Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	ACHILLES_Lineage_Results_Top_Genes	CGC_CancerGermlineMut	CGC_CancerMolecularGenetics	CGC_CancerSomaticMut	CGC_CancerSyndrome	CGC_Chr	CGC_ChrBand	CGC_GeneID	CGC_Name	CGC_OtherGermlineMut	CGC_TissueType	COSMIC_n_overlapping_mutations	COSMIC_overlapping_mutation_descriptions	ClinVar_ASSEMBLY	ClinVar_HGMD_ID	ClinVar_SYM	ClinVar_TYPE	ClinVar_rs	Ensembl_so_accession	Ensembl_so_term	Familial_Cancer_Genes_Reference	Familial_Cancer_Genes_Synonym	annotation_transcript	bcgsc	broad	build	ccds_id	dbNSFP_1000Gp1_AC	dbNSFP_1000Gp1_AF	dbNSFP_1000Gp1_AFR_AC	dbNSFP_1000Gp1_AFR_AF	dbNSFP_1000Gp1_AMR_AC	dbNSFP_1000Gp1_AMR_AF	dbNSFP_1000Gp1_ASN_AC	dbNSFP_1000Gp1_ASN_AF	dbNSFP_1000Gp1_EUR_AC	dbNSFP_1000Gp1_EUR_AF	dbNSFP_Ancestral_allele	dbNSFP_CADD_phred	dbNSFP_CADD_raw	dbNSFP_CADD_raw_rankscore	dbNSFP_ESP6500_AA_AF	dbNSFP_ESP6500_EA_AF	dbNSFP_Ensembl_geneid	dbNSFP_Ensembl_transcriptid	dbNSFP_FATHMM_pred	dbNSFP_FATHMM_rankscore	dbNSFP_FATHMM_score	dbNSFP_GERP_NR	dbNSFP_GERP_RS	dbNSFP_GERP_RS_rankscore	dbNSFP_Interpro_domain	dbNSFP_LRT_Omega	dbNSFP_LRT_converted_rankscore	dbNSFP_LRT_pred	dbNSFP_LRT_score	dbNSFP_LR_pred	dbNSFP_LR_rankscore	dbNSFP_LR_score	dbNSFP_MutationAssessor_pred	dbNSFP_MutationAssessor_rankscore	dbNSFP_MutationAssessor_score	dbNSFP_MutationTaster_converted_rankscore	dbNSFP_MutationTaster_pred	dbNSFP_MutationTaster_score	dbNSFP_Polyphen2_HDIV_pred	dbNSFP_Polyphen2_HDIV_rankscore	dbNSFP_Polyphen2_HDIV_score	dbNSFP_Polyphen2_HVAR_pred	dbNSFP_Polyphen2_HVAR_rankscore	dbNSFP_Polyphen2_HVAR_score	dbNSFP_RadialSVM_pred	dbNSFP_RadialSVM_rankscore	dbNSFP_RadialSVM_score	dbNSFP_Reliability_index	dbNSFP_SIFT_converted_rankscore	dbNSFP_SIFT_pred	dbNSFP_SIFT_score	dbNSFP_SLR_test_statistic	dbNSFP_SiPhy_29way_logOdds	dbNSFP_SiPhy_29way_logOdds_rankscore	dbNSFP_SiPhy_29way_pi	dbNSFP_UniSNP_ids	dbNSFP_Uniprot_aapos	dbNSFP_Uniprot_acc	dbNSFP_Uniprot_id	dbNSFP_aaalt	dbNSFP_aapos	dbNSFP_aapos_FATHMM	dbNSFP_aapos_SIFT	dbNSFP_aaref	dbNSFP_cds_strand	dbNSFP_codonpos	dbNSFP_folddegenerate	dbNSFP_genename	dbNSFP_hg18_pos1coor	dbNSFP_phastCons100way_vertebrate	dbNSFP_phastCons100way_vertebrate_rankscore	dbNSFP_phastCons46way_placental	dbNSFP_phastCons46way_placental_rankscore	dbNSFP_phastCons46way_primate	dbNSFP_phastCons46way_primate_rankscore	dbNSFP_phyloP100way_vertebrate	dbNSFP_phyloP100way_vertebrate_rankscore	dbNSFP_phyloP46way_placental	dbNSFP_phyloP46way_placental_rankscore	dbNSFP_phyloP46way_primate	dbNSFP_phyloP46way_primate_rankscore	dbNSFP_refcodon	entrez_gene_id	external_id_capture	gencode_transcript_name	gencode_transcript_status	gencode_transcript_tags	gencode_transcript_type	gene_type	havana_transcript	hgsc	igv_bad	ucsc	t_alt_count	t_ref_count	n_alt_count	n_ref_count	validation_judgement_rna	validation_power_rna	validation_tumor_alt_count_rna	validation_tumor_ref_count_rna	validation_normal_alt_count_rna	validation_normal_ref_count_rna	min_val_count_rna	validation_judgement_targeted	validation_power_targeted	validation_tumor_alt_count_targeted	validation_tumor_ref_count_targeted	validation_normal_alt_count_targeted	validation_normal_ref_count_targeted	min_val_count_targeted	validation_judgement_localAssembly	validation_power_localAssembly	t_alt_count_localAssembly	t_ref_count_localAssembly	n_alt_count_localAssembly	n_ref_count_localAssembly	min_val_count_localAssembly	validation_judgement_KRAS	validation_power_KRAS	t_alt_count_KRAS	t_ref_count_KRAS	n_alt_count_KRAS	n_ref_count_KRAS	min_val_count_KRAS	pon_loglike	pon_pass_loglike	localAssembly_detected	ExAC_AN	ExAC_AC	ExAC_LQ	passExAC	SCNA_NA	SCNA_NB	SCNA_q_hat	SCNA_tau	IS_SCNA	purity	ploidy	dna_fraction_in_tumor	CCF_hat	CCF_CI95_low	CCF_CI95_high	CCF_mode	CCF_mean	CCF_median	clonal	CCF_CI_low	CCF_CI_high
KIF4B	285643	broad.mit.edu	37	5	154395466	154395466	+	Frame_Shift_Del	DEL	C	C	-			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr5:154395466delC	ENST00000435029.4	+	1	2207	c.2047delC	c.(2047-2049)caafs	p.Q683fs		NM_001099293.1	NP_001092763.1	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B			58	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)		CCGTAAGAGGCAATATGAGCT	0.423000																								0							SO:0001589	frameshift_variant			ENST00000435029.4	0	1	hg19	CCDS47324.1																																																																																				TCGA-RB-AA9M-01A-11D-A397-08	KIF4B-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000377478.1	1	0	0	32	567	0	96	0	0	0	0	0	0		0	0	0	0	0	0		1	1.000000	32	563	0	96	2	0	0	0	0	0	0		-5.981519	1	1	0	0		1	1	2	3	2.040345	0	0.100001	2	0.114610	0.990000	0.770000	1.000000	1.000000	0.974719	0.990000	1	0.940000	1.000000
C10orf90	118611	broad.mit.edu	37	10	128147750	128147750	+	Missense_Mutation	SNP	G	G	A			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr10:128147750G>A	ENST00000284694.7	-	6	1876	c.1756C>T	c.(1756-1758)Cgc>Tgc	p.R586C	C10orf90_ENST00000544758.1_Missense_Mutation_p.R683C|C10orf90_ENST00000480379.1_5'UTR|C10orf90_ENST00000356858.3_Missense_Mutation_p.R539C|C10orf90_ENST00000454341.1_Missense_Mutation_p.R489C	NM_001004298.2	NP_001004298.2	Q96M02	CJ090_HUMAN	chromosome 10 open reading frame 90			65		all_epithelial(44;4.51e-05)|all_lung(145;0.0068)|Lung NSC(174;0.0105)|Colorectal(57;0.0848)|all_neural(114;0.0936)|Breast(234;0.203)			TCTTGTGAGCGAGAAATGAAC	0.498000																								0							SO:0001583	missense			ENST00000284694.7	1	1	hg19	CCDS31310.1	.	.	.	.	.	.	.	.	.	.	G	21.500000	4.160951	0.782260	.	.	ENSG00000154493	ENST00000356858;ENST00000284694;ENST00000454341;ENST00000544758;ENST00000432642	T;T;T;T	0.29917	1.7;1.81;1.74;1.55	5.010000	5.010000	0.668630	.	0.000000	0.43919	D	0.000518	T	0.53965	0.1829	M	0.65498	2.005	0.807220	D	1.000000	D;D;D	0.89917	1.0;1.0;1.0	D;D;D	0.97110	1.0;1.0;0.998	T	0.56475	-0.7973	10	0.87932	D	0	-27.713	15.175300	0.729070	0.0:0.0:1.0:0.0	.	683;586;489	F5GZL2;Q96M02;Q96M02-2	.;CJ090_HUMAN;.	C	539;586;489;683;586	ENSP00000284694:R586C;ENSP00000398786:R489C;ENSP00000444369:R683C;ENSP00000405995:R586C	ENSP00000284694:R586C	R	-	1	0	C10orf90	128137740	1	0.714170	1	0.803570	0.977000	0.689770	6.049000	0.710530	2.595000	0.876830	0.655000	0.942530	CGC		TCGA-RB-AA9M-01A-11D-A397-08	C10orf90-201	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding		1	0	0	24	453	0	71		0	0	0	0	71	2		0	0	0	0	0	2	1	1.000000	22	449	0	71	2		0	0	0	0	0	2	-2.958988	1	1	121412	4	37	1	1	2	3	2.048307	0	0.100001	2	0.116349	0.990000	0.690000	1.000000	1.000000	0.954541	0.990000	1	0.870000	1.000000
MKI67	4288	broad.mit.edu	37	10	129906577	129906577	+	Missense_Mutation	SNP	G	G	A	rs117795868	by1000genomes	TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr10:129906577G>A	ENST00000368654.3	-	13	3902	c.3527C>T	c.(3526-3528)aCg>aTg	p.T1176M	MKI67_ENST00000368653.3_Missense_Mutation_p.T816M	NM_002417.4	NP_002408.3	P46013	KI67_HUMAN	marker of proliferation Ki-67			159		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)			TGGTTTGGGCGTAAGCATGGC	0.463000																								0							SO:0001583	missense			ENST00000368654.3	0	1	hg19	CCDS7659.1	1	4.578754578754579E-4	0	0.0	0	0.0	1	0.0017482517482517483	0	0.0	G	12.050000	1.822665	0.322370	.	.	ENSG00000148773	ENST00000368654;ENST00000368653;ENST00000537609	T;T	0.03301	3.98;3.98	2.740000	1.830000	0.252070	.	1.848640	0.03443	N	0.209516	T	0.15998	0.0385	M	0.72118	2.19	0.093100	N	1.000000	D;D;D	0.89917	1.0;1.0;1.0	D;D;D	0.78314	0.96;0.991;0.989	T	0.06058	-1.0848	10	0.52906	T	0.07	.	5.495500	0.167990	0.1565:0.0:0.8435:0.0	.	1175;816;1176	F5H4V4;P46013-2;P46013	.;.;KI67_HUMAN	M	1176;816;1175	ENSP00000357643:T1176M;ENSP00000357642:T816M	ENSP00000357642:T816M	T	-	2	0	MKI67	129796567	5.000000e-03	0.159910	2.000000e-03	0.105220	0.005000	0.049000	0.110000	0.154370	0.740000	0.326510	0.462000	0.415740	ACG		TCGA-RB-AA9M-01A-11D-A397-08	MKI67-001	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000050999.1	0	0	0	6	1014	0	140	0	2.300177e-03	0	10	0	140	2		0	0	0	0	0	2	1	0.964138	6	1006	0	140	2		0	0	0	0	0	2	-2.032788	0	1	121412	29	52	1	1	2	3	2.048307	0	0.100001	2	0.116349	0.140000	0.050000	1.000000	0.120000	0.332688	0.140000	0	0.080000	1.000000
RASSF4	83937	broad.mit.edu	37	10	45467292	45467292	+	Missense_Mutation	SNP	G	G	A	rs61759871		TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr10:45467292G>A	ENST00000340258.5	+	3	247	c.134G>A	c.(133-135)cGt>cAt	p.R45H	RASSF4_ENST00000374417.2_Missense_Mutation_p.R45H|C10orf10_ENST00000496638.1_Intron|RASSF4_ENST00000334940.6_Intron|RASSF4_ENST00000472561.1_3'UTR	NM_032023.3	NP_114412.2	Q8WYP3	RIN2_HUMAN	Ras association (RalGDS/AF-6) domain family member 4			16					CTGAGACACCGTGAGGTGAGC	0.522000																								0							SO:0001583	missense			ENST00000340258.5	0	1	hg19	CCDS7208.1	.	.	.	.	.	.	.	.	.	.	G	19.250000	3.792072	0.704520	0.0	3.49E-4	ENSG00000107551	ENST00000374417;ENST00000374414;ENST00000340258;ENST00000427758;ENST00000428466;ENST00000374411	T;T;T;T	0.29397	1.57;2.37;1.57;1.57	5.270000	5.270000	0.740610	.	0.312435	0.30446	N	0.009610	T	0.28896	0.0717	L	0.49640	1.575	0.807220	D	1.000000	B;B	0.28208	0.203;0.026	B;B	0.21151	0.033;0.008	T	0.03684	-1.1013	10	0.40728	T	0.16	-8.1958	14.764300	0.696260	0.0:0.0:1.0:0.0	rs61759871	136;45	Q59FL4;Q9H2L5	.;RASF4_HUMAN	H	45;45;45;45;38;136	ENSP00000363538:R45H;ENSP00000339692:R45H;ENSP00000409767:R45H;ENSP00000413468:R38H	ENSP00000339692:R45H	R	+	2	0	RASSF4	44787298	9.990000e-01	0.422020	9.990000e-01	0.593770	0.615000	0.374170	2.358000	0.441340	2.632000	0.892090	0.655000	0.942530	CGT		TCGA-RB-AA9M-01A-11D-A397-08	RASSF4-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000047745.2	1	0	0	17	223	1	37	0	1.464338e-01	1	76	1	37	9		0	0	0	0	0	2	0	0.346423	17	220	1	36	20		0	0	0	0	0	2	-10.889140	1	1	121400	15	40	1	1	2	3	2.036269	0	0.100001	2	0.113738	0.990000	0.900000	1.000000	1.000000	0.994285	0.990000	1	0.990000	1.000000
C2CD2L	9854	broad.mit.edu	37	11	118984833	118984833	+	Missense_Mutation	SNP	C	C	T	rs148221836	by1000genomes	TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr11:118984833C>T	ENST00000528586.1	+	9	981	c.911C>T	c.(910-912)gCg>gTg	p.A304V	C2CD2L_ENST00000336702.3_Missense_Mutation_p.A557V			O14523	C2C2L_HUMAN	C2CD2-like	p.A557V(2)		13					CTGGGCTATGCGGCATCCCTG	0.612000																								2	Substitution - Missense(2)						SO:0001583	missense			ENST00000528586.1	0	1	hg19		1	4.578754578754579E-4	0	0.0	0	0.0	1	0.0017482517482517483	0	0.0	C	24.600000	4.548263	0.861270	.	.	ENSG00000172375	ENST00000336702;ENST00000528586	T;T	0.49432	0.78;0.78	5.110000	3.200000	0.367480	.	0.000000	0.85682	D	0.000000	T	0.61438	0.2347	M	0.61703	1.905	0.481350	D	0.999593	D;D	0.89917	1.0;1.0	D;D	0.87578	0.998;0.998	T	0.59490	-0.7445	10	0.46703	T	0.11	1.7815	9.464600	0.388040	0.1429:0.7824:0.0:0.0747	.	556;557	O14523;O14523-2	C2C2L_HUMAN;.	V	557;304	ENSP00000338885:A557V;ENSP00000433600:A304V	ENSP00000338885:A557V	A	+	2	0	C2CD2L	118490043	9.960000e-01	0.388240	9.830000e-01	0.444330	0.991000	0.796840	3.316000	0.519600	0.813000	0.343500	0.655000	0.942530	GCG		TCGA-RB-AA9M-01A-11D-A397-08	C2CD2L-003	PUTATIVE	basic|exp_conf	protein_coding	protein_coding	OTTHUMT00000388199.2	0	0	0	6	655	0	107	0	1.031172e-01	0	50	0	107	2		0	0	0	0	0	2	1	0.964258	6	650	0	106	2		0	0	0	0	0	2	-1.684191	0	1	121412	5	40	1	1	2	3	2.032382	0	0.100001	2	0.112865	0.220000	0.080000	1.000000	0.180000	0.367732	0.220000	0	0.130000	1.000000
CSTF3	1479	broad.mit.edu	37	11	33120306	33120306	+	Missense_Mutation	SNP	C	C	T			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr11:33120306C>T	ENST00000323959.4	-	13	1197	c.1058G>A	c.(1057-1059)cGc>cAc	p.R353H	TCP11L1_ENST00000324357.9_Intron	NM_001326.2	NP_001317.1	Q12996	CSTF3_HUMAN	cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa			19					ATACTTCATGCGACTCTAAGG	0.398000																								0							SO:0001583	missense			ENST00000323959.4	0	1	hg19	CCDS7883.1	.	.	.	.	.	.	.	.	.	.	C	18.330000	3.599320	0.663320	.	.	ENSG00000176102	ENST00000323959;ENST00000537832	T	0.35421	1.31	5.710000	4.790000	0.613990	Tetratricopeptide-like helical (1);	0.000000	0.85682	D	0.000000	T	0.40956	0.1138	M	0.84846	2.72	0.807220	D	1.000000	P	0.46457	0.878	B	0.32980	0.156	T	0.55667	-0.8105	10	0.54805	T	0.06	.	15.992000	0.802140	0.1358:0.8642:0.0:0.0	.	353	Q12996	CSTF3_HUMAN	H	353;286	ENSP00000315791:R353H	ENSP00000315791:R353H	R	-	2	0	CSTF3	33076882	1	0.714170	1	0.803570	0.965000	0.642790	7.813000	0.861230	1.394000	0.466240	0.650000	0.862430	CGC		TCGA-RB-AA9M-01A-11D-A397-08	CSTF3-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000388801.1	0	0	0	5	678	0	108	0	2.085783e-02	0	24	0	108	2		0	0	0	0	0	2	1	0.936529	5	673	0	108	2		0	0	0	0	0	2	-1.898617	0	1	0	0		1	1	2	3	2.032382	0	0.100001	2	0.112865	0.180000	0.060000	1.000000	0.140000	0.338860	0.180000	0	0.100000	1.000000
DDB2	1643	broad.mit.edu	37	11	47259552	47259552	+	Splice_Site	SNP	G	G	A			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr11:47259552G>A	ENST00000256996.4	+	8	1383	c.1188G>A	c.(1186-1188)tcG>tcA	p.S396S	DDB2_ENST00000378600.3_Splice_Site_p.S207S|ACP2_ENST00000525230.1_5'Flank|DDB2_ENST00000378603.3_Splice_Site_p.S332S|DDB2_ENST00000378601.3_3'UTR	NM_000107.2	NP_000098.1	Q92466	DDB2_HUMAN	damage-specific DNA binding protein 2, 48kDa			17					GCATCAGTTCGGTGAGGCTTG	0.463000			Mis, N			skin basal cell, skin squamous cell, melanoma		Direct reversal of damage;Nucleotide excision repair (NER)	Xeroderma Pigmentosum					yes	Rec		Xeroderma pigmentosum (E)	11	11p12	1643	damage-specific DNA binding protein 2		E	0							SO:0001630	splice_region_variant	Familial Cancer Database	incl. XPA, XPB, XPC, XPD, XPE, XPF, XPG, XP Variant, XPV	ENST00000256996.4	1	0	hg19	CCDS7927.1																																																																																				TCGA-RB-AA9M-01A-11D-A397-08	DDB2-201	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding		1	0	0	9	253	0	40	0	7.307775e-01	0	73	0	40	2		0	0	0	0	0	2	1	0.994446	9	253	0	39	2		0	0	0	0	0	2	-2.737534	1	1	121412	2	34	1	1	2	3	2.032382	0	0.100001	2	0.112865	0.790000	0.370000	1.000000	1.000000	0.779574	0.790000	0	0.540000	1.000000
SF3B2	10992	broad.mit.edu	37	11	65820570	65820570	+	Missense_Mutation	SNP	G	G	A			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr11:65820570G>A	ENST00000322535.6	+	3	302	c.253G>A	c.(253-255)Gca>Aca	p.A85T	SF3B2_ENST00000528302.1_Missense_Mutation_p.A85T|snoU13_ENST00000459530.1_RNA	NM_006842.2	NP_006833.2	Q13435	SF3B2_HUMAN	splicing factor 3b, subunit 2, 145kDa			41					TCCCATGTCGGCACAGGTAGG	0.493000																								0							SO:0001583	missense			ENST00000322535.6	0	1	hg19	CCDS31612.1	.	.	.	.	.	.	.	.	.	.	G	12.840000	2.059249	0.363730	.	.	ENSG00000087365	ENST00000528302;ENST00000322535;ENST00000533595;ENST00000524627;ENST00000355456;ENST00000530322;ENST00000524475	.	.	.	4.550000	3.640000	0.417300	.	0.317215	0.34291	N	0.004088	T	0.38878	0.1057	N	0.08118	0	0.307480	N	0.745392	D;D	0.57571	0.98;0.98	D;P	0.68192	0.956;0.811	T	0.36529	-0.9744	9	0.52906	T	0.07	-5.6862	8.659800	0.340860	0.1041:0.0:0.8959:0.0	.	85;85	Q13435;E9PJ04	SF3B2_HUMAN;.	T	85;85;85;85;87;80;3	.	ENSP00000318861:A85T	A	+	1	0	SF3B2	65577146	9.970000e-01	0.396340	9.940000e-01	0.499520	0.846000	0.480900	5.333000	0.659170	1.270000	0.442970	0.655000	0.942530	GCA		TCGA-RB-AA9M-01A-11D-A397-08	SF3B2-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000391352.2	0	0	0	6	775	0	134	0	3.545936e-01	0	142	0	134	2		0	0	0	0	0	2	1	0.963481	6	764	0	132	2		0	0	0	0	0	2	-2.180734	0	1	0	0		1	1	2	3	2.032382	0	0.100001	2	0.112865	0.180000	0.060000	1.000000	0.160000	0.341978	0.180000	0	0.110000	1.000000
CLEC12A	160364	broad.mit.edu	37	12	10131591	10131591	+	Missense_Mutation	SNP	C	C	T	rs141455664	byFrequency	TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr12:10131591C>T	ENST00000304361.4	+	2	300	c.118C>T	c.(118-120)Cgt>Tgt	p.R40C	CLEC12A_ENST00000434319.2_Missense_Mutation_p.R40C|CLEC12A_ENST00000355690.4_Missense_Mutation_p.R50C|CLEC12A_ENST00000350667.4_Intron	NM_138337.5|NM_201623.3	NP_612210.4|NP_963917.2	Q5QGZ9	CL12A_HUMAN	C-type lectin domain family 12, member A			16					TCATGTATGGCGTCCAGCAGC	0.433000													Melanoma(197;1487 2125 16611 22221 34855)											0							SO:0001583	missense			ENST00000304361.4	0	1	hg19	CCDS8608.1	.	.	.	.	.	.	.	.	.	.	C	11.260000	1.584844	0.282680	0.0	2.33E-4	ENSG00000172322	ENST00000355690;ENST00000396507;ENST00000304361;ENST00000434319	T;T;T;T	0.09163	4.41;3.01;4.43;3.88	4.580000	2.690000	0.318650	.	.	.	.	.	T	0.13586	0.0329	M	0.84219	2.685	0.199450	N	0.999945	B;B	0.33549	0.293;0.417	B;B	0.25759	0.029;0.063	T	0.15178	-1.0446	9	0.44086	T	0.13	.	6.704900	0.232440	0.0:0.718:0.1808:0.1011	.	40;50	Q5QGZ9;Q5QGZ9-1	CL12A_HUMAN;.	C	50;40;40;40	ENSP00000347916:R50C;ENSP00000379764:R40C;ENSP00000302804:R40C;ENSP00000405244:R40C	ENSP00000302804:R40C	R	+	1	0	CLEC12A	10022858	2.500000e-02	0.190820	1.800000e-02	0.162750	0.008000	0.064300	0.136000	0.159740	0.591000	0.297110	0.650000	0.862430	CGT		TCGA-RB-AA9M-01A-11D-A397-08	CLEC12A-001	KNOWN	basic|appris_candidate|CCDS	protein_coding	protein_coding	OTTHUMT00000399545.1	1	0	0	29	404	1	58	0	0	0	1	1	58	2		0	0	0	0	0	2	1	0.833167	29	401	1	58	23		0	0	0	0	0	2	-3.318739	1	1	121412	8	44	1	1	2	3	2.016832	0	0.100001	2	0.109353	0.990000	0.940000	1.000000	1.000000	0.996545	0.990000	1	0.990000	1.000000
HVCN1	84329	broad.mit.edu	37	12	111088053	111088053	+	Missense_Mutation	SNP	G	G	A			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr12:111088053G>A	ENST00000356742.5	-	6	1429	c.676C>T	c.(676-678)Cgg>Tgg	p.R226W	HVCN1_ENST00000548312.1_Missense_Mutation_p.R226W|HVCN1_ENST00000439744.2_Missense_Mutation_p.R206W|HVCN1_ENST00000242607.8_Missense_Mutation_p.R226W			Q96D96	HVCN1_HUMAN	hydrogen voltage-gated channel 1			19					AAGAGTTGCCGTTCTGAACGT	0.398000																								0							SO:0001583	missense			ENST00000356742.5	0	1	hg19	CCDS31900.1	.	.	.	.	.	.	.	.	.	.	G	15.940000	2.980869	0.538270	.	.	ENSG00000122986	ENST00000548312;ENST00000242607;ENST00000356742;ENST00000439744	T;T;T;T	0.50813	0.73;0.75;0.75;0.75	6.170000	4.310000	0.513920	.	0.308268	0.36409	N	0.002616	T	0.64768	0.2628	M	0.76574	2.34	0.320530	N	0.596686	B;D	0.76494	0.068;0.999	B;P	0.60886	0.019;0.88	T	0.74870	-0.3517	10	0.87932	D	0	-25.0411	13.914800	0.638900	0.0:0.0:0.7229:0.2771	.	226;226	Q96D96;Q96D96-3	HVCN1_HUMAN;.	W	226;226;226;206	ENSP00000449601:R226W;ENSP00000242607:R226W;ENSP00000349181:R226W;ENSP00000412052:R206W	ENSP00000242607:R226W	R	-	1	2	HVCN1	109572436	1	0.714170	1	0.803570	0.987000	0.754690	2.967000	0.492160	0.882000	0.360160	-0.182000	0.129630	CGG		TCGA-RB-AA9M-01A-11D-A397-08	HVCN1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000404653.1	0	0	0	5	405	0	73	0	8.453255e-02	0	32	0	73	2		0	0	0	0	0	2	1	0.936693	5	402	0	73	2		0	0	0	0	0	2	-3.140808	1	1	121410	1	32	1	1	2	3	2.007791	0	0.100001	2	0.107144	0.280000	0.100000	1.000000	0.240000	0.377212	0.280000	0	0.170000	0.520000
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	rs121913529		TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08			C	A	C	C		Valid	Somatic	Phase_I	WXS	KRAS_deep			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr12:25398284C>A	ENST00000256078.4	-	2	98	c.35G>T	c.(34-36)gGt>gTt	p.G12V	KRAS_ENST00000556131.1_Missense_Mutation_p.G12V|KRAS_ENST00000557334.1_Missense_Mutation_p.G12V|KRAS_ENST00000311936.3_Missense_Mutation_p.G12V	NM_033360.2	NP_203524.1	P01116	RASK_HUMAN	Kirsten rat sarcoma viral oncogene homolog	p.G12D(8562)|p.G12V(5775)|p.G12A(1407)|p.G12F(46)|p.G12L(8)|p.G12I(4)|p.G12E(3)|p.G12W(3)|p.G12Y(2)|p.G12fs*3(1)|p.G12C(1)|p.G12N(1)	UBE2L3/KRAS(2)	25349	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)		GCCTACGCCACCAGCTCCAAC	0.348000	G12A(KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12A(KPNSI9S_AUTONOMIC_GANGLIA)|G12A(MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12A(NCIH1573_LUNG)|G12A(NCIH2009_LUNG)|G12A(RERFLCAD1_LUNG)|G12A(RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12A(SW1116_LARGE_INTESTINE)|G12D(AGS_STOMACH)|G12D(ASPC1_PANCREAS)|G12D(COLO678_LARGE_INTESTINE)|G12D(HEC1A_ENDOMETRIUM)|G12D(HEC50B_ENDOMETRIUM)|G12D(HEYA8_OVARY)|G12D(HPAC_PANCREAS)|G12D(HPAFII_PANCREAS)|G12D(KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12D(KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12D(KP4_PANCREAS)|G12D(L33_PANCREAS)|G12D(LS180_LARGE_INTESTINE)|G12D(LS513_LARGE_INTESTINE)|G12D(MCAS_OVARY)|G12D(PANC0203_PANCREAS)|G12D(PANC0403_PANCREAS)|G12D(PANC0504_PANCREAS)|G12D(PANC0813_PANCREAS)|G12D(PANC1_PANCREAS)|G12D(PK1_PANCREAS)|G12D(PK59_PANCREAS)|G12D(SKLU1_LUNG)|G12D(SNUC2A_LARGE_INTESTINE)|G12D(SU8686_PANCREAS)|G12D(SUIT2_PANCREAS)|G12D(SW1990_PANCREAS)|G12V(A498_KIDNEY)|G12V(CAPAN2_PANCREAS)|G12V(CFPAC1_PANCREAS)|G12V(COLO668_LUNG)|G12V(CORL23_LUNG)|G12V(DANG_PANCREAS)|G12V(HCC56_LARGE_INTESTINE)|G12V(HUPT4_PANCREAS)|G12V(KP3_PANCREAS)|G12V(LCLC97TM1_LUNG)|G12V(NCIH2444_LUNG)|G12V(NCIH441_LUNG)|G12V(NCIH727_LUNG)|G12V(PANC0327_PANCREAS)|G12V(PATU8902_PANCREAS)|G12V(PATU8988S_PANCREAS)|G12V(QGP1_PANCREAS)|G12V(RCM1_LARGE_INTESTINE)|G12V(RERFLCAD2_LUNG)|G12V(RKN_OVARY)|G12V(SH10TC_STOMACH)|G12V(SHP77_LUNG)|G12V(SNGM_ENDOMETRIUM)|G12V(SW403_LARGE_INTESTINE)|G12V(SW480_LARGE_INTESTINE)|G12V(SW620_LARGE_INTESTINE)|G12V(SW900_LUNG)|G12V(YAPC_PANCREAS)	119	Mis		pancreatic, colorectal, lung, thyroid, AML, others				Noonan syndrome;Cardiofaciocutaneous syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			Pancreas(8;6 143 191 305 2070 2426 4376 10944 11745 26467 38091 50869)		Dom	yes		12	12p12.1	3845	v-Ki-ras2 Kirsten rat sarcoma 2 viral oncogene homolog		L, E, M, O	15813	Substitution - Missense(15812)|Deletion - Frameshift(1)						SO:0001583	missense	Familial Cancer Database	Male Turner syndrome, Pterygium Colli syndrome, incl. Noonan-like/Multiple Giant Cell Lesion syndrome; Noonan s. with multiple lentigines/LEOPARD syndrome;CFC, CFCS	ENST00000256078.4	1	1	hg19	CCDS8703.1	.	.	.	.	.	.	.	.	.	.	C	27.200000	4.808637	0.907070	.	.	ENSG00000133703	ENST00000311936;ENST00000557334;ENST00000256078;ENST00000556131	T;T;T;T	0.78707	-1.2;-1.2;-1.2;-1.2	5.680000	5.680000	0.881260	Small GTP-binding protein domain (1);	0.000000	0.85682	D	0.000000	D	0.90373	0.6987	M	0.90650	3.135	0.807220	D	1.000000	D;D	0.76494	0.997;0.999	D;D	0.72625	0.969;0.978	D	0.91773	0.5429	10	0.72032	D	0.01	.	18.371900	0.904090	0.0:1.0:0.0:0.0	.	12;12	P01116-2;P01116	.;RASK_HUMAN	V	12	ENSP00000308495:G12V;ENSP00000452512:G12V;ENSP00000256078:G12V;ENSP00000451856:G12V	ENSP00000256078:G12V	G	-	2	0	KRAS	25289551	1	0.714170	1	0.803570	0.998000	0.957120	7.743000	0.850200	2.668000	0.907890	0.563000	0.778840	GGT		TCGA-RB-AA9M-01A-11D-A397-08	KRAS-004	KNOWN	not_organism_supported|basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000412232.1	1	0	0	18	311	0	31	1	4.935802e-01	9	20	0	31	2	1	9.999959e-01	11	369	0	770	2	1	0.999982	18	308	0	31	2	1	1	617	7400	2	7998	17	-5.560625	1	1	0	0		1	1	2	3	2.024180	0	0.100001	2	0.111112	0.990000	0.700000	1.000000	1.000000	0.964314	0.990000	1	0.910000	1.000000
ZIC5	85416	broad.mit.edu	37	13	100617645	100617645	+	Missense_Mutation	SNP	G	G	A			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr13:100617645G>A	ENST00000267294.4	-	2	2211	c.1978C>T	c.(1978-1980)Cgg>Tgg	p.R660W		NM_033132.3	NP_149123.2	Q96T25	ZIC5_HUMAN	Zic family member 5			9	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				TGTATCGTCCGCACAACTTCA	0.483000																								0							SO:0001583	missense			ENST00000267294.4	0	1	hg19	CCDS9494.2	.	.	.	.	.	.	.	.	.	.	G	18.140000	3.556755	0.654250	.	.	ENSG00000139800	ENST00000267294	T	0.18016	2.24	6.060000	5.140000	0.703340	.	.	.	.	.	T	0.29321	0.0730	L	0.36672	1.1	0.350970	D	0.764889	D	0.89917	1.0	D	0.69654	0.965	T	0.18335	-1.0340	9	0.87932	D	0	.	11.116300	0.482620	0.0:0.0:0.7346:0.2654	.	660	Q96T25	ZIC5_HUMAN	W	660	ENSP00000267294:R660W	ENSP00000267294:R660W	R	-	1	2	ZIC5	99415646	9.980000e-01	0.408360	9.970000e-01	0.539660	0.991000	0.796840	2.915000	0.488050	2.871000	0.984540	0.655000	0.942530	CGG		TCGA-RB-AA9M-01A-11D-A397-08	ZIC5-001	KNOWN	basic|appris_principal|exp_conf|CCDS	protein_coding	protein_coding	OTTHUMT00000045623.3	0	0	0	5	437	0	65		0	0	0	0	65	2		0	0	0	0	0	2	1	0.935995	5	432	0	65	2		0	0	0	0	0	2	-2.212733	0	1	121412	10	40	1	1	2	3	2.022375	0	0.100001	2	0.110673	0.270000	0.090000	1.000000	0.220000	0.395986	0.270000	0	0.160000	1.000000
COL4A1	1282	broad.mit.edu	37	13	110822921	110822921	+	Missense_Mutation	SNP	C	C	T			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08			C	T	C	C		Inconclusive	Somatic	Phase_I	WXS	RNA			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr13:110822921C>T	ENST00000375820.4	-	42	3836	c.3715G>A	c.(3715-3717)Gga>Aga	p.G1239R		NM_001845.4	NP_001836.2	P02462	CO4A1_HUMAN	collagen, type IV, alpha 1			105	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)		CCCTGAGGTCCGCGGTCTCCT	0.627000																								0							SO:0001583	missense			ENST00000375820.4	0	1	hg19	CCDS9511.1	.	.	.	.	.	.	.	.	.	.	C	27.800000	4.862753	0.915110	.	.	ENSG00000187498	ENST00000375815;ENST00000375820;ENST00000397198	D	0.99637	-6.29	4.790000	4.790000	0.613990	.	0.057832	0.64402	D	0.000002	D	0.99813	0.9918	H	0.98089	4.145	0.807220	D	1.000000	D	0.89917	1.0	D	0.85130	0.997	D	0.96593	0.9439	10	0.87932	D	0	.	17.916800	0.889540	0.0:1.0:0.0:0.0	.	1239	P02462	CO4A1_HUMAN	R	882;1239;888	ENSP00000364979:G1239R	ENSP00000364973:G882R	G	-	1	0	COL4A1	109620922	1	0.714170	5.410000e-01	0.281020	0.929000	0.565000	7.171000	0.775950	2.198000	0.705610	0.650000	0.862430	GGA		TCGA-RB-AA9M-01A-11D-A397-08	COL4A1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000045759.3	0	0	0	4	101	0	20	0	9.999345e-01	0	899	0	20	2		0	0	0	0	0	2	1	0.891773	4	101	0	20	2		0	0	0	0	0	2	-7.366885	1	1	0	0		1	1	2	3	2.022375	0	0.100001	2	0.110673	0.920000	0.300000	1.000000	1.000000	0.814044	0.920000	1	0.540000	1.000000
RNF17	56163	broad.mit.edu	37	13	25435469	25435469	+	Silent	SNP	C	C	T			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr13:25435469C>T	ENST00000255324.5	+	27	3890	c.3838C>T	c.(3838-3840)Ctg>Ttg	p.L1280L	RNF17_ENST00000339524.3_Silent_p.L332L|RNF17_ENST00000381921.1_Silent_p.L1280L	NM_001184993.1|NM_031277.2	NP_001171922.1|NP_112567.2	Q9BXT8	RNF17_HUMAN	ring finger protein 17			36		Lung SC(185;0.0225)|Breast(139;0.077)			CCCTATTTTGCTGTATCCTGA	0.318000																								0							SO:0001819	synonymous_variant			ENST00000255324.5	1	1	hg19	CCDS9308.2																																																																																				TCGA-RB-AA9M-01A-11D-A397-08	RNF17-003	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000044217.1	1	0	0	46	960	0	147		0	0	0	0	147	2		0	0	0	0	0	2	1	1.000000	46	951	0	147	2		0	0	0	0	0	2	-5.239360	1	1	0	0		1	1	2	3	2.036290	0	0.100001	2	0.113738	0.970000	0.700000	1.000000	1.000000	0.928698	0.970000	1	0.820000	1.000000
PLEKHG3	26030	broad.mit.edu	37	14	65197580	65197580	+	Silent	SNP	G	G	A			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr14:65197580G>A	ENST00000394691.1	+	6	777	c.630G>A	c.(628-630)cgG>cgA	p.R210R	PLEKHG3_ENST00000247226.7_Silent_p.R154R			A1L390	PKHG3_HUMAN	pleckstrin homology domain containing, family G (with RhoGef domain) member 3			29					TTCGGGACCGGCAGGAGCTGC	0.642000																								0							SO:0001819	synonymous_variant			ENST00000394691.1	0	1	hg19																																																																																					TCGA-RB-AA9M-01A-11D-A397-08	PLEKHG3-010	KNOWN	basic|appris_principal	protein_coding	protein_coding	OTTHUMT00000412028.1	0	0	0	4	170	0	31	0	5.303362e-01	0	67	0	31	2		0	0	0	0	0	2	1	0.885772	4	166	0	31	2		0	0	0	0	0	2	-3.543912	1	1	0	0		1	1	2	3	2.033040	0	0.100001	2	0.112865	0.580000	0.180000	1.000000	1.000000	0.633416	0.580000	0	0.330000	1.000000
AQR	9716	broad.mit.edu	37	15	35202432	35202432	+	Missense_Mutation	SNP	C	C	T			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr15:35202432C>T	ENST00000156471.5	-	17	1792	c.1567G>A	c.(1567-1569)Gcc>Acc	p.A523T		NM_014691.2	NP_055506.1	O60306	AQR_HUMAN	aquarius intron-binding spliceosomal factor			57		Lung NSC(122;8.7e-10)|all_lung(180;1.47e-08)			TTGGGTTTGGCCACTTCAACG	0.473000																								0							SO:0001583	missense			ENST00000156471.5	0	1	hg19	CCDS42013.1	.	.	.	.	.	.	.	.	.	.	C	36.000000	5.798913	0.969600	.	.	ENSG00000021776	ENST00000156471;ENST00000543879	D	0.93953	-3.32	5.730000	5.730000	0.898150	.	0.000000	0.85682	D	0.000000	D	0.96800	0.8955	M	0.91249	3.19	0.807220	D	1.000000	D	0.54772	0.968	P	0.54664	0.758	D	0.96700	0.9517	10	0.52906	T	0.07	-13.1707	19.911200	0.970250	0.0:1.0:0.0:0.0	.	523	O60306	AQR_HUMAN	T	523	ENSP00000156471:A523T	ENSP00000156471:A523T	A	-	1	0	AQR	32989724	1	0.714170	1	0.803570	0.952000	0.607820	7.696000	0.842700	2.718000	0.929930	0.585000	0.799380	GCC		TCGA-RB-AA9M-01A-11D-A397-08	AQR-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000417526.2	0	0	0	7	528	0	74	0	1.695721e-01	0	49	0	74	2		0	0	0	0	0	2	1	0.980204	7	524	0	73	2		0	0	0	0	0	2	-2.026521	0	1	0	0		1	1	2	3	2.030819	0	0.100001	2	0.112427	0.310000	0.120000	1.000000	0.250000	0.433652	0.310000	0	0.200000	1.000000
INO80	54617	broad.mit.edu	37	15	41341604	41341604	+	Silent	SNP	C	C	T			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr15:41341604C>T	ENST00000361937.3	-	21	2881	c.2457G>A	c.(2455-2457)ccG>ccA	p.P819P	INO80_ENST00000401393.3_Silent_p.P819P			Q9ULG1	INO80_HUMAN	INO80 complex subunit			49					CAAATAACTCCGGGTGATTAC	0.408000																								0							SO:0001819	synonymous_variant			ENST00000361937.3	1	1	hg19	CCDS10071.1																																																																																				TCGA-RB-AA9M-01A-11D-A397-08	INO80-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000252527.2	1	0	0	20	340	0	47	1	5.510321e-01	4	28	0	47	2		0	0	0	0	0	2	1	0.999996	19	339	0	47	2		0	0	0	0	0	2	-3.075967	1	1	121412	3	35	1	1	2	3	2.030819	0	0.100001	2	0.112427	0.990000	0.730000	1.000000	1.000000	0.971056	0.990000	1	0.930000	1.000000
SEMA6D	80031	broad.mit.edu	37	15	48056428	48056428	+	Silent	SNP	A	A	G			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr15:48056428A>G	ENST00000316364.5	+	11	1462	c.1023A>G	c.(1021-1023)aaA>aaG	p.K341K	SEMA6D_ENST00000355997.3_Silent_p.K341K|SEMA6D_ENST00000358066.4_Silent_p.K341K|SEMA6D_ENST00000389428.3_Silent_p.K341K|SEMA6D_ENST00000389433.2_Silent_p.K341K|SEMA6D_ENST00000537942.1_Silent_p.K341K|SEMA6D_ENST00000389432.2_Silent_p.K341K|SEMA6D_ENST00000536845.2_Silent_p.K341K|SEMA6D_ENST00000558816.1_Silent_p.K341K|SEMA6D_ENST00000558014.1_Silent_p.K341K|SEMA6D_ENST00000354744.4_Silent_p.K341K|SEMA6D_ENST00000389425.3_Silent_p.K341K	NM_153618.1	NP_705871.1	Q8NFY4	SEM6D_HUMAN	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D			77		all_lung(180;0.000635)|Myeloproliferative disorder(241;0.116)|Melanoma(134;0.18)			AAGTATTCAAAGGACGGTTTA	0.413000																								0							SO:0001819	synonymous_variant			ENST00000316364.5	1	1	hg19	CCDS32225.1																																																																																				TCGA-RB-AA9M-01A-11D-A397-08	SEMA6D-004	KNOWN	alternative_5_UTR|basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000416868.1	1	0	0	24	388	0	50	0	3.316428e-02	0	5	0	50	2		0	0	0	0	0	2	1	1.000000	24	385	0	49	2		0	0	0	0	0	2	-6.077965	1	1	0	0		1	1	2	3	2.030819	0	0.100001	2	0.112427	0.990000	0.790000	1.000000	1.000000	0.982951	0.990000	1	0.990000	1.000000
POLG	5428	broad.mit.edu	37	15	89864367	89864367	+	Missense_Mutation	SNP	G	G	A			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr15:89864367G>A	ENST00000268124.5	-	17	3056	c.2723C>T	c.(2722-2724)gCc>gTc	p.A908V	POLG_ENST00000442287.2_Missense_Mutation_p.A908V	NM_001126131.1|NM_002693.2	NP_001119603.1|NP_002684.1	P54098	DPOG1_HUMAN	polymerase (DNA directed), gamma			33	Lung NSC(78;0.0472)|all_lung(78;0.089)		STAD - Stomach adenocarcinoma(125;0.165)		ATGCATGCCGGCAAAGTGGGC	0.582000								DNA polymerases (catalytic subunits)					Colon(73;648 1203 11348 18386 27782)											0							SO:0001583	missense			ENST00000268124.5	0	1	hg19	CCDS10350.1	.	.	.	.	.	.	.	.	.	.	G	25.600000	4.651395	0.880560	.	.	ENSG00000140521	ENST00000268124;ENST00000442287	D;D	0.96716	-4.1;-4.1	5.240000	4.310000	0.513920	DNA-directed DNA polymerase, family A, palm domain (2);	0.050208	0.85682	D	0.000000	D	0.97343	0.9131	L	0.58583	1.82	0.584320	D	0.999999	D	0.89917	1.0	D	0.87578	0.998	D	0.97312	0.9938	10	0.51188	T	0.08	-3.644	15.200400	0.731320	0.0:0.0:0.858:0.142	.	908	P54098	DPOG1_HUMAN	V	908	ENSP00000268124:A908V;ENSP00000399851:A908V	ENSP00000268124:A908V	A	-	2	0	POLG	87665371	1	0.714170	4.510000e-01	0.269820	0.989000	0.773840	7.638000	0.833280	1.184000	0.429570	0.655000	0.942530	GCC		TCGA-RB-AA9M-01A-11D-A397-08	POLG-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000312854.2	0	0	0	6	659	0	109	0	2.191350e-01	0	83	0	109	2		0	0	0	0	0	2	1	0.964262	6	654	0	109	2		0	0	0	0	0	2	-2.004086	0	1	0	0		1	1	2	3	2.030819	0	0.100001	2	0.112427	0.220000	0.080000	1.000000	0.180000	0.363205	0.220000	0	0.130000	1.000000
KIAA0556	23247	broad.mit.edu	37	16	27761391	27761391	+	Missense_Mutation	SNP	G	G	T			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr16:27761391G>T	ENST00000261588.4	+	16	3129	c.3110G>T	c.(3109-3111)gGg>gTg	p.G1037V		NM_015202.2	NP_056017.2	O60303	K0556_HUMAN	KIAA0556			76					CTCATCGACGGGGTGAACAGG	0.552000																								0							SO:0001583	missense			ENST00000261588.4	1	1	hg19	CCDS32415.1	.	.	.	.	.	.	.	.	.	.	G	20.100000	3.936532	0.734420	.	.	ENSG00000047578	ENST00000261588	T	0.24908	1.83	5.220000	5.220000	0.725690	.	0.052178	0.85682	D	0.000000	T	0.64681	0.2620	H	0.94698	3.57	0.807220	D	1.000000	D	0.89917	1.0	D	0.97110	1.0	T	0.75869	-0.3165	10	0.87932	D	0	-20.8399	18.760800	0.918490	0.0:0.0:1.0:0.0	.	1037	O60303	K0556_HUMAN	V	1037	ENSP00000261588:G1037V	ENSP00000261588:G1037V	G	+	2	0	KIAA0556	27668892	1	0.714170	9.950000e-01	0.509660	0.686000	0.399770	7.850000	0.869150	2.578000	0.870160	0.655000	0.942530	GGG		TCGA-RB-AA9M-01A-11D-A397-08	KIAA0556-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000433724.1	1	0	1	15	230	0	49	1	2.302530e-01	5	9	0	49	2		0	0	0	0	0	2	1	0.999883	15	229	0	49	2		0	0	0	0	0	2	-2.842415	1	1	0	0		1	1	2	3	2.057098	0	0.100001	2	0.118081	0.990000	0.760000	1.000000	1.000000	0.981608	0.990000	1	0.990000	1.000000
SRL	6345	broad.mit.edu	37	16	4253174	4253174	+	Missense_Mutation	SNP	C	C	G	rs74003216	by1000genomes	TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr16:4253174C>G	ENST00000399609.3	-	3	264	c.252G>C	c.(250-252)gaG>gaC	p.E84D	SRL_ENST00000537996.1_Missense_Mutation_p.E42D	NM_001098814.1	NP_001092284.1	Q86TD4	SRCA_HUMAN	sarcalumenin			21					TACCTGTGATCTCATGCTGCC	0.597000																								0							SO:0001583	missense			ENST00000399609.3	1	0	hg19	CCDS42113.1	14	0.00641025641025641	13	0.026422764227642278	1	0.0027624309392265192	0	0.0	0	0.0	C	10.720000	1.428480	0.257260	0.017607	2.38E-4	ENSG00000185739	ENST00000399609;ENST00000330063;ENST00000537996	D;D	0.95447	-3.71;-3.71	4.140000	4.140000	0.485510	.	0.000000	0.64402	U	0.000001	D	0.83110	0.5183	L	0.53249	1.67	0.547530	D	0.999989	B	0.27559	0.181	B	0.26864	0.074	D	0.83958	0.0320	10	0.21540	T	0.41	-19.3002	10.604400	0.453860	0.0:0.9102:0.0:0.0898	.	84	Q86TD4-2	.	D	84;542;42	ENSP00000382518:E84D;ENSP00000440350:E42D	ENSP00000333285:E542D	E	-	3	2	SRL	4193175	1	0.714170	1	0.803570	0.989000	0.773840	3.559000	0.537560	2.277000	0.760200	0.650000	0.862430	GAG		TCGA-RB-AA9M-01A-11D-A397-08	SRL-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000438087.1	1	0	0	60	721	0	119		0	0	0	0	119	2		0	0	0	0	0	2	1	1.000000	59	718	0	119	2		0	0	0	0	0	2	-13.426180	1	1	121008	210	56	1	1	2	3	2.057098	0	0.100001	2	0.118081	0.990000	0.990000	1.000000	1.000000	0.999989	0.990000	1	0.990000	1.000000
TP53	7157	broad.mit.edu	37	17	7577082	7577082	+	Nonsense_Mutation	SNP	C	C	A			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08			C	A	C	C		Valid	Somatic	Phase_I	WXS	targeted			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr17:7577082C>A	ENST00000269305.4	-	8	1045	c.856G>T	c.(856-858)Gaa>Taa	p.E286*	TP53_ENST00000445888.2_Nonsense_Mutation_p.E286*|TP53_ENST00000574684.1_5'Flank|TP53_ENST00000455263.2_Nonsense_Mutation_p.E286*|TP53_ENST00000420246.2_Nonsense_Mutation_p.E286*|TP53_ENST00000359597.4_Nonsense_Mutation_p.E286*|TP53_ENST00000413465.2_Intron	NM_000546.5|NM_001126112.2|NM_001126118.1|NM_001276760.1|NM_001276761.1	NP_000537.3|NP_001119584.1|NP_001119590.1|NP_001263689.1|NP_001263690.1	P04637	P53_HUMAN	tumor protein p53	p.E286K(58)|p.E286*(22)|p.0?(8)|p.E286Q(5)|p.?(2)|p.E286fs*59(2)|p.E286fs*17(2)|p.R283fs*16(2)|p.R282_E287delRRTEEE(1)|p.L265_K305del41(1)|p.T284fs*57(1)|p.T284_G293del10(1)|p.E285_L289delEEENL(1)|p.R283fs*56(1)|p.E285fs*13(1)|p.G279fs*59(1)|p.R283fs*59(1)|p.V272_K292del21(1)|p.E285_N288delEEEN(1)		24185		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		Acetylsalicylic acid(DB00945)	AGATTCTCTTCCTCTGTGCGC	0.557000		111	Mis, N, F		breast, colorectal, lung, sarcoma, adrenocortical, glioma, multiple other tumour types	breast, sarcoma, adrenocortical carcinoma, glioma, multiple other tumour types		Other conserved DNA damage response genes	Osteosarcoma, Familial Clustering of;Li-Fraumeni syndrome;Hereditary Breast-Ovarian Cancer, non-BRCA1/2;Hereditary Adrenocortical Cancer;Endometrial Cancer, Familial Clustering of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			Pancreas(47;798 1329 9957 10801)	yes	Rec	yes	Li-Fraumeni syndrome	17	17p13	7157	tumor protein p53		L, E, M, O	112	Substitution - Missense(63)|Substitution - Nonsense(22)|Deletion - Frameshift(11)|Whole gene deletion(8)|Deletion - In frame(6)|Unknown(2)	GRCh37	CM076567	TP53	M		SO:0001587	stop_gained	Familial Cancer Database	Familial Osteogenic Sarcoma;LFS, SBLA syndrome (Sarcoma Breast Leukemia Adrenal cancer), incl.: Cancer with In Vitro Radioresistence, Familial, Li-Fraumeni-like s.;BRCAX;Familial Adrenocortical Carcinoma;	ENST00000269305.4	0	1	hg19	CCDS11118.1	.	.	.	.	.	.	.	.	.	.	C	31.000000	5.072281	0.939500	.	.	ENSG00000141510	ENST00000359597;ENST00000269305;ENST00000455263;ENST00000420246;ENST00000445888;ENST00000396473;ENST00000509690	.	.	.	4.990000	4.990000	0.663350	.	0.000000	0.85682	D	0.000000	.	.	.	.	.	.	0.807220	A	1.000000	.	.	.	.	.	.	.	.	.	.	0.87932	D	0	-23.2961	15.807000	0.785200	0.0:1.0:0.0:0.0	.	.	.	.	X	286;286;286;286;286;275;154	.	ENSP00000269305:E286X	E	-	1	0	TP53	7517807	1	0.714170	9.720000e-01	0.419010	0.455000	0.324080	7.587000	0.826130	2.579000	0.870560	0.462000	0.415740	GAA		TCGA-RB-AA9M-01A-11D-A397-08	TP53-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000367397.1	1	0	0	14	154	0	30	0	9.780873e-01	1	72	0	30	2	1	1	76	1091	0	2302	2	1	0.999778	14	152	0	27	2		0	0	0	0	0	2	-7.026286	1	1	0	0		1	0	1	1	1.915075	0	0.100001	2	0.052632	0.900000	0.640000	1.000000	0.990000	0.888564	0.900000	1	0.780000	0.980000
ZNF773	374928	broad.mit.edu	37	19	58017973	58017973	+	Silent	SNP	G	G	A	rs149516480		TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr19:58017973G>A	ENST00000282292.4	+	4	650	c.510G>A	c.(508-510)acG>acA	p.T170T	ZNF773_ENST00000598770.1_Silent_p.T169T|ZNF773_ENST00000599847.1_Intron|ZNF773_ENST00000593916.1_Intron	NM_198542.1	NP_940944.1	Q6PK81	ZN773_HUMAN	zinc finger protein 773			22		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)			TGACTCACACGGGAGAGAAGT	0.488000																								0							SO:0001819	synonymous_variant			ENST00000282292.4	0	1	hg19	CCDS33134.1																																																																																				TCGA-RB-AA9M-01A-11D-A397-08	ZNF773-001	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000466475.1	1	0	1	21	150	0	23	0	1.735482e-01	0	6	0	23	2		0	0	0	0	0	2	1	0.999998	21	146	0	23	2		0	0	0	0	0	2	-2.923011	1	1	121412	19	41	1	0	3	3	2.057200	1	0.100001	2	0.142450	0.990000	0.990000	1.000000	1.000000	0.999997	0.990000	1	0.990000	1.000000
FNDC5	252995	broad.mit.edu	37	1	33330257	33330257	+	Missense_Mutation	SNP	G	G	T			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr1:33330257G>T	ENST00000496770.1	-	5	629	c.416C>A	c.(415-417)gCa>gAa	p.A139E	FNDC5_ENST00000481487.1_Intron|FNDC5_ENST00000373471.3_Intron|FNDC5_ENST00000609187.1_Intron	NM_001171941.1	NP_001165412.1	Q8NAU1	FNDC5_HUMAN	fibronectin type III domain containing 5			5		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)			CCCAGGTCTTGCCCTCACCTT	0.602000																								0							SO:0001583	missense			ENST00000496770.1	0	1	hg19																																																																																					TCGA-RB-AA9M-01A-11D-A397-08	FNDC5-006	PUTATIVE	basic	protein_coding	protein_coding	OTTHUMT00000011472.2	0	0	0	4	245	0	42	0	0	0	1	0	42	2		0	0	0	0	0	2	1	0.889202	4	243	0	41	2		0	0	0	0	0	2	-3.275825	1	1	0	0		1	0	1	1	1.914001	0	0.100001	2	0.052632	0.320000	0.110000	0.670000	0.290000	0.350674	0.320000	0	0.190000	0.490000
PRKACB	5567	broad.mit.edu	37	1	84668430	84668430	+	Missense_Mutation	SNP	A	A	G			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr1:84668430A>G	ENST00000370689.2	+	8	971	c.707A>G	c.(706-708)tAt>tGt	p.Y236C	PRKACB_ENST00000370688.3_Missense_Mutation_p.Y236C|PRKACB_ENST00000370682.3_Missense_Mutation_p.Y240C|PRKACB_ENST00000370685.3_Missense_Mutation_p.Y283C|PRKACB_ENST00000370680.1_Missense_Mutation_p.Y242C|PRKACB_ENST00000394838.2_Missense_Mutation_p.Y243C|PRKACB_ENST00000394839.2_Missense_Mutation_p.Y206C	NM_001242862.1|NM_002731.2	NP_001229791.1|NP_002722.1	P22694	KAPCB_HUMAN	protein kinase, cAMP-dependent, catalytic, beta			16					GCAGCTGGCTATCCCCCATTC	0.368000																								0							SO:0001583	missense			ENST00000370689.2	1	1	hg19	CCDS691.1	.	.	.	.	.	.	.	.	.	.	A	24.700000	4.558215	0.862310	.	.	ENSG00000142875	ENST00000370689;ENST00000370688;ENST00000370685;ENST00000370684;ENST00000394838;ENST00000370682;ENST00000370679;ENST00000370680;ENST00000394839;ENST00000370681	T;T;T;T;T;T;T;T	0.65178	-0.14;-0.14;-0.14;-0.14;-0.14;-0.14;-0.14;-0.14	5.540000	5.540000	0.830590	Serine/threonine-protein kinase-like domain (1);Serine/threonine-protein kinase, catalytic  domain (1);Protein kinase-like domain (1);Protein kinase, catalytic domain (1);	0.000000	0.85682	D	0.000000	T	0.61677	0.2366	N	0.21545	0.675	0.807220	D	1.000000	D;D;D;D;D;D;D;D;D;D;D	0.89917	1.0;0.998;0.999;0.996;0.991;0.999;0.995;0.999;0.994;1.0;0.99	D;D;D;D;P;D;D;D;D;D;D	0.91635	0.999;0.957;0.972;0.972;0.886;0.953;0.953;0.953;0.972;0.999;0.933	T	0.69767	-0.5056	10	0.87932	D	0	-9.6973	15.980100	0.801020	1.0:0.0:0.0:0.0	.	236;224;243;242;206;242;240;283;283;236;236	B2RB89;P22694-3;B4DKB0;B1APG3;B1APG4;P22694-6;P22694-7;P22694-2;B4E2L0;P22694;P22694-8	.;.;.;.;.;.;.;.;.;KAPCB_HUMAN;.	C	236;236;283;224;243;240;242;242;206;198	ENSP00000359723:Y236C;ENSP00000359722:Y236C;ENSP00000359719:Y283C;ENSP00000359718:Y224C;ENSP00000378314:Y243C;ENSP00000359716:Y240C;ENSP00000359714:Y242C;ENSP00000378315:Y206C	ENSP00000359713:Y242C	Y	+	2	0	PRKACB	84441018	1	0.714170	1	0.803570	0.993000	0.825480	9.229000	0.952730	2.230000	0.728870	0.528000	0.532280	TAT		TCGA-RB-AA9M-01A-11D-A397-08	PRKACB-001	KNOWN	basic|CCDS	protein_coding	protein_coding	OTTHUMT00000027641.1	0	0	0	36	484	0	92	0	9.846336e-01	0	90	0	92	2		0	0	0	0	0	2	1	1.000000	36	483	0	92	2		0	0	0	0	0	2	-20.000000	1	1	0	0		1	0	1	1	1.914001	0	0.100001	2	0.052632	0.940000	0.770000	1.000000	0.990000	0.931798	0.940000	1	0.860000	0.990000
ZNF831	128611	broad.mit.edu	37	20	57767447	57767447	+	Missense_Mutation	SNP	C	C	T			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr20:57767447C>T	ENST00000371030.2	+	1	1373	c.1373C>T	c.(1372-1374)gCg>gTg	p.A458V		NM_178457.1	NP_848552.1	Q5JPB2	ZN831_HUMAN	zinc finger protein 831			125	all_lung(29;0.0085)				GACATCCGCGCGCTGGAGCCA	0.677000																								0							SO:0001583	missense			ENST00000371030.2	0	1	hg19	CCDS42894.1	.	.	.	.	.	.	.	.	.	.	C	12.150000	1.850162	0.326990	.	.	ENSG00000124203	ENST00000371030	T	0.04809	3.55	5.210000	5.210000	0.722930	.	.	.	.	.	T	0.14013	0.0339	L	0.47716	1.5	0.093100	N	0.999997	D	0.76494	0.999	P	0.56788	0.806	T	0.03060	-1.1077	9	0.62326	D	0.03	-11.9417	17.743900	0.884140	0.0:1.0:0.0:0.0	.	458	Q5JPB2	ZN831_HUMAN	V	458	ENSP00000360069:A458V	ENSP00000360069:A458V	A	+	2	0	ZNF831	57200842	9.100000e-01	0.309200	2.570000e-01	0.244040	0.026000	0.113680	4.059000	0.574700	2.423000	0.821700	0.655000	0.942530	GCG		TCGA-RB-AA9M-01A-11D-A397-08	ZNF831-001	NOVEL	basic|appris_principal|exp_conf|CCDS	protein_coding	protein_coding	OTTHUMT00000079916.2	1	0	0	12	165	0	20		0	0	0	0	20	2		0	0	0	0	0	2	1	0.999133	12	162	0	19	2		0	0	0	0	0	2	-16.253660	1	1	0	0		1	1	2	3	2.029886	0	0.100001	2	0.111989	0.990000	0.780000	1.000000	1.000000	0.985185	0.990000	1	0.990000	1.000000
PCNT	5116	broad.mit.edu	37	21	47856946	47856946	+	Silent	SNP	C	C	T			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr21:47856946C>T	ENST00000359568.5	+	40	9158	c.9051C>T	c.(9049-9051)caC>caT	p.H3017H	PCNT_ENST00000480896.1_3'UTR	NM_006031.5	NP_006022.3	O95613	PCNT_HUMAN	pericentrin			104	Breast(49;0.112)				CTTTACTGCACACGTTGGAGG	0.557000																								0							SO:0001819	synonymous_variant			ENST00000359568.5	1	1	hg19	CCDS33592.1																																																																																				TCGA-RB-AA9M-01A-11D-A397-08	PCNT-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000207336.1	1	0	0	28	424	0	64	1	3.893809e-01	2	19	0	64	2		0	0	0	0	0	2	1	1.000000	28	420	0	63	2		0	0	0	0	0	2	-6.990694	1	1	0	0		1	1	2	3	2.033801	0	0.100001	2	0.112865	0.990000	0.870000	1.000000	1.000000	0.992200	0.990000	1	0.990000	1.000000
ZNF70	7621	broad.mit.edu	37	22	24087156	24087156	+	Missense_Mutation	SNP	C	C	T			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr22:24087156C>T	ENST00000341976.3	-	2	632	c.172G>A	c.(172-174)Gaa>Aaa	p.E58K		NM_021916.2	NP_068735.1	Q9UC06	ZNF70_HUMAN	zinc finger protein 70			21					TCATTTTCTTCGTCCTGCTCA	0.507000																								0							SO:0001583	missense			ENST00000341976.3	1	1	hg19	CCDS13812.1	.	.	.	.	.	.	.	.	.	.	C	4.116000	0.019653	0.080060	.	.	ENSG00000187792	ENST00000341976	T	0.06294	3.32	3.260000	0.946000	0.195490	.	.	.	.	.	T	0.05044	0.0135	L	0.36672	1.1	0.093100	N	1.000000	B	0.24132	0.098	B	0.12837	0.008	T	0.38499	-0.9658	9	0.87932	D	0	.	3.585700	0.079700	0.4283:0.437:0.0:0.1346	.	58	Q9UC06	ZNF70_HUMAN	K	58	ENSP00000339314:E58K	ENSP00000339314:E58K	E	-	1	0	ZNF70	22417156	3.900000e-02	0.199470	0	0.037020	0.011000	0.076110	0.251000	0.182570	0.324000	0.233330	0.650000	0.862430	GAA		TCGA-RB-AA9M-01A-11D-A397-08	ZNF70-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000319881.1	1	0	0	31	419	0	85	0	2.794341e-02	0	4	0	85	2		0	0	0	0	0	2	1	1.000000	31	417	0	84	2		0	0	0	0	0	2	-7.704658	1	1	121412	1	30	1	0	1	1	1.925720	0	0.100001	2	0.069768	0.990000	0.870000	1.000000	1.000000	0.991638	0.990000	1	0.990000	1.000000
TTN	7273	broad.mit.edu	37	2	179430078	179430078	+	Silent	SNP	G	G	A			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr2:179430078G>A	ENST00000591111.1	-	276	76082	c.75858C>T	c.(75856-75858)aaC>aaT	p.N25286N	TTN-AS1_ENST00000591332.1_RNA|TTN_ENST00000342992.6_Silent_p.N24359N|TTN-AS1_ENST00000585451.1_RNA|TTN-AS1_ENST00000586452.1_RNA|TTN-AS1_ENST00000419746.1_RNA|TTN-AS1_ENST00000592630.1_RNA|TTN_ENST00000460472.2_Silent_p.N17862N|TTN-AS1_ENST00000586707.1_RNA|TTN_ENST00000589042.1_Silent_p.N26927N|TTN-AS1_ENST00000590807.1_RNA|TTN-AS1_ENST00000438095.1_RNA|TTN_ENST00000342175.6_Silent_p.N18054N|TTN_ENST00000359218.5_Silent_p.N17987N|TTN-AS1_ENST00000456053.1_RNA|TTN-AS1_ENST00000586831.1_RNA|TTN-AS1_ENST00000590932.1_RNA|TTN-AS1_ENST00000592689.1_RNA|TTN-AS1_ENST00000592750.1_RNA|TTN-AS1_ENST00000592600.1_RNA			Q8WZ42	TITIN_HUMAN	titin			1448			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)		TTTCTTCAACGTTTACTCTTG	0.393000																								0							SO:0001819	synonymous_variant			ENST00000591111.1	1	1	hg19																																																																																					TCGA-RB-AA9M-01A-11D-A397-08	TTN-019	PUTATIVE	basic	protein_coding	protein_coding	OTTHUMT00000460310.1	1	0	0	39	670	0	108		0	0	0	0	108	2		0	0	0	0	0	2	1	1.000000	39	669	0	108	2		0	0	0	0	0	2	-6.449671	1	1	120816	1	35	1	1	2	3	2.030298	0	0.100001	2	0.112427	0.990000	0.820000	1.000000	1.000000	0.983014	0.990000	1	0.970000	1.000000
TTN	7273	broad.mit.edu	37	2	179483095	179483095	+	Missense_Mutation	SNP	C	C	T			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr2:179483095C>T	ENST00000591111.1	-	202	42391	c.42167G>A	c.(42166-42168)cGt>cAt	p.R14056H	TTN-AS1_ENST00000589487.1_RNA|TTN-AS1_ENST00000589907.1_RNA|RP11-171I2.4_ENST00000605334.1_lincRNA|TTN-AS1_ENST00000604956.1_RNA|TTN_ENST00000342992.6_Missense_Mutation_p.R13129H|TTN-AS1_ENST00000585451.1_RNA|TTN-AS1_ENST00000592630.1_RNA|TTN_ENST00000460472.2_Missense_Mutation_p.R6632H|TTN_ENST00000589042.1_Missense_Mutation_p.R15697H|TTN-AS1_ENST00000590807.1_RNA|TTN-AS1_ENST00000589830.1_RNA|TTN_ENST00000342175.6_Missense_Mutation_p.R6824H|TTN_ENST00000359218.5_Missense_Mutation_p.R6757H|TTN-AS1_ENST00000456053.1_RNA|TTN-AS1_ENST00000592750.1_RNA			Q8WZ42	TITIN_HUMAN	titin			1448			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)		CTTAATGTCACGTCTTTCAAC	0.438000																								0							SO:0001583	missense			ENST00000591111.1	1	1	hg19		.	.	.	.	.	.	.	.	.	.	C	15.850000	2.955264	0.532930	.	.	ENSG00000155657	ENST00000342992;ENST00000460472;ENST00000342175;ENST00000359218;ENST00000356127	T;T;T;T	0.59502	0.26;0.26;0.26;0.26	5.750000	5.750000	0.904690	Fibronectin, type III (4);Peptidase C2, calpain, large subunit, domain III (1);Ribonuclease H-like (1);Immunoglobulin-like fold (1);	.	.	.	.	D	0.82499	0.5050	M	0.91140	3.18	0.584320	D	0.999999	D;D;D;D	0.89917	1.0;1.0;1.0;1.0	D;D;D;D	0.91635	0.999;0.999;0.999;0.999	D	0.85254	0.1046	9	0.87932	D	0	.	20.304600	0.986210	0.0:1.0:0.0:0.0	.	6632;6757;6824;14056	D3DPF9;E7EQE6;E7ET18;Q8WZ42	.;.;.;TITIN_HUMAN	H	13129;6632;6824;6757;6632	ENSP00000343764:R13129H;ENSP00000434586:R6632H;ENSP00000340554:R6824H;ENSP00000352154:R6757H	ENSP00000340554:R6824H	R	-	2	0	TTN	179191340	1	0.714170	1	0.803570	0.995000	0.863560	7.776000	0.855600	2.878000	0.986340	0.650000	0.862430	CGT		TCGA-RB-AA9M-01A-11D-A397-08	TTN-019	PUTATIVE	basic	protein_coding	protein_coding	OTTHUMT00000460310.1	1	0	0	11	258	0	44	0	6.087837e-03	0	3	0	44	2		0	0	0	0	0	2	1	0.998362	11	256	0	42	2		0	0	0	0	0	2	-3.902299	1	1	120812	4	37	1	1	2	3	2.030298	0	0.100001	2	0.112427	0.920000	0.460000	1.000000	1.000000	0.856392	0.920000	1	0.650000	1.000000
DNAH7	56171	broad.mit.edu	37	2	196825327	196825327	+	Missense_Mutation	SNP	G	G	A			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr2:196825327G>A	ENST00000312428.6	-	18	2648	c.2548C>T	c.(2548-2550)Cgc>Tgc	p.R850C		NM_018897.2	NP_061720.2	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	p.R850C(1)		205					TGCCTGGGGCGCAAACCAGGA	0.453000																								1	Substitution - Missense(1)						SO:0001583	missense			ENST00000312428.6	0	1	hg19	CCDS42794.1	.	.	.	.	.	.	.	.	.	.	G	15.840000	2.952760	0.532930	.	.	ENSG00000118997	ENST00000312428	T	0.63417	-0.04	5.740000	5.740000	0.901520	Dynein heavy chain, domain-2 (1);	0.125121	0.53938	D	0.000044	D	0.84392	0.5462	M	0.93375	3.41	0.807220	D	1.000000	D	0.76494	0.999	D	0.64877	0.93	D	0.87323	0.2319	10	0.59425	D	0.04	.	19.919600	0.970820	0.0:0.0:1.0:0.0	.	850	Q8WXX0	DYH7_HUMAN	C	850	ENSP00000311273:R850C	ENSP00000311273:R850C	R	-	1	0	DNAH7	196533572	1	0.714170	1	0.803570	0.963000	0.636630	4.626000	0.612690	2.708000	0.925220	0.650000	0.862430	CGC		TCGA-RB-AA9M-01A-11D-A397-08	DNAH7-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000335202.3	0	0	0	5	465	0	79	0	0	0	1	0	79	2		0	0	0	0	0	2	1	0.937501	5	464	0	78	2		0	0	0	0	0	2	-1.784081	0	1	120856	4	40	1	1	2	3	2.036327	0	0.100001	2	0.113738	0.270000	0.090000	1.000000	0.210000	0.407629	0.270000	0	0.160000	1.000000
MAP2	4133	broad.mit.edu	37	2	210558569	210558569	+	Missense_Mutation	SNP	G	G	C			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr2:210558569G>C	ENST00000360351.4	+	7	2181	c.1675G>C	c.(1675-1677)Gat>Cat	p.D559H	MAP2_ENST00000361559.4_Intron|MAP2_ENST00000447185.1_Missense_Mutation_p.D555H|MAP2_ENST00000199940.6_Intron|MAP2_ENST00000392194.1_Intron	NM_002374.3	NP_002365.3	P11137	MTAP2_HUMAN	microtubule-associated protein 2			124		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		Docetaxel(DB01248)|Estramustine(DB01196)|Paclitaxel(DB01229)	AGCTGAGCTTGATATGCCATT	0.368000													Pancreas(27;423 979 28787 29963)											0							SO:0001583	missense			ENST00000360351.4	1	1	hg19	CCDS2384.1	.	.	.	.	.	.	.	.	.	.	G	10.480000	1.362979	0.246840	.	.	ENSG00000078018	ENST00000360351;ENST00000447185	T;T	0.19938	2.11;2.11	6.160000	5.270000	0.740610	MAP2/Tau projection (1);	0.357573	0.27451	N	0.019304	T	0.30230	0.0758	L	0.50333	1.59	0.093100	N	0.999995	P;P	0.50819	0.925;0.939	P;P	0.54499	0.639;0.754	T	0.18209	-1.0344	10	0.87932	D	0	-4.3757	7.785100	0.290870	0.129:0.2609:0.6101:0.0	.	555;559	P11137-3;P11137	.;MAP2_HUMAN	H	559;555	ENSP00000353508:D559H;ENSP00000392164:D555H	ENSP00000353508:D559H	D	+	1	0	MAP2	210266814	3.580000e-01	0.249470	8.090000e-01	0.324080	0.394000	0.305680	1.674000	0.375440	1.561000	0.495840	0.650000	0.862430	GAT		TCGA-RB-AA9M-01A-11D-A397-08	MAP2-001	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000256521.2	1	0	0	23	388	0	57	0	3.509141e-03	0	2	0	57	2		0	0	0	0	0	2	1	0.999999	23	386	0	56	2		0	0	0	0	0	2	-5.963975	1	1	0	0		1	1	2	3	2.036327	0	0.100001	2	0.113738	0.990000	0.760000	1.000000	1.000000	0.976339	0.990000	1	0.950000	1.000000
C2orf44	80304	broad.mit.edu	37	2	24262247	24262247	+	Missense_Mutation	SNP	G	G	A			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr2:24262247G>A	ENST00000295148.4	-	2	175	c.118C>T	c.(118-120)Cgg>Tgg	p.R40W	C2orf44_ENST00000406895.3_Missense_Mutation_p.R40W	NM_025203.2	NP_079479.1	Q9H6R7	CB044_HUMAN	chromosome 2 open reading frame 44		C2orf44/ALK(2)	24	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				CTGTGAAGCCGCAAATCAGTT	0.507000			T	ALK	NSCLC										Dom	yes		2	2p23.3	80304	chromosome 2 open reading frame 44		E	0							SO:0001583	missense			ENST00000295148.4	0	1	hg19	CCDS1705.1	.	.	.	.	.	.	.	.	.	.	G	8.548000	0.874935	0.173950	.	.	ENSG00000163026	ENST00000295148;ENST00000406895;ENST00000443232	T;T;T	0.43688	3.4;3.4;0.94	5.240000	3.370000	0.385960	.	0.488094	0.24352	N	0.039266	T	0.20740	0.0499	N	0.08118	0	0.093100	N	1.000000	P;P	0.49447	0.61;0.924	B;B	0.40782	0.275;0.34	T	0.05209	-1.0899	10	0.39692	T	0.17	2.1853	7.507200	0.275510	0.1561:0.0:0.7084:0.1355	.	40;40	Q9H6R7-2;Q9H6R7	.;CB044_HUMAN	W	40	ENSP00000295148:R40W;ENSP00000385816:R40W;ENSP00000413426:R40W	ENSP00000295148:R40W	R	-	1	2	C2orf44	24115751	9.730000e-01	0.338510	3.360000e-01	0.255220	0.420000	0.313550	1.353000	0.340450	0.660000	0.309640	0.655000	0.942530	CGG		TCGA-RB-AA9M-01A-11D-A397-08	C2orf44-001	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000246825.1	0	0	0	5	397	0	50	0	2.467431e-03	0	5	0	50	2		0	0	0	0	0	2	1	0.936677	5	394	0	49	2		0	0	0	0	0	2	-1.887659	0	1	121412	9	42	1	1	2	3	2.031292	0	0.100001	2	0.112427	0.310000	0.100000	1.000000	0.250000	0.431727	0.310000	0	0.180000	1.000000
SOCS5	9655	broad.mit.edu	37	2	46986955	46986955	+	Missense_Mutation	SNP	G	G	A			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr2:46986955G>A	ENST00000306503.5	+	2	1458	c.1286G>A	c.(1285-1287)cGa>cAa	p.R429Q	SOCS5_ENST00000394861.2_Missense_Mutation_p.R429Q	NM_014011.4	NP_054730.1	O75159	SOCS5_HUMAN	suppressor of cytokine signaling 5	p.R429L(1)|p.R429Q(1)		22		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.114)		CTGCATGCCCGAATTGAGCAG	0.498000																								2	Substitution - Missense(2)						SO:0001583	missense			ENST00000306503.5	1	1	hg19	CCDS1830.1	.	.	.	.	.	.	.	.	.	.	G	16.210000	3.060002	0.553250	.	.	ENSG00000171150	ENST00000306503;ENST00000394861	D;D	0.89270	-2.49;-2.49	5.430000	3.640000	0.417300	SH2 motif (4);	0.056973	0.64402	D	0.000001	D	0.93916	0.8053	M	0.82716	2.605	0.807220	D	1.000000	D	0.89917	1.0	D	0.76575	0.988	D	0.93888	0.7177	10	0.87932	D	0	-11.2549	11.823900	0.522560	0.1425:0.0:0.8575:0.0	.	429	O75159	SOCS5_HUMAN	Q	429	ENSP00000305133:R429Q;ENSP00000378330:R429Q	ENSP00000305133:R429Q	R	+	2	0	SOCS5	46840459	1	0.714170	7.150000e-01	0.305520	0.898000	0.525720	9.657000	0.985540	0.867000	0.356540	-0.136000	0.146810	CGA		TCGA-RB-AA9M-01A-11D-A397-08	SOCS5-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000250791.2	0	0	0	15	750	0	92	1	2.267176e-01	2	41	0	92	2		0	0	0	0	0	2	1	0.999867	15	747	0	92	2		0	0	0	0	0	2	-2.519424	1	1	0	0		1	1	2	3	2.031292	0	0.100001	2	0.112427	0.430000	0.240000	1.000000	0.390000	0.531238	0.430000	0	0.320000	1.000000
TSPYL6	388951	broad.mit.edu	37	2	54482353	54482353	+	Silent	SNP	C	C	A			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr2:54482353C>A	ENST00000317802.7	-	1	1056	c.936G>T	c.(934-936)gtG>gtT	p.V312V	ACYP2_ENST00000394666.3_Intron|ACYP2_ENST00000607452.1_Intron|ACYP2_ENST00000606865.1_Intron|ACYP2_ENST00000303536.4_Intron	NM_001003937.2	NP_001003937.2	Q8N831	TSYL6_HUMAN	TSPY-like 6			20					TGACCTCATACACCTTTACAA	0.473000																								0							SO:0001819	synonymous_variant			ENST00000317802.7	0	1	hg19	CCDS42682.1																																																																																				TCGA-RB-AA9M-01A-11D-A397-08	TSPYL6-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000324069.3	0	0	0	5	605	0	89		0	0	0	0	89	2		0	0	0	0	0	2	1	0.937769	5	604	0	89	2		0	0	0	0	0	2	-3.111406	1	1	0	0		1	1	2	3	2.031292	0	0.100001	2	0.112427	0.200000	0.060000	1.000000	0.160000	0.351871	0.200000	0	0.120000	1.000000
ARHGAP31	57514	broad.mit.edu	37	3	119101232	119101232	+	Silent	SNP	G	G	A			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr3:119101232G>A	ENST00000264245.4	+	5	1057	c.525G>A	c.(523-525)gcG>gcA	p.A175A		NM_020754.2	NP_065805.2	Q2M1Z3	RHG31_HUMAN	Rho GTPase activating protein 31			67					TGGTGTGGGCGCCAAACCTCC	0.557000													Pancreas(7;176 297 5394 51128 51241)											0							SO:0001819	synonymous_variant			ENST00000264245.4	0	1	hg19	CCDS43135.1																																																																																				TCGA-RB-AA9M-01A-11D-A397-08	ARHGAP31-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000354942.2	0	0	0	5	297	0	34	0	4.772194e-02	0	17	0	34	2		0	0	0	0	0	2	1	0.938047	5	297	0	34	2		0	0	0	0	0	2	-2.420032	0	1	0	0		1	1	2	3	2.030482	0	0.100001	2	0.112427	0.410000	0.140000	1.000000	0.320000	0.507849	0.410000	0	0.240000	1.000000
CNTN4	152330	broad.mit.edu	37	3	2861248	2861248	+	Missense_Mutation	SNP	C	C	T			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr3:2861248C>T	ENST00000397461.1	+	6	821	c.437C>T	c.(436-438)cCg>cTg	p.P146L	CNTN4_ENST00000418658.1_Missense_Mutation_p.P146L|CNTN4_ENST00000427331.1_Missense_Mutation_p.P146L	NM_001206955.1	NP_001193884.1	Q8IWV2	CNTN4_HUMAN	contactin 4			61		Ovarian(110;0.156)			CTGTGTGGCCCGCCACCCCAT	0.448000																								0							SO:0001583	missense			ENST00000397461.1	1	1	hg19	CCDS43041.1	.	.	.	.	.	.	.	.	.	.	C	26.100000	4.708348	0.890180	.	.	ENSG00000144619	ENST00000418658;ENST00000397461;ENST00000427331	T;T;T	0.65178	-0.14;-0.14;-0.14	5.860000	5.860000	0.939800	Immunoglobulin subtype (1);Immunoglobulin I-set (1);Immunoglobulin-like (1);Immunoglobulin-like fold (1);	0.000000	0.85682	D	0.000000	D	0.82641	0.5081	M	0.88979	2.995	0.807220	D	1.000000	D;D	0.89917	1.0;1.0	D;D	0.79108	0.992;0.982	D	0.85330	0.1089	10	0.87932	D	0	.	17.104400	0.866580	0.0:1.0:0.0:0.0	.	146;146	B3KTK4;Q8IWV2	.;CNTN4_HUMAN	L	146	ENSP00000396010:P146L;ENSP00000380602:P146L;ENSP00000413642:P146L	ENSP00000380602:P146L	P	+	2	0	CNTN4	2836248	1	0.714170	8.720000e-01	0.342170	0.971000	0.663760	5.939000	0.701790	2.765000	0.950210	0.655000	0.942530	CCG		TCGA-RB-AA9M-01A-11D-A397-08	CNTN4-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000239236.2	1	0	0	14	212	0	42	0	2.112637e-01	0	13	0	42	2		0	0	0	0	0	2	1	0.999761	14	209	0	41	2		0	0	0	0	0	2	-2.490115	0	1	0	0		1	0	1	1	1.898297	1	0.100001	2	0.052632	0.860000	0.570000	1.000000	0.990000	0.850821	0.860000	1	0.720000	0.970000
ZBTB47	92999	broad.mit.edu	37	3	42703100	42703100	+	Missense_Mutation	SNP	G	G	A			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr3:42703100G>A	ENST00000232974.6	+	3	1878	c.1597G>A	c.(1597-1599)Gcc>Acc	p.A533T	ZBTB47_ENST00000505904.1_Missense_Mutation_p.A79T|ZBTB47_ENST00000457842.3_Missense_Mutation_p.A157T			Q9UFB7	ZBT47_HUMAN	zinc finger and BTB domain containing 47			13					CTACACCATGGCCCACGTGCG	0.522000																								0							SO:0001583	missense			ENST00000232974.6	1	1	hg19	CCDS46805.2	.	.	.	.	.	.	.	.	.	.	G	22.600000	4.313988	0.813580	.	.	ENSG00000114853	ENST00000232974;ENST00000542870;ENST00000457842;ENST00000505904	T;T;T	0.07567	3.18;3.18;3.18	4.840000	4.840000	0.625910	Zinc finger, C2H2-like (1);Zinc finger, C2H2 (3);Zinc finger, C2H2-type/integrase, DNA-binding (1);	0.000000	0.85682	D	0.000000	T	0.30541	0.0768	M	0.75447	2.3	0.807220	D	1.000000	D	0.89917	1.0	D	0.83275	0.996	T	0.03514	-1.1029	10	0.52906	T	0.07	-29.8628	17.928600	0.889910	0.0:0.0:1.0:0.0	.	157	Q9UFB7	ZBT47_HUMAN	T	533;432;157;79	ENSP00000232974:A533T;ENSP00000411491:A157T;ENSP00000420968:A79T	ENSP00000232974:A533T	A	+	1	0	ZBTB47	42678104	1	0.714170	1	0.803570	0.806000	0.455450	9.785000	0.990420	2.230000	0.728870	0.561000	0.740990	GCC		TCGA-RB-AA9M-01A-11D-A397-08	ZBTB47-002	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000343485.3	1	0	0	17	192	0	35	1	7.763571e-01	4	30	0	35	2		0	0	0	0	0	2	1	0.999970	17	191	0	35	2		0	0	0	0	0	2	-3.221917	1	1	0	0		1	0	1	1	1.898297	1	0.100001	2	0.052632	0.910000	0.670000	1.000000	0.990000	0.901181	0.910000	1	0.810000	0.980000
FAM71B	153745	broad.mit.edu	37	5	156590151	156590151	+	Silent	SNP	C	C	T			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr5:156590151C>T	ENST00000302938.4	-	2	1220	c.1125G>A	c.(1123-1125)gcG>gcA	p.A375A		NM_130899.2	NP_570969.2	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B			68	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)		TGCCTGCAAACGCCGCACTCA	0.582000																								0							SO:0001819	synonymous_variant			ENST00000302938.4	0	1	hg19	CCDS4335.1																																																																																				TCGA-RB-AA9M-01A-11D-A397-08	FAM71B-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000252570.2	1	0	0	15	214	1	34		0	0	0	1	34	2		0	0	0	0	0	2	0	0.181686	15	212	1	32	21		0	0	0	0	0	2	-19.136370	1	0	121412	11	41	1	1	2	3	2.040345	0	0.100001	2	0.114610	0.990000	0.810000	1.000000	1.000000	0.987494	0.990000	1	0.990000	1.000000
FLT4	2324	broad.mit.edu	37	5	180048549	180048549	+	Silent	SNP	C	C	G			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr5:180048549C>G	ENST00000261937.6	-	13	2091	c.2013G>C	c.(2011-2013)tcG>tcC	p.S671S	FLT4_ENST00000424276.2_5'UTR|FLT4_ENST00000502649.1_Silent_p.S671S|FLT4_ENST00000393347.3_Silent_p.S671S	NM_182925.4	NP_891555.2	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4			71	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Axitinib(DB06626)|Pazopanib(DB06589)|Regorafenib(DB08896)|Sorafenib(DB00398)|Sunitinib(DB01268)	CACCCTGCACCGACAGGTACT	0.672000													Colon(97;1075 1466 27033 27547 35871)											0							SO:0001819	synonymous_variant			ENST00000261937.6	1	1	hg19	CCDS4457.1																																																																																				TCGA-RB-AA9M-01A-11D-A397-08	FLT4-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000253527.4	1	0	0	12	211	0	40	0	7.694994e-02	0	8	0	40	2		0	0	0	0	0	2	1	0.999098	12	207	0	39	2		0	0	0	0	0	2	-2.929030	1	1	0	0		1	1	2	3	2.040345	0	0.100001	2	0.114610	0.990000	0.630000	1.000000	1.000000	0.952241	0.990000	1	0.870000	1.000000
PDZD2	23037	broad.mit.edu	37	5	32108081	32108081	+	Missense_Mutation	SNP	C	C	T			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr5:32108081C>T	ENST00000438447.1	+	25	8748	c.8360C>T	c.(8359-8361)gCg>gTg	p.A2787V	PDZD2_ENST00000282493.3_Missense_Mutation_p.A2787V|CTD-2152M20.2_ENST00000503441.1_RNA|PDZD2_ENST00000513490.1_3'UTR			O15018	PDZD2_HUMAN	PDZ domain containing 2			148					GTAGGTGGTGCGGCTGAACAA	0.348000																								0							SO:0001583	missense			ENST00000438447.1	0	1	hg19	CCDS34137.1	.	.	.	.	.	.	.	.	.	.	C	25.100000	4.600307	0.870550	.	.	ENSG00000133401	ENST00000438447;ENST00000382161;ENST00000282493	T;T	0.37411	1.2;1.2	5.880000	5.880000	0.946010	PDZ/DHR/GLGF (4);	0.000000	0.56097	D	0.000030	T	0.51890	0.1701	L	0.39898	1.24	0.525010	D	0.999956	D	0.89917	1.0	D	0.97110	1.0	T	0.30149	-0.9988	10	0.29301	T	0.29	.	17.721800	0.883530	0.0:1.0:0.0:0.0	.	2787	O15018	PDZD2_HUMAN	V	2787;2588;2787	ENSP00000402033:A2787V;ENSP00000282493:A2787V	ENSP00000282493:A2787V	A	+	2	0	PDZD2	32143838	1	0.714170	9.990000e-01	0.593770	0.597000	0.368140	6.955000	0.760070	2.778000	0.955600	0.655000	0.942530	GCG		TCGA-RB-AA9M-01A-11D-A397-08	PDZD2-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000366608.1	0	0	0	6	478	0	60	0	1.384985e-03	0	4	0	60	2		0	0	0	0	0	2	1	0.964273	6	474	0	60	2		0	0	0	0	0	2	-1.894700	0	1	121412	2	39	1	1	2	3	2.040345	0	0.100001	2	0.114610	0.300000	0.110000	1.000000	0.250000	0.439996	0.300000	0	0.190000	1.000000
FYB	2533	broad.mit.edu	37	5	39127879	39127879	+	Missense_Mutation	SNP	A	A	T			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr5:39127879A>T	ENST00000351578.6	-	11	2061	c.1871T>A	c.(1870-1872)aTt>aAt	p.I624N	FYB_ENST00000505428.1_Missense_Mutation_p.I624N|FYB_ENST00000515010.1_Missense_Mutation_p.I624N|FYB_ENST00000540520.1_Missense_Mutation_p.I634N|FYB_ENST00000512982.1_Missense_Mutation_p.I624N	NM_199335.3	NP_955367.1	O15117	FYB_HUMAN	FYN binding protein			45	all_lung(31;0.000343)		Epithelial(62;0.235)		CCCATCATAAATGTCATCATC	0.328000																								0							SO:0001583	missense			ENST00000351578.6	0	1	hg19	CCDS47200.1	.	.	.	.	.	.	.	.	.	.	A	15.210000	2.765303	0.495740	.	.	ENSG00000082074	ENST00000351578;ENST00000515010;ENST00000512982;ENST00000505428;ENST00000540520;ENST00000542542	T;T;T;T;T	0.37915	1.47;1.47;1.17;1.17;1.17	5.380000	5.380000	0.774910	.	0.067000	0.64402	D	0.000010	T	0.54208	0.1844	L	0.49126	1.545	0.439420	D	0.996602	D;D	0.76494	0.999;0.998	D;D	0.83275	0.996;0.995	T	0.56038	-0.8045	10	0.66056	D	0.02	-13.8248	14.257900	0.660650	1.0:0.0:0.0:0.0	.	634;624	B4DLN2;O15117	.;FYB_HUMAN	N	624;624;624;624;634;624	ENSP00000316460:I624N;ENSP00000426346:I624N;ENSP00000425845:I624N;ENSP00000427114:I624N;ENSP00000442840:I634N	ENSP00000316460:I624N	I	-	2	0	FYB	39163636	1	0.714170	1	0.803570	0.994000	0.842990	6.035000	0.709400	2.164000	0.680740	0.477000	0.441520	ATT		TCGA-RB-AA9M-01A-11D-A397-08	FYB-001	KNOWN	basic|appris_candidate|CCDS	protein_coding	protein_coding	OTTHUMT00000367098.1	1	0	0	15	152	0	19	0	2.448651e-01	0	10	0	19	2		0	0	0	0	0	2	1	0.999897	15	152	0	19	2		0	0	0	0	0	2	-19.982870	1	1	0	0		1	1	2	3	2.040345	0	0.100001	2	0.114610	0.990000	0.990000	1.000000	1.000000	0.998882	0.990000	1	0.990000	1.000000
CMYA5	202333	broad.mit.edu	37	5	79032394	79032394	+	Silent	SNP	C	C	T			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr5:79032394C>T	ENST00000446378.2	+	2	7837	c.7806C>T	c.(7804-7806)ctC>ctT	p.L2602L		NM_153610.3	NP_705838.3	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5			128		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)			AAGCCATGCTCGCAGAGGCTC	0.398000																								0							SO:0001819	synonymous_variant			ENST00000446378.2	1	1	hg19	CCDS47238.1																																																																																				TCGA-RB-AA9M-01A-11D-A397-08	CMYA5-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000369497.1	1	0	0	18	173	0	32	0	0	0	1	0	32	2		0	0	0	0	0	2	1	0.999986	18	173	0	32	2		0	0	0	0	0	2	-3.221906	1	1	0	0		1	1	2	3	2.040345	0	0.100001	2	0.114610	0.990000	0.990000	1.000000	1.000000	0.999654	0.990000	1	0.990000	1.000000
GRIK2	2898	broad.mit.edu	37	6	102516294	102516294	+	Missense_Mutation	SNP	C	C	T			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr6:102516294C>T	ENST00000421544.1	+	16	3125	c.2635C>T	c.(2635-2637)Cca>Tca	p.P879S	GRIK2_ENST00000369138.1_3'UTR|GRIK2_ENST00000413795.1_3'UTR|GRIK2_ENST00000369137.3_Missense_Mutation_p.P803S|GRIK2_ENST00000369134.4_Missense_Mutation_p.P830S	NM_021956.4	NP_068775.1	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2			83		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		Amobarbital(DB01351)|Aprobarbital(DB01352)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Heptabarbital(DB01354)|Hexobarbital(DB01355)|Methylphenobarbital(DB00849)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Primidone(DB00794)|Secobarbital(DB00418)|Talbutal(DB00306)|Thiopental(DB00599)	AAAACATAAGCCACAGGCCCC	0.423000																								0							SO:0001583	missense			ENST00000421544.1	1	1	hg19	CCDS5048.1	.	.	.	.	.	.	.	.	.	.	C	15.620000	2.886211	0.519080	.	.	ENSG00000164418	ENST00000421544;ENST00000369137;ENST00000369134	T;T;T	0.10288	2.89;3.11;2.9	5.790000	5.790000	0.918170	.	0.049332	0.85682	D	0.000000	T	0.07863	0.0197	L	0.53249	1.67	0.584320	D	0.999999	B	0.16396	0.017	B	0.15484	0.013	T	0.10847	-1.0612	10	0.33141	T	0.24	.	20.036100	0.975580	0.0:1.0:0.0:0.0	.	879	Q13002	GRIK2_HUMAN	S	879;803;830	ENSP00000397026:P879S;ENSP00000358133:P803S;ENSP00000358130:P830S	ENSP00000358130:P830S	P	+	1	0	GRIK2	102622987	1	0.714170	1	0.803570	0.982000	0.717510	7.463000	0.808690	2.745000	0.941140	0.462000	0.415740	CCA		TCGA-RB-AA9M-01A-11D-A397-08	GRIK2-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000043718.1	1	0	0	22	300	0	51	0	1.492248e-02	0	3	0	51	2		0	0	0	0	0	2	1	0.999999	22	296	0	51	2		0	0	0	0	0	2	-7.060106	1	1	0	0		1	0	0	0	1.920210	0	0.100001	2	0.056604	0.970000	0.720000	1.000000	1.000000	0.942193	0.970000	1	0.850000	1.000000
GRM1	2911	broad.mit.edu	37	6	146480607	146480607	+	Missense_Mutation	SNP	G	G	A			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr6:146480607G>A	ENST00000282753.1	+	2	1059	c.824G>A	c.(823-825)cGc>cAc	p.R275H	GRM1_ENST00000492807.2_Missense_Mutation_p.R275H|GRM1_ENST00000355289.4_Missense_Mutation_p.R275H|GRM1_ENST00000507907.1_Missense_Mutation_p.R275H|GRM1_ENST00000361719.2_Missense_Mutation_p.R275H|GRM1_ENST00000392299.2_Missense_Mutation_p.R275H			Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1	p.R275H(1)		126		Ovarian(120;0.0387)			CGACTCTTGCGCAAACTCCGA	0.577000																								1	Substitution - Missense(1)						SO:0001583	missense			ENST00000282753.1	0	1	hg19	CCDS5209.1	.	.	.	.	.	.	.	.	.	.	G	27.500000	4.838921	0.911170	.	.	ENSG00000152822	ENST00000361719;ENST00000392299;ENST00000492807;ENST00000282753;ENST00000355289;ENST00000507907	D;D;D;D;D;D	0.83419	-1.72;-1.72;-1.72;-1.72;-1.72;-1.72	5.320000	5.320000	0.756190	Extracellular ligand-binding receptor (1);	0.053988	0.64402	D	0.000002	D	0.82398	0.5028	L	0.53671	1.685	0.536880	D	0.999976	P;D;P;P	0.64830	0.932;0.994;0.945;0.932	P;P;P;P	0.58780	0.537;0.845;0.667;0.537	D	0.84833	0.0803	10	0.72032	D	0.01	.	9.669800	0.400060	0.1545:0.0:0.8455:0.0	.	275;275;270;275	F8W805;Q13255;Q59HC2;Q13255-2	.;GRM1_HUMAN;.;.	H	275	ENSP00000354896:R275H;ENSP00000376119:R275H;ENSP00000424095:R275H;ENSP00000282753:R275H;ENSP00000347437:R275H;ENSP00000425599:R275H	ENSP00000282753:R275H	R	+	2	0	GRM1	146522300	1	0.714170	1	0.803570	0.994000	0.842990	6.432000	0.734000	2.495000	0.841800	0.655000	0.942530	CGC		TCGA-RB-AA9M-01A-11D-A397-08	GRM1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000042574.1	0	0	0	4	215	0	30		0	0	0	0	30	2		0	0	0	0	0	2	1	0.890095	4	214	0	30	2		0	0	0	0	0	2	-2.674040	1	1	121410	5	38	1	0	0	0	1.920210	0	0.100001	2	0.056604	0.360000	0.120000	0.760000	0.330000	0.397873	0.360000	0	0.220000	0.560000
SCAND3	0	broad.mit.edu	37	6	28543263	28543263	+	Missense_Mutation	SNP	G	G	A			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr6:28543263G>A	ENST00000452236.2	-	3	1836	c.1219C>T	c.(1219-1221)Cgg>Tgg	p.R407W	SCAND3_ENST00000530247.1_5'Flank	NM_052923.1	NP_443155.1						71					TTTAATGACCGCAAAAAAGTT	0.373000																								0							SO:0001583	missense			ENST00000452236.2	0	1	hg19	CCDS34355.1	.	.	.	.	.	.	.	.	.	.	G	15.120000	2.739153	0.490450	.	.	ENSG00000232040	ENST00000452236	T	0.41065	1.01	3.450000	1.470000	0.227460	Integrase, catalytic core (2);Ribonuclease H-like (1);	.	.	.	.	T	0.45538	0.1347	M	0.71581	2.175	0.278850	N	0.939548	D	0.89917	1.0	D	0.75020	0.985	T	0.29027	-1.0025	9	0.87932	D	0	.	9.152700	0.369730	0.0:0.0:0.3848:0.6152	.	407	Q6R2W3	SCND3_HUMAN	W	407	ENSP00000395259:R407W	ENSP00000395259:R407W	R	-	1	2	SCAND3	28651242	4.900000e-01	0.260120	9.990000e-01	0.593770	0.981000	0.711380	0.152000	0.163020	0.208000	0.206260	0.655000	0.942530	CGG		TCGA-RB-AA9M-01A-11D-A397-08	SCAND3-001	KNOWN	basic|appris_principal|exp_conf|CCDS	protein_coding	protein_coding	OTTHUMT00000043551.3	0	0	0	5	334	0	57	0	3.601379e-04	0	2	0	57	2		0	0	0	0	0	2	1	0.937987	5	334	0	57	2		0	0	0	0	0	2	-2.441249	0	1	0	0		1	1	2	3	2.021921	0	0.100001	2	0.110233	0.360000	0.120000	1.000000	0.290000	0.457661	0.360000	0	0.210000	1.000000
MUC17	140453	broad.mit.edu	37	7	100677537	100677537	+	Missense_Mutation	SNP	C	C	G			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr7:100677537C>G	ENST00000306151.4	+	3	2904	c.2840C>G	c.(2839-2841)aCt>aGt	p.T947S		NM_001040105.1	NP_001035194.1	Q685J3	MUC17_HUMAN	mucin 17, cell surface associated			343	Lung NSC(181;0.136)|all_lung(186;0.182)				CTTTCAGCAACTCCTGTTGAC	0.507000																								0							SO:0001583	missense			ENST00000306151.4	1	1	hg19	CCDS34711.1	.	.	.	.	.	.	.	.	.	.	C	2.823000	-0.244331	0.059060	.	.	ENSG00000169876	ENST00000306151	T	0.02323	4.34	0.942000	-0.333000	0.126710	.	.	.	.	.	T	0.01730	0.0055	N	0.19112	0.55	0.093100	N	1.000000	B	0.20459	0.045	B	0.08055	0.003	T	0.49062	-0.8978	9	0.08179	T	0.78	.	6.466400	0.219830	0.0:0.6919:0.3081:0.0	.	947	Q685J3	MUC17_HUMAN	S	947	ENSP00000302716:T947S	ENSP00000302716:T947S	T	+	2	0	MUC17	100464257	5.000000e-03	0.159910	0	0.037020	0.038000	0.132790	1.904000	0.398680	-0.070000	0.129080	0.134000	0.158780	ACT		TCGA-RB-AA9M-01A-11D-A397-08	MUC17-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000347161.1	0	0	0	84	1970	0	334		0	0	0	0	334	2		0	0	0	0	0	2	1	1.000000	80	1725	0	350	2		0	0	0	0	0	2	-5.239423	1	1	0	0		1	1	2	3	2.042720	0	0.100001	2	0.115045	0.860000	0.670000	1.000000	0.820000	0.871606	0.860000	1	0.750000	1.000000
KIAA0895	23366	broad.mit.edu	37	7	36374693	36374693	+	Missense_Mutation	SNP	C	C	T			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr7:36374693C>T	ENST00000297063.6	-	4	1012	c.962G>A	c.(961-963)cGt>cAt	p.R321H	KIAA0895_ENST00000436884.1_Missense_Mutation_p.R218H|KIAA0895_ENST00000480192.1_5'UTR|KIAA0895_ENST00000440378.1_Missense_Mutation_p.R318H|KIAA0895_ENST00000317020.6_Missense_Mutation_p.R270H|Y_RNA_ENST00000364562.1_RNA|KIAA0895_ENST00000453212.1_Missense_Mutation_p.R76H|KIAA0895_ENST00000338533.5_Missense_Mutation_p.R308H	NM_001100425.1	NP_001093895.1	Q8NCT3	K0895_HUMAN	KIAA0895			26					CCAATGCTCACGTGCAGTGGA	0.433000																								0							SO:0001583	missense			ENST00000297063.6	1	1	hg19	CCDS43570.1	.	.	.	.	.	.	.	.	.	.	C	35.000000	5.530230	0.964460	.	.	ENSG00000164542	ENST00000297063;ENST00000338533;ENST00000317020;ENST00000440378;ENST00000436884;ENST00000453212;ENST00000431396	.	.	.	5.840000	5.840000	0.934240	.	0.000000	0.85682	D	0.000000	D	0.83413	0.5249	M	0.77313	2.365	0.807220	D	1.000000	D;D;D;D;D	0.89917	1.0;1.0;1.0;1.0;1.0	D;D;D;D;D	0.97110	1.0;1.0;1.0;0.999;0.999	D	0.84184	0.0441	9	0.72032	D	0.01	-11.6493	20.142000	0.980610	0.0:1.0:0.0:0.0	.	318;218;321;308;270	B7ZLT4;B4DF35;Q8NCT3;Q8NCT3-2;Q8NCT3-3	.;.;K0895_HUMAN;.;.	H	321;308;270;318;218;76;76	.	ENSP00000297063:R321H	R	-	2	0	KIAA0895	36341218	1	0.714170	9.940000e-01	0.499520	0.962000	0.633680	7.393000	0.798510	2.754000	0.945170	0.655000	0.942530	CGT		TCGA-RB-AA9M-01A-11D-A397-08	KIAA0895-001	KNOWN	basic|CCDS	protein_coding	protein_coding	OTTHUMT00000337717.1	1	0	1	24	474	0	69	1	3.378364e-01	5	19	0	69	2		0	0	0	0	0	2	1	1.000000	24	471	0	69	2		0	0	0	0	0	2	-4.886812	1	1	0	0		1	1	2	3	2.033721	0	0.100001	2	0.112865	0.990000	0.660000	1.000000	1.000000	0.937439	0.990000	1	0.820000	1.000000
HGF	3082	broad.mit.edu	37	7	81358937	81358937	+	Nonsense_Mutation	SNP	C	C	A			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr7:81358937C>A	ENST00000222390.5	-	8	1250	c.1024G>T	c.(1024-1026)Gaa>Taa	p.E342*	HGF_ENST00000457544.2_Nonsense_Mutation_p.E337*	NM_000601.4	NP_000592.3	P14210	HGF_HUMAN	hepatocyte growth factor (hepapoietin A; scatter factor)			75					TTGAAATTTTCAGGAGTCATG	0.418000																								0							SO:0001587	stop_gained			ENST00000222390.5	0	1	hg19	CCDS5597.1	.	.	.	.	.	.	.	.	.	.	C	38.000000	6.828463	0.978690	.	.	ENSG00000019991	ENST00000222390;ENST00000457544	.	.	.	5.760000	5.760000	0.907990	.	0.095331	0.64402	D	0.000001	.	.	.	.	.	.	0.807220	D	1.000000	.	.	.	.	.	.	.	.	.	.	0.44086	T	0.13	.	19.976700	0.973120	0.0:1.0:0.0:0.0	.	.	.	.	X	342;337	.	ENSP00000222390:E342X	E	-	1	0	HGF	81196873	9.820000e-01	0.348650	1	0.803570	0.997000	0.918780	2.444000	0.448900	2.702000	0.922790	0.655000	0.942530	GAA		TCGA-RB-AA9M-01A-11D-A397-08	HGF-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000253315.2	0	0	0	5	326	0	53	0	7.323604e-03	0	7	0	53	2		0	0	0	0	0	2	1	0.937503	5	325	0	53	2		0	0	0	0	0	2	-5.424809	1	1	0	0		1	1	2	3	2.042720	0	0.100001	2	0.115045	0.380000	0.130000	1.000000	0.300000	0.497041	0.380000	0	0.230000	1.000000
FER1L6	654463	broad.mit.edu	37	8	125035751	125035751	+	Missense_Mutation	SNP	G	G	A			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr8:125035751G>A	ENST00000522917.1	+	18	2407	c.2201G>A	c.(2200-2202)cGc>cAc	p.R734H	FER1L6-AS1_ENST00000518567.1_RNA|FER1L6_ENST00000399018.1_Missense_Mutation_p.R734H	NM_001039112.2	NP_001034201.2	Q2WGJ9	FR1L6_HUMAN	fer-1-like family member 6			118	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)		GCCTATGCCCGCATCGCCTCC	0.527000																								0							SO:0001583	missense			ENST00000522917.1	0	1	hg19	CCDS43767.1	.	.	.	.	.	.	.	.	.	.	G	29.000000	4.971850	0.929190	0.0	1.2E-4	ENSG00000214814	ENST00000522917;ENST00000399018	T;T	0.79352	-1.26;-1.26	5.810000	5.810000	0.924710	Ferlin B-domain (1);	0.162857	0.34435	U	0.003970	D	0.89550	0.6747	M	0.91663	3.23	0.584320	D	0.999998	D	0.76494	0.999	D	0.70935	0.971	D	0.91017	0.4854	10	0.72032	D	0.01	.	12.885100	0.580380	0.0779:0.0:0.9221:0.0	.	734	Q2WGJ9	FR1L6_HUMAN	H	734	ENSP00000428280:R734H;ENSP00000381982:R734H	ENSP00000381982:R734H	R	+	2	0	FER1L6	125104932	1	0.714170	9.810000e-01	0.438750	0.968000	0.652780	9.072000	0.939860	2.751000	0.943900	0.555000	0.697020	CGC		TCGA-RB-AA9M-01A-11D-A397-08	FER1L6-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000381400.1	0	0	0	6	407	0	51	0	0	0	1	0	51	2		0	0	0	0	0	2	1	0.964173	6	403	0	51	2		0	0	0	0	0	2	-2.105455	0	1	120906	9	42	1	1	2	3	2.015428	0	0.100001	2	0.108912	0.340000	0.130000	1.000000	0.290000	0.434948	0.340000	0	0.210000	0.690000
SLC45A4	57210	broad.mit.edu	37	8	142228865	142228865	+	Missense_Mutation	SNP	C	C	T			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr8:142228865C>T	ENST00000024061.3	-	4	1028	c.721G>A	c.(721-723)Gag>Aag	p.E241K	SLC45A4_ENST00000517878.1_Missense_Mutation_p.E292K|SLC45A4_ENST00000519067.1_Missense_Mutation_p.E241K|SLC45A4_ENST00000433583.2_Missense_Mutation_p.E234K	NM_001080431.1	NP_001073900.1	Q5BKX6	S45A4_HUMAN	solute carrier family 45, member 4			31	all_cancers(97;1.52e-15)|all_epithelial(106;2.92e-14)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)		AGGGCCAGCTCGTGCTCCGAC	0.701000																								0							SO:0001583	missense			ENST00000024061.3	1	1	hg19	CCDS34948.1	.	.	.	.	.	.	.	.	.	.	C	17.300000	3.355746	0.612930	.	.	ENSG00000022567	ENST00000519067;ENST00000517878;ENST00000433583;ENST00000024061	T;T;T;T	0.15834	2.44;2.42;2.42;2.39	5.750000	5.750000	0.904690	.	0.057056	0.64402	D	0.000002	T	0.18676	0.0448	L	0.54323	1.7	0.396890	D	0.971018	B;B;B	0.33238	0.084;0.403;0.066	B;B;B	0.22601	0.016;0.04;0.023	T	0.03695	-1.1012	10	0.26408	T	0.33	-22.7247	20.001500	0.974120	0.0:1.0:0.0:0.0	.	292;241;241	E7EV90;Q5BKX6-3;Q5BKX6-2	.;.;.	K	241;292;234;241	ENSP00000429059:E241K;ENSP00000428137:E292K;ENSP00000400799:E234K;ENSP00000024061:E241K	ENSP00000024061:E241K	E	-	1	0	SLC45A4	142298047	9.970000e-01	0.396340	1	0.803570	0.545000	0.351470	3.460000	0.530280	2.731000	0.935340	0.555000	0.697020	GAG		TCGA-RB-AA9M-01A-11D-A397-08	SLC45A4-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000378571.3	1	0	0	58	788	0	117	1	3.839344e-01	2	17	0	117	2		0	0	0	0	0	2	1	1.000000	56	779	0	114	2		0	0	0	0	0	2	-3.017764	1	1	121382	2	39	1	1	2	3	2.015428	0	0.100001	2	0.108912	0.990000	0.990000	1.000000	1.000000	0.999717	0.990000	1	0.990000	1.000000
SDCBP	6386	broad.mit.edu	37	8	59484848	59484848	+	Missense_Mutation	SNP	T	T	C			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08			T	C	T	T		Valid	Somatic	Phase_I	WXS	RNA			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr8:59484848T>C	ENST00000260130.4	+	4	365	c.215T>C	c.(214-216)gTg>gCg	p.V72A	SDCBP_ENST00000422546.2_Missense_Mutation_p.V72A|SDCBP_ENST00000424270.2_Missense_Mutation_p.V66A|SDCBP_ENST00000413219.2_Missense_Mutation_p.V72A|SDCBP_ENST00000522243.1_3'UTR|SDCBP_ENST00000447267.2_Missense_Mutation_p.V72A|SDCBP_ENST00000520168.1_Missense_Mutation_p.V72A|SDCBP_ENST00000447182.2_Missense_Mutation_p.V72A|SDCBP_ENST00000523483.1_Missense_Mutation_p.V93A	NM_001007068.1|NM_001007069.1|NM_005625.3	NP_001007069.1|NP_001007070.1|NP_005616.2	O00560	SDCB1_HUMAN	syndecan binding protein (syntenin)			8		all_lung(136;0.0271)|Lung NSC(129;0.0351)|all_epithelial(80;0.0554)			AATGTGGCCGTGGTTTCTGGT	0.363000																								0							SO:0001583	missense			ENST00000260130.4	1	1	hg19	CCDS6172.1	.	.	.	.	.	.	.	.	.	.	T	2.468000	-0.322502	0.053500	.	.	ENSG00000137575	ENST00000260130;ENST00000422546;ENST00000447182;ENST00000413219;ENST00000424270;ENST00000523483;ENST00000520168;ENST00000447267	T;T;T;T;T;T;T;T	0.34859	2.84;2.78;2.78;2.84;2.82;2.76;2.77;1.34	5.440000	5.440000	0.795420	.	0.878949	0.10248	N	0.697502	T	0.32164	0.0820	N	0.24115	0.695	0.294520	N	0.858412	B;B;B;B	0.22541	0.0;0.071;0.0;0.0	B;B;B;B	0.31946	0.001;0.138;0.006;0.001	T	0.26503	-1.0101	9	.	.	.	0.0	15.790900	0.783640	0.0:0.0:0.0:1.0	.	72;93;66;72	B4DHN5;G5EA09;O00560-3;O00560	.;.;.;SDCB1_HUMAN	A	72;72;72;72;66;93;72;72	ENSP00000260130:V72A;ENSP00000391687:V72A;ENSP00000409288:V72A;ENSP00000411771:V72A;ENSP00000395351:V66A;ENSP00000428184:V93A;ENSP00000430730:V72A;ENSP00000397820:V72A	.	V	+	2	0	SDCBP	59647402	1	0.714170	1.400000e-02	0.156080	0.004000	0.042600	6.386000	0.731860	2.183000	0.694580	0.533000	0.621200	GTG		TCGA-RB-AA9M-01A-11D-A397-08	SDCBP-001	KNOWN	basic|appris_candidate_longest|CCDS	protein_coding	protein_coding	OTTHUMT00000378193.1	1	0	1	36	533	0	82	1	1	60	358	0	82	2		0	0	0	0	0	2	1	1.000000	36	529	0	80	2		0	0	0	0	0	2	-20.000000	1	1	0	0		1	1	2	3	2.015428	0	0.100001	2	0.108912	0.990000	0.920000	1.000000	1.000000	0.995673	0.990000	1	0.990000	1.000000
FCN1	2219	broad.mit.edu	37	9	137803031	137803031	+	Silent	SNP	G	G	A	rs145090957		TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr9:137803031G>A	ENST00000371806.3	-	8	772	c.681C>T	c.(679-681)gaC>gaT	p.D227D		NM_002003.3	NP_001994.2	O00602	FCN1_HUMAN	ficolin (collagen/fibrinogen domain containing) 1			37		Myeloproliferative disorder(178;0.0333)			TCTCTGCCTCGTCAGCCACCT	0.547000																								0							SO:0001819	synonymous_variant			ENST00000371806.3	1	1	hg19	CCDS6985.1																																																																																				TCGA-RB-AA9M-01A-11D-A397-08	FCN1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000054963.1	1	0	0	70	1090	0	186	0	2.084371e-02	0	4	0	186	2		0	0	0	0	0	2	1	1.000000	70	1075	0	185	2		0	0	0	0	0	2	-10.293830	1	1	121412	5	46	1	0	1	1	1.902555	0	0.100001	2	0.052632	0.950000	0.810000	1.000000	0.990000	0.944490	0.950000	1	0.890000	0.990000
TMEM215	401498	broad.mit.edu	37	9	32784414	32784414	+	Missense_Mutation	SNP	G	G	A			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chr9:32784414G>A	ENST00000342743.5	+	2	598	c.233G>A	c.(232-234)cGc>cAc	p.R78H		NM_212558.2	NP_997723.2	Q68D42	TM215_HUMAN	transmembrane protein 215			12					CTGTGGGTCCGCAAATTGCCC	0.597000																								0							SO:0001583	missense			ENST00000342743.5	0	1	hg19	CCDS6530.1	.	.	.	.	.	.	.	.	.	.	G	8.409000	0.843700	0.169630	.	.	ENSG00000188133	ENST00000342743	.	.	.	5.180000	4.280000	0.508680	.	0.113770	0.38326	N	0.001736	T	0.31040	0.0784	N	0.19112	0.55	0.308560	N	0.734062	B	0.25169	0.119	B	0.17433	0.018	T	0.31530	-0.9940	9	0.56958	D	0.05	-16.3167	9.719600	0.402950	0.0963:0.0:0.9037:0.0	.	78	Q68D42	TM215_HUMAN	H	78	.	ENSP00000345468:R78H	R	+	2	0	TMEM215	32774414	1	0.714170	1	0.803570	0.111000	0.196430	3.258000	0.515070	1.184000	0.429570	-0.258000	0.108200	CGC		TCGA-RB-AA9M-01A-11D-A397-08	TMEM215-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000251701.1	0	0	0	6	467	0	70		0	0	0	0	70	2		0	0	0	0	0	2	1	0.964495	6	464	0	70	2		0	0	0	0	0	2	-2.066409	0	1	0	0		1	0	1	1	1.902555	0	0.100001	2	0.052632	0.250000	0.100000	0.480000	0.230000	0.269359	0.250000	0	0.160000	0.360000
SAGE1	55511	broad.mit.edu	37	X	134993945	134993945	+	Missense_Mutation	SNP	C	C	T			TCGA-RB-AA9M-01A-11D-A397-08	TCGA-RB-AA9M-10A-01D-A39A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2bbf211a-67f7-4120-8fd4-3b3e56a3f1cc	3ca35289-4e81-450e-9e04-6bd0be0b1642	g.chrX:134993945C>T	ENST00000370709.3	+	17	2354	c.2354C>T	c.(2353-2355)gCg>gTg	p.A785V	SAGE1_ENST00000324447.3_Missense_Mutation_p.A785V|SAGE1_ENST00000537770.1_Missense_Mutation_p.A409V|SAGE1_ENST00000535938.1_Missense_Mutation_p.A785V			Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1			55	Acute lymphoblastic leukemia(192;0.000127)				AATGAATTTGCGGTAGGCACC	0.443000																								0							SO:0001583	missense			ENST00000370709.3	0	1	hg19	CCDS14652.1	.	.	.	.	.	.	.	.	.	.	C	0.078000	-1.188862	0.016070	.	.	ENSG00000181433	ENST00000324447;ENST00000535938;ENST00000537770;ENST00000370709	T;T;T;T	0.30182	1.54;1.54;1.58;1.54	2.670000	-5.340000	0.027050	.	7.345260	0.00851	N	0.001834	T	0.08492	0.0211	N	0.00707	-1.245	0.093100	N	1.000000	B;B	0.12630	0.006;0.003	B;B	0.08055	0.003;0.001	T	0.31251	-0.9950	10	0.07482	T	0.82	.	8.327100	0.321650	0.0:0.1179:0.2009:0.6812	.	409;785	F5H2Z8;Q9NXZ1	.;SAGE1_HUMAN	V	785;785;409;785	ENSP00000323191:A785V;ENSP00000445959:A785V;ENSP00000438276:A409V;ENSP00000359743:A785V	ENSP00000323191:A785V	A	+	2	0	SAGE1	134821611	0	0.058580	0	0.037020	0.030000	0.120680	-4.323000	0.002530	-2.402000	0.005770	-1.175000	0.017290	GCG		TCGA-RB-AA9M-01A-11D-A397-08	SAGE1-001	KNOWN	basic|appris_principal|CCDS	protein_coding	protein_coding	OTTHUMT00000058448.1	0	0	0	5	566	0	81	0	0	0	1	0	81	2		0	0	0	0	0	2	1	0.936923	5	563	0	80	2		0	0	0	0	0	2	-2.137665	0	1	0	0		1	0	1	1			0.100001	2	0.100001	0.090000	0.030000	0.190000	0.090000	0.103056	0.090000	0	0.050000	0.140000
