Observations
2016_01_28 Data Snapshot
Table 1. Get Full Table
| Barcode | UUID | Date | Type | Category | Notes |
|---|---|---|---|---|---|
| TCGA-06-0178 | 53abce1d-7e33-4ebd-832f-f3789f67377f | 07/30/2010 | GBM | Normal class but appears diseased | [schaefc]: Genomic data resembles tumor data |
| TCGA-06-0240-01A-01 | (none) | 07/30/2010 | GBM | Tumor class but appears normal | [schaefc]: Dx slide resembles normal tissue |
| TCGA-06-0240-01A-02 | 58955a9c-b15c-41a1-8a98-bc997926c988 | 07/30/2010 | GBM | Tumor class but appears normal | [schaefc]: Dx slide resembles normal tissue |
| TCGA-06-0240-01A-03 | bfd417c5-c8f4-4759-a250-ee8f8aa57272 | 07/30/2010 | GBM | Tumor class but appears normal | [schaefc]: Dx slide resembles normal tissue |
| TCGA-06-A6S1-10A-01D | 0ff5d286-e53d-484e-9400-415687d729b7 | 11/19/2013 | GBM | General | DNA analyte UUID: 0FF5D286-E53D-484E-9400-415687D729B7 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-08-0386-11 | (none) | 07/30/2010 | GBM | Normal class but appears diseased | [schaefc]: Genomic data resembles tumor data |
| TCGA-12-0615 | 141a1ef1-9be6-46d1-b445-305b222727d2 | 10/28/2010 | GBM | Item may not meet study protocol | Case identified (by Duke) as a secondary GBM; original annotation 06/22/09 |
| TCGA-12-0662 | a3cc2845-8a44-4b50-8a3e-17a3c2c3e077 | 10/28/2010 | GBM | Item may not meet study protocol | Case identified (by Duke) as a secondary GBM; original annotation 06/22/09 |
| TCGA-12-0691 | bb0aca6b-55ab-4b24-8e64-29e0c96a9862 | 10/28/2010 | GBM | Item may not meet study protocol | Case identified (by Duke) as a secondary GBM; original annotation 06/22/09 |
| TCGA-12-0769 | 29b34909-9cdc-4a52-b0ab-fa99f3ab17bb | 10/28/2010 | GBM | Item may not meet study protocol | Case identified (by Duke) as a secondary GBM; original annotation 06/22/09 |
| TCGA-12-0818 | e57b296a-80e9-4446-a3d1-3dbfeaf04f5e | 10/28/2010 | GBM | Item may not meet study protocol | Case identified (by Duke) as a secondary GBM; original annotation 06/22/09 |
| TCGA-12-0819 | 025a7401-a65d-4ea0-8b4e-0ba775b0322a | 10/28/2010 | GBM | Item may not meet study protocol | Case identified (by Duke) as a secondary GBM; original annotation 06/22/09 Case identified (by Duke) as a secondary GBM; original annotation 06/22/14 |
| TCGA-27-1838 | 6fc6b9ca-84d8-4647-bbc8-c5ab472b1c02 | 10/09/2015 | GBM | Item may not meet study protocol | Pt treated with oxcarbazepine 11 days prior to procurement. According to the NIH, this drug is an anticonvulsant to treat seizures. |
| TCGA-27-2523 | 737b35e1-d668-4fce-9b6e-76946c7952b6 | 10/09/2015 | GBM | Item may not meet study protocol | Pt treated with dexmethasone and phenytoin sodium 6 days prior to procurement. According to the NIH, dexmethasone is an ancillary or hormone drug; SEER lists phenytoin sodium as an anticonvulsant to treat seizures. |
| TCGA-DU-A6S2-10A-01D | d11de879-b970-4b60-b6cc-c5469b9abf39 | 10/08/2013 | LGG | General | DNA analyte UUID: D11DE879-B970-4B60-B6CC-C5469B9ABF39 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-DU-A6S3-10A-01D | 72d579ee-ef62-4cf0-b2c8-d967e6e3b29d | 10/08/2013 | LGG | General | DNA analyte UUID: 72D579EE-EF62-4CF0-B2C8-D967E6E3B29D was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-DU-A6S6-10A-01D | 35c57159-aa57-43ca-9ee8-1bde4b7f26af | 10/08/2013 | LGG | General | DNA analyte UUID: 35C57159-AA57-43CA-9EE8-1BDE4B7F26AF was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-DU-A6S7-10A-01D | 7c1ef900-08e4-4c8b-83db-29a1321e93c8 | 10/08/2013 | LGG | General | DNA analyte UUID: 7C1EF900-08E4-4C8B-83DB-29A1321E93C8 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-DU-A6S8-10A-01D | 4a28b218-3746-458f-85a4-65841eddffb9 | 10/08/2013 | LGG | General | DNA analyte UUID: 4A28B218-3746-458F-85A4-65841EDDFFB9 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-FG-A70Z-10A-01D | 6f46bc05-324c-47bd-b3a6-b5684d1a72e7 | 11/19/2013 | LGG | General | DNA analyte UUID: 6F46BC05-324C-47BD-B3A6-B5684D1A72E7 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-FG-A710-10A-01D | 0b92f418-f4d0-47c5-b233-0fefbc9def25 | 11/19/2013 | LGG | General | DNA analyte UUID: 0B92F418-F4D0-47C5-B233-0FEFBC9DEF25 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-FG-A711-10A-01D | c093cb0a-fa73-42bd-9206-a40e52ec81c6 | 11/19/2013 | LGG | General | DNA analyte UUID: C093CB0A-FA73-42BD-9206-A40E52EC81C6 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-HT-7483 | 183dd089-e932-4be2-b252-0e8572e7da4e | 03/06/2015 | LGG | Item may not meet study protocol | TSS confirmed that submitted tumor is a recurrence and patient had 2 prior resections before tumor submitted to BCR. Submitted tumor was in same tumor bed as primary. The patient had no prior chemo/radiation treatment. |
| TCGA-R8-A6MO-10C-01D | 624ee58b-68f5-42a3-ac56-c278d3dd6c6f | 11/19/2013 | LGG | General | DNA analyte UUID: 624EE58B-68F5-42A3-AC56-C278D3DD6C6F was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6TS-10A-01D | 971670c8-610e-4731-82fd-1c311c14e769 | 11/19/2013 | LGG | General | DNA analyte UUID: 971670C8-610E-4731-82FD-1C311C14E769 was involved in an extraction protocol deviation wherein an additional column purification step was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6TU-10A-01D | 3e0c51e7-dfb8-4ba3-8534-402890e134bb | 10/08/2013 | LGG | General | DNA analyte UUID: 3E0C51E7-DFB8-4BA3-8534-402890E134BB was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6TW-10A-01D | 152d9334-cebc-49b6-8807-965fadcc5565 | 10/08/2013 | LGG | General | DNA analyte UUID: 152D9334-CEBC-49B6-8807-965FADCC5565 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6TX-10A-01D | ec5cfeeb-fb31-4e85-b698-3ae8957b8f9d | 10/08/2013 | LGG | General | DNA analyte UUID: EC5CFEEB-FB31-4E85-B698-3AE8957B8F9D was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6TY-10A-01D | 6378c82e-2382-483b-a097-bafd1da676f2 | 10/08/2013 | LGG | General | DNA analyte UUID: 6378C82E-2382-483B-A097-BAFD1DA676F2 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6TZ-10A-01D | 966bc35e-1139-4801-a3d9-54dc9b0a13e8 | 10/08/2013 | LGG | General | DNA analyte UUID: 966BC35E-1139-4801-A3D9-54DC9B0A13E8 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6U0-10A-01D | 3a02af22-6d16-4e92-9b8c-46249b3b4659 | 10/08/2013 | LGG | General | DNA analyte UUID: 3A02AF22-6D16-4E92-9B8C-46249B3B4659 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6U1-10A-01D | 4e9a39dc-3b63-4fd5-bfb9-49abbc0fb396 | 11/19/2013 | LGG | General | DNA analyte UUID: 4E9A39DC-3B63-4FD5-BFB9-49ABBC0FB396 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6U2-10A-01D | 2c600422-2be3-4503-b6a1-afc22d652695 | 11/19/2013 | LGG | General | DNA analyte UUID: 2C600422-2BE3-4503-B6A1-AFC22D652695 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6U5-10A-01D | 4c45ca39-62dc-4b63-9614-ff20c1a0c0f6 | 11/19/2013 | LGG | General | DNA analyte UUID: 4C45CA39-62DC-4B63-9614-FF20C1A0C0F6 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6U6-10A-01D | 0013b95d-6e52-4bd0-8dd7-a72f30838bde | 11/19/2013 | LGG | General | DNA analyte UUID: 0013B95D-6E52-4BD0-8DD7-A72F30838BDE was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6U8-01A-21D | 82ef45cd-29ab-4e9f-a5c7-85d2868ad109 | 11/19/2013 | LGG | General | DNA analyte UUID: 82EF45CD-29AB-4E9F-A5C7-85D2868AD109 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6U8-10A-01D | 7f22063a-48f1-4778-bf8a-e7d7d072f3fc | 11/19/2013 | LGG | General | DNA analyte UUID: 7F22063A-48F1-4778-BF8A-E7D7D072F3FC was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6UA-10A-01D | 86d27624-192f-47a4-aa8a-222f1a5e0c3c | 11/19/2013 | LGG | General | DNA analyte UUID: 86D27624-192F-47A4-AA8A-222F1A5E0C3C was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6UB-10A-01D | e33b93af-4055-44fd-873c-206cd3382541 | 11/19/2013 | LGG | General | DNA analyte UUID: E33B93AF-4055-44FD-873C-206CD3382541 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6WD-10A-01D | bcfdafc7-ec31-4e3b-a9f6-84f936daa3e5 | 11/19/2013 | LGG | General | DNA analyte UUID: BCFDAFC7-EC31-4E3B-A9F6-84F936DAA3E5 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6WE-10A-01D | d062e21e-eaca-4897-a072-6a39994f9cf1 | 11/19/2013 | LGG | General | DNA analyte UUID: D062E21E-EACA-4897-A072-6A39994F9CF1 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6WG-01A-11D | edb2be44-e108-4375-9d67-f5e7f0461651 | 11/19/2013 | LGG | General | DNA analyte UUID: EDB2BE44-E108-4375-9D67-F5E7F0461651 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6WG-10A-01D | 9099ad14-a8cf-4c0c-96dd-39d989c90019 | 11/19/2013 | LGG | General | DNA analyte UUID: 9099AD14-A8CF-4C0C-96DD-39D989C90019 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6WH-10A-01D | 0a76195c-7c1b-4789-bc3d-411f9cd25baa | 11/19/2013 | LGG | General | DNA analyte UUID: 0A76195C-7C1B-4789-BC3D-411F9CD25BAA was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6WI-10A-01D | 056cb29f-b552-47f9-9917-1c2af84a4c80 | 11/19/2013 | LGG | General | DNA analyte UUID: 056CB29F-B552-47F9-9917-1C2AF84A4C80 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6WL-10A-01D | 2ca08806-7058-4262-98a0-1a9b88662c7a | 11/19/2013 | LGG | General | DNA analyte UUID: 2CA08806-7058-4262-98A0-1A9B88662C7A was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6WM-10A-01D | a4e6c10b-639b-42b2-94ba-ba042c3d814f | 11/19/2013 | LGG | General | DNA analyte UUID: A4E6C10B-639B-42B2-94BA-BA042C3D814F was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6WN-10A-01D | d7c41735-ec6b-4d8d-8e24-e0078b3dd5d0 | 11/19/2013 | LGG | General | DNA analyte UUID: D7C41735-EC6B-4D8D-8E24-E0078B3DD5D0 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6WO-10A-01D | f13596af-ac01-47db-b06d-422eaae4f714 | 12/03/2013 | LGG | General | DNA analyte UUID: F13596AF-AC01-47DB-B06D-422EAAE4F714 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6WP-10A-01D | 4ad5fa31-73d9-446e-bca0-75b261964e9b | 12/03/2013 | LGG | General | DNA analyte UUID: 4AD5FA31-73D9-446E-BCA0-75B261964E9B was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |
| TCGA-S9-A6WQ-10A-01D | 40385046-32ff-47dc-ad2c-6bca97e6fd96 | 12/03/2013 | LGG | General | DNA analyte UUID: 40385046-32FF-47DC-AD2C-6BCA97E6FD96 was involved in an extraction protocol deviation wherein isopropanol precipitation was used as a means of buffer exchange on the column-eluted analyte. |