Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	ACHILLES_Lineage_Results_Top_Genes	CGC_CancerGermlineMut	CGC_CancerMolecularGenetics	CGC_CancerSomaticMut	CGC_CancerSyndrome	CGC_Chr	CGC_ChrBand	CGC_GeneID	CGC_Name	CGC_OtherGermlineMut	CGC_TissueType	COSMIC_n_overlapping_mutations	COSMIC_overlapping_mutation_descriptions	ClinVar_ASSEMBLY	ClinVar_HGMD_ID	ClinVar_SYM	ClinVar_TYPE	ClinVar_rs	Ensembl_so_accession	Ensembl_so_term	Familial_Cancer_Genes_Reference	Familial_Cancer_Genes_Synonym	annotation_transcript	bcgsc	broad	build	ccds_id	dbNSFP_1000Gp1_AC	dbNSFP_1000Gp1_AF	dbNSFP_1000Gp1_AFR_AC	dbNSFP_1000Gp1_AFR_AF	dbNSFP_1000Gp1_AMR_AC	dbNSFP_1000Gp1_AMR_AF	dbNSFP_1000Gp1_ASN_AC	dbNSFP_1000Gp1_ASN_AF	dbNSFP_1000Gp1_EUR_AC	dbNSFP_1000Gp1_EUR_AF	dbNSFP_Ancestral_allele	dbNSFP_CADD_phred	dbNSFP_CADD_raw	dbNSFP_CADD_raw_rankscore	dbNSFP_ESP6500_AA_AF	dbNSFP_ESP6500_EA_AF	dbNSFP_Ensembl_geneid	dbNSFP_Ensembl_transcriptid	dbNSFP_FATHMM_pred	dbNSFP_FATHMM_rankscore	dbNSFP_FATHMM_score	dbNSFP_GERP_NR	dbNSFP_GERP_RS	dbNSFP_GERP_RS_rankscore	dbNSFP_Interpro_domain	dbNSFP_LRT_Omega	dbNSFP_LRT_converted_rankscore	dbNSFP_LRT_pred	dbNSFP_LRT_score	dbNSFP_LR_pred	dbNSFP_LR_rankscore	dbNSFP_LR_score	dbNSFP_MutationAssessor_pred	dbNSFP_MutationAssessor_rankscore	dbNSFP_MutationAssessor_score	dbNSFP_MutationTaster_converted_rankscore	dbNSFP_MutationTaster_pred	dbNSFP_MutationTaster_score	dbNSFP_Polyphen2_HDIV_pred	dbNSFP_Polyphen2_HDIV_rankscore	dbNSFP_Polyphen2_HDIV_score	dbNSFP_Polyphen2_HVAR_pred	dbNSFP_Polyphen2_HVAR_rankscore	dbNSFP_Polyphen2_HVAR_score	dbNSFP_RadialSVM_pred	dbNSFP_RadialSVM_rankscore	dbNSFP_RadialSVM_score	dbNSFP_Reliability_index	dbNSFP_SIFT_converted_rankscore	dbNSFP_SIFT_pred	dbNSFP_SIFT_score	dbNSFP_SLR_test_statistic	dbNSFP_SiPhy_29way_logOdds	dbNSFP_SiPhy_29way_logOdds_rankscore	dbNSFP_SiPhy_29way_pi	dbNSFP_UniSNP_ids	dbNSFP_Uniprot_aapos	dbNSFP_Uniprot_acc	dbNSFP_Uniprot_id	dbNSFP_aaalt	dbNSFP_aapos	dbNSFP_aapos_FATHMM	dbNSFP_aapos_SIFT	dbNSFP_aaref	dbNSFP_cds_strand	dbNSFP_codonpos	dbNSFP_folddegenerate	dbNSFP_genename	dbNSFP_hg18_pos1coor	dbNSFP_phastCons100way_vertebrate	dbNSFP_phastCons100way_vertebrate_rankscore	dbNSFP_phastCons46way_placental	dbNSFP_phastCons46way_placental_rankscore	dbNSFP_phastCons46way_primate	dbNSFP_phastCons46way_primate_rankscore	dbNSFP_phyloP100way_vertebrate	dbNSFP_phyloP100way_vertebrate_rankscore	dbNSFP_phyloP46way_placental	dbNSFP_phyloP46way_placental_rankscore	dbNSFP_phyloP46way_primate	dbNSFP_phyloP46way_primate_rankscore	dbNSFP_refcodon	entrez_gene_id	external_id_capture	gencode_transcript_name	gencode_transcript_status	gencode_transcript_tags	gencode_transcript_type	gene_type	havana_transcript	hgsc	igv_bad	ucsc	t_alt_count	t_ref_count	n_alt_count	n_ref_count	validation_judgement_rna	validation_power_rna	validation_tumor_alt_count_rna	validation_tumor_ref_count_rna	validation_normal_alt_count_rna	validation_normal_ref_count_rna	min_val_count_rna	validation_judgement_targeted	validation_power_targeted	validation_tumor_alt_count_targeted	validation_tumor_ref_count_targeted	validation_normal_alt_count_targeted	validation_normal_ref_count_targeted	min_val_count_targeted	validation_judgement_localAssembly	validation_power_localAssembly	t_alt_count_localAssembly	t_ref_count_localAssembly	n_alt_count_localAssembly	n_ref_count_localAssembly	min_val_count_localAssembly	validation_judgement_KRAS	validation_power_KRAS	t_alt_count_KRAS	t_ref_count_KRAS	n_alt_count_KRAS	n_ref_count_KRAS	min_val_count_KRAS	pon_loglike	pon_pass_loglike	localAssembly_detected	ExAC_AN	ExAC_AC	ExAC_LQ	passExAC	SCNA_NA	SCNA_NB	SCNA_q_hat	SCNA_tau	IS_SCNA	purity	ploidy	dna_fraction_in_tumor	CCF_hat	CCF_CI95_low	CCF_CI95_high	CCF_mode	CCF_mean	CCF_median	clonal	CCF_CI_low	CCF_CI_high
CDKN2A	1029	broad.mit.edu	37	9	21971063	21971068	+	In_Frame_Del	DEL	GGTGCA	GGTGCA	-	rs34886500		TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08			GGTGCA	-	GGTGCA	GGTGCA		Valid	Somatic	Phase_I	WXS	targeted			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr9:21971063_21971068delGGTGCA	ENST00000304494.5	-	2	560_565	c.290_295delTGCACC	c.(289-297)ctgcaccgg>cgg	p.LH97del	CDKN2A_ENST00000530628.2_In_Frame_Del_p.AP112del|CDKN2A_ENST00000498124.1_In_Frame_Del_p.LH97del|CDKN2A_ENST00000579755.1_In_Frame_Del_p.AP112del|CDKN2A_ENST00000494262.1_In_Frame_Del_p.LH46del|CDKN2A_ENST00000497750.1_In_Frame_Del_p.LH46del|CDKN2A_ENST00000578845.2_In_Frame_Del_p.LH46del|CDKN2A_ENST00000446177.1_In_Frame_Del_p.LH97del|CDKN2A_ENST00000361570.3_In_Frame_Del_p.AP153del|CDKN2A_ENST00000498628.2_In_Frame_Del_p.LH46del|CDKN2A_ENST00000579122.1_In_Frame_Del_p.LH97del|RP11-145E5.5_ENST00000404796.2_Intron|CDKN2A_ENST00000479692.2_In_Frame_Del_p.LH46del	NM_000077.4	NP_000068.1	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A	p.0?(1315)|p.?(44)|p.L97R(5)|p.L97P(4)|p.H98P(3)|p.H98R(2)|p.H83fs*2(2)|p.R99W(2)|p.H98Y(1)|p.A153A(1)|p.H98H(1)|p.0(1)|p.L97fs*21(1)|p.T93_D105del(1)|p.R137fs*48(1)|p.A68fs*3(1)		4199		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)			GCCCCGGCCCGGTGCAGCACCACCAG	0.748000		17								HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)														1385	Whole gene deletion(1316)|Unknown(44)|Substitution - Missense(17)|Deletion - Frameshift(5)|Substitution - coding silent(2)|Deletion - In frame(1)	GRCh37	CM045408|CM056555|CM980329	CDKN2A	M	rs34886500	SO:0001651	inframe_deletion			ENST00000304494.5	1	1	hg19	CCDS6510.1																																																																																				TCGA-FB-A545-01A-11D-A26I-08	CDKN2A-001	KNOWN	basic|appris_candidate|CCDS	protein_coding	protein_coding	OTTHUMT00000051915.1	1	0	0	67	166	0	26	0	9.976177e-01	0	26	0	26	2	1	1	65	140	0	143	2	1	1.000000	72	169	0	23	2	0	0	0	0	0	0		-6.194341	1	1	0	0		1	0	2	2	1.520844	1	0.530000	3.130000	0.530000	0.990000	0.870000	1.000000	1.000000	0.986910	0.990000	1	0.970000	1.000000
PCDH15	65217	broad.mit.edu	37	10	55616938	55616938	+	Missense_Mutation	SNP	G	G	T			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr10:55616938G>T	ENST00000320301.6	-	28	4197	c.3803C>A	c.(3802-3804)aCa>aAa	p.T1268K	PCDH15_ENST00000395433.1_Missense_Mutation_p.T1246K|PCDH15_ENST00000373965.2_Missense_Mutation_p.T1275K|PCDH15_ENST00000395430.1_Missense_Mutation_p.T1268K|PCDH15_ENST00000373957.3_Intron|PCDH15_ENST00000395440.1_Intron|PCDH15_ENST00000395446.1_Intron|PCDH15_ENST00000409834.1_Missense_Mutation_p.T879K|PCDH15_ENST00000395438.1_Missense_Mutation_p.T1268K|PCDH15_ENST00000361849.3_Missense_Mutation_p.T1268K|PCDH15_ENST00000437009.1_Missense_Mutation_p.T1197K|PCDH15_ENST00000395445.1_Missense_Mutation_p.T1275K|PCDH15_ENST00000395442.1_Intron|PCDH15_ENST00000463095.1_5'UTR|PCDH15_ENST00000395432.2_Missense_Mutation_p.T1231K|PCDH15_ENST00000414778.1_Missense_Mutation_p.T1273K	NM_033056.3	NP_149045.3	Q96QU1	PCD15_HUMAN	protocadherin-related 15			237		Melanoma(3;0.117)|Lung SC(717;0.238)			CAATTACTCTGTAAGATCTTC	0.313000										HNSCC(58;0.16)														0							SO:0001583	missense			ENST00000320301.6	1	1	hg19	CCDS7248.1	.	.	.	.	.	.	.	.	.	.	G	21.9	4.210653	0.79240	.	.	ENSG00000150275	ENST00000373965;ENST00000414778;ENST00000455746;ENST00000395438;ENST00000409834;ENST00000395445;ENST00000395432;ENST00000361849;ENST00000395433;ENST00000320301;ENST00000395430;ENST00000417177;ENST00000437009	T;T;T;T;T;T;T;T;T;T;T	0.57273	0.5;0.55;0.49;0.48;0.46;0.44;0.42;0.46;0.44;0.42;0.41	5.17	4.26	0.50523	.	.	.	.	.	T	0.42108	0.1188	N	0.14661	0.345	0.33977	D	0.647511	D;D;D;P;D;D;D;P;P;P;P;P;D	0.54397	0.966;0.959;0.959;0.932;0.958;0.959;0.966;0.59;0.926;0.926;0.814;0.729;0.959	P;P;B;B;P;P;P;B;B;B;B;B;B	0.53035	0.716;0.544;0.424;0.326;0.69;0.544;0.716;0.315;0.424;0.424;0.315;0.315;0.424	T	0.51505	-0.8697	9	0.42905	T	0.14	.	5.2011	0.15264	0.2905:0.0:0.7095:0.0	.	1246;1268;1268;1273;1197;1231;1268;1268;1275;1275;1268;1273;1268	A2A3E8;E7EMG4;A2A3E7;C9JIG1;E7EM53;E7EMG0;A2A3E6;A2A3E3;C6ZEF5;A2A3E2;C6ZEF7;C9J4F3;Q96QU1	.;.;.;.;.;.;.;.;.;.;.;.;PCD15_HUMAN	K	1275;1273;1268;1268;879;1275;1231;1268;1246;1268;1268;1273;1197	ENSP00000363076:T1275K;ENSP00000410304:T1273K;ENSP00000378826:T1268K;ENSP00000386693:T879K;ENSP00000378832:T1275K;ENSP00000378820:T1231K;ENSP00000354950:T1268K;ENSP00000378821:T1246K;ENSP00000322604:T1268K;ENSP00000378818:T1268K;ENSP00000412628:T1197K	ENSP00000322604:T1268K	T	-	2	0	PCDH15	55286944	1.000000	0.71417	1.000000	0.80357	0.982000	0.71751	7.204000	0.77872	2.418000	0.82041	0.655000	0.94253	ACA		TCGA-FB-A545-01A-11D-A26I-08	PCDH15-001	KNOWN	basic|CCDS	protein_coding	protein_coding	OTTHUMT00000048121.2	1	0	1	95	92	0	30		0	0	0	0	30	2		0	0	0	0	0	2	1	1.000000	95	92	0	29	2		0	0	0	0	30	2	-19.999940	1	1	0	0		1	0	2	2	1.605404	1	0.530000	3.130000	0.530000	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
QSER1	79832	broad.mit.edu	37	11	32955744	32955744	+	Silent	SNP	A	A	G			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr11:32955744A>G	ENST00000399302.2	+	4	2888	c.2553A>G	c.(2551-2553)gtA>gtG	p.V851V	QSER1_ENST00000527788.1_Silent_p.V612V	NM_001076786.1	NP_001070254.1	Q2KHR3	QSER1_HUMAN	glutamine and serine rich 1			48	Breast(20;0.158)				TATCAAATGTAGATGATATCT	0.383000																								0							SO:0001819	synonymous_variant			ENST00000399302.2	1	1	hg19	CCDS41631.1																																																																																				TCGA-FB-A545-01A-11D-A26I-08	QSER1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000388448.1	1	0	1	426	443	0	57	1	7.993490e-01	2	3	0	57	2		0	0	0	0	0	2	1	1.000000	425	436	0	57	2		0	0	0	0	57	2	-20.000000	1	1	0	0		1	2	4	6	3.214197	1	0.530000	3.130000	0.771845	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
CD44	960	broad.mit.edu	37	11	35218359	35218359	+	Missense_Mutation	SNP	T	T	G			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08			T	G	T	T		Valid	Somatic	Phase_I	WXS	RNA			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr11:35218359T>G	ENST00000428726.2	+	6	857	c.734T>G	c.(733-735)tTt>tGt	p.F245C	CD44_ENST00000433354.2_Missense_Mutation_p.F245C|CD44_ENST00000526669.2_Intron|CD44_ENST00000360158.4_Intron|CD44_ENST00000352818.4_Intron|CD44_ENST00000449691.2_Missense_Mutation_p.F245C|CD44_ENST00000434472.2_Intron|CD44_ENST00000437706.2_Missense_Mutation_p.F245C|CD44_ENST00000263398.6_Intron|CD44_ENST00000415148.2_Intron|CD44_ENST00000433892.2_Intron|CD44_ENST00000278386.6_Intron	NM_000610.3	NP_000601.3	P16070	CD44_HUMAN	CD44 molecule (Indian blood group)			23	all_cancers(35;0.212)|all_lung(20;0.0874)|all_epithelial(35;0.112)	all_hematologic(20;0.107)	STAD - Stomach adenocarcinoma(6;0.00731)	Hyaluronan(DB08818)	TGGGATTGGTTTTCATGGTTG	0.378000																								0							SO:0001583	missense			ENST00000428726.2	1	1	hg19	CCDS7897.1	.|.	.|.	.|.	.|.	.|.	.|.	.|.	.|.	.|.	.|.	T|T	12.77|12.77	2.039051|2.039051	0.35989|0.35989	.|.	.|.	ENSG00000026508|ENSG00000026508	ENST00000433354;ENST00000449691;ENST00000437706;ENST00000428726|ENST00000525685	T;T;T;T|T	0.18502|0.20463	2.34;2.21;2.33;2.41|2.07	5.04|5.04	5.04|5.04	0.67666|0.67666	.|.	0.497457|0.497457	0.17058|0.17058	N|N	0.188655|0.188655	T|T	0.22475|0.22475	0.0542|0.0542	L|L	0.29908|0.29908	0.895|0.895	0.80722|0.80722	D|D	1|1	D|.	0.63046|.	0.992|.	P|.	0.52710|.	0.707|.	T|T	0.02950|0.02950	-1.1090|-1.1090	10|8	0.35671|0.34782	T|T	0.21|0.22	-0.253|-0.253	11.1936|11.1936	0.48700|0.48700	0.0:0.0:0.0:1.0|0.0:0.0:0.0:1.0	.|.	245|.	P16070|.	CD44_HUMAN|.	C|V	245|113	ENSP00000414567:F245C;ENSP00000391008:F245C;ENSP00000403990:F245C;ENSP00000398632:F245C|ENSP00000436623:F113V	ENSP00000398632:F245C|ENSP00000436623:F113V	F|F	+|+	2|1	0|0	CD44|CD44	35174935|35174935	1.000000|1.000000	0.71417|0.71417	0.944000|0.944000	0.38274|0.38274	0.132000|0.132000	0.20833|0.20833	3.427000|3.427000	0.52785|0.52785	1.873000|1.873000	0.54277|0.54277	0.533000|0.533000	0.62120|0.62120	TTT|TTT		TCGA-FB-A545-01A-11D-A26I-08	CD44-001	KNOWN	basic|CCDS	protein_coding	protein_coding	OTTHUMT00000388927.1	1	0	1	84	227	0	23	1	1	51	31	0	23	2		0	0	0	0	0	2	1	1.000000	83	223	0	23	2		0	0	0	0	23	2	-20.000000	1	1	0	0		1	2	4	6	3.214197	1	0.530000	3.130000	0.771845	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
TMEM132D	121256	broad.mit.edu	37	12	130184677	130184677	+	Missense_Mutation	SNP	C	C	T			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr12:130184677C>T	ENST00000422113.2	-	2	972	c.646G>A	c.(646-648)Gtg>Atg	p.V216M	RP11-174M13.2_ENST00000544036.1_lincRNA	NM_133448.2	NP_597705.2	Q14C87	T132D_HUMAN	transmembrane protein 132D			152	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)			GGCTGGTCCACGGACTTCCTC	0.692000																								0							SO:0001583	missense			ENST00000422113.2	1	1	hg19	CCDS9266.1	.	.	.	.	.	.	.	.	.	.	C	3.487	-0.104728	0.06967	.	.	ENSG00000151952	ENST00000422113	T	0.12039	2.72	5.35	-1.38	0.09027	.	1.295410	0.05175	N	0.500234	T	0.04815	0.0130	N	0.01482	-0.84	0.09310	N	1	B	0.21225	0.053	B	0.09377	0.004	T	0.39461	-0.9613	9	.	.	.	-2.439	9.4725	0.38851	0.0:0.1393:0.6062:0.2545	.	216	Q14C87	T132D_HUMAN	M	216	ENSP00000408581:V216M	.	V	-	1	0	TMEM132D	128750630	0.000000	0.05858	0.000000	0.03702	0.035000	0.12851	-0.785000	0.04628	0.059000	0.16252	0.650000	0.86243	GTG		TCGA-FB-A545-01A-11D-A26I-08	TMEM132D-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000399592.1	1	0	1	132	187	0	55		0	0	0	0	55	2		0	0	0	0	0	2	1	1.000000	132	185	0	54	2		0	0	0	0	55	2	-20.000000	1	1	121410	3	33	1	1	3	4	2.098671	1	0.530000	3.130000	0.643399	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
SOX5	6660	broad.mit.edu	37	12	24048945	24048945	+	Nonsense_Mutation	SNP	G	G	A			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr12:24048945G>A	ENST00000451604.2	-	2	153	c.52C>T	c.(52-54)Cga>Tga	p.R18*	SOX5_ENST00000546136.1_Nonsense_Mutation_p.R5*|SOX5_ENST00000381381.2_Nonsense_Mutation_p.R5*|SOX5_ENST00000545921.1_Nonsense_Mutation_p.R8*|SOX5_ENST00000541536.1_Nonsense_Mutation_p.R5*|SOX5_ENST00000537393.1_Nonsense_Mutation_p.R18*|SOX5_ENST00000309359.1_Nonsense_Mutation_p.R5*|SOX5_ENST00000541847.1_Nonsense_Mutation_p.R8*|SOX5_ENST00000441133.2_Nonsense_Mutation_p.R18*			P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5			57					GAGGCTGGTCGCTTGGAAGAC	0.493000																								0							SO:0001587	stop_gained			ENST00000451604.2	0	1	hg19	CCDS8699.1	.	.	.	.	.	.	.	.	.	.	G	40	8.211190	0.98706	.	.	ENSG00000134532	ENST00000546136;ENST00000309359;ENST00000381381;ENST00000451604;ENST00000435266;ENST00000537393;ENST00000541536;ENST00000545921;ENST00000541847;ENST00000441133;ENST00000538083	.	.	.	5.88	5.88	0.94601	.	0.000000	0.64402	D	0.000001	.	.	.	.	.	.	0.80722	A	1	.	.	.	.	.	.	.	.	.	.	0.02654	T	1	.	20.2366	0.98359	0.0:0.0:1.0:0.0	.	.	.	.	X	5;5;5;18;5;18;5;8;8;18;5	.	ENSP00000308927:R5X	R	-	1	2	SOX5	23940212	1.000000	0.71417	1.000000	0.80357	0.998000	0.95712	9.069000	0.93967	2.792000	0.96026	0.557000	0.71058	CGA		TCGA-FB-A545-01A-11D-A26I-08	SOX5-002	KNOWN	basic|CCDS	protein_coding	protein_coding	OTTHUMT00000402006.2	1	0	0	385	452	0	93		0	0	0	0	93	2		0	0	0	0	0	2	1	1.000000	381	450	0	93	2		0	0	0	0	93	2	-20.000000	1	1	0	0		1	2	6	8	2.179788	1	0.530000	3.130000	0.671168	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	rs121913529		TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08			C	A	C	C		Valid	Somatic	Phase_I	WXS	KRAS_deep			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr12:25398284C>A	ENST00000256078.4	-	2	98	c.35G>T	c.(34-36)gGt>gTt	p.G12V	KRAS_ENST00000556131.1_Missense_Mutation_p.G12V|KRAS_ENST00000557334.1_Missense_Mutation_p.G12V|KRAS_ENST00000311936.3_Missense_Mutation_p.G12V	NM_033360.2	NP_203524.1	P01116	RASK_HUMAN	Kirsten rat sarcoma viral oncogene homolog	p.G12D(8562)|p.G12V(5775)|p.G12A(1407)|p.G12F(46)|p.G12L(8)|p.G12I(4)|p.G12E(3)|p.G12W(3)|p.G12Y(2)|p.G12fs*3(1)|p.G12C(1)|p.G12N(1)	UBE2L3/KRAS(2)	25349	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)		GCCTACGCCACCAGCTCCAAC	0.348000	G12A(KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12A(KPNSI9S_AUTONOMIC_GANGLIA)|G12A(MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12A(NCIH1573_LUNG)|G12A(NCIH2009_LUNG)|G12A(RERFLCAD1_LUNG)|G12A(RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12A(SW1116_LARGE_INTESTINE)|G12D(AGS_STOMACH)|G12D(ASPC1_PANCREAS)|G12D(COLO678_LARGE_INTESTINE)|G12D(HEC1A_ENDOMETRIUM)|G12D(HEC50B_ENDOMETRIUM)|G12D(HEYA8_OVARY)|G12D(HPAC_PANCREAS)|G12D(HPAFII_PANCREAS)|G12D(KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12D(KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12D(KP4_PANCREAS)|G12D(L33_PANCREAS)|G12D(LS180_LARGE_INTESTINE)|G12D(LS513_LARGE_INTESTINE)|G12D(MCAS_OVARY)|G12D(PANC0203_PANCREAS)|G12D(PANC0403_PANCREAS)|G12D(PANC0504_PANCREAS)|G12D(PANC0813_PANCREAS)|G12D(PANC1_PANCREAS)|G12D(PK1_PANCREAS)|G12D(PK59_PANCREAS)|G12D(SKLU1_LUNG)|G12D(SNUC2A_LARGE_INTESTINE)|G12D(SU8686_PANCREAS)|G12D(SUIT2_PANCREAS)|G12D(SW1990_PANCREAS)|G12V(A498_KIDNEY)|G12V(CAPAN2_PANCREAS)|G12V(CFPAC1_PANCREAS)|G12V(COLO668_LUNG)|G12V(CORL23_LUNG)|G12V(DANG_PANCREAS)|G12V(HCC56_LARGE_INTESTINE)|G12V(HUPT4_PANCREAS)|G12V(KP3_PANCREAS)|G12V(LCLC97TM1_LUNG)|G12V(NCIH2444_LUNG)|G12V(NCIH441_LUNG)|G12V(NCIH727_LUNG)|G12V(PANC0327_PANCREAS)|G12V(PATU8902_PANCREAS)|G12V(PATU8988S_PANCREAS)|G12V(QGP1_PANCREAS)|G12V(RCM1_LARGE_INTESTINE)|G12V(RERFLCAD2_LUNG)|G12V(RKN_OVARY)|G12V(SH10TC_STOMACH)|G12V(SHP77_LUNG)|G12V(SNGM_ENDOMETRIUM)|G12V(SW403_LARGE_INTESTINE)|G12V(SW480_LARGE_INTESTINE)|G12V(SW620_LARGE_INTESTINE)|G12V(SW900_LUNG)|G12V(YAPC_PANCREAS)	119	Mis		pancreatic, colorectal, lung, thyroid, AML, others				Noonan syndrome;Cardiofaciocutaneous syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			Pancreas(8;6 143 191 305 2070 2426 4376 10944 11745 26467 38091 50869)		Dom	yes		12	12p12.1	3845	v-Ki-ras2 Kirsten rat sarcoma 2 viral oncogene homolog		L, E, M, O	15813	Substitution - Missense(15812)|Deletion - Frameshift(1)						SO:0001583	missense	Familial Cancer Database	Male Turner syndrome, Pterygium Colli syndrome, incl. Noonan-like/Multiple Giant Cell Lesion syndrome; Noonan s. with multiple lentigines/LEOPARD syndrome;CFC, CFCS	ENST00000256078.4	1	1	hg19	CCDS8703.1	.	.	.	.	.	.	.	.	.	.	C	27.2	4.808637	0.90707	.	.	ENSG00000133703	ENST00000311936;ENST00000557334;ENST00000256078;ENST00000556131	T;T;T;T	0.78707	-1.2;-1.2;-1.2;-1.2	5.68	5.68	0.88126	Small GTP-binding protein domain (1);	0.000000	0.85682	D	0.000000	D	0.90373	0.6987	M	0.90650	3.135	0.80722	D	1	D;D	0.76494	0.997;0.999	D;D	0.72625	0.969;0.978	D	0.91773	0.5429	10	0.72032	D	0.01	.	18.3719	0.90409	0.0:1.0:0.0:0.0	.	12;12	P01116-2;P01116	.;RASK_HUMAN	V	12	ENSP00000308495:G12V;ENSP00000452512:G12V;ENSP00000256078:G12V;ENSP00000451856:G12V	ENSP00000256078:G12V	G	-	2	0	KRAS	25289551	1.000000	0.71417	1.000000	0.80357	0.998000	0.95712	7.743000	0.85020	2.668000	0.90789	0.563000	0.77884	GGT		TCGA-FB-A545-01A-11D-A26I-08	KRAS-004	KNOWN	not_organism_supported|basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000412232.1	1	0	1	38	67	0	13	1	8.861739e-01	7	2	0	13	2	1	1	103	193	0	271	2	1	1.000000	37	66	0	13	2	1	1	3587	4415	0	13	2	-20.000000	1	1	0	0		1	2	6	8	2.179788	1	0.530000	3.130000	0.671168	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
KCNA6	3742	broad.mit.edu	37	12	4920057	4920057	+	Missense_Mutation	SNP	G	G	A			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr12:4920057G>A	ENST00000280684.3	+	1	1716	c.850G>A	c.(850-852)Gcc>Acc	p.A284T	RP11-234B24.4_ENST00000542988.1_lincRNA|KCNA6_ENST00000433855.1_Missense_Mutation_p.A284T			P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related subfamily, member 6			49				Dalfampridine(DB06637)	GCGCTTCTCCGCCTGCCCTAG	0.542000										HNSCC(72;0.22)														0							SO:0001583	missense			ENST00000280684.3	1	1	hg19	CCDS8534.1	.	.	.	.	.	.	.	.	.	.	G	21.1	4.102426	0.76983	.	.	ENSG00000151079	ENST00000433855;ENST00000280684	D;D	0.99023	-5.34;-5.34	5.28	5.28	0.74379	Ion transport (1);	0.108992	0.64402	D	0.000010	D	0.96756	0.8941	N	0.21142	0.635	0.53688	D	0.999972	P	0.47910	0.902	B	0.43155	0.41	D	0.96581	0.9430	10	0.56958	D	0.05	.	13.4363	0.61086	0.0772:0.0:0.9228:0.0	.	284	P17658	KCNA6_HUMAN	T	284	ENSP00000408321:A284T;ENSP00000280684:A284T	ENSP00000280684:A284T	A	+	1	0	KCNA6	4790318	1.000000	0.71417	0.992000	0.48379	0.991000	0.79684	7.736000	0.84948	2.746000	0.94184	0.655000	0.94253	GCC		TCGA-FB-A545-01A-11D-A26I-08	KCNA6-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000398909.1	1	0	1	258	381	0	92		0	0	0	0	92	2		0	0	0	0	0	2	1	1.000000	257	381	0	91	2		0	0	0	0	92	2	-20.000000	1	1	0	0		1	2	5	7	2.133899	1	0.530000	3.130000	0.663685	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
ADAMTS7	11173	broad.mit.edu	37	15	79090455	79090455	+	Splice_Site	SNP	T	T	C			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr15:79090455T>C	ENST00000388820.4	-	3	667	c.457A>G	c.(457-459)Aaa>Gaa	p.K153E	ADAMTS7_ENST00000566303.1_5'UTR	NM_014272.3	NP_055087.2	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1 motif, 7			54					AACACACCTTTCTGGGGAAGA	0.652000																								0							SO:0001630	splice_region_variant			ENST00000388820.4	1	0	hg19	CCDS32303.1	.	.	.	.	.	.	.	.	.	.	T	15.07	2.722889	0.48728	.	.	ENSG00000136378	ENST00000388820;ENST00000456326	T	0.05786	3.39	4.5	3.36	0.38483	Peptidase M12B, propeptide (1);	0.255369	0.38492	N	0.001670	T	0.08802	0.0218	M	0.68317	2.08	0.36372	D	0.861369	B;B;P	0.35527	0.24;0.24;0.507	B;B;B	0.37731	0.253;0.232;0.257	T	0.23511	-1.0186	10	0.17369	T	0.5	.	10.1068	0.42539	0.0:0.0:0.1867:0.8133	.	153;153;153	E7EP58;A8MQ00;Q9UKP4	.;.;ATS7_HUMAN	E	153	ENSP00000373472:K153E	ENSP00000373472:K153E	K	-	1	0	ADAMTS7	76877510	1.000000	0.71417	0.999000	0.59377	0.620000	0.37586	3.905000	0.56333	0.671000	0.31185	0.260000	0.18958	AAA		TCGA-FB-A545-01A-11D-A26I-08	ADAMTS7-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000421331.1	1	0	1	169	149	0	58	0	5.466691e-01	0	3	0	58	2		0	0	0	0	0	2	1	1.000000	166	149	0	57	2		0	0	0	0	58	2	-20.000000	1	1	0	0		1	0	2	2	1.600549	1	0.530000	3.130000	0.530000	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
NTRK3	4916	broad.mit.edu	37	15	88483870	88483870	+	Missense_Mutation	SNP	A	A	G			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr15:88483870A>G	ENST00000360948.2	-	14	1861	c.1700T>C	c.(1699-1701)aTg>aCg	p.M567T	NTRK3_ENST00000558676.1_Missense_Mutation_p.M559T|NTRK3_ENST00000394480.2_Missense_Mutation_p.M567T|NTRK3_ENST00000542733.2_Missense_Mutation_p.M469T|NTRK3_ENST00000557856.1_Missense_Mutation_p.M559T|NTRK3_ENST00000357724.2_Missense_Mutation_p.M559T|NTRK3_ENST00000355254.2_Missense_Mutation_p.M567T	NM_001012338.2	NP_001012338.1	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3		ETV6/NTRK3(238)	119			BRCA - Breast invasive adenocarcinoma(143;0.211)		AGCCACAAGCATCTTGTCCTT	0.592000			T	ETV6	congenital fibrosarcoma, Secretory breast 					TSP Lung(13;0.10)					Dom	yes		15	15q25	4916	neurotrophic tyrosine kinase, receptor, type 3		E, M	0							SO:0001583	missense			ENST00000360948.2	1	1	hg19	CCDS32322.1	.	.	.	.	.	.	.	.	.	.	A	15.52	2.858456	0.51376	.	.	ENSG00000140538	ENST00000394480;ENST00000360948;ENST00000357724;ENST00000355254;ENST00000542733;ENST00000343782	D;D;D;D;D	0.88201	-2.35;-2.35;-2.35;-2.35;-2.35	5.29	5.29	0.74685	Serine-threonine/tyrosine-protein kinase (1);Protein kinase-like domain (1);Tyrosine-protein kinase, catalytic domain (1);Protein kinase, catalytic domain (1);	0.000000	0.85682	D	0.000000	T	0.74458	0.3719	N	0.01473	-0.845	0.80722	D	1	B;B;B;B;B	0.33919	0.253;0.432;0.236;0.213;0.115	B;B;B;B;B	0.41466	0.208;0.358;0.241;0.14;0.115	T	0.75584	-0.3267	10	0.02654	T	1	.	14.3918	0.66983	1.0:0.0:0.0:0.0	.	469;559;559;567;567	B7Z7U4;E9PG56;B7Z4C5;Q16288-3;Q16288	.;.;.;.;NTRK3_HUMAN	T	567;567;559;567;469;63	ENSP00000377990:M567T;ENSP00000354207:M567T;ENSP00000350356:M559T;ENSP00000347397:M567T;ENSP00000437773:M469T	ENSP00000342792:M63T	M	-	2	0	NTRK3	86284874	1.000000	0.71417	1.000000	0.80357	0.993000	0.82548	9.020000	0.93667	2.004000	0.58718	0.533000	0.62120	ATG		TCGA-FB-A545-01A-11D-A26I-08	NTRK3-204	KNOWN	basic|CCDS	protein_coding	protein_coding		1	0	1	208	240	0	75		0	0	0	0	75	2		0	0	0	0	0	2	1	1.000000	206	235	0	75	2		0	0	0	0	75	2	-20.000000	1	1	0	0		1	0	2	2	1.600549	1	0.530000	3.130000	0.530000	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
ATXN2L	11273	broad.mit.edu	37	16	28841310	28841310	+	Missense_Mutation	SNP	C	C	T			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08			C	T	C	C		Valid	Somatic	Phase_I	WXS	RNA			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr16:28841310C>T	ENST00000336783.4	+	8	1132	c.965C>T	c.(964-966)aCt>aTt	p.T322I	ATXN2L_ENST00000325215.6_Missense_Mutation_p.T322I|ATXN2L_ENST00000395547.2_Missense_Mutation_p.T322I|ATXN2L_ENST00000382686.4_Missense_Mutation_p.T322I|RP11-24N18.1_ENST00000563565.1_RNA|ATXN2L_ENST00000564304.1_Missense_Mutation_p.T322I|ATXN2L_ENST00000570200.1_Missense_Mutation_p.T322I|ATXN2L_ENST00000340394.8_Missense_Mutation_p.T322I	NM_007245.3	NP_009176.2	Q8WWM7	ATX2L_HUMAN	ataxin 2-like			36					GATGGGCGCACTGAAGAGGAG	0.612000																								0							SO:0001583	missense			ENST00000336783.4	1	1	hg19	CCDS10641.1	.	.	.	.	.	.	.	.	.	.	.	23.5	4.424961	0.83667	.	.	ENSG00000168488	ENST00000340394;ENST00000395547;ENST00000336783;ENST00000359153;ENST00000382686;ENST00000325215	T;T;T;T;T	0.47869	0.83;0.83;0.83;0.84;0.83	5.7	5.7	0.88788	LsmAD domain (1);	0.000000	0.85682	D	0.000000	T	0.63271	0.2497	L	0.43152	1.355	0.52099	D	0.999944	D;D;D;D;D;D;D;D	0.76494	0.999;0.999;0.999;0.999;0.999;0.999;0.999;0.999	D;D;D;D;D;D;D;D	0.72338	0.961;0.961;0.977;0.977;0.961;0.961;0.977;0.961	T	0.64292	-0.6442	10	0.87932	D	0	-12.0156	18.5887	0.91200	0.0:1.0:0.0:0.0	.	322;322;322;322;322;322;322;322	Q8WWM7-6;Q8WWM7-5;Q63ZY4;Q8WWM7;Q8WWM7-2;Q8WWM7-4;A8K1R6;Q8WWM7-3	.;.;.;ATX2L_HUMAN;.;.;.;.	I	322	ENSP00000341459:T322I;ENSP00000378917:T322I;ENSP00000338718:T322I;ENSP00000372133:T322I;ENSP00000315650:T322I	ENSP00000315650:T322I	T	+	2	0	ATXN2L	28748811	0.877000	0.30153	0.994000	0.49952	0.990000	0.78478	1.577000	0.36515	2.702000	0.92279	0.491000	0.48974	ACT		TCGA-FB-A545-01A-11D-A26I-08	ATXN2L-003	KNOWN	basic|appris_candidate|CCDS	protein_coding	protein_coding	OTTHUMT00000214139.1	0	0	0	128	213	1	33	1	1	37	63	1	33	11		0	0	0	0	0	2	1	1.000000	128	211	1	33	28		0	0	0	1	33	2	-20.000000	1	1	0	0		1	2	2	4	2.242656	1	0.530000	3.130000	0.678325	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
TP53	7157	broad.mit.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343		TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08			G	A	G	G		Valid	Somatic	Phase_I	WXS	targeted			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr17:7577121G>A	ENST00000269305.4	-	8	1006	c.817C>T	c.(817-819)Cgt>Tgt	p.R273C	TP53_ENST00000445888.2_Missense_Mutation_p.R273C|TP53_ENST00000574684.1_5'Flank|TP53_ENST00000455263.2_Missense_Mutation_p.R273C|TP53_ENST00000420246.2_Missense_Mutation_p.R273C|TP53_ENST00000359597.4_Missense_Mutation_p.R273C|TP53_ENST00000413465.2_Intron	NM_000546.5|NM_001126112.2|NM_001126118.1|NM_001276760.1|NM_001276761.1	NP_000537.3|NP_001119584.1|NP_001119590.1|NP_001263689.1|NP_001263690.1	P04637	P53_HUMAN	tumor protein p53	p.R273C(481)|p.R273S(16)|p.R273G(9)|p.0?(8)|p.?(2)|p.R273fs*72(2)|p.R273fs*33(2)|p.R273fs*32(2)|p.V272>?(2)|p.F270fs*72(1)|p.R273_C275delRVC(1)|p.L265_K305del41(1)|p.S269fs*21(1)|p.E258fs*71(1)|p.R273fs*71(1)|p.F270_D281del12(1)|p.E271_R273delEVR(1)|p.V272_K292del21(1)		24185		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		Acetylsalicylic acid(DB00945)	GCACAAACACGCACCTCAAAG	0.542000	R273C(8MGBA_CENTRAL_NERVOUS_SYSTEM)|R273C(BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(EFO27_OVARY)|R273C(KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(MFE319_ENDOMETRIUM)|R273C(NCIH1048_LUNG)|R273C(PANC0213_PANCREAS)|R273C(PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(RDES_BONE)|R273C(RH30_SOFT_TISSUE)|R273C(RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(SH10TC_STOMACH)|R273C(SJRH30_SOFT_TISSUE)|R273C(SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(SW1710_URINARY_TRACT)|R273C(SW1783_CENTRAL_NERVOUS_SYSTEM)|R273C(TT2609C02_THYROID)	111	Mis, N, F		breast, colorectal, lung, sarcoma, adrenocortical, glioma, multiple other tumour types	breast, sarcoma, adrenocortical carcinoma, glioma, multiple other tumour types		Other conserved DNA damage response genes	Osteosarcoma, Familial Clustering of;Li-Fraumeni syndrome;Hereditary Breast-Ovarian Cancer, non-BRCA1/2;Hereditary Adrenocortical Cancer;Endometrial Cancer, Familial Clustering of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			Pancreas(47;798 1329 9957 10801)	yes	Rec	yes	Li-Fraumeni syndrome	17	17p13	7157	tumor protein p53		L, E, M, O	533	Substitution - Missense(506)|Whole gene deletion(8)|Deletion - Frameshift(8)|Deletion - In frame(5)|Insertion - Frameshift(2)|Unknown(2)|Complex(2)	GRCh37	CM010471|CM010473|CM951233	TP53	M	rs121913343	SO:0001583	missense	Familial Cancer Database	Familial Osteogenic Sarcoma;LFS, SBLA syndrome (Sarcoma Breast Leukemia Adrenal cancer), incl.: Cancer with In Vitro Radioresistence, Familial, Li-Fraumeni-like s.;BRCAX;Familial Adrenocortical Carcinoma;	ENST00000269305.4	1	1	hg19	CCDS11118.1	.	.	.	.	.	.	.	.	.	.	G	17.48	3.400216	0.62177	.	.	ENSG00000141510	ENST00000359597;ENST00000269305;ENST00000455263;ENST00000420246;ENST00000445888;ENST00000396473;ENST00000509690	D;D;D;D;D;D	0.99869	-7.34;-7.34;-7.34;-7.34;-7.34;-7.34	4.92	3.95	0.45737	p53, DNA-binding domain (1);p53-like transcription factor, DNA-binding (1);p53/RUNT-type transcription factor, DNA-binding domain (1);	0.000000	0.85682	D	0.000000	D	0.99851	0.9931	M	0.90759	3.145	0.80722	D	1	D;D;D;D	0.89917	1.0;1.0;1.0;1.0	D;D;D;D	0.91635	0.998;0.998;0.999;0.996	D	0.96877	0.9643	10	0.87932	D	0	-11.9995	11.2235	0.48869	0.0895:0.0:0.9105:0.0	.	273;273;273;273	P04637-2;P04637-3;P04637;Q1MSW8	.;.;P53_HUMAN;.	C	273;273;273;273;273;262;141	ENSP00000352610:R273C;ENSP00000269305:R273C;ENSP00000398846:R273C;ENSP00000391127:R273C;ENSP00000391478:R273C;ENSP00000425104:R141C	ENSP00000269305:R273C	R	-	1	0	TP53	7517846	1.000000	0.71417	0.066000	0.19879	0.723000	0.41478	4.540000	0.60664	1.299000	0.44798	0.462000	0.41574	CGT		TCGA-FB-A545-01A-11D-A26I-08	TP53-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000367397.1	1	0	0	87	73	0	21	1	1	17	20	0	21	2	1	1	380	262	0	731	2	1	1.000000	86	73	0	21	2		0	0	0	0	21	2	-20.000000	1	1	121412	1	37	1	0	2	2	1.413790	1	0.530000	3.130000	0.530000	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
USH2A	7399	broad.mit.edu	37	1	215960150	215960150	+	Missense_Mutation	SNP	C	C	T			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr1:215960150C>T	ENST00000307340.3	-	52	10635	c.10249G>A	c.(10249-10251)Gac>Aac	p.D3417N	USH2A_ENST00000366943.2_Missense_Mutation_p.D3417N	NM_206933.2	NP_996816	O75445	USH2A_HUMAN	Usher syndrome 2A (autosomal recessive, mild)			527					AAGTTGAAGTCACACCTGCCA	0.493000										HNSCC(13;0.011)														0							SO:0001583	missense			ENST00000307340.3	1	1	hg19	CCDS31025.1	.	.	.	.	.	.	.	.	.	.	C	16.80	3.223870	0.58668	.	.	ENSG00000042781	ENST00000307340;ENST00000366943	T;T	0.16897	2.33;2.31	4.88	3.96	0.45880	Fibronectin, type III (3);	0.000000	0.47455	D	0.000226	T	0.20007	0.0481	M	0.69823	2.125	0.43637	D	0.996032	B	0.19200	0.034	B	0.16722	0.016	T	0.03453	-1.1035	10	0.39692	T	0.17	.	10.8728	0.46894	0.0:0.9128:0.0:0.0872	.	3417	O75445	USH2A_HUMAN	N	3417	ENSP00000305941:D3417N;ENSP00000355910:D3417N	ENSP00000305941:D3417N	D	-	1	0	USH2A	214026773	1.000000	0.71417	0.997000	0.53966	0.930000	0.56654	1.227000	0.32576	2.225000	0.72522	0.655000	0.94253	GAC		TCGA-FB-A545-01A-11D-A26I-08	USH2A-002	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000128138.1	1	0	1	64	213	0	33		0	0	0	0	33	2		0	0	0	0	0	2	1	1.000000	61	203	0	33	2		0	0	0	0	33	2	-20.000000	1	1	0	0		1	1	3	4	2.024946	1	0.530000	3.130000	0.637569	0.990000	0.910000	1.000000	1.000000	0.994242	0.990000	1	0.990000	1.000000
SPATA17	128153	broad.mit.edu	37	1	217947827	217947827	+	Missense_Mutation	SNP	G	G	A			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr1:217947827G>A	ENST00000366933.4	+	7	726	c.671G>A	c.(670-672)cGt>cAt	p.R224H		NM_138796.2	NP_620151.1	Q96L03	SPT17_HUMAN	spermatogenesis associated 17			21					ACAAGCGCCCGTTCTTTTCCT	0.403000																								0							SO:0001583	missense			ENST00000366933.4	1	1	hg19	CCDS1519.1	.	.	.	.	.	.	.	.	.	.	G	9.603	1.129341	0.21041	2.27E-4	0.0	ENSG00000162814	ENST00000366933	T	0.46451	0.87	5.45	1.39	0.22231	.	0.436237	0.24820	N	0.035323	T	0.20618	0.0496	N	0.25890	0.77	0.09310	N	1	B	0.12630	0.006	B	0.04013	0.001	T	0.10177	-1.0641	10	0.15499	T	0.54	-12.9268	1.6448	0.02759	0.3165:0.1634:0.4025:0.1176	.	224	Q96L03	SPT17_HUMAN	H	224	ENSP00000355900:R224H	ENSP00000355900:R224H	R	+	2	0	SPATA17	216014450	0.000000	0.05858	0.053000	0.19242	0.387000	0.30353	-0.047000	0.11963	0.339000	0.23719	0.563000	0.77884	CGT		TCGA-FB-A545-01A-11D-A26I-08	SPATA17-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000092433.2	1	0	1	146	202	0	39	0	1.770940e-01	1	1	0	39	2		0	0	0	0	0	2	1	1.000000	145	200	0	39	2		0	0	0	0	39	2	-20.000000	1	1	121412	2	35	1	1	3	4	2.024946	1	0.530000	3.130000	0.637569	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
BAI2	576	broad.mit.edu	37	1	32196436	32196436	+	Missense_Mutation	SNP	C	C	T			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr1:32196436C>T	ENST00000373658.3	-	29	4686	c.4345G>A	c.(4345-4347)Gtg>Atg	p.V1449M	BAI2_ENST00000257070.4_Missense_Mutation_p.V1416M|BAI2_ENST00000465256.1_5'UTR|BAI2_ENST00000440175.2_Missense_Mutation_p.V1058M|BAI2_ENST00000398542.1_Missense_Mutation_p.V1349M|BAI2_ENST00000398556.3_Missense_Mutation_p.V1364M|BAI2_ENST00000398547.1_Missense_Mutation_p.V1382M|BAI2_ENST00000527361.1_Missense_Mutation_p.V1416M|BAI2_ENST00000398538.1_Missense_Mutation_p.V1437M|BAI2_ENST00000373655.2_Missense_Mutation_p.V1449M	NM_001703.2	NP_001694.2	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2			55		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)			GAGCCGGGCACGGTGCGAGGC	0.647000																								0							SO:0001583	missense			ENST00000373658.3	1	1	hg19	CCDS346.2	.	.	.	.	.	.	.	.	.	.	C	20.9	4.061905	0.76187	.	.	ENSG00000121753	ENST00000398556;ENST00000398547;ENST00000373658;ENST00000373655;ENST00000398542;ENST00000257070;ENST00000527361;ENST00000440175;ENST00000398538	T;T;T;T;T;T;T;T;T	0.05382	3.45;3.45;3.45;3.45;3.45;3.45;3.45;3.45;3.45	5.74	5.74	0.90152	.	0.000000	0.38897	N	0.001528	T	0.19248	0.0462	L	0.43152	1.355	0.39977	D	0.974866	D;D;P;D;D;D;D	0.89917	0.997;0.996;0.454;1.0;0.997;0.993;1.0	D;P;B;D;D;P;D	0.65233	0.933;0.85;0.072;0.925;0.933;0.713;0.925	T	0.00057	-1.2171	10	0.54805	T	0.06	.	19.9066	0.97010	0.0:1.0:0.0:0.0	.	1416;1437;1058;1364;1449;1449;1437	O60241-4;O60241-3;B4DKC3;A2A3C6;O60241-2;O60241;A2A3C2	.;.;.;.;.;BAI2_HUMAN;.	M	1364;1382;1449;1449;1349;1416;1416;1058;1437	ENSP00000381564:V1364M;ENSP00000381555:V1382M;ENSP00000362762:V1449M;ENSP00000362759:V1449M;ENSP00000381550:V1349M;ENSP00000257070:V1416M;ENSP00000435397:V1416M;ENSP00000391071:V1058M;ENSP00000381548:V1437M	ENSP00000257070:V1416M	V	-	1	0	BAI2	31969023	0.999000	0.42202	0.997000	0.53966	0.975000	0.68041	4.281000	0.58965	2.884000	0.98904	0.655000	0.94253	GTG		TCGA-FB-A545-01A-11D-A26I-08	BAI2-015	KNOWN	basic|CCDS	protein_coding	protein_coding	OTTHUMT00000381838.1	1	0	1	94	402	0	91	0	3.220598e-01	0	6	0	91	2		0	0	0	0	0	2	1	1.000000	93	400	0	91	2		0	0	0	0	91	2	-20.000000	1	1	0	0		1	1	2	3	1.993825	1	0.530000	3.130000	0.628458	0.900000	0.740000	1.000000	1.000000	0.902904	0.900000	1	0.810000	0.990000
C1orf174	339448	broad.mit.edu	37	1	3809528	3809528	+	Missense_Mutation	SNP	C	C	G	rs35157037	byFrequency	TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr1:3809528C>G	ENST00000361605.3	-	2	146	c.48G>C	c.(46-48)ttG>ttC	p.L16F	C1orf174_ENST00000486765.1_5'UTR	NM_207356.2	NP_997239.2	Q8IYL3	CA174_HUMAN	chromosome 1 open reading frame 174			11	all_cancers(77;0.0395)|Ovarian(185;0.0634)|all_lung(157;0.222)|Lung NSC(156;0.227)	all_cancers(23;5.09e-25)|all_epithelial(116;9.35e-17)|all_lung(118;1.09e-06)|Lung NSC(185;0.000139)|all_neural(13;0.00287)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0219)|all_hematologic(16;0.027)|Colorectal(325;0.0276)|Myeloproliferative disorder(586;0.0393)|Lung SC(97;0.0743)|Ovarian(437;0.127)			TTCGTGCTTTCAAGCGCGCTG	0.552000																								0							SO:0001583	missense			ENST00000361605.3	1	0	hg19	CCDS53.1	.	.	.	.	.	.	.	.	.	.	C	10.49	1.364705	0.24684	.	.	ENSG00000198912	ENST00000361605	T	0.27256	1.68	4.32	-3.09	0.05331	.	0.201603	0.32884	N	0.005522	T	0.33235	0.0856	L	0.58101	1.795	0.09310	N	0.999999	D	0.89917	1.0	D	0.81914	0.995	T	0.17137	-1.0379	10	0.52906	T	0.07	-21.7736	1.8365	0.03141	0.1312:0.3716:0.1314:0.3657	.	16	Q8IYL3	CA174_HUMAN	F	16	ENSP00000355306:L16F	ENSP00000355306:L16F	L	-	3	2	C1orf174	3799388	0.067000	0.21026	0.017000	0.16124	0.017000	0.09413	-0.052000	0.11865	-0.454000	0.07066	0.462000	0.41574	TTG		TCGA-FB-A545-01A-11D-A26I-08	C1orf174-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000010539.1	1	0	1	39	151	0	34	1	8.866638e-01	7	10	0	34	2		0	0	0	0	0	2	1	1.000000	39	150	0	34	2		0	0	0	0	34	2	-2.019185	0	1	0	0		1	1	2	3	1.962060	1	0.530000	3.130000	0.628458	0.970000	0.720000	1.000000	1.000000	0.939783	0.970000	1	0.840000	1.000000
C1orf87	127795	broad.mit.edu	37	1	60491098	60491098	+	Missense_Mutation	SNP	C	C	G			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr1:60491098C>G	ENST00000371201.3	-	8	1209	c.1102G>C	c.(1102-1104)Gat>Cat	p.D368H	C1orf87_ENST00000450089.2_Missense_Mutation_p.D139H	NM_152377.2	NP_689590.1	Q8N0U7	CA087_HUMAN	chromosome 1 open reading frame 87			33					TAACCCAAATCTTGATGGTTA	0.363000													NSCLC(75;811 1386 4923 13371 51772)											0							SO:0001583	missense			ENST00000371201.3	1	1	hg19	CCDS614.1	.	.	.	.	.	.	.	.	.	.	C	15.78	2.935246	0.52866	.	.	ENSG00000162598	ENST00000371201;ENST00000450089	T	0.61158	0.13	5.09	2.2	0.27929	EF-hand-like domain (1);	0.584662	0.16488	N	0.212227	T	0.47820	0.1466	L	0.56769	1.78	0.80722	D	1	B	0.31931	0.347	B	0.29176	0.099	T	0.44065	-0.9352	10	0.72032	D	0.01	-3.802	5.065	0.14578	0.0:0.6433:0.1715:0.1851	.	368	Q8N0U7	CA087_HUMAN	H	368;139	ENSP00000360244:D368H	ENSP00000360244:D368H	D	-	1	0	C1orf87	60263686	0.912000	0.30974	0.991000	0.47740	0.886000	0.51366	1.044000	0.30329	0.322000	0.23283	0.555000	0.69702	GAT		TCGA-FB-A545-01A-11D-A26I-08	C1orf87-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000024943.1	1	0	1	96	196	0	39		0	0	0	0	39	2		0	0	0	0	0	2	1	1.000000	95	195	0	38	2		0	0	0	0	39	2	-20.000000	1	1	0	0		1	1	2	3	1.993825	1	0.530000	3.130000	0.628458	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
COL24A1	255631	broad.mit.edu	37	1	86497562	86497562	+	Splice_Site	SNP	C	C	G			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr1:86497562C>G	ENST00000370571.2	-	14	2414	c.2048G>C	c.(2047-2049)aGa>aCa	p.R683T	COL24A1_ENST00000436319.1_Splice_Site_p.R683T	NM_152890.5	NP_690850.2	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1			101					GATACTCACTCTAAGCCCAGG	0.338000																								0							SO:0001630	splice_region_variant			ENST00000370571.2	1	0	hg19	CCDS41353.1	.	.	.	.	.	.	.	.	.	.	C	12.12	1.843508	0.32606	.	.	ENSG00000171502	ENST00000370571;ENST00000436319	D;D	0.94330	-3.4;-3.4	5.87	3.98	0.46160	.	0.392618	0.18587	N	0.136858	D	0.84737	0.5538	L	0.49256	1.55	0.46631	D	0.999131	B	0.10296	0.003	B	0.10450	0.005	T	0.79497	-0.1779	10	0.10902	T	0.67	.	16.8292	0.85939	0.0:0.758:0.242:0.0	.	683	Q17RW2	COOA1_HUMAN	T	683	ENSP00000359603:R683T;ENSP00000392531:R683T	ENSP00000359603:R683T	R	-	2	0	COL24A1	86270150	1.000000	0.71417	0.998000	0.56505	0.998000	0.95712	2.828000	0.48120	0.912000	0.36772	0.655000	0.94253	AGA		TCGA-FB-A545-01A-11D-A26I-08	COL24A1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000029335.4	1	0	1	203	289	0	48		0	0	0	0	48	2		0	0	0	0	0	2	1	1.000000	200	284	0	48	2		0	0	0	0	48	2	-20.000000	1	1	0	0		1	1	2	3	1.993825	1	0.530000	3.130000	0.628458	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
TOX2	84969	broad.mit.edu	37	20	42635419	42635419	+	Missense_Mutation	SNP	G	G	T			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr20:42635419G>T	ENST00000358131.5	+	3	633	c.425G>T	c.(424-426)gGc>gTc	p.G142V	TOX2_ENST00000372999.1_Missense_Mutation_p.G91V|RN7SL443P_ENST00000464331.2_RNA|TOX2_ENST00000341197.4_Missense_Mutation_p.G133V|TOX2_ENST00000423191.2_Missense_Mutation_p.G91V	NM_001098798.1	NP_001092268.1	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2			26		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)		CTGCTGTCGGGCCAGCTGCCC	0.587000																								0							SO:0001583	missense			ENST00000358131.5	1	1	hg19	CCDS42875.1	.	.	.	.	.	.	.	.	.	.	G	13.96	2.391733	0.42410	.	.	ENSG00000124191	ENST00000341197;ENST00000442881;ENST00000423191;ENST00000372999;ENST00000358131	T;T;T;T;T	0.21361	2.01;2.01;2.01;2.01;2.01	5.61	5.61	0.85477	.	0.440984	0.25575	N	0.029739	T	0.19805	0.0476	L	0.29908	0.895	0.80722	D	1	P;B;B;B	0.39480	0.675;0.151;0.058;0.115	B;B;B;B	0.41988	0.372;0.045;0.022;0.033	T	0.01476	-1.1345	10	0.40728	T	0.16	.	13.8806	0.63680	0.0:0.1528:0.8472:0.0	.	133;91;142;91	G3XAC7;A8K1J1;Q96NM4;E1P5X0	.;.;TOX2_HUMAN;.	V	133;91;91;91;142	ENSP00000344724:G133V;ENSP00000396584:G91V;ENSP00000390278:G91V;ENSP00000362090:G91V;ENSP00000350849:G142V	ENSP00000344724:G133V	G	+	2	0	TOX2	42068833	0.999000	0.42202	0.981000	0.43875	0.998000	0.95712	4.475000	0.60210	2.631000	0.89168	0.655000	0.94253	GGC		TCGA-FB-A545-01A-11D-A26I-08	TOX2-001	KNOWN	basic|CCDS	protein_coding	protein_coding	OTTHUMT00000079329.2	1	0	1	55	131	0	30	0	8.983452e-02	0	2	0	30	2		0	0	0	0	0	2	1	1.000000	54	129	0	29	2		0	0	0	0	30	2	-20.000000	1	1	0	0		1	2	2	4	2.276915	1	0.530000	3.130000	0.682925	0.990000	0.990000	1.000000	1.000000	0.999999	0.990000	1	0.990000	1.000000
ZNF74	7625	broad.mit.edu	37	22	20760941	20760941	+	Missense_Mutation	SNP	A	A	G			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr22:20760941A>G	ENST00000400451.2	+	5	2132	c.1618A>G	c.(1618-1620)Aac>Gac	p.N540D	ZNF74_ENST00000405993.1_Missense_Mutation_p.N508D|ZNF74_ENST00000356671.5_Missense_Mutation_p.N540D|ZNF74_ENST00000357502.5_3'UTR|ZNF74_ENST00000403682.3_3'UTR	NM_003426.3	NP_003417.2	Q16587	ZNF74_HUMAN	zinc finger protein 74			19	Melanoma(16;0.000465)|Ovarian(15;0.0025)|Colorectal(54;0.0221)|all_neural(72;0.219)	Lung SC(17;0.0262)|all_lung(157;0.248)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)		CTTCAGCCAGAACCACTGTCT	0.547000																								0							SO:0001583	missense			ENST00000400451.2	1	1	hg19	CCDS42982.1	.	.	.	.	.	.	.	.	.	.	A	17.26	3.343858	0.61073	.	.	ENSG00000185252	ENST00000400451;ENST00000356671;ENST00000405993	T;T;T	0.28255	1.62;1.62;1.62	4.15	4.15	0.48705	Zinc finger, C2H2-like (1);Zinc finger, C2H2 (3);Zinc finger, C2H2-type/integrase, DNA-binding (1);	0.000000	0.43747	D	0.000526	T	0.25306	0.0615	N	0.17564	0.495	0.21579	N	0.999635	D	0.58268	0.982	P	0.52554	0.702	T	0.05037	-1.0910	10	0.36615	T	0.2	-40.4338	7.9518	0.30019	0.7914:0.2086:0.0:0.0	.	540	Q16587	ZNF74_HUMAN	D	540;540;508	ENSP00000383301:N540D;ENSP00000349098:N540D;ENSP00000385855:N508D	ENSP00000349098:N540D	N	+	1	0	ZNF74	19090941	0.000000	0.05858	1.000000	0.80357	0.980000	0.70556	0.322000	0.19576	2.097000	0.63578	0.533000	0.62120	AAC		TCGA-FB-A545-01A-11D-A26I-08	ZNF74-005	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000319648.2	1	0	1	203	410	0	75	0	6.445573e-01	0	6	0	75	2		0	0	0	0	0	2	1	1.000000	201	405	0	74	2		0	0	0	0	75	2	-20.000000	1	1	0	0		1	2	2	4	2.312570	1	0.530000	3.130000	0.687396	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
TRIOBP	11078	broad.mit.edu	37	22	38119251	38119251	+	Missense_Mutation	SNP	G	G	A			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr22:38119251G>A	ENST00000406386.3	+	7	943	c.688G>A	c.(688-690)Ggg>Agg	p.G230R		NM_001039141.2	NP_001034230.1	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein			12	Melanoma(58;0.0574)				GGGAGAAAGCGGGTTGTCCCT	0.647000																								0							SO:0001583	missense			ENST00000406386.3	1	1	hg19	CCDS43015.1	.	.	.	.	.	.	.	.	.	.	G	8.003	0.755843	0.15846	.	.	ENSG00000100106	ENST00000406386;ENST00000417174	T	0.29917	1.55	4.74	1.45	0.22620	.	.	.	.	.	T	0.16085	0.0387	N	0.14661	0.345	0.09310	N	1	B	0.13145	0.007	B	0.09377	0.004	T	0.21109	-1.0255	9	0.66056	D	0.02	.	4.2708	0.10785	0.2696:0.0:0.5734:0.157	.	230	Q9H2D6	TARA_HUMAN	R	230	ENSP00000384312:G230R	ENSP00000384312:G230R	G	+	1	0	TRIOBP	36449197	0.006000	0.16342	0.021000	0.16686	0.137000	0.21094	0.354000	0.20146	0.456000	0.26937	-0.381000	0.06696	GGG		TCGA-FB-A545-01A-11D-A26I-08	TRIOBP-001	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000319439.2	1	0	1	76	173	0	34		0	0	0	0	34	2		0	0	0	0	0	2	1	1.000000	75	171	0	34	2		0	0	0	0	34	2	-7.784357	1	1	0	0		1	2	2	4	2.318011	1	0.530000	3.130000	0.688494	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
TTN	7273	broad.mit.edu	37	2	179655562	179655562	+	Missense_Mutation	SNP	T	T	C			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr2:179655562T>C	ENST00000591111.1	-	11	1897	c.1673A>G	c.(1672-1674)gAa>gGa	p.E558G	TTN_ENST00000360870.5_Missense_Mutation_p.E558G|TTN_ENST00000342992.6_Missense_Mutation_p.E558G|TTN_ENST00000460472.2_Intron|TTN_ENST00000589042.1_Missense_Mutation_p.E558G|TTN_ENST00000342175.6_Intron|TTN_ENST00000359218.5_Intron			Q8WZ42	TITIN_HUMAN	titin			1448			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)		TATCTCAGTTTCCTGTCTTAT	0.393000																								0							SO:0001583	missense			ENST00000591111.1	1	1	hg19		.	.	.	.	.	.	.	.	.	.	T	12.33	1.904601	0.33628	.	.	ENSG00000155657	ENST00000342992;ENST00000360870	T;T	0.79247	-1.25;-1.25	5.07	3.89	0.44902	Titin Z (1);Ribonuclease H-like (1);	.	.	.	.	T	0.67316	0.2880	N	0.24115	0.695	0.80722	D	1	B;B	0.34329	0.099;0.449	B;B	0.37091	0.112;0.241	T	0.68450	-0.5405	9	0.87932	D	0	.	12.0991	0.53772	0.0:0.0:0.1438:0.8562	.	558;558	Q8WZ42;Q8WZ42-6	TITIN_HUMAN;.	G	558	ENSP00000343764:E558G;ENSP00000354117:E558G	ENSP00000343764:E558G	E	-	2	0	TTN	179363807	0.995000	0.38212	1.000000	0.80357	0.927000	0.56198	2.570000	0.45981	0.921000	0.36994	0.533000	0.62120	GAA		TCGA-FB-A545-01A-11D-A26I-08	TTN-019	PUTATIVE	basic	protein_coding	protein_coding	OTTHUMT00000460310.1	1	0	1	214	343	0	50		0	0	0	0	50	2		0	0	0	0	0	2	1	1.000000	213	337	0	50	2		0	0	0	0	50	2	-20.000000	1	1	0	0		1	2	2	4	2.275913	1	0.530000	3.130000	0.682925	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
TMEM198	130612	broad.mit.edu	37	2	220414568	220414568	+	Missense_Mutation	SNP	C	C	T			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr2:220414568C>T	ENST00000344458.2	+	6	1660	c.1075C>T	c.(1075-1077)Cgg>Tgg	p.R359W	RP11-256I23.1_ENST00000596829.1_RNA|MIR3132_ENST00000581997.1_RNA|TMEM198_ENST00000373883.3_Missense_Mutation_p.R359W			Q66K66	TM198_HUMAN	transmembrane protein 198			16		Renal(207;0.0376)			CCCCCCAGTGCGGGTATAGCC	0.622000																								0							SO:0001583	missense			ENST00000344458.2	1	1	hg19	CCDS33385.1	.	.	.	.	.	.	.	.	.	.	C	19.08	3.757344	0.69648	.	.	ENSG00000188760	ENST00000344458;ENST00000373883	.	.	.	5.1	5.1	0.69264	.	0.070539	0.56097	D	0.000030	T	0.34978	0.0916	N	0.14661	0.345	0.53005	D	0.999966	B	0.33022	0.394	B	0.25291	0.059	T	0.37267	-0.9713	9	0.87932	D	0	-11.0301	14.7067	0.69198	0.1454:0.8546:0.0:0.0	.	359	Q66K66	TM198_HUMAN	W	359	.	ENSP00000343507:R359W	R	+	1	2	TMEM198	220122812	1.000000	0.71417	1.000000	0.80357	0.744000	0.42396	2.741000	0.47426	2.824000	0.97209	0.655000	0.94253	CGG		TCGA-FB-A545-01A-11D-A26I-08	TMEM198-002	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000131063.1	1	0	1	190	426	0	80	0	4.899558e-01	1	4	0	80	2		0	0	0	0	0	2	1	1.000000	190	419	0	79	2		0	0	0	0	80	2	-20.000000	1	1	121412	2	36	1	2	2	4	2.275913	1	0.530000	3.130000	0.682925	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
UNC50	25972	broad.mit.edu	37	2	99226308	99226308	+	Missense_Mutation	SNP	C	C	T			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08			C	T	C	C		Valid	Somatic	Phase_I	WXS	RNA			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr2:99226308C>T	ENST00000357765.2	+	2	238	c.86C>T	c.(85-87)gCg>gTg	p.A29V	COA5_ENST00000483527.1_5'Flank|COA5_ENST00000328709.3_5'Flank|UNC50_ENST00000409347.1_Missense_Mutation_p.A46V|UNC50_ENST00000409975.1_Missense_Mutation_p.A46V|COA5_ENST00000409997.1_5'Flank	NM_014044.5	NP_054763.2	Q53HI1	UNC50_HUMAN	unc-50 homolog (C. elegans)			10					ACAGCCGGAGCGAAACGCTAC	0.493000																								0							SO:0001583	missense			ENST00000357765.2	1	1	hg19	CCDS2035.1	.	.	.	.	.	.	.	.	.	.	C	27.2	4.810691	0.90707	.	.	ENSG00000115446	ENST00000357765;ENST00000409975;ENST00000409347	.	.	.	5.06	5.06	0.68205	.	0.153865	0.56097	D	0.000026	T	0.70727	0.3257	L	0.58810	1.83	0.80722	D	1	D	0.67145	0.996	P	0.55345	0.774	T	0.69551	-0.5115	9	0.35671	T	0.21	-29.8512	17.7675	0.88482	0.0:1.0:0.0:0.0	.	29	Q53HI1	UNC50_HUMAN	V	29;46;46	.	ENSP00000350409:A29V	A	+	2	0	UNC50	98592740	1.000000	0.71417	0.999000	0.59377	0.989000	0.77384	5.595000	0.67563	2.505000	0.84491	0.591000	0.81541	GCG		TCGA-FB-A545-01A-11D-A26I-08	UNC50-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000252987.1	1	0	1	500	1002	0	142	1	1	20	45	0	142	2		0	0	0	0	0	2	1	1.000000	498	998	0	142	2		0	0	0	0	142	2	-20.000000	1	1	0	0		1	2	2	4	2.367309	1	0.530000	3.130000	0.692810	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
IFT122	55764	broad.mit.edu	37	3	129195581	129195581	+	Missense_Mutation	SNP	C	C	T			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr3:129195581C>T	ENST00000348417.2	+	11	1161	c.1084C>T	c.(1084-1086)Cgc>Tgc	p.R362C	IFT122_ENST00000440957.2_Missense_Mutation_p.R153C|IFT122_ENST00000349441.2_Missense_Mutation_p.R251C|IFT122_ENST00000431818.2_Missense_Mutation_p.R212C|IFT122_ENST00000347300.2_Missense_Mutation_p.R303C|IFT122_ENST00000507564.1_Missense_Mutation_p.R354C|IFT122_ENST00000504021.1_Missense_Mutation_p.R256C|IFT122_ENST00000296266.3_Missense_Mutation_p.R413C	NM_052989.1	NP_443715.1	Q9HBG6	IF122_HUMAN	intraflagellar transport 122			52					TTACAAGGACCGCTATGCCTA	0.537000																								0							SO:0001583	missense			ENST00000348417.2	1	1	hg19	CCDS3061.1	.|.	.|.	.|.	.|.	.|.	.|.	.|.	.|.	.|.	.|.	C|C	29.9|29.9	5.043912|5.043912	0.93685|0.93685	.|.	.|.	ENSG00000163913|ENSG00000163913	ENST00000512157;ENST00000515783|ENST00000347300;ENST00000296266;ENST00000507564;ENST00000454840;ENST00000431818;ENST00000504021;ENST00000349441;ENST00000348417;ENST00000446384;ENST00000440957	.|T;T;T;D;T;T;T;D	.|0.90261	.|0.5;-0.16;-0.04;-2.64;0.65;0.63;0.47;-2.64	5.65|5.65	5.65|5.65	0.86999|0.86999	.|.	.|0.000000	.|0.85682	.|D	.|0.000000	D|D	0.96012|0.96012	0.8701|0.8701	M|M	0.86178|0.86178	2.8|2.8	0.80722|0.80722	D|D	1|1	.|D;D;D;D;D;D;D;D	.|0.89917	.|1.0;1.0;0.997;0.986;0.986;0.992;1.0;1.0	.|D;D;P;P;P;P;D;D	.|0.85130	.|0.997;0.988;0.755;0.568;0.568;0.805;0.993;0.997	D|D	0.95987|0.95987	0.8982|0.8982	5|10	.|0.66056	.|D	.|0.02	-24.8899|-24.8899	19.7278|19.7278	0.96172|0.96172	0.0:1.0:0.0:0.0|0.0:1.0:0.0:0.0	.|.	.|153;354;256;202;251;303;362;413	.|E9PDG2;E7EQF4;B4DEY9;B4DPW7;Q9BTY4;Q9HBG6-3;Q9HBG6;G3XAB1	.|.;.;.;.;.;.;IF122_HUMAN;.	L|C	240;188|303;413;354;303;212;256;251;362;202;153	.|ENSP00000323973:R303C;ENSP00000296266:R413C;ENSP00000425536:R354C;ENSP00000410946:R212C;ENSP00000422179:R256C;ENSP00000324165:R251C;ENSP00000324005:R362C;ENSP00000401569:R153C	.|ENSP00000296266:R413C	P|R	+|+	2|1	0|0	IFT122|IFT122	130678271|130678271	1.000000|1.000000	0.71417|0.71417	0.994000|0.994000	0.49952|0.49952	0.950000|0.950000	0.60333|0.60333	7.440000|7.440000	0.80464|0.80464	2.656000|2.656000	0.90262|0.90262	0.591000|0.591000	0.81541|0.81541	CCG|CGC		TCGA-FB-A545-01A-11D-A26I-08	IFT122-003	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000355852.1	1	0	1	181	252	0	65	1	6.928083e-01	2	3	0	65	2		0	0	0	0	0	2	1	1.000000	180	251	0	65	2		0	0	0	0	65	2	-3.318794	1	1	121412	6	42	1	1	2	3	1.984701	1	0.530000	3.130000	0.628458	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
SATB1	6304	broad.mit.edu	37	3	18462359	18462359	+	Missense_Mutation	SNP	T	T	G			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr3:18462359T>G	ENST00000338745.6	-	2	1835	c.101A>C	c.(100-102)gAg>gCg	p.E34A	SATB1_ENST00000454909.2_Missense_Mutation_p.E34A|SATB1_ENST00000417717.2_Missense_Mutation_p.E34A|SATB1_ENST00000493952.2_Missense_Mutation_p.E34A|TBC1D5_ENST00000414318.2_Intron	NM_002971.4	NP_002962.1	Q01826	SATB1_HUMAN	SATB homeobox 1			32					CCCGTTCTGCTCCAGGCGGGC	0.507000																								0							SO:0001583	missense			ENST00000338745.6	1	1	hg19	CCDS2631.1	.	.	.	.	.	.	.	.	.	.	T	27.1	4.796438	0.90453	.	.	ENSG00000182568	ENST00000338745;ENST00000454909;ENST00000417717;ENST00000440737;ENST00000452260;ENST00000415069;ENST00000457005;ENST00000414509;ENST00000444341	T;T;T;T;T;T;T;T;T	0.58940	0.3;0.3;0.3;0.3;0.3;0.3;0.3;0.3;0.3	5.83	5.83	0.93111	.	0.000000	0.85682	D	0.000000	T	0.70962	0.3284	L	0.50333	1.59	0.80722	D	1	D;D	0.71674	0.998;0.997	D;D	0.69142	0.962;0.955	T	0.73616	-0.3926	10	0.87932	D	0	-13.3153	16.2147	0.82198	0.0:0.0:0.0:1.0	.	34;34	Q01826-2;Q01826	.;SATB1_HUMAN	A	34	ENSP00000341024:E34A;ENSP00000399708:E34A;ENSP00000399518:E34A;ENSP00000402982:E34A;ENSP00000406727:E34A;ENSP00000390529:E34A;ENSP00000398072:E34A;ENSP00000408871:E34A;ENSP00000391344:E34A	ENSP00000341024:E34A	E	-	2	0	SATB1	18437363	1.000000	0.71417	1.000000	0.80357	0.986000	0.74619	7.698000	0.84413	2.231000	0.72958	0.460000	0.39030	GAG		TCGA-FB-A545-01A-11D-A26I-08	SATB1-001	KNOWN	alternative_5_UTR|basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000252138.4	1	0	1	377	517	0	93	1	9.644280e-01	5	5	0	93	2		0	0	0	0	0	2	1	1.000000	374	516	0	92	2		0	0	0	0	93	2	-20.000000	1	1	0	0		1	1	2	3	1.963190	1	0.530000	3.130000	0.627679	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
DLEC1	9940	broad.mit.edu	37	3	38087134	38087134	+	Missense_Mutation	SNP	T	T	C			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr3:38087134T>C	ENST00000308059.6	+	2	533	c.512T>C	c.(511-513)aTg>aCg	p.M171T	DLEC1_ENST00000452631.2_Missense_Mutation_p.M171T|DLEC1_ENST00000346219.3_Missense_Mutation_p.M171T					deleted in lung and esophageal cancer 1			51					GAGCGGGTCATGAGCCAGGCT	0.532000																								0							SO:0001583	missense			ENST00000308059.6	1	1	hg19	CCDS2672.2	.	.	.	.	.	.	.	.	.	.	T	3.529	-0.096060	0.07010	.	.	ENSG00000008226	ENST00000308059;ENST00000346219;ENST00000452631	T;T;T	0.04454	3.64;3.62;3.86	4.8	1.09	0.20402	.	0.831243	0.11038	N	0.606427	T	0.03520	0.0101	L	0.27053	0.805	0.09310	N	1	B;B;B	0.09022	0.0;0.002;0.0	B;B;B	0.09377	0.004;0.004;0.004	T	0.47824	-0.9087	10	0.21540	T	0.41	-1.8806	6.245	0.20811	0.0:0.3221:0.0:0.6779	.	171;171;171	F8W6T4;Q9Y238-3;Q9Y238	.;.;DLEC1_HUMAN	T	171	ENSP00000308597:M171T;ENSP00000315914:M171T;ENSP00000410427:M171T	ENSP00000308597:M171T	M	+	2	0	DLEC1	38062138	0.000000	0.05858	0.000000	0.03702	0.046000	0.14306	-0.141000	0.10327	0.040000	0.15660	0.533000	0.62120	ATG		TCGA-FB-A545-01A-11D-A26I-08	DLEC1-001	KNOWN	basic|appris_candidate|CCDS	protein_coding	protein_coding	OTTHUMT00000253745.3	1	0	1	167	232	0	65		0	0	0	0	65	2		0	0	0	0	0	2	1	1.000000	165	232	0	64	2		0	0	0	0	65	2	-20.000000	1	1	0	0		1	1	2	3	1.963190	1	0.530000	3.130000	0.627679	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
MST1R	4486	broad.mit.edu	37	3	49936017	49936017	+	Missense_Mutation	SNP	C	C	T			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08			C	T	C	C		Valid	Somatic	Phase_I	WXS	RNA			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr3:49936017C>T	ENST00000296474.3	-	4	1680	c.1653G>A	c.(1651-1653)atG>atA	p.M551I	MST1R_ENST00000344206.4_Missense_Mutation_p.M551I|CTD-2330K9.2_ENST00000435478.1_RNA	NM_002447.2	NP_002438	Q04912	RON_HUMAN	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)			37					GCTGGCCGCACATGTTCCCAC	0.602000																								0							SO:0001583	missense			ENST00000296474.3	1	1	hg19	CCDS2807.1	.	.	.	.	.	.	.	.	.	.	C	6.278	0.419493	0.11928	.	.	ENSG00000164078	ENST00000296474;ENST00000344206	T;T	0.40476	1.03;3.05	5.78	2.89	0.33648	.	0.728645	0.13917	N	0.353825	T	0.26122	0.0637	N	0.26042	0.785	0.23572	N	0.997382	B;B;B;B	0.19817	0.039;0.012;0.004;0.003	B;B;B;B	0.14023	0.009;0.01;0.007;0.001	T	0.13335	-1.0513	10	0.54805	T	0.06	-3.2634	3.9856	0.09514	0.1046:0.5013:0.2391:0.155	.	445;551;551;551	Q04912-4;Q04912-6;Q04912-5;Q04912	.;.;.;RON_HUMAN	I	551	ENSP00000296474:M551I;ENSP00000341325:M551I	ENSP00000296474:M551I	M	-	3	0	MST1R	49911021	0.000000	0.05858	0.890000	0.34922	0.746000	0.42486	-0.224000	0.09164	1.452000	0.47756	0.491000	0.48974	ATG		TCGA-FB-A545-01A-11D-A26I-08	MST1R-001	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000345403.1	1	0	1	209	336	0	78	1	1	38	38	0	78	2		0	0	0	0	0	2	1	1.000000	206	329	0	78	2		0	0	0	0	78	2	-20.000000	1	1	0	0		1	1	2	3	1.919557	1	0.530000	3.130000	0.625319	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
ATP8A1	10396	broad.mit.edu	37	4	42580334	42580334	+	Silent	SNP	G	G	A			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr4:42580334G>A	ENST00000381668.5	-	12	1302	c.1071C>T	c.(1069-1071)atC>atT	p.I357I	ATP8A1_ENST00000264449.10_Silent_p.I357I	NM_006095.2	NP_006086.1	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1			51				Phosphatidylserine(DB00144)	CCAATAAGCTGATAGGAATGA	0.348000																								0							SO:0001819	synonymous_variant			ENST00000381668.5	1	1	hg19	CCDS3466.1																																																																																				TCGA-FB-A545-01A-11D-A26I-08	ATP8A1-001	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000216861.2	1	0	1	220	326	0	52	0	0	0	1	0	52	2		0	0	0	0	0	2	1	1.000000	219	323	0	52	2		0	0	0	0	52	2	-20.000000	1	1	0	0		1	1	2	3	2.029622	1	0.530000	3.130000	0.628458	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
GAK	2580	broad.mit.edu	37	4	864531	864531	+	Missense_Mutation	SNP	C	C	T			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr4:864531C>T	ENST00000314167.4	-	19	2326	c.2216G>A	c.(2215-2217)cGg>cAg	p.R739Q	GAK_ENST00000511163.1_Missense_Mutation_p.R660Q|GAK_ENST00000509566.1_5'UTR	NM_005255.2	NP_005246.2	O14976	GAK_HUMAN	cyclin G associated kinase			39					CTGCTCCTCCCGGCTGGAAAA	0.562000																								0							SO:0001583	missense			ENST00000314167.4	1	1	hg19	CCDS3340.1	.	.	.	.	.	.	.	.	.	.	C	20.7	4.037804	0.75617	0.0	1.16E-4	ENSG00000178950	ENST00000314167;ENST00000511163	T;T	0.77358	-0.65;-1.09	5.62	5.62	0.85841	.	0.125201	0.56097	D	0.000034	T	0.75700	0.3885	L	0.57536	1.79	0.80722	D	1	P;P;P;P	0.51791	0.791;0.948;0.791;0.898	B;P;B;B	0.44897	0.126;0.463;0.126;0.27	T	0.72567	-0.4254	10	0.12103	T	0.63	-23.5808	17.155	0.86788	0.0:1.0:0.0:0.0	.	660;660;739;635	Q5U4P5;E9PGR2;O14976;Q59HA5	.;.;GAK_HUMAN;.	Q	739;660	ENSP00000314499:R739Q;ENSP00000421361:R660Q	ENSP00000314499:R739Q	R	-	2	0	GAK	854531	1.000000	0.71417	0.965000	0.40720	0.997000	0.91878	7.656000	0.83736	2.643000	0.89663	0.655000	0.94253	CGG		TCGA-FB-A545-01A-11D-A26I-08	GAK-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000239188.1	0	0	0	17	473	0	61	1	7.666833e-01	2	77	0	61	2		0	0	0	0	0	2	1	0.999965	16	471	0	61	2		0	0	0	0	61	2	-2.374798	0	1	121412	3	36	1	1	2	3	2.001705	1	0.530000	3.130000	0.628458	0.160000	0.090000	0.260000	0.160000	0.174426	0.160000	0	0.120000	0.210000
ZNF354A	6940	broad.mit.edu	37	5	178139093	178139093	+	Missense_Mutation	SNP	G	G	A			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08			G	A	G	G		Valid	Somatic	Phase_I	WXS	RNA			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr5:178139093G>A	ENST00000335815.2	-	5	1983	c.1786C>T	c.(1786-1788)Cat>Tat	p.H596Y		NM_005649.2	NP_005640.2	O60765	Z354A_HUMAN	zinc finger protein 354A			19	all_cancers(89;0.000536)|Renal(175;0.000159)|all_epithelial(37;0.000221)|Lung NSC(126;0.00308)|all_lung(126;0.00536)	all_cancers(40;0.0452)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		ATTTTATAATGATTAGTAAGG	0.373000																								0							SO:0001583	missense			ENST00000335815.2	1	1	hg19	CCDS4438.1	.	.	.	.	.	.	.	.	.	.	G	9.811	1.183252	0.21870	.	.	ENSG00000169131	ENST00000335815	D	0.96168	-3.93	4.47	4.47	0.54385	Zinc finger, C2H2-like (1);Zinc finger, C2H2 (3);Zinc finger, C2H2-type/integrase, DNA-binding (1);	.	.	.	.	D	0.97996	0.9340	M	0.93420	3.415	0.42876	D	0.994154	D	0.76494	0.999	D	0.63703	0.917	D	0.99133	1.0853	9	0.87932	D	0	-12.4023	14.9914	0.71390	0.0:0.0:1.0:0.0	.	596	O60765	Z354A_HUMAN	Y	596	ENSP00000337122:H596Y	ENSP00000337122:H596Y	H	-	1	0	ZNF354A	178071699	.	.	0.998000	0.56505	0.200000	0.23975	.	.	2.477000	0.83638	0.655000	0.94253	CAT		TCGA-FB-A545-01A-11D-A26I-08	ZNF354A-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000253481.1	1	0	1	138	119	0	35	1	9.965874e-01	6	5	0	35	2		0	0	0	0	0	2	1	1.000000	137	118	0	35	2		0	0	0	0	35	2	-20.000000	1	1	0	0		1	0	2	2	1.583779	1	0.530000	3.130000	0.530000	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
CYB5R4	51167	broad.mit.edu	37	6	84649843	84649843	+	Missense_Mutation	SNP	C	C	T			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08			C	T	C	C		Valid	Somatic	Phase_I	WXS	RNA			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr6:84649843C>T	ENST00000369681.5	+	13	1317	c.1177C>T	c.(1177-1179)Ctc>Ttc	p.L393F	CYB5R4_ENST00000479164.1_3'UTR	NM_016230.3	NP_057314.2	Q7L1T6	NB5R4_HUMAN	cytochrome b5 reductase 4			23		all_cancers(76;7e-07)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00128)			ATTAGAAGATCTCTTTTTGTT	0.348000													Esophageal Squamous(86;1289 1332 25971 40349 52675)											0							SO:0001583	missense			ENST00000369681.5	1	1	hg19	CCDS5000.2	.	.	.	.	.	.	.	.	.	.	C	20.0	3.930026	0.73327	.	.	ENSG00000065615	ENST00000369681	D	0.95412	-3.7	5.93	5.93	0.95920	.	0.057149	0.64402	D	0.000001	D	0.95146	0.8427	M	0.78344	2.41	0.80722	D	1	P	0.48294	0.908	P	0.46885	0.53	D	0.95436	0.8521	10	0.72032	D	0.01	.	15.4232	0.75031	0.0:0.8614:0.1385:0.0	.	393	Q7L1T6	NB5R4_HUMAN	F	393	ENSP00000358695:L393F	ENSP00000358695:L393F	L	+	1	0	CYB5R4	84706562	1.000000	0.71417	1.000000	0.80357	0.934000	0.57294	2.088000	0.41663	2.805000	0.96524	0.655000	0.94253	CTC		TCGA-FB-A545-01A-11D-A26I-08	CYB5R4-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000041362.4	1	0	1	207	179	0	48	1	9.936827e-01	6	4	0	48	2		0	0	0	0	0	2	1	1.000000	207	176	0	47	2		0	0	0	0	48	2	-20.000000	1	1	0	0		1	0	2	2	1.573032	1	0.530000	3.130000	0.530000	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
KLHL38	340359	broad.mit.edu	37	8	124664070	124664070	+	Missense_Mutation	SNP	C	C	T			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr8:124664070C>T	ENST00000325995.7	-	1	1120	c.1097G>A	c.(1096-1098)gGg>gAg	p.G366E	CTD-2552K11.2_ENST00000524355.1_RNA	NM_001081675.2	NP_001075144.2	Q2WGJ6	KLH38_HUMAN	kelch-like family member 38			38					CATGGGCTCCCCCAGCCTCCA	0.572000																								0							SO:0001583	missense			ENST00000325995.7	1	1	hg19	CCDS43766.1	.	.	.	.	.	.	.	.	.	.	C	15.75	2.924416	0.52653	.	.	ENSG00000175946	ENST00000325995	T	0.67345	-0.26	5.18	4.3	0.51218	Kelch-type beta propeller (1);	0.153290	0.56097	D	0.000021	T	0.67411	0.2890	M	0.83012	2.62	0.33365	D	0.572771	B	0.17268	0.021	B	0.17098	0.017	T	0.72988	-0.4124	10	0.51188	T	0.08	.	10.1655	0.42877	0.1802:0.6871:0.1327:0.0	.	366	Q2WGJ6	KLH38_HUMAN	E	366	ENSP00000321475:G366E	ENSP00000321475:G366E	G	-	2	0	KLHL38	124733251	0.997000	0.39634	1.000000	0.80357	0.976000	0.68499	3.244000	0.51399	1.278000	0.44430	0.561000	0.74099	GGG		TCGA-FB-A545-01A-11D-A26I-08	KLHL38-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000381288.1	1	0	1	199	436	0	79	0	0	0	1	0	79	2		0	0	0	0	0	2	1	1.000000	200	436	0	77	2		0	0	0	0	79	2	-13.868340	1	1	0	0		1	2	2	4	2.347604	1	0.530000	3.130000	0.692810	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
KCNT1	57582	broad.mit.edu	37	9	138641963	138641963	+	Missense_Mutation	SNP	G	G	A			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr9:138641963G>A	ENST00000263604.3	+	3	217	c.217G>A	c.(217-219)Gtc>Atc	p.V73I	KCNT1_ENST00000486577.2_Missense_Mutation_p.V53I|KCNT1_ENST00000488444.2_Missense_Mutation_p.V73I|KCNT1_ENST00000298480.5_Missense_Mutation_p.V92I|KCNT1_ENST00000371757.2_Missense_Mutation_p.V92I|KCNT1_ENST00000491806.2_Missense_Mutation_p.V59I|KCNT1_ENST00000487664.1_Missense_Mutation_p.V44I|KCNT1_ENST00000490355.2_Missense_Mutation_p.V73I			Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1			50		Myeloproliferative disorder(178;0.0821)			GGAGTTCTACGTCAACGAGAA	0.607000																								0							SO:0001583	missense			ENST00000263604.3	0	1	hg19		.	.	.	.	.	.	.	.	.	.	g	22.2	4.255822	0.80135	.	.	ENSG00000107147	ENST00000487664;ENST00000298480;ENST00000371757;ENST00000473941;ENST00000486577;ENST00000491806;ENST00000488444;ENST00000490355;ENST00000263604	T;T;T;T;T	0.50548	1.75;1.66;1.66;0.74;1.72	4.18	4.18	0.49190	.	0.000000	0.64402	D	0.000002	T	0.59622	0.2207	M	0.72353	2.195	0.80722	D	1	D;D	0.58268	0.97;0.982	P;P	0.53006	0.522;0.715	T	0.66630	-0.5875	10	0.59425	D	0.04	-9.5267	15.8483	0.78907	0.0:0.0:1.0:0.0	.	92;44	B9EGP2;G5E9V0	.;.	I	44;92;92;39;53;59;73;73;73	ENSP00000417851:V44I;ENSP00000298480:V92I;ENSP00000360822:V92I;ENSP00000420764:V39I;ENSP00000263604:V73I	ENSP00000263604:V73I	V	+	1	0	KCNT1	137781784	1.000000	0.71417	0.951000	0.38953	0.904000	0.53231	9.449000	0.97603	2.053000	0.61076	0.561000	0.74099	GTC		TCGA-FB-A545-01A-11D-A26I-08	KCNT1-201	KNOWN	basic|appris_candidate	protein_coding	protein_coding		0	0	0	5	223	0	23		0	0	0	0	23	2		0	0	0	0	0	2	1	0.937506	5	222	0	23	2		0	0	0	0	23	2	-6.385526	1	0	121400	1	30	1	1	2	3	2.018806	1	0.530000	3.130000	0.624526	0.110000	0.030000	1.000000	0.110000	0.156207	0.110000	0	0.060000	0.180000
AQP7	364	broad.mit.edu	37	9	33386077	33386077	+	Missense_Mutation	SNP	C	C	T			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chr9:33386077C>T	ENST00000537089.1	-	5	565	c.247G>A	c.(247-249)Gag>Aag	p.E83K	AQP7_ENST00000541274.1_Intron|AQP7_ENST00000377425.4_Missense_Mutation_p.E118K|AQP7_ENST00000539936.1_Missense_Mutation_p.E175K			O14520	AQP7_HUMAN	aquaporin 7			17			LUSC - Lung squamous cell carcinoma(29;0.00788)		CCACTGACCTCATTCAGGAAG	0.592000																								0							SO:0001583	missense			ENST00000537089.1	0	1	hg19		.	.	.	.	.	.	.	.	.	.	N	24.0	4.485614	0.84854	.	.	ENSG00000165269	ENST00000537089;ENST00000379507;ENST00000447660;ENST00000297988;ENST00000377425;ENST00000439678;ENST00000379506;ENST00000539936;ENST00000379503	T;T;T;T;T;T;T;T;T	0.29917	1.55;1.55;1.55;1.55;1.55;1.55;1.55;1.55;1.55	3.98	3.98	0.46160	Aquaporin-like (2);	0.106561	0.64402	D	0.000003	T	0.67618	0.2912	H	0.98238	4.18	0.44789	D	0.997793	P;D;P;D	0.63046	0.9;0.992;0.948;0.982	P;D;P;P	0.70227	0.643;0.968;0.771;0.752	T	0.78526	-0.2170	10	0.87932	D	0	-26.5908	11.903	0.52694	0.0:1.0:0.0:0.0	.	174;175;118;175	Q5T5M0;B7Z4U2;Q6P5T0;O14520	.;.;.;AQP7_HUMAN	K	83;174;43;175;118;83;174;175;111	ENSP00000441619:E83K;ENSP00000368821:E174K;ENSP00000412868:E43K;ENSP00000297988:E175K;ENSP00000396111:E118K;ENSP00000410138:E83K;ENSP00000368820:E174K;ENSP00000439534:E175K;ENSP00000368817:E111K	ENSP00000297988:E175K	E	-	1	0	AQP7	33376077	0.998000	0.40836	0.999000	0.59377	0.984000	0.73092	1.723000	0.38053	2.507000	0.84556	0.645000	0.84053	GAG		TCGA-FB-A545-01A-11D-A26I-08	AQP7-202	KNOWN	basic	protein_coding	protein_coding		0	0	0	12	379	0	51	0	0	0	1	0	51	2		0	0	0	0	0	2	1	0.998849	8	364	0	50	2		0	0	0	0	51	2	-2.565206	1	1	0	0		1	0	2	2	1.520844	1	0.530000	3.130000	0.530000	0.110000	0.050000	0.190000	0.120000	0.124526	0.110000	0	0.080000	0.160000
COL4A5	1287	broad.mit.edu	37	X	107925082	107925082	+	Missense_Mutation	SNP	G	G	T			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chrX:107925082G>T	ENST00000361603.2	+	45	4406	c.4162G>T	c.(4162-4164)Ggt>Tgt	p.G1388C	COL4A5_ENST00000328300.6_Missense_Mutation_p.G1394C	NM_000495.4	NP_000486.1	P29400	CO4A5_HUMAN	collagen, type IV, alpha 5			99					TGGGCTAAAGGGTCTACCAGG	0.458000									Alport syndrome with Diffuse Leiomyomatosis															0							SO:0001583	missense	Familial Cancer Database		ENST00000361603.2	1	1	hg19	CCDS14543.1	.	.	.	.	.	.	.	.	.	.	G	18.11	3.549782	0.65311	.	.	ENSG00000188153	ENST00000328300;ENST00000361603;ENST00000508186	D;D	0.97089	-4.24;-4.24	5.0	5.0	0.66597	.	0.000000	0.85682	D	0.000000	D	0.99089	0.9687	H	0.97587	4.035	0.80722	D	1	D;D	0.89917	1.0;1.0	D;D	0.97110	1.0;1.0	D	0.99236	1.0883	10	0.87932	D	0	.	17.7015	0.88296	0.0:0.0:1.0:0.0	.	1391;1388	E7EVY4;P29400	.;CO4A5_HUMAN	C	1394;1388;1394	ENSP00000331902:G1394C;ENSP00000354505:G1388C	ENSP00000331902:G1394C	G	+	1	0	COL4A5	107811738	1.000000	0.71417	1.000000	0.80357	0.444000	0.32077	8.937000	0.92936	2.196000	0.70406	0.506000	0.49869	GGT		TCGA-FB-A545-01A-11D-A26I-08	COL4A5-001	KNOWN	basic|CCDS	protein_coding	protein_coding	OTTHUMT00000057880.2	1	0	1	115	174	0	41	0	3.505188e-01	1	2	0	41	2		0	0	0	0	0	2	1	1.000000	115	174	0	41	2		0	0	0	0	41	2	-20.000000	1	1	0	0		1	0	1	1			0.530000	3.130000	0.530000	0.990000	0.990000	1.000000	1.000000	1.000000	0.990000	1	0.990000	1.000000
SPANXD	64648	broad.mit.edu	37	X	140785784	140785784	+	Silent	SNP	T	T	A			TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chrX:140785784T>A	ENST00000370515.3	-	2	465	c.132A>T	c.(130-132)acA>acT	p.T44T		NM_032417.2|NM_145665.1	NP_115793.1|NP_663698.1	Q9BXN6	SPNXD_HUMAN	SPANX family, member D			9	Acute lymphoblastic leukemia(192;7.65e-05)				AGGACTCAGATGTTTTTAGTT	0.478000																								0							SO:0001819	synonymous_variant			ENST00000370515.3	1	1	hg19	CCDS14675.1																																																																																				TCGA-FB-A545-01A-11D-A26I-08	SPANXD-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000058598.1	0	0	0	27	1117	0	181		0	0	0	0	181	2		0	0	0	0	0	2	1	1.000000	27	1076	0	182	2		0	0	0	0	181	2	-3.195774	1	1	0	0		1	0	1	1			0.530000	3.130000	0.530000	0.080000	0.050000	0.130000	0.090000	0.092115	0.080000	0	0.060000	0.110000
MECP2	4204	broad.mit.edu	37	X	153296531	153296531	+	Missense_Mutation	SNP	G	G	A	rs61750225	byFrequency	TCGA-FB-A545-01A-11D-A26I-08	TCGA-FB-A545-10A-01D-A26I-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b6a5fc11-2047-4c23-b325-4cd21131fdf6	01505e81-dfca-433f-80ac-458881d3d217	g.chrX:153296531G>A	ENST00000303391.6	-	4	997	c.748C>T	c.(748-750)Cgc>Tgc	p.R250C	MECP2_ENST00000453960.2_Missense_Mutation_p.R262C|MECP2_ENST00000407218.1_3'UTR|MECP2_ENST00000460227.1_5'Flank	NM_004992.3	NP_004983.1	P51608	MECP2_HUMAN	methyl CpG binding protein 2			23	all_cancers(53;3.7e-16)|all_epithelial(53;3.44e-10)|all_lung(58;2.06e-07)|Lung NSC(58;2.72e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)				CTGCCGGGGCGTTTGATCACC	0.642000																								0		GRCh37	CM023415	MECP2	M	rs141382970	SO:0001583	missense			ENST00000303391.6	1	1	hg19	CCDS14741.1	.	.	.	.	.	.	.	.	.	.	G	17.11	3.305397	0.60305	0.0	1.49E-4	ENSG00000169057	ENST00000303391;ENST00000545451;ENST00000453960;ENST00000369964	D;D	0.93019	-3.13;-3.15	5.48	5.48	0.80851	.	0.000000	0.85682	D	0.000000	D	0.94089	0.8105	L	0.32530	0.975	0.80722	D	1	D;D	0.89917	1.0;1.0	D;D	0.83275	0.996;0.99	D	0.94482	0.7694	10	0.87932	D	0	-14.0476	12.1758	0.54184	0.0:0.0:0.8291:0.1709	.	262;250	P51608-2;P51608	.;MECP2_HUMAN	C	250;250;262;250	ENSP00000301948:R250C;ENSP00000395535:R262C	ENSP00000301948:R250C	R	-	1	0	MECP2	152949725	1.000000	0.71417	0.988000	0.46212	0.974000	0.67602	4.846000	0.62860	2.285000	0.76669	0.600000	0.82982	CGC		TCGA-FB-A545-01A-11D-A26I-08	MECP2-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000061144.1	1	0	0	34	691	0	160	0	4.242639e-01	0	30	0	160	2		0	0	0	0	0	2	1	1.000000	33	677	0	159	2		0	0	0	0	160	2	-5.633248	1	1	121410	3	40	1	0	1	1			0.530000	3.130000	0.530000	0.170000	0.120000	0.240000	0.180000	0.181434	0.170000	0	0.140000	0.210000
