Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	ACHILLES_Lineage_Results_Top_Genes	CGC_CancerGermlineMut	CGC_CancerMolecularGenetics	CGC_CancerSomaticMut	CGC_CancerSyndrome	CGC_Chr	CGC_ChrBand	CGC_GeneID	CGC_Name	CGC_OtherGermlineMut	CGC_TissueType	COSMIC_n_overlapping_mutations	COSMIC_overlapping_mutation_descriptions	ClinVar_ASSEMBLY	ClinVar_HGMD_ID	ClinVar_SYM	ClinVar_TYPE	ClinVar_rs	Ensembl_so_accession	Ensembl_so_term	Familial_Cancer_Genes_Reference	Familial_Cancer_Genes_Synonym	annotation_transcript	bcgsc	broad	build	ccds_id	dbNSFP_1000Gp1_AC	dbNSFP_1000Gp1_AF	dbNSFP_1000Gp1_AFR_AC	dbNSFP_1000Gp1_AFR_AF	dbNSFP_1000Gp1_AMR_AC	dbNSFP_1000Gp1_AMR_AF	dbNSFP_1000Gp1_ASN_AC	dbNSFP_1000Gp1_ASN_AF	dbNSFP_1000Gp1_EUR_AC	dbNSFP_1000Gp1_EUR_AF	dbNSFP_Ancestral_allele	dbNSFP_CADD_phred	dbNSFP_CADD_raw	dbNSFP_CADD_raw_rankscore	dbNSFP_ESP6500_AA_AF	dbNSFP_ESP6500_EA_AF	dbNSFP_Ensembl_geneid	dbNSFP_Ensembl_transcriptid	dbNSFP_FATHMM_pred	dbNSFP_FATHMM_rankscore	dbNSFP_FATHMM_score	dbNSFP_GERP_NR	dbNSFP_GERP_RS	dbNSFP_GERP_RS_rankscore	dbNSFP_Interpro_domain	dbNSFP_LRT_Omega	dbNSFP_LRT_converted_rankscore	dbNSFP_LRT_pred	dbNSFP_LRT_score	dbNSFP_LR_pred	dbNSFP_LR_rankscore	dbNSFP_LR_score	dbNSFP_MutationAssessor_pred	dbNSFP_MutationAssessor_rankscore	dbNSFP_MutationAssessor_score	dbNSFP_MutationTaster_converted_rankscore	dbNSFP_MutationTaster_pred	dbNSFP_MutationTaster_score	dbNSFP_Polyphen2_HDIV_pred	dbNSFP_Polyphen2_HDIV_rankscore	dbNSFP_Polyphen2_HDIV_score	dbNSFP_Polyphen2_HVAR_pred	dbNSFP_Polyphen2_HVAR_rankscore	dbNSFP_Polyphen2_HVAR_score	dbNSFP_RadialSVM_pred	dbNSFP_RadialSVM_rankscore	dbNSFP_RadialSVM_score	dbNSFP_Reliability_index	dbNSFP_SIFT_converted_rankscore	dbNSFP_SIFT_pred	dbNSFP_SIFT_score	dbNSFP_SLR_test_statistic	dbNSFP_SiPhy_29way_logOdds	dbNSFP_SiPhy_29way_logOdds_rankscore	dbNSFP_SiPhy_29way_pi	dbNSFP_UniSNP_ids	dbNSFP_Uniprot_aapos	dbNSFP_Uniprot_acc	dbNSFP_Uniprot_id	dbNSFP_aaalt	dbNSFP_aapos	dbNSFP_aapos_FATHMM	dbNSFP_aapos_SIFT	dbNSFP_aaref	dbNSFP_cds_strand	dbNSFP_codonpos	dbNSFP_folddegenerate	dbNSFP_genename	dbNSFP_hg18_pos1coor	dbNSFP_phastCons100way_vertebrate	dbNSFP_phastCons100way_vertebrate_rankscore	dbNSFP_phastCons46way_placental	dbNSFP_phastCons46way_placental_rankscore	dbNSFP_phastCons46way_primate	dbNSFP_phastCons46way_primate_rankscore	dbNSFP_phyloP100way_vertebrate	dbNSFP_phyloP100way_vertebrate_rankscore	dbNSFP_phyloP46way_placental	dbNSFP_phyloP46way_placental_rankscore	dbNSFP_phyloP46way_primate	dbNSFP_phyloP46way_primate_rankscore	dbNSFP_refcodon	entrez_gene_id	external_id_capture	gencode_transcript_name	gencode_transcript_status	gencode_transcript_tags	gencode_transcript_type	gene_type	havana_transcript	hgsc	igv_bad	ucsc	t_alt_count	t_ref_count	n_alt_count	n_ref_count	validation_judgement_rna	validation_power_rna	validation_tumor_alt_count_rna	validation_tumor_ref_count_rna	validation_normal_alt_count_rna	validation_normal_ref_count_rna	min_val_count_rna	validation_judgement_targeted	validation_power_targeted	validation_tumor_alt_count_targeted	validation_tumor_ref_count_targeted	validation_normal_alt_count_targeted	validation_normal_ref_count_targeted	min_val_count_targeted	validation_judgement_localAssembly	validation_power_localAssembly	t_alt_count_localAssembly	t_ref_count_localAssembly	n_alt_count_localAssembly	n_ref_count_localAssembly	min_val_count_localAssembly	validation_judgement_KRAS	validation_power_KRAS	t_alt_count_KRAS	t_ref_count_KRAS	n_alt_count_KRAS	n_ref_count_KRAS	min_val_count_KRAS	pon_loglike	pon_pass_loglike	localAssembly_detected	ExAC_AN	ExAC_AC	ExAC_LQ	passExAC	SCNA_NA	SCNA_NB	SCNA_q_hat	SCNA_tau	IS_SCNA	purity	ploidy	dna_fraction_in_tumor	CCF_hat	CCF_CI95_low	CCF_CI95_high	CCF_mode	CCF_mean	CCF_median	clonal	CCF_CI_low	CCF_CI_high
SLC6A5	9152	broad.mit.edu	37	11	20676316	20676316	+	Missense_Mutation	SNP	C	C	T	rs141654146	byFrequency	TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr11:20676316C>T	ENST00000525748.1	+	16	2569	c.2296C>T	c.(2296-2298)Cgc>Tgc	p.R766C	SLC6A5_ENST00000528440.1_3'UTR	NM_004211.3	NP_004202.2	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter transporter), member 5			63				Glycine(DB00145)	AGCTCAACACCGCGGGGAGCG	0.542000																								0							SO:0001583	missense			ENST00000525748.1	1	1	hg19	CCDS7854.1	.	.	.	.	.	.	.	.	.	.	C	25.500000	4.640687	0.878590	2.27E-4	2.33E-4	ENSG00000165970	ENST00000525748	T	0.75938	-0.98	6.040000	6.040000	0.980380	.	0.000000	0.85682	D	0.000000	T	0.82144	0.4973	L	0.34521	1.04	0.807220	D	1.000000	D	0.89917	1.0	D	0.87578	0.998	T	0.82748	-0.0304	10	0.87932	D	0	.	20.594800	0.994390	0.0:1.0:0.0:0.0	.	766	Q9Y345	SC6A5_HUMAN	C	766	ENSP00000434364:R766C	ENSP00000434364:R766C	R	+	1	0	SLC6A5	20632892	1	0.714170	1	0.803570	0.983000	0.724000	5.645000	0.679090	2.873000	0.985350	0.563000	0.778840	CGC		TCGA-F2-A44H-01A-11D-A26I-08	SLC6A5-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000387497.2	0	0	0	24	643	0	93		0	0	0	0	93	2		0	0	0	0	0	2	1	1.000000	24	636	0	92	2								-2.652367	1	1	121412	8	44	1	0	1	1	1.800142	1	0.260000	1.820000	0.149425	0.230000	0.150000	0.340000	0.240000	0.247950	0.230000	0	0.190000	0.290000
RRP8	23378	broad.mit.edu	37	11	6622389	6622389	+	Missense_Mutation	SNP	G	G	T			TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr11:6622389G>T	ENST00000254605.6	-	3	1024	c.907C>A	c.(907-909)Ctt>Att	p.L303I	RRP8_ENST00000534343.1_Intron|ILK_ENST00000420936.2_5'Flank|ILK_ENST00000537806.1_5'Flank|RP11-732A19.8_ENST00000527191.1_RNA|ILK_ENST00000396751.2_5'Flank|ILK_ENST00000299421.4_5'Flank|ILK_ENST00000528995.1_5'Flank	NM_015324.3	NP_056139.1	O43159	RRP8_HUMAN	ribosomal RNA processing 8, methyltransferase, homolog (yeast)			13					CGCTGGCGAAGATCCCTGGCG	0.572000																								0							SO:0001583	missense			ENST00000254605.6	0	1	hg19	CCDS31411.1	.	.	.	.	.	.	.	.	.	.	G	15.120000	2.737955	0.490450	.	.	ENSG00000132275	ENST00000254605;ENST00000533907	T;T	0.53206	0.63;0.63	6.080000	4.990000	0.663350	.	0.059275	0.64402	D	0.000004	T	0.46151	0.1378	N	0.17922	0.545	0.807220	D	1.000000	B	0.26809	0.16	P	0.51918	0.684	T	0.37407	-0.9707	10	0.07644	T	0.81	-20.4274	9.775300	0.406140	0.0818:0.0:0.7743:0.144	.	303	O43159	RRP8_HUMAN	I	303	ENSP00000254605:L303I;ENSP00000436246:L303I	ENSP00000254605:L303I	L	-	1	0	RRP8	6578965	1	0.714170	1	0.803570	0.988000	0.763860	4.110000	0.578310	2.894000	0.992530	0.655000	0.942530	CTT		TCGA-F2-A44H-01A-11D-A26I-08	RRP8-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000384505.1	1	0	1	26	189	0	18	1	7.415646e-01	7	14	0	18	2		0	0	0	0	0	2	1	1.000000	26	186	0	18	2								-20.000000	1	1	0	0		1	0	1	1	1.800142	1	0.260000	1.820000	0.149425	0.780000	0.530000	0.980000	0.790000	0.781097	0.780000	0	0.650000	0.910000
FAT3	120114	broad.mit.edu	37	11	92569867	92569867	+	Missense_Mutation	SNP	C	C	T			TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr11:92569867C>T	ENST00000298047.6	+	15	10239	c.10222C>T	c.(10222-10224)Cgg>Tgg	p.R3408W	FAT3_ENST00000525166.1_Missense_Mutation_p.R3258W|FAT3_ENST00000409404.2_Missense_Mutation_p.R3408W			Q8TDW7	FAT3_HUMAN	FAT atypical cadherin 3			85		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)			GGACCGGGAACGGGTAAGCTA	0.438000										TCGA Ovarian(4;0.039)														0							SO:0001583	missense			ENST00000298047.6	1	0	hg19		.	.	.	.	.	.	.	.	.	.	C	17.880000	3.496552	0.641860	0.0	0.002555	ENSG00000165323	ENST00000298047;ENST00000409404;ENST00000525166	T;T;T	0.01804	4.63;4.63;4.63	5.090000	5.090000	0.689990	.	.	.	.	.	T	0.06371	0.0164	M	0.64404	1.975	0.807220	D	1.000000	D	0.71674	0.998	P	0.57009	0.811	T	0.05022	-1.0911	9	0.66056	D	0.02	.	13.097000	0.591970	0.1702:0.8298:0.0:0.0	.	3408	Q8TDW7-3	.	W	3408;3408;3258	ENSP00000298047:R3408W;ENSP00000387040:R3408W;ENSP00000432586:R3258W	ENSP00000298047:R3408W	R	+	1	2	FAT3	92209515	1	0.714170	1	0.803570	0.961000	0.630800	0.977000	0.294750	2.526000	0.851670	0.563000	0.778840	CGG		TCGA-F2-A44H-01A-11D-A26I-08	FAT3-201	KNOWN	basic	protein_coding	protein_coding		1	0	1	33	200	0	27		0	0	0	0	27	2		0	0	0	0	0	2	1	1.000000	33	199	0	27	2								-4.337061	1	1	120836	269	54	1	0	1	1	1.797776	1	0.260000	1.820000	0.151960	0.880000	0.650000	1.000000	1.000000	0.872276	0.880000	1	0.760000	0.980000
TBX3	6926	broad.mit.edu	37	12	115112388	115112388	+	Missense_Mutation	SNP	G	G	A			TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr12:115112388G>A	ENST00000257566.3	-	7	1741	c.1352C>T	c.(1351-1353)gCg>gTg	p.A451V	TBX3_ENST00000349155.2_Missense_Mutation_p.A431V	NM_016569.3	NP_057653.3	O15119	TBX3_HUMAN	T-box 3			47	Medulloblastoma(191;0.163)|all_neural(191;0.178)				GCGCTCCTCCGCGCCCAGGCC	0.751000																								0							SO:0001583	missense			ENST00000257566.3	0	1	hg19	CCDS9176.1	.	.	.	.	.	.	.	.	.	.	G	14.290000	2.490947	0.442490	.	.	ENSG00000135111	ENST00000349155;ENST00000257566;ENST00000361100	D;D	0.87103	-2.21;-2.2	5.140000	1.420000	0.224330	.	6.239900	0.01621	U	0.023007	T	0.75184	0.3815	N	0.22421	0.69	0.260060	N	0.982051	B;B	0.34349	0.45;0.043	B;B	0.23852	0.049;0.007	T	0.67094	-0.5757	10	0.17369	T	0.5	.	5.023400	0.143720	0.2845:0.2671:0.4484:0.0	.	431;451	O15119-2;O15119	.;TBX3_HUMAN	V	431;451;451	ENSP00000257567:A431V;ENSP00000257566:A451V	ENSP00000257566:A451V	A	-	2	0	TBX3	113596771	3.520000e-01	0.248950	7.490000e-01	0.311500	0.723000	0.414780	1.286000	0.332730	1.175000	0.428260	-0.191000	0.128290	GCG		TCGA-F2-A44H-01A-11D-A26I-08	TBX3-002	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000404947.2	0	0	0	6	65	0	10	0	2.861163e-02	0	3	0	10	2		0	0	0	0	0	2	1	0.965690	6	64	0	10	2								-13.977980	1	1	118710	1	23	1	0	0	0	2.011317	0	0.260000	1.820000	0.244281	0.650000	0.280000	1.000000	1.000000	0.673846	0.650000	0	0.440000	0.920000
MLF2	8079	broad.mit.edu	37	12	6858098	6858098	+	Missense_Mutation	SNP	G	G	A			TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08			G	A	G	G		Valid	Somatic	Phase_I	WXS	RNA			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr12:6858098G>A	ENST00000203630.5	-	8	1254	c.610C>T	c.(610-612)Cgg>Tgg	p.R204W	MLF2_ENST00000542154.1_Missense_Mutation_p.R204W|MLF2_ENST00000539187.1_Missense_Mutation_p.R204W|MLF2_ENST00000435120.1_Missense_Mutation_p.R204W|MLF2_ENST00000564181.1_5'Flank			Q15773	MLF2_HUMAN	myeloid leukemia factor 2			9					CGCTGCTGCCGGAATCGGGAG	0.687000																								0							SO:0001583	missense			ENST00000203630.5	0	1	hg19	CCDS8559.1	.	.	.	.	.	.	.	.	.	.	G	13.710000	2.316957	0.409960	.	.	ENSG00000089693	ENST00000435120;ENST00000203630;ENST00000542154;ENST00000539187	.	.	.	5.210000	2.180000	0.277750	.	0.153364	0.44688	D	0.000421	T	0.54127	0.1839	L	0.27053	0.805	0.497980	D	0.999828	D	0.89917	1.0	D	0.75020	0.985	T	0.53173	-0.8476	9	0.62326	D	0.03	.	7.905200	0.297570	0.0728:0.0:0.5051:0.4222	.	204	Q15773	MLF2_HUMAN	W	204	.	ENSP00000203630:R204W	R	-	1	2	MLF2	6728359	1	0.714170	9.890000e-01	0.466690	0.001000	0.015030	1.782000	0.386540	0.548000	0.289550	-0.218000	0.125430	CGG		TCGA-F2-A44H-01A-11D-A26I-08	MLF2-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000400733.2	1	0	1	16	153	0	22	1	9.999997e-01	50	247	0	22	2		0	0	0	0	0	2	1	0.999936	16	149	0	22	2								-19.999250	1	1	0	0		1	0	0	0	2.003992	0	0.260000	1.820000	0.242269	0.710000	0.430000	1.000000	1.000000	0.727124	0.710000	0	0.560000	0.890000
MYH7	4625	broad.mit.edu	37	14	23885302	23885302	+	Missense_Mutation	SNP	G	G	C			TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr14:23885302G>C	ENST00000355349.3	-	34	5026	c.4864C>G	c.(4864-4866)Ctc>Gtc	p.L1622V	MIR208B_ENST00000401172.1_RNA|CTD-2201G16.1_ENST00000557368.1_RNA	NM_000257.2	NP_000248.2	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta			137	all_cancers(95;2.54e-05)				ATCTCATTGAGGTCTCCTTCC	0.607000																								0							SO:0001583	missense			ENST00000355349.3	1	1	hg19	CCDS9601.1	.	.	.	.	.	.	.	.	.	.	G	17.520000	3.409563	0.623990	.	.	ENSG00000092054	ENST00000355349;ENST00000544444	T	0.79454	-1.27	4.550000	4.550000	0.560140	Myosin tail (1);	.	.	.	.	D	0.83843	0.5342	M	0.71206	2.165	0.503130	D	0.999869	P	0.40534	0.72	P	0.50162	0.633	D	0.85606	0.1255	9	0.59425	D	0.04	.	17.868200	0.888030	0.0:0.0:1.0:0.0	.	1622	P12883	MYH7_HUMAN	V	1622;1627	ENSP00000347507:L1622V	ENSP00000347507:L1622V	L	-	1	0	MYH7	22955142	1	0.714170	1	0.803570	0.989000	0.773840	7.165000	0.775440	2.537000	0.855490	0.655000	0.942530	CTC		TCGA-F2-A44H-01A-11D-A26I-08	MYH7-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000071798.3	1	0	1	94	707	0	68	0	0	0	1	0	68	2		0	0	0	0	0	2	1	1.000000	93	692	0	68	2								-3.221883	1	1	0	0		1	0	0	0	2.039838	0	0.260000	1.820000	0.256132	0.890000	0.730000	1.000000	1.000000	0.895792	0.890000	1	0.800000	0.990000
TRIM37	4591	broad.mit.edu	37	17	57158534	57158534	+	Missense_Mutation	SNP	T	T	A			TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr17:57158534T>A	ENST00000262294.7	-	6	675	c.416A>T	c.(415-417)cAc>cTc	p.H139L	TRIM37_ENST00000376149.3_Missense_Mutation_p.H17L|TRIM37_ENST00000393065.2_Missense_Mutation_p.H105L|TRIM37_ENST00000393066.3_Missense_Mutation_p.H139L	NM_015294.3	NP_056109.1	O94972	TRI37_HUMAN	tripartite motif containing 37			37	Medulloblastoma(34;0.0922)|all_neural(34;0.101)				TTTAGTGACGTGTTGCTCATA	0.373000									Mulibrey Nanism															0							SO:0001583	missense	Familial Cancer Database	Perheentupa syndrome	ENST00000262294.7	1	1	hg19	CCDS32694.1	.	.	.	.	.	.	.	.	.	.	T	31.000000	5.079159	0.940500	.	.	ENSG00000108395	ENST00000393066;ENST00000262294;ENST00000376149;ENST00000393065	T;T;T;T	0.68479	0.57;0.57;-0.33;0.57	5.620000	5.620000	0.858410	B-box, C-terminal (1);	0.000000	0.85682	D	0.000000	T	0.82185	0.4982	M	0.81682	2.555	0.807220	D	1.000000	D;D;B	0.89917	0.994;1.0;0.128	D;D;B	0.83275	0.949;0.996;0.138	D	0.84263	0.0484	10	0.59425	D	0.04	-21.7933	14.661300	0.688730	0.0:0.0:0.0:1.0	.	105;17;139	F8WEE6;O94972-2;O94972	.;.;TRI37_HUMAN	L	139;139;17;105	ENSP00000376785:H139L;ENSP00000262294:H139L;ENSP00000365319:H17L;ENSP00000376784:H105L	ENSP00000262294:H139L	H	-	2	0	TRIM37	54513316	1	0.714170	1	0.803570	0.974000	0.676020	7.864000	0.870370	2.150000	0.670900	0.528000	0.532280	CAC		TCGA-F2-A44H-01A-11D-A26I-08	TRIM37-002	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000445930.1	1	0	0	39	733	0	66	0	4.787797e-02	0	7	0	66	2		0	0	0	0	0	2	1	1.000000	39	727	0	66	2								-20.000000	1	1	0	0		1	1	2	3	2.049772	0	0.260000	1.820000	0.260961	0.380000	0.270000	0.530000	0.390000	0.396593	0.380000	0	0.330000	0.460000
C18orf25	147339	broad.mit.edu	37	18	43833700	43833700	+	Silent	SNP	A	A	T	rs141322867	by1000genomes	TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr18:43833700A>T	ENST00000282059.6	+	4	1310	c.936A>T	c.(934-936)acA>acT	p.T312T	C18orf25_ENST00000321319.6_Silent_p.T251T	NM_145055.3	NP_659492	Q96B23	CR025_HUMAN	chromosome 18 open reading frame 25			11					GTGACAAAACATCTGGCAATG	0.398000																								0							SO:0001819	synonymous_variant			ENST00000282059.6	1	0	hg19	CCDS42430.1																																																																																				TCGA-F2-A44H-01A-11D-A26I-08	C18orf25-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000445242.1	1	0	1	133	589	0	61	0	3.446371e-02	0	2	0	61	2		0	0	0	0	0	2	1	1.000000	135	590	0	61	2								-3.213718	1	1	0	0		1	0	1	1	1.772900	1	0.260000	1.820000	0.149425	0.970000	0.900000	1.000000	0.990000	0.976506	0.970000	1	0.940000	1.000000
ALPK2	115701	broad.mit.edu	37	18	56274646	56274646	+	Nonsense_Mutation	SNP	C	C	T			TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr18:56274646C>T	ENST00000361673.3	-	3	348	c.135G>A	c.(133-135)tgG>tgA	p.W45*		NM_052947.3	NP_443179.3	Q86TB3	ALPK2_HUMAN	alpha-kinase 2			84					CATTCTTATACCAAGTTACCT	0.348000																								0							SO:0001587	stop_gained			ENST00000361673.3	0	1	hg19	CCDS11966.2	.	.	.	.	.	.	.	.	.	.	C	39.000000	7.294979	0.981920	.	.	ENSG00000198796	ENST00000361673	.	.	.	5.900000	5.900000	0.949860	.	.	.	.	.	.	.	.	.	.	.	0.807220	A	1.000000	.	.	.	.	.	.	.	.	.	.	0.02654	T	1	-1.1281	17.187200	0.868690	0.0:1.0:0.0:0.0	.	.	.	.	X	45	.	ENSP00000354991:W45X	W	-	3	0	ALPK2	54425626	1	0.714170	1	0.803570	0.994000	0.842990	3.818000	0.556780	2.793000	0.961210	0.591000	0.815410	TGG		TCGA-F2-A44H-01A-11D-A26I-08	ALPK2-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000256126.1	1	0	0	38	225	0	18		0	0	0	0	18	2		0	0	0	0	0	2	1	1.000000	38	222	0	18	2								-20.000000	1	1	0	0		1	0	1	1	1.772900	1	0.260000	1.820000	0.149425	0.880000	0.670000	1.000000	0.950000	0.876745	0.880000	1	0.780000	0.970000
BST2	684	broad.mit.edu	37	19	17515193	17515193	+	Silent	SNP	C	C	A			TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08			C	A	C	C		Valid	Somatic	Phase_I	WXS	RNA			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr19:17515193C>A	ENST00000252593.6	-	2	411	c.339G>T	c.(337-339)gtG>gtT	p.V113V	BST2_ENST00000527220.1_Intron|CTD-2521M24.9_ENST00000500836.2_lincRNA	NM_004335.2	NP_004326.1	Q10589	BST2_HUMAN	bone marrow stromal cell antigen 2			9					CAAGCTCCTCCACTTTCTTTT	0.582000																								0							SO:0001819	synonymous_variant			ENST00000252593.6	1	1	hg19	CCDS12358.1																																																																																				TCGA-F2-A44H-01A-11D-A26I-08	BST2-001	KNOWN	basic|appris_principal|exp_conf|CCDS	protein_coding	protein_coding	OTTHUMT00000387346.1	1	0	1	91	732	0	92	1	1	6	224	0	92	2		0	0	0	0	0	2	1	1.000000	89	726	0	92	2								-3.318794	1	1	0	0		1	0	1	1	2.039936	0	0.260000	1.820000	0.258071	0.840000	0.680000	1.000000	1.000000	0.850890	0.840000	0	0.760000	0.930000
SLC8A2	6543	broad.mit.edu	37	19	47968987	47968987	+	Splice_Site	SNP	T	T	C			TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr19:47968987T>C	ENST00000236877.6	-	2	1069	c.674A>G	c.(673-675)cAg>cGg	p.Q225R	SLC8A2_ENST00000542837.1_Intron|SLC8A2_ENST00000539381.1_Intron	NM_015063.2	NP_055878.1	Q9UPR5	NAC2_HUMAN	solute carrier family 8 (sodium/calcium exchanger), member 2			31		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)			TTTGCTCACCTGGACCACACC	0.478000																								0							SO:0001630	splice_region_variant			ENST00000236877.6	0	1	hg19	CCDS33065.1	.	.	.	.	.	.	.	.	.	.	T	12.990000	2.103832	0.371450	.	.	ENSG00000118160	ENST00000391903;ENST00000236877	T	0.62639	0.01	4.160000	4.160000	0.488620	Sodium/calcium exchanger membrane region (1);	0.066208	0.64402	D	0.000012	T	0.55353	0.1915	L	0.39898	1.24	0.807220	D	1.000000	P;P	0.43826	0.818;0.801	P;B	0.44561	0.453;0.438	T	0.60429	-0.7265	10	0.87932	D	0	.	9.536800	0.392260	0.0:0.0:0.0:1.0	.	53;225	E9PGS7;Q9UPR5	.;NAC2_HUMAN	R	53;225	ENSP00000236877:Q225R	ENSP00000236877:Q225R	Q	-	2	0	SLC8A2	52660799	1	0.714170	1	0.803570	0.379000	0.301060	6.954000	0.760010	1.758000	0.519810	0.454000	0.307480	CAG		TCGA-F2-A44H-01A-11D-A26I-08	SLC8A2-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000466997.1	0	0	0	6	99	0	14	0	0	0	1	0	14	2		0	0	0	0	0	2	1	0.964338	6	97	0	14	2								-10.190810	1	1	0	0		1	0	1	1	2.040873	0	0.260000	1.820000	0.258071	0.460000	0.190000	0.850000	0.430000	0.487537	0.460000	0	0.300000	0.650000
LILRA6	79168	broad.mit.edu	37	19	54744909	54744909	+	Silent	SNP	G	G	A			TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr19:54744909G>A	ENST00000396365.2	-	5	792	c.753C>T	c.(751-753)taC>taT	p.Y251Y	LILRA6_ENST00000440558.2_Silent_p.Y251Y|LILRA6_ENST00000391735.3_3'UTR|LILRA6_ENST00000270464.5_Intron|LILRA6_ENST00000245621.5_Silent_p.Y251Y|LILRA6_ENST00000419410.2_Silent_p.Y251Y|LILRB3_ENST00000407860.2_Intron	NM_024318.2	NP_077294	Q6PI73	LIRA6_HUMAN	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6			38	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)				CAAATCTGTCGTAGCCGACAT	0.652000																								0							SO:0001819	synonymous_variant			ENST00000396365.2	1	1	hg19	CCDS42610.1																																																																																				TCGA-F2-A44H-01A-11D-A26I-08	LILRA6-003	NOVEL	basic|appris_candidate|CCDS	protein_coding	protein_coding	OTTHUMT00000313725.1	0	0	0	53	953	1	122	0	8.098397e-02	0	9	1	122	2		0	0	0	0	0	2	1	0.999433	54	925	1	123	25								-6.375130	1	1	121412	1	43	1	1	2	3	2.059402	0	0.260000	1.820000	0.263828	0.400000	0.300000	1.000000	0.410000	0.429978	0.400000	0	0.350000	0.470000
SORT1	6272	broad.mit.edu	37	1	109883487	109883487	+	Missense_Mutation	SNP	T	T	C			TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr1:109883487T>C	ENST00000256637.6	-	10	1181	c.1123A>G	c.(1123-1125)Aca>Gca	p.T375A	SORT1_ENST00000538502.1_Missense_Mutation_p.T238A	NM_002959.5	NP_002950.3	Q99523	SORT_HUMAN	sortilin 1			26		all_epithelial(167;4.69e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)			GTAAAGATTGTGCCAAACCCA	0.443000																								0							SO:0001583	missense			ENST00000256637.6	1	1	hg19	CCDS798.1	.	.	.	.	.	.	.	.	.	.	t	17.760000	3.469461	0.636250	.	.	ENSG00000134243	ENST00000256637;ENST00000538502	T;T	0.28454	1.61;1.61	5.690000	5.690000	0.884480	VPS10 (1);	0.101437	0.64402	D	0.000003	T	0.23532	0.0569	L	0.43757	1.38	0.584320	D	0.999999	B;P	0.43352	0.434;0.804	B;P	0.47102	0.148;0.537	T	0.01557	-1.1325	10	0.36615	T	0.2	-10.6008	14.923000	0.708540	0.0:0.0:0.0:1.0	.	238;375	B4DWI3;Q99523	.;SORT_HUMAN	A	375;238	ENSP00000256637:T375A;ENSP00000438597:T238A	ENSP00000256637:T375A	T	-	1	0	SORT1	109685010	1	0.714170	1	0.803570	0.995000	0.863560	7.820000	0.866330	2.170000	0.685040	0.529000	0.557590	ACA		TCGA-F2-A44H-01A-11D-A26I-08	SORT1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000033179.1	1	0	1	45	231	0	31	1	9.576930e-01	3	26	0	31	2		0	0	0	0	0	2	1	1.000000	45	231	0	31	2								-19.999700	1	1	0	0		1	0	1	1	1.805362	1	0.260000	1.820000	0.155733	0.960000	0.770000	1.000000	1.000000	0.946102	0.960000	1	0.870000	1.000000
FLRT3	23767	broad.mit.edu	37	20	14307019	14307019	+	Silent	SNP	T	T	C	rs36034779	byFrequency	TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr20:14307019T>C	ENST00000378053.3	-	2	1390	c.1134A>G	c.(1132-1134)caA>caG	p.Q378Q	MACROD2_ENST00000310348.4_Intron|FLRT3_ENST00000462077.1_5'Flank|MACROD2_ENST00000217246.4_Intron|FLRT3_ENST00000341420.4_Silent_p.Q378Q	NM_013281.3	NP_037413.1	Q9NZU0	FLRT3_HUMAN	fibronectin leucine rich transmembrane protein 3			17		Colorectal(1;0.0464)	COAD - Colon adenocarcinoma(2;0.129)		GCCACTGTCCTTGGGCAGGAT	0.453000																								0							SO:0001819	synonymous_variant			ENST00000378053.3	1	0	hg19	CCDS13121.1																																																																																				TCGA-F2-A44H-01A-11D-A26I-08	FLRT3-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000078075.1	1	0	0	69	1130	0	89	0	3.437054e-03	0	2	0	89	2		0	0	0	0	0	2	1	1.000000	69	1124	0	88	2								-9.193671	1	1	0	0		1	0	1	1	2.044880	0	0.260000	1.820000	0.258071	0.430000	0.340000	0.550000	0.440000	0.446106	0.430000	0	0.380000	0.500000
MCM3AP	8888	broad.mit.edu	37	21	47704430	47704430	+	Silent	SNP	C	C	T			TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr21:47704430C>T	ENST00000397708.1	-	2	1025	c.771G>A	c.(769-771)gcG>gcA	p.A257A	YBEY_ENST00000397691.1_5'Flank|YBEY_ENST00000397701.4_5'Flank|YBEY_ENST00000329319.3_5'Flank|MCM3AP_ENST00000291688.1_Silent_p.A257A|YBEY_ENST00000397692.1_5'Flank|YBEY_ENST00000339195.6_5'Flank|YBEY_ENST00000397694.1_5'Flank			O60318	GANP_HUMAN	minichromosome maintenance complex component 3 associated protein			72	Breast(49;0.112)				CGCCCAAAACCGCAGATGATA	0.468000																								0							SO:0001819	synonymous_variant			ENST00000397708.1	1	1	hg19	CCDS13734.1																																																																																				TCGA-F2-A44H-01A-11D-A26I-08	MCM3AP-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000207254.1	1	0	1	94	676	0	74	1	5.997189e-01	3	13	0	74	2		0	0	0	0	0	2	1	1.000000	92	669	0	74	2								-2.716734	1	1	0	0		1	0	1	1	2.042870	0	0.260000	1.820000	0.258071	0.930000	0.760000	1.000000	1.000000	0.926172	0.930000	1	0.840000	1.000000
C2orf71	388939	broad.mit.edu	37	2	29295765	29295765	+	Missense_Mutation	SNP	G	G	T			TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr2:29295765G>T	ENST00000331664.5	-	1	1362	c.1363C>A	c.(1363-1365)Cca>Aca	p.P455T		NM_001029883.2	NP_001025054.1	A6NGG8	CB071_HUMAN	chromosome 2 open reading frame 71			60					GAATCACATGGGGTGCTTGTC	0.552000																								0							SO:0001583	missense			ENST00000331664.5	1	1	hg19	CCDS42669.1	.	.	.	.	.	.	.	.	.	.	G	9.104000	1.004923	0.191990	.	.	ENSG00000179270	ENST00000331664	T	0.19394	2.15	5.300000	-3.700000	0.044370	.	1.678270	0.03044	N	0.153697	T	0.18800	0.0451	L	0.56769	1.78	0.093100	N	1.000000	P	0.38370	0.628	B	0.34489	0.184	T	0.29912	-0.9996	10	0.33940	T	0.23	3.0531	6.309000	0.211540	0.4479:0.3978:0.1543:0.0	.	455	A6NGG8	CB071_HUMAN	T	455	ENSP00000332809:P455T	ENSP00000332809:P455T	P	-	1	0	C2orf71	29149269	0	0.058580	0	0.037020	0.003000	0.035180	-0.083000	0.112860	-0.583000	0.059210	0.561000	0.740990	CCA		TCGA-F2-A44H-01A-11D-A26I-08	C2orf71-001	KNOWN	basic|appris_principal|exp_conf|CCDS	protein_coding	protein_coding	OTTHUMT00000324924.3	1	0	0	28	483	0	57		0	0	0	0	57	2		0	0	0	0	0	2	1	1.000000	28	479	0	56	2								-2.665703	1	1	0	0		1	0	0	0	2.037145	0	0.260000	1.820000	0.256132	0.410000	0.280000	0.580000	0.420000	0.430132	0.410000	0	0.340000	0.500000
APLF	200558	broad.mit.edu	37	2	68729986	68729986	+	Missense_Mutation	SNP	T	T	A			TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr2:68729986T>A	ENST00000303795.4	+	3	463	c.292T>A	c.(292-294)Ttc>Atc	p.F98I		NM_173545.2	NP_775816.1	Q8IW19	APLF_HUMAN	aprataxin and PNKP like factor			25					CAAATACATTTTCCGCATTCT	0.373000																								0							SO:0001583	missense			ENST00000303795.4	1	1	hg19	CCDS1888.1	.	.	.	.	.	.	.	.	.	.	t	15.350000	2.807837	0.504210	.	.	ENSG00000169621	ENST00000303795	T	0.27104	1.69	5.220000	5.220000	0.725690	SMAD/FHA domain (1);	0.053905	0.64402	D	0.000001	T	0.53449	0.1797	M	0.83603	2.65	0.444320	D	0.997351	D;D	0.89917	1.0;0.999	D;D	0.87578	0.998;0.994	T	0.60136	-0.7322	10	0.87932	D	0	.	12.924000	0.582490	0.0:0.0:0.0:1.0	.	98;98	F8WET0;Q8IW19	.;APLF_HUMAN	I	98	ENSP00000307004:F98I	ENSP00000307004:F98I	F	+	1	0	APLF	68583490	9.820000e-01	0.348650	4.240000e-01	0.266470	0.007000	0.059690	4.205000	0.584660	2.091000	0.632210	0.533000	0.621200	TTC		TCGA-F2-A44H-01A-11D-A26I-08	APLF-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000251759.1	1	0	1	126	789	0	60	0	1.972041e-01	1	5	0	60	2		0	0	0	0	0	2	1	1.000000	125	786	0	60	2								-20.000000	1	1	0	0		1	0	0	0	2.037145	0	0.260000	1.820000	0.256132	0.990000	0.880000	1.000000	1.000000	0.986810	0.990000	1	0.960000	1.000000
AGGF1	55109	broad.mit.edu	37	5	76349893	76349893	+	Missense_Mutation	SNP	A	A	T			TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr5:76349893A>T	ENST00000312916.7	+	10	1953	c.1571A>T	c.(1570-1572)gAt>gTt	p.D524V		NM_018046.4	NP_060516.2	Q8N302	AGGF1_HUMAN	angiogenic factor with G patch and FHA domains 1			20		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)			GATACCTGTGATGGCTGTGAA	0.408000																								0							SO:0001583	missense			ENST00000312916.7	1	1	hg19	CCDS4035.1	.	.	.	.	.	.	.	.	.	.	A	17.030000	3.284157	0.598670	.	.	ENSG00000164252	ENST00000312916	T	0.40476	1.03	5.020000	5.020000	0.671250	Forkhead-associated (FHA) domain (1);	0.000000	0.85682	D	0.000000	T	0.40619	0.1124	L	0.56769	1.78	0.807220	D	1.000000	P	0.38617	0.64	B	0.34779	0.189	T	0.46345	-0.9198	10	0.72032	D	0.01	-0.0151	14.749800	0.695160	1.0:0.0:0.0:0.0	.	524	Q8N302	AGGF1_HUMAN	V	524	ENSP00000316109:D524V	ENSP00000316109:D524V	D	+	2	0	AGGF1	76385649	1	0.714170	1	0.803570	0.995000	0.863560	9.271000	0.956980	1.883000	0.545440	0.379000	0.241790	GAT		TCGA-F2-A44H-01A-11D-A26I-08	AGGF1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000219971.2	1	0	0	59	654	0	73	0	5.822350e-01	0	23	0	73	2		0	0	0	0	0	2	1	1.000000	59	646	0	72	2								-20.000000	1	1	0	0		1	1	2	3	2.054723	0	0.260000	1.820000	0.261919	0.630000	0.490000	0.830000	0.630000	0.648112	0.630000	0	0.560000	0.730000
SYNE1	23345	broad.mit.edu	37	6	152651474	152651474	+	Silent	SNP	T	T	C			TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr6:152651474T>C	ENST00000367255.5	-	78	14947	c.14346A>G	c.(14344-14346)gaA>gaG	p.E4782E	SYNE1_ENST00000341594.5_Silent_p.E4529E|SYNE1_ENST00000265368.4_Silent_p.E4782E|SYNE1_ENST00000448038.1_Silent_p.E4711E|SYNE1_ENST00000423061.1_Silent_p.E4711E	NM_182961.3	NP_892006.3	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1			524		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)		TCTTCTCGTGTTCTTGGTAAG	0.478000										HNSCC(10;0.0054)														0							SO:0001819	synonymous_variant			ENST00000367255.5	0	1	hg19	CCDS5236.2																																																																																				TCGA-F2-A44H-01A-11D-A26I-08	SYNE1-001	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000334755.2	1	0	0	14	304	0	18	0	0	0	1	0	18	2		0	0	0	0	0	2	1	0.999755	14	301	0	18	2								-15.561270	1	1	0	0		1	0	1	1	1.793106	1	0.260000	1.820000	0.150694	0.290000	0.160000	0.460000	0.290000	0.308619	0.290000	0	0.220000	0.380000
ELMO1	9844	broad.mit.edu	37	7	37354484	37354484	+	Silent	SNP	G	G	A			TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr7:37354484G>A	ENST00000310758.4	-	4	809	c.162C>T	c.(160-162)gcC>gcT	p.A54A	ELMO1_ENST00000442504.1_Silent_p.A54A|ELMO1_ENST00000448602.1_Silent_p.A54A	NM_001206480.1|NM_014800.10	NP_001193409.1|NP_055615.8	Q92556	ELMO1_HUMAN	engulfment and cell motility 1			58					TTGAACTATCGGCATGCTGGA	0.328000																								0							SO:0001819	synonymous_variant			ENST00000310758.4	0	1	hg19	CCDS5449.1																																																																																				TCGA-F2-A44H-01A-11D-A26I-08	ELMO1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000219830.4	1	0	0	15	173	0	10	0	2.108019e-02	0	3	0	10	2		0	0	0	0	0	2	1	0.999879	15	170	0	10	2								-2.841682	1	1	121412	18	43	1	1	2	3	2.054742	0	0.260000	1.820000	0.261919	0.620000	0.360000	1.000000	0.610000	0.642075	0.620000	0	0.480000	0.800000
ASH2L	9070	broad.mit.edu	37	8	37974234	37974234	+	Missense_Mutation	SNP	A	A	T			TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr8:37974234A>T	ENST00000343823.6	+	8	1153	c.844A>T	c.(844-846)Aat>Tat	p.N282Y	ASH2L_ENST00000524263.1_3'UTR|ASH2L_ENST00000428278.2_Missense_Mutation_p.N188Y|ASH2L_ENST00000545394.1_Missense_Mutation_p.N143Y|ASH2L_ENST00000250635.7_Missense_Mutation_p.N188Y|ASH2L_ENST00000521652.1_Missense_Mutation_p.N188Y	NM_004674.4	NP_004665.2	Q9UBL3	ASH2L_HUMAN	ash2 (absent, small, or homeotic)-like (Drosophila)			19	Colorectal(12;0.000501)	Lung NSC(58;0.0295)|all_lung(54;0.0413)			TACTAGTGGGAATTTAAATGG	0.378000																								0							SO:0001583	missense			ENST00000343823.6	1	1	hg19	CCDS6101.1	.	.	.	.	.	.	.	.	.	.	A	16.040000	3.009607	0.543610	.	.	ENSG00000129691	ENST00000343823;ENST00000250635;ENST00000545394;ENST00000428278;ENST00000521652	T;T;T;T;T	0.22539	1.95;1.95;1.95;1.95;1.95	5.790000	5.790000	0.918170	.	0.088769	0.85682	D	0.000000	T	0.12347	0.0300	N	0.03608	-0.345	0.467740	D	0.999190	B;P	0.47350	0.001;0.894	B;B	0.41723	0.001;0.365	T	0.17107	-1.0380	10	0.59425	D	0.04	.	16.119300	0.813360	1.0:0.0:0.0:0.0	.	188;282	Q9UBL3-2;Q9UBL3	.;ASH2L_HUMAN	Y	282;188;143;188;188	ENSP00000340896:N282Y;ENSP00000250635:N188Y;ENSP00000443606:N143Y;ENSP00000395310:N188Y;ENSP00000430259:N188Y	ENSP00000250635:N188Y	N	+	1	0	ASH2L	38093391	1	0.714170	1	0.803570	0.963000	0.636630	5.057000	0.642940	2.201000	0.707940	0.533000	0.621200	AAT		TCGA-F2-A44H-01A-11D-A26I-08	ASH2L-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000376749.4	1	0	0	30	310	0	25	1	7.705493e-01	5	26	0	25	2		0	0	0	0	0	2	1	1.000000	30	308	0	24	2								-20.000000	1	1	0	0		1	1	2	3	2.056714	0	0.260000	1.820000	0.261919	0.680000	0.470000	0.970000	0.670000	0.695840	0.680000	0	0.570000	0.820000
PXDNL	137902	broad.mit.edu	37	8	52321508	52321508	+	Silent	SNP	G	G	C			TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr8:52321508G>C	ENST00000356297.4	-	17	2776	c.2676C>G	c.(2674-2676)gcC>gcG	p.A892A	PXDNL_ENST00000543296.1_Silent_p.A892A	NM_144651.4	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog (Drosophila)-like			48		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)			CATCGATGTAGGCTGTTTGCT	0.617000																								0							SO:0001819	synonymous_variant			ENST00000356297.4	1	1	hg19	CCDS47855.1	.	.	.	.	.	.	.	.	.	.	G	0.661000	-0.805621	0.028190	.	.	ENSG00000147485	ENST00000522933	.	.	.	4.170000	-1.270000	0.093470	.	.	.	.	.	T	0.42539	0.1207	.	.	.	0.807220	D	1.000000	.	.	.	.	.	.	T	0.21449	-1.0245	4	.	.	.	.	3.398700	0.073150	0.3694:0.0:0.3804:0.2502	.	.	.	.	R	11	.	.	P	-	2	0	PXDNL	52484061	0	0.058580	3.000000e-03	0.115790	0.009000	0.068530	-3.594000	0.004200	-0.767000	0.046330	0.655000	0.942530	CCT		TCGA-F2-A44H-01A-11D-A26I-08	PXDNL-002	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000377905.1	1	0	0	34	317	0	53		0	0	0	0	53	2		0	0	0	0	0	2	1	1.000000	34	315	0	53	2								-20.000000	1	0	0	0		1	1	2	3	2.056714	0	0.260000	1.820000	0.261919	0.740000	0.530000	1.000000	1.000000	0.759196	0.740000	0	0.630000	0.880000
ZNF484	83744	broad.mit.edu	37	9	95610736	95610736	+	Silent	SNP	T	T	C			TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chr9:95610736T>C	ENST00000375495.3	-	5	481	c.333A>G	c.(331-333)ccA>ccG	p.P111P	ANKRD19P_ENST00000473204.1_RNA|ZNF484_ENST00000395505.2_Silent_p.P75P|ZNF484_ENST00000332591.6_Silent_p.P75P|ZNF484_ENST00000395506.3_Silent_p.P113P	NM_031486.2	NP_113674.1	Q5JVG2	ZN484_HUMAN	zinc finger protein 484			33					AAATGGAATATGGGTCATCTC	0.363000																								0							SO:0001819	synonymous_variant			ENST00000375495.3	1	1	hg19	CCDS35066.1																																																																																				TCGA-F2-A44H-01A-11D-A26I-08	ZNF484-001	KNOWN	basic|appris_candidate|CCDS	protein_coding	protein_coding	OTTHUMT00000053111.2	1	0	1	95	506	0	32		0	0	0	0	32	2		0	0	0	0	0	2	1	1.000000	95	502	0	30	2								-20.000000	1	1	0	0		1	0	1	1	1.798577	1	0.260000	1.820000	0.154479	0.970000	0.840000	1.000000	1.000000	0.964709	0.970000	1	0.910000	1.000000
RBM10	8241	broad.mit.edu	37	X	47045114	47045114	+	Splice_Site	SNP	G	G	C			TCGA-F2-A44H-01A-11D-A26I-08	TCGA-F2-A44H-10A-01D-A26I-08			G	C	G	G		Valid	Somatic	Phase_I	WXS	targeted			Illumina GAIIx	b059c399-13e4-4524-9505-49b477983cfa	bc622231-2dda-44dc-b430-9f4738960c07	g.chrX:47045114G>C	ENST00000377604.3	+	21	3097		c.e21-1		RBM10_ENST00000329236.7_Splice_Site|RBM10_ENST00000345781.6_Splice_Site	NM_001204467.1|NM_001204468.1|NM_005676.4	NP_001191396.1|NP_001191397.1|NP_005667.2	P98175	RBM10_HUMAN	RNA binding motif protein 10			48					CCCTCTTGCAGCAAAACCTTG	0.562000													Melanoma(171;120 2705 19495 39241)											0							SO:0001630	splice_region_variant			ENST00000377604.3	1	1	hg19	CCDS14274.1	.	.	.	.	.	.	.	.	.	.	G	16.050000	3.012815	0.544680	.	.	ENSG00000182872	ENST00000377604;ENST00000329236;ENST00000345781	.	.	.	5.130000	5.130000	0.700590	.	.	.	.	.	.	.	.	.	.	.	0.807220	D	1.000000	.	.	.	.	.	.	.	.	.	.	.	.	.	.	15.275900	0.737420	0.0:0.0:1.0:0.0	.	.	.	.	.	-1	.	.	.	+	.	.	RBM10	46930058	1	0.714170	1	0.803570	0.917000	0.548040	9.496000	0.979670	2.285000	0.766690	0.529000	0.557590	.		TCGA-F2-A44H-01A-11D-A26I-08	RBM10-005	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000056381.1	1	0	1	15	54	0	13	1	7.677208e-01	10	2	0	13	2	1	1	87	279	0	300	2	1	0.999927	15	53	0	13	2								-12.784080	1	1	0	0		1	0	1	1			0.260000	1.820000	0.260000	0.770000	0.490000	0.980000	0.810000	0.774076	0.770000	0	0.620000	0.920000
