0:0.0:0.0|0.0:1.0:0.0:0.0	.|.	.|462	.|P15056	.|BRAF_HUMAN	Q|T	70|462	.|ENSP00000288602:R462T	.|ENSP00000288602:R462T	E|R	-|-	1|2	0|0	BRAF|BRAF	140127892|140127892	1.000000|1.000000	0.71417|0.71417	1.000000|1.000000	0.80357|0.80357	0.995000|0.995000	0.86356|0.86356	6.072000|6.072000	0.71238|0.71238	2.637000|2.637000	0.89404|0.89404	0.585000|0.585000	0.79938|0.79938	GAA|AGA		TCGA-2J-AABK-01A-31D-A40W-08	BRAF-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000348886.1	1	0	1	55	379	0	67	1	5.077965e-01	4	9	0	67	2		0	0	0	0	0	2	1	1.000000	55	373	0	66	2								-19.996730	1	1	0	0		1	1	2	3	2.032002	0	0.200000	1.880000	0.227799	0.990000	0.990000	1.000000	1.000000	0.999246	0.990000	1	0.990000	1.000000
CCL26	10344	broad.mit.edu	37	7	75401253	75401253	+	Nonsense_Mutation	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr7:75401253G>A	ENST00000394905.2	-	3	399	c.142C>T	c.(142-144)Cga>Tga	p.R48*	CCL26_ENST00000005180.4_Nonsense_Mutation_p.R48*	NM_006072.4	NP_006063.1	Q9Y258	CCL26_HUMAN	chemokine (C-C motif) ligand 26			3					TCATAGCTTCGCACCCAGGTC	0.527000																								0							SO:0001587	stop_gained			ENST00000394905.2	0	1	hg19	CCDS5578.1	1	4.578754578754579E-4	0	0.0	0	0.0	0	0.0	1	0.0013192612137203166	G	22.9	4.355434	0.82243	.	.	ENSG00000006606	ENST00000005180;ENST00000394905	.	.	.	3.61	0.592	0.17471	.	2.078680	0.02083	N	0.052554	.	.	.	.	.	.	0.80722	D	1	.	.	.	.	.	.	.	.	.	.	0.16420	T	0.52	.	4.5482	0.12092	0.1229:0.0:0.5932:0.2838	.	.	.	.	X	48	.	ENSP00000005180:R48X	R	-	1	2	CCL26	75239189	0.000000	0.05858	0.000000	0.03702	0.015000	0.08874	-0.693000	0.05121	0.010000	0.14839	0.400000	0.26472	CGA		TCGA-2J-AABK-01A-31D-A40W-08	CCL26-002	KNOWN	alternative_5_UTR|basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000344900.1	1	0	1	37	321	0	38	1	5.876756e-02	2	2	0	38	2		0	0	0	0	0	2	1	1.000000	37	312	0	36	2								-13.416930	1	1	121412	1	29	1	1	2	3	2.085085	0	0.200000	1.880000	0.214145	0.990000	0.760000	1.000000	1.000000	0.968199	0.990000	1	0.910000	1.000000
CPSF1	29894	broad.mit.edu	37	8	145620538	145620538	+	Silent	SNP	C	C	T			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08			C	T	C	C		Valid	Somatic	Phase_I	WXS	RNA			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr8:145620538C>T	ENST00000349769.3	-	28	3223	c.3129G>A	c.(3127-3129)ccG>ccA	p.P1043P	MIR939_ENST00000401314.1_RNA|CPSF1_ENST00000531727.1_5'Flank	NM_013291.2	NP_037423.2	Q10570	CPSF1_HUMAN	cleavage and polyadenylation specific factor 1, 160kDa			38	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.88e-41)|Epithelial(56;1.67e-40)|all cancers(56;1.2e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0323)|Colorectal(110;0.055)		TGCGGGCACACGGCGTGTTGG	0.632000													NSCLC(133;1088 1848 27708 34777 35269)											0							SO:0001819	synonymous_variant			ENST00000349769.3	0	1	hg19	CCDS34966.1																																																																																				TCGA-2J-AABK-01A-31D-A40W-08	CPSF1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000382422.2	1	0	1	13	124	0	17	1	9.999949e-01	48	191	0	17	2		0	0	0	0	0	2	1	0.999581	13	122	0	16	2								-19.156050	1	1	121370	25	40	1	1	2	3	2.057049	0	0.200000	1.880000	0.208704	0.990000	0.550000	1.000000	1.000000	0.905056	0.990000	1	0.750000	1.000000
CLU	1191	broad.mit.edu	37	8	27462692	27462692	+	Missense_Mutation	SNP	T	T	C			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08			T	C	T	T		Valid	Somatic	Phase_I	WXS	RNA			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr8:27462692T>C	ENST00000316403.10	-	5	983	c.578A>G	c.(577-579)gAc>gGc	p.D193G	CLU_ENST00000546343.1_Missense_Mutation_p.D204G|CLU_ENST00000405140.3_Missense_Mutation_p.D193G|CLU_ENST00000523500.1_Missense_Mutation_p.D193G|CLU_ENST00000560366.1_Missense_Mutation_p.D245G			P10909	CLUS_HUMAN	clusterin			21		Ovarian(32;2.61e-05)			GAAGAACCTGTCCTGGAAGAG	0.612000																								0							SO:0001583	missense			ENST00000316403.10	0	1	hg19	CCDS47832.1	.	.	.	.	.	.	.	.	.	.	T	11.83	1.754978	0.31046	.	.	ENSG00000120885	ENST00000316403;ENST00000546343;ENST00000405140;ENST00000523500;ENST00000380446;ENST00000520012;ENST00000523589;ENST00000520796	T;T;T;T;T	0.25085	1.82;1.82;1.82;1.82;1.82	4.96	1.18	0.20946	Clusterin, N-terminal (1);	0.271710	0.40385	N	0.001116	T	0.29126	0.0724	M	0.79475	2.455	0.39868	D	0.973464	P;P;P;P	0.52316	0.916;0.952;0.873;0.625	B;B;B;B	0.43155	0.41;0.337;0.225;0.192	T	0.21586	-1.0241	10	0.66056	D	0.02	-18.8233	8.6897	0.34260	0.0:0.2008:0.0:0.7992	.	58;245;204;193	E7ETA7;P10909-2;P10909-5;P10909	.;.;.;CLUS_HUMAN	G	245;204;193;193;18;58;193;193	ENSP00000446413:D204G;ENSP00000385419:D193G;ENSP00000429620:D193G;ENSP00000431070:D193G;ENSP00000429336:D193G	ENSP00000315130:D245G	D	-	2	0	CLU	27518609	1.000000	0.71417	0.556000	0.28293	0.320000	0.28249	1.512000	0.35812	0.263000	0.21812	0.460000	0.39030	GAC		TCGA-2J-AABK-01A-31D-A40W-08	CLU-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000219953.3	0	0	0	7	199	0	27	1	1	64	5061	0	27	2		0	0	0	0	0	2	1	0.980817	7	198	0	26	2								-9.191678	1	1	0	0		1	1	2	3	2.057049	0	0.200000	1.880000	0.208704	0.370000	0.160000	1.000000	0.340000	0.436662	0.370000	0	0.250000	0.580000
DENND1A	57706	broad.mit.edu	37	9	126202749	126202749	+	Missense_Mutation	SNP	C	C	T			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr9:126202749C>T	ENST00000373624.2	-	19	1579	c.1378G>A	c.(1378-1380)Gcc>Acc	p.A460T	DENND1A_ENST00000542603.1_Missense_Mutation_p.A202T|DENND1A_ENST00000373620.3_Missense_Mutation_p.A460T|DENND1A_ENST00000473039.1_5'UTR|DENND1A_ENST00000373618.1_Missense_Mutation_p.A428T|DENND1A_ENST00000394219.3_Missense_Mutation_p.A428T|DENND1A_ENST00000394215.2_Missense_Mutation_p.A430T	NM_020946.1	NP_065997.1	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A			43					GGGGTGGGGGCGCAGCCATTC	0.622000																								0							SO:0001583	missense			ENST00000373624.2	1	1	hg19	CCDS35133.1	.	.	.	.	.	.	.	.	.	.	C	11.98	1.802047	0.31869	.	.	ENSG00000119522	ENST00000373624;ENST00000542603;ENST00000394219;ENST00000373620;ENST00000394215;ENST00000373618	T;T;T;T;T;T	0.22945	3.39;1.93;3.26;3.38;3.24;3.25	5.58	2.27	0.28462	.	0.627020	0.17144	N	0.185346	T	0.12305	0.0299	N	0.25647	0.755	0.09310	N	1	B;B;B;B;B;B;B	0.20052	0.02;0.007;0.002;0.014;0.017;0.003;0.041	B;B;B;B;B;B;B	0.12156	0.007;0.006;0.002;0.003;0.004;0.002;0.007	T	0.32666	-0.9898	10	0.07030	T	0.85	-2.3994	4.3489	0.11146	0.1645:0.4533:0.0:0.3822	.	428;418;428;430;460;460;280	Q8TEH3-6;Q8TEH3-7;Q8TEH3-4;Q8TEH3-5;Q8TEH3-2;Q8TEH3;Q9HCG4	.;.;.;.;.;DEN1A_HUMAN;.	T	460;202;428;460;430;428	ENSP00000362727:A460T;ENSP00000437457:A202T;ENSP00000377766:A428T;ENSP00000362722:A460T;ENSP00000377763:A430T;ENSP00000362720:A428T	ENSP00000362720:A428T	A	-	1	0	DENND1A	125242570	0.049000	0.20398	0.571000	0.28486	0.558000	0.35554	0.343000	0.19944	0.670000	0.31165	0.655000	0.94253	GCC		TCGA-2J-AABK-01A-31D-A40W-08	DENND1A-002	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000053997.1	0	0	0	18	241	1	33	1	5.128095e-02	5	22	1	33	5		0	0	0	0	0	2	1	0.999984	17	240	0	33	2								-19.996590	1	1	121412	1	34	1	1	2	3	2.025733	0	0.200000	1.880000	0.201597	0.700000	0.430000	1.000000	1.000000	0.717160	0.700000	0	0.550000	0.880000
CACNA1B	774	broad.mit.edu	37	9	141012490	141012490	+	Missense_Mutation	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr9:141012490G>A	ENST00000371372.1	+	43	6015	c.5870G>A	c.(5869-5871)cGt>cAt	p.R1957H	CACNA1B_ENST00000277551.2_Missense_Mutation_p.R1957H|CACNA1B_ENST00000277549.5_Missense_Mutation_p.R1151H|CACNA1B_ENST00000371355.4_Missense_Mutation_p.R1958H|CACNA1B_ENST00000371363.1_Missense_Mutation_p.R1955H|CACNA1B_ENST00000371357.1_Missense_Mutation_p.R1956H	NM_000718.3|NM_001243812.1	NP_000709.1|NP_001230741.1	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type, alpha 1B subunit			80	all_cancers(76;0.166)			Amlodipine(DB00381)|Gabapentin(DB00996)|Levetiracetam(DB01202)|Spironolactone(DB00421)|Verapamil(DB00661)	CCCCTGGAGCGTGGCCACTCC	0.617000																								0							SO:0001583	missense			ENST00000371372.1	0	1	hg19	CCDS59522.1	.	.	.	.	.	.	.	.	.	.	G	20.6	4.019883	0.75275	.	.	ENSG00000148408	ENST00000371372;ENST00000277551;ENST00000277549;ENST00000371363;ENST00000371357;ENST00000371355	D;D;D;D;D;D	0.97328	-4.07;-4.1;-4.34;-4.08;-4.06;-4.06	4.47	4.47	0.54385	.	1.579960	0.03633	N	0.238175	D	0.96632	0.8901	M	0.73962	2.25	0.80722	D	1	P;P	0.38922	0.651;0.651	B;B	0.35073	0.195;0.139	D	0.86427	0.1758	10	0.21540	T	0.41	.	16.756	0.85499	0.0:0.0:1.0:0.0	.	1956;1955	B1AQK7;B1AQK6	.;.	H	1957;1957;1151;1955;1956;1958	ENSP00000360423:R1957H;ENSP00000277551:R1957H;ENSP00000277549:R1151H;ENSP00000360414:R1955H;ENSP00000360408:R1956H;ENSP00000360406:R1958H	ENSP00000277549:R1151H	R	+	2	0	CACNA1B	140132311	0.993000	0.37304	1.000000	0.80357	0.958000	0.62258	0.082000	0.14847	2.036000	0.60181	0.561000	0.74099	CGT		TCGA-2J-AABK-01A-31D-A40W-08	CACNA1B-001	KNOWN	non_canonical_conserved|basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000055380.1	1	0	0	6	59	0	13		0	0	0	0	13	2		0	0	0	0	0	2	1	0.962210	6	56	0	12	2								-11.394230	1	1	120776	6	30	1	1	2	3	2.025733	0	0.200000	1.880000	0.201597	0.940000	0.410000	1.000000	1.000000	0.855197	0.940000	1	0.630000	1.000000
CDKN2A	1029	broad.mit.edu	37	9	21971120	21971120	+	Nonsense_Mutation	SNP	G	G	A	rs121913388		TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08			G	A	G	G		Valid	Somatic	Phase_I	WXS	targeted			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr9:21971120G>A	ENST00000304494.5	-	2	508	c.238C>T	c.(238-240)Cga>Tga	p.R80*	CDKN2A_ENST00000530628.2_Missense_Mutation_p.P94L|CDKN2A_ENST00000498124.1_Nonsense_Mutation_p.R80*|CDKN2A_ENST00000579755.1_Missense_Mutation_p.P94L|CDKN2A_ENST00000494262.1_Nonsense_Mutation_p.R29*|CDKN2A_ENST00000497750.1_Nonsense_Mutation_p.R29*|CDKN2A_ENST00000578845.2_Nonsense_Mutation_p.R29*|CDKN2A_ENST00000446177.1_Nonsense_Mutation_p.R80*|CDKN2A_ENST00000361570.3_Missense_Mutation_p.P135L|CDKN2A_ENST00000498628.2_Nonsense_Mutation_p.R29*|CDKN2A_ENST00000579122.1_Nonsense_Mutation_p.R80*|RP11-145E5.5_ENST00000404796.2_Intron|CDKN2A_ENST00000479692.2_Nonsense_Mutation_p.R29*	NM_000077.4	NP_000068.1	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A	p.0?(1315)|p.R80*(100)|p.?(44)|p.P135L(7)|p.L65fs*38(1)|p.T79fs*37(1)|p.0(1)|p.A76fs*64(1)|p.T79fs*65(1)|p.E61_L94del(1)|p.A68fs*3(1)|p.R80fs*34(1)		4199		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)			TGCACGGGTCGGGTGAGAGTG	0.726000	R80*(HSC4_UPPER_AERODIGESTIVE_TRACT)|R80*(MEWO_SKIN)	17								HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)														1474	Whole gene deletion(1316)|Substitution - Nonsense(100)|Unknown(44)|Substitution - Missense(7)|Deletion - Frameshift(6)|Deletion - In frame(1)	GRCh37	CM014695	CDKN2A	M	rs121913388	SO:0001587	stop_gained			ENST00000304494.5	0	1	hg19	CCDS6510.1	.|.	.|.	.|.	.|.	.|.	.|.	.|.	.|.	.|.	.|.	G|G	39|39	7.328457|7.328457	0.98214|0.98214	.|.	.|.	ENSG00000147889|ENSG00000147889	ENST00000361570;ENST00000530628|ENST00000304494;ENST00000446177	D;D|.	0.86497|.	-2.13;-2.02|.	5.93|5.93	5.01|5.01	0.66863|0.66863	.|.	0.000000|.	0.37136|.	N|.	0.002233|.	T|.	0.44561|.	0.1299|.	L|L	0.36672|0.36672	1.1|1.1	0.47511|0.47511	D|D	0.999443|0.999443	D|.	0.59357|.	0.985|.	B|.	0.40602|.	0.334|.	T|.	0.34825|.	-0.9813|.	10|.	0.13108|0.02654	T|T	0.6|1	-2.989|-2.989	8.7197|8.7197	0.34434|0.34434	0.0759:0.0:0.7715:0.1526|0.0759:0.0:0.7715:0.1526	.|.	135|.	Q8N726|.	CD2A2_HUMAN|.	L|X	135;94|80	ENSP00000355153:P135L;ENSP00000432664:P94L|.	ENSP00000355153:P135L|ENSP00000307101:R80X	P|R	-|-	2|1	0|2	CDKN2A|CDKN2A	21961120|21961120	0.995000|0.995000	0.38212|0.38212	1.000000|1.000000	0.80357|0.80357	0.899000|0.899000	0.52679|0.52679	2.363000|2.363000	0.44178|0.44178	1.464000|1.464000	0.47987|0.47987	0.650000|0.650000	0.86243|0.86243	CCG|CGA		TCGA-2J-AABK-01A-31D-A40W-08	CDKN2A-001	KNOWN	basic|appris_candidate|CCDS	protein_coding	protein_coding	OTTHUMT00000051915.1	1	0	0	13	101	0	13	1	9.966490e-01	10	69	0	13	2	1	9.999658e-01	14	143	0	149	2	1	0.999100	13	86	0	12	2								-2.749059	1	1	0	0		1	0	1	1	2.022665	0	0.200000	1.880000	0.198397	0.990000	0.650000	1.000000	1.000000	0.952556	0.990000	1	0.860000	1.000000
LINGO2	158038	broad.mit.edu	37	9	27949709	27949709	+	Missense_Mutation	SNP	G	G	A			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chr9:27949709G>A	ENST00000379992.2	-	6	1410	c.961C>T	c.(961-963)Cgc>Tgc	p.R321C	LINGO2_ENST00000308675.3_Missense_Mutation_p.R321C	NM_152570.2	NP_689783.1	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2			44	Melanoma(11;0.242)	all_neural(11;2.78e-09)			CGTAGGAAGCGGAGCCCTTGG	0.527000																								0							SO:0001583	missense			ENST00000379992.2	1	1	hg19	CCDS6524.1	.	.	.	.	.	.	.	.	.	.	G	14.99	2.699273	0.48307	.	.	ENSG00000174482	ENST00000379992;ENST00000308675	T;T	0.57907	0.37;0.37	5.95	5.95	0.96441	.	0.116612	0.64402	D	0.000016	T	0.71039	0.3293	M	0.63428	1.95	0.80722	D	1	D	0.89917	1.0	D	0.68621	0.959	T	0.67043	-0.5770	9	.	.	.	.	20.3931	0.98965	0.0:0.0:1.0:0.0	.	321	Q7L985	LIGO2_HUMAN	C	321	ENSP00000369328:R321C;ENSP00000310126:R321C	.	R	-	1	0	LINGO2	27939709	1.000000	0.71417	1.000000	0.80357	0.830000	0.47004	3.357000	0.52277	2.824000	0.97209	0.655000	0.94253	CGC		TCGA-2J-AABK-01A-31D-A40W-08	LINGO2-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000051978.2	0	0	0	26	309	0	55	0	7.899213e-02	0	6	0	55	2		0	0	0	0	0	2	1	1.000000	25	307	0	54	2								-2.540642	1	1	121412	12	44	1	0	1	1	2.022665	0	0.200000	1.880000	0.198397	0.770000	0.520000	1.000000	1.000000	0.783530	0.770000	0	0.630000	0.930000
GPR112	139378	broad.mit.edu	37	X	135426583	135426583	+	Missense_Mutation	SNP	A	A	T			TCGA-2J-AABK-01A-31D-A40W-08	TCGA-2J-AABK-10A-01D-A40W-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10fe2e36-6d45-4c97-b4b4-468985c589cd	e8152b10-7ebb-4153-9837-dcc6185632c2	g.chrX:135426583A>T	ENST00000394143.1	+	6	1009	c.718A>T	c.(718-720)Agt>Tgt	p.S240C	GPR112_ENST00000412101.1_Missense_Mutation_p.S35C|GPR112_ENST00000370652.1_Missense_Mutation_p.S240C|GPR112_ENST00000394141.1_Missense_Mutation_p.S35C|GPR112_ENST00000287534.4_Missense_Mutation_p.S177C	NM_153834.3	NP_722576.3	Q8IZF6	GP112_HUMAN	G protein-coupled receptor 112			199	Acute lymphoblastic leukemia(192;0.000127)				TCAAGAAAAAAGTACAACTGT	0.333000																								0							SO:0001583	missense			ENST00000394143.1	1	1	hg19	CCDS35409.1	.	.	.	.	.	.	.	.	.	.	a	12.04	1.818484	0.32145	.	.	ENSG00000156920	ENST00000394143;ENST00000370652;ENST00000412101;ENST00000287534;ENST00000394141	T;T;T;T;T	0.41065	1.19;1.19;1.01;1.01;1.01	4.3	4.3	0.51218	.	.	.	.	.	T	0.48447	0.1500	L	0.27053	0.805	0.09310	N	0.999997	D;D;D	0.89917	1.0;1.0;0.999	D;D;P	0.71414	0.973;0.957;0.907	T	0.30937	-0.9961	9	0.72032	D	0.01	.	9.3376	0.38060	1.0:0.0:0.0:0.0	.	177;35;240	Q8IZF6-2;Q8IZF6-3;Q8IZF6	.;.;GP112_HUMAN	C	240;240;35;177;35	ENSP00000377699:S240C;ENSP00000359686:S240C;ENSP00000416526:S35C;ENSP00000287534:S177C;ENSP00000377697:S35C	ENSP00000287534:S177C	S	+	1	0	GPR112	135254249	0.461000	0.25783	0.255000	0.24374	0.024000	0.10985	3.803000	0.55560	1.661000	0.50771	0.414000	0.27820	AGT		TCGA-2J-AABK-01A-31D-A40W-08	GPR112-003	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000286639.1	1	0	1	36	111	0	28		0	0	0	0	28	2		0	0	0	0	0	2	1	1.000000	36	108	0	28	2								-20.000000	1	1	0	0		1	0	1	1			0.200000	1.880000	0.200000	0.940000	0.770000	1.000000	0.990000	0.930663	0.940000	1	0.860000	0.990000
