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2016_01_28 Data Snapshot
Table 1. Get Full Table
| Barcode | UUID | Date | Type | Category | Notes |
|---|---|---|---|---|---|
| TCGA-01-0628-11A-01D-0358-06 | d125d3f0-0351-43bd-a626-4397184ffa0c | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-01-0628-11A-01D-0358-06 | d125d3f0-0351-43bd-a626-4397184ffa0c | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-01-0628-11A-01D-0358-06 | d125d3f0-0351-43bd-a626-4397184ffa0c | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'. |
| TCGA-01-0629-11A-01D-0358-06 | 504801ae-8c48-4122-871c-eb0f2d3d80a2 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-01-0629-11A-01D-0358-06 | 504801ae-8c48-4122-871c-eb0f2d3d80a2 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-01-0629-11A-01D-0358-06 | 504801ae-8c48-4122-871c-eb0f2d3d80a2 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'. |
| TCGA-01-0630-11A-01D-0358-06 | 2c156dcd-8677-4d7b-82dc-83b341b09ec6 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-01-0630-11A-01D-0358-06 | 2c156dcd-8677-4d7b-82dc-83b341b09ec6 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-01-0630-11A-01D-0358-06 | 2c156dcd-8677-4d7b-82dc-83b341b09ec6 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'. |
| TCGA-01-0631-11A-01D-0358-06 | a5709fe4-5d47-4b76-abe1-c26a3a578ab3 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-01-0631-11A-01D-0358-06 | a5709fe4-5d47-4b76-abe1-c26a3a578ab3 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-01-0631-11A-01D-0358-06 | a5709fe4-5d47-4b76-abe1-c26a3a578ab3 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'. |
| TCGA-01-0633-11A-01D-0358-06 | ff258b7b-6456-4c14-8205-02f34a44141c | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-01-0633-11A-01D-0358-06 | ff258b7b-6456-4c14-8205-02f34a44141c | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-01-0633-11A-01D-0358-06 | ff258b7b-6456-4c14-8205-02f34a44141c | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'. |
| TCGA-01-0636-11A-01D-0358-06 | 49df533c-79f1-4d84-a869-861be2803354 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-01-0636-11A-01D-0358-06 | 49df533c-79f1-4d84-a869-861be2803354 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-01-0636-11A-01D-0358-06 | 49df533c-79f1-4d84-a869-861be2803354 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'. |
| TCGA-01-0637-11A-01D-0358-06 | 6c566d19-fa39-4a3d-ba83-c75148901835 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-01-0637-11A-01D-0358-06 | 6c566d19-fa39-4a3d-ba83-c75148901835 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-01-0637-11A-01D-0358-06 | 6c566d19-fa39-4a3d-ba83-c75148901835 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'. |
| TCGA-01-0638-11A-02D-0358-06 | 81367a91-ab9c-410e-9375-09eb65bd7290 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-01-0638-11A-02D-0358-06 | 81367a91-ab9c-410e-9375-09eb65bd7290 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-01-0638-11A-02D-0358-06 | 81367a91-ab9c-410e-9375-09eb65bd7290 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'. |
| TCGA-01-0639-11A-01D-0358-06 | 66bd63ed-b44e-4e7c-8275-0f7746870e14 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-01-0639-11A-01D-0358-06 | 66bd63ed-b44e-4e7c-8275-0f7746870e14 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-01-0639-11A-01D-0358-06 | 66bd63ed-b44e-4e7c-8275-0f7746870e14 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'. |
| TCGA-01-0642-11A-02D-0358-06 | 3304e88e-43b5-483b-bb6d-045c14bc7e3c | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-01-0642-11A-02D-0358-06 | 3304e88e-43b5-483b-bb6d-045c14bc7e3c | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-01-0642-11A-02D-0358-06 | 3304e88e-43b5-483b-bb6d-045c14bc7e3c | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Normal_LogR.txt'. |
| TCGA-04-1331-01A-01R-1569-13 | 7fbfdb3e-1fd2-4206-8d2e-7f68e4a15844 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-04-1331-01A-01R-1569-13 | 7fbfdb3e-1fd2-4206-8d2e-7f68e4a15844 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1332-01A-01R-1564-13 | 08e7c700-7038-40b5-bec0-2dd402e1a225 | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH rRNA CONTENT |
| TCGA-04-1332-01A-01R-1564-13 | 08e7c700-7038-40b5-bec0-2dd402e1a225 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1337-01A-01R-1564-13 | 42faaf19-95dd-426c-96d5-f3363c2e12ab | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-04-1337-01A-01R-1564-13 | 42faaf19-95dd-426c-96d5-f3363c2e12ab | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1338-01A-01R-1564-13 | ad64ff86-b39c-4704-823d-98fcefd88db6 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-04-1338-01A-01R-1564-13 | ad64ff86-b39c-4704-823d-98fcefd88db6 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1341-01A-01R-1564-13 | d525e6af-f667-4891-97ee-856e6052982f | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-04-1341-01A-01R-1564-13 | d525e6af-f667-4891-97ee-856e6052982f | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1343-01A-01R-1564-13 | e7aeb2b8-2a2d-4175-94f4-0192bd467fed | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-04-1343-01A-01R-1564-13 | e7aeb2b8-2a2d-4175-94f4-0192bd467fed | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1347-01A-01R-1564-13 | 1a59f822-d8fc-4c7a-ad7b-b1b84078e09d | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-04-1347-01A-01R-1564-13 | 1a59f822-d8fc-4c7a-ad7b-b1b84078e09d | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1350-01A-01R-1565-13 | 56822a73-96f7-40ba-a5c2-6eec113b52d9 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-04-1350-01A-01R-1565-13 | 56822a73-96f7-40ba-a5c2-6eec113b52d9 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1351-11A-01D-0458-06 | 68546297-627c-4b94-a79e-cd71e001d8b2 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.2.2.0.B_Allele_Freq.txt'. |
| TCGA-04-1351-11A-01D-0458-06 | 68546297-627c-4b94-a79e-cd71e001d8b2 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.2.2.0.Genotypes.txt'. |
| TCGA-04-1351-11A-01D-0458-06 | 68546297-627c-4b94-a79e-cd71e001d8b2 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.2.2.0.Normal_LogR.txt'. |
| TCGA-04-1356-01A-01R-1569-13 | dc4a5c2f-8b96-4d3b-9553-a02510ba445f | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-04-1356-01A-01R-1569-13 | dc4a5c2f-8b96-4d3b-9553-a02510ba445f | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1361-01A-01R-1565-13 | 746ba0b0-f7a4-4f43-9961-97dccc756e71 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-04-1361-01A-01R-1565-13 | 746ba0b0-f7a4-4f43-9961-97dccc756e71 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1369-01A-02D-1043-01 | 2aa36c4f-8057-498b-832c-127ecff9cb03 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-04-1371-11A-01D-0452-01 | 428cd603-f335-4c08-b215-540f54a42184 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-04-1371-11A-01D-0458-06 | ada83e1b-f234-4d6e-bc39-1067ec458cd0 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.2.2.0.B_Allele_Freq.txt'. |
| TCGA-04-1371-11A-01D-0458-06 | ada83e1b-f234-4d6e-bc39-1067ec458cd0 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.2.2.0.Genotypes.txt'. |
| TCGA-04-1371-11A-01D-0458-06 | ada83e1b-f234-4d6e-bc39-1067ec458cd0 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.2.2.0.Normal_LogR.txt'. |
| TCGA-04-1517-01A-01R-1565-13 | 4ef91e20-24f8-4a34-ac26-b316b37be1cf | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-04-1517-01A-01R-1565-13 | 4ef91e20-24f8-4a34-ac26-b316b37be1cf | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1530-01A-02R-1569-13 | b3ad87d3-1240-4fc9-8e29-14a9a5186319 | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH rRNA CONTENT;LOW 5/3 COVERAGE RATIO |
| TCGA-04-1530-01A-02R-1569-13 | b3ad87d3-1240-4fc9-8e29-14a9a5186319 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1536-01A-01R-1566-13 | 6d6a042c-5d29-410a-bbe0-d03d78f9cee9 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-04-1536-01A-01R-1566-13 | 6d6a042c-5d29-410a-bbe0-d03d78f9cee9 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1542-01A-01R-1566-13 | 2988eb13-a2c0-4cd2-a559-76f0cce2689b | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO |
| TCGA-04-1542-01A-01R-1566-13 | 2988eb13-a2c0-4cd2-a559-76f0cce2689b | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1648-01A-01R-1567-13 | 9248aa41-9572-4b91-8e00-13aa0e3dce12 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-04-1648-01A-01R-1567-13 | 9248aa41-9572-4b91-8e00-13aa0e3dce12 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1651-01A-01R-1567-13 | b8426635-7d02-40e4-b9b9-695ae9a9b3fc | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-04-1651-01A-01R-1567-13 | b8426635-7d02-40e4-b9b9-695ae9a9b3fc | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-04-1655-01A-01R-1566-13 | 520e1d91-a556-4443-8c08-feec29c0c4fe | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-04-1655-01A-01R-1566-13 | 520e1d91-a556-4443-8c08-feec29c0c4fe | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-07-0227-20A-01D-0358-06 | a4b1df01-d7cd-4e8d-a126-028dbb687472 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0358-06 | a4b1df01-d7cd-4e8d-a126-028dbb687472 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0358-06 | a4b1df01-d7cd-4e8d-a126-028dbb687472 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Unpaired_LogR.txt'. |
| TCGA-07-0227-20A-01D-0401-06 | 42727edb-b2f9-4624-8d31-2e3a2e4168dc | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0401-06 | 42727edb-b2f9-4624-8d31-2e3a2e4168dc | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0401-06 | 42727edb-b2f9-4624-8d31-2e3a2e4168dc | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Unpaired_LogR.txt'. |
| TCGA-07-0227-20A-01D-0430-06 | d1d7d345-7610-4277-97f0-174af0c249d0 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0430-06 | d1d7d345-7610-4277-97f0-174af0c249d0 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0430-06 | d1d7d345-7610-4277-97f0-174af0c249d0 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Unpaired_LogR.txt'. |
| TCGA-07-0227-20A-01D-0458-06 | 22b257f3-c2aa-414d-8a21-e0fefa9907f9 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0458-06 | 22b257f3-c2aa-414d-8a21-e0fefa9907f9 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0458-06 | 22b257f3-c2aa-414d-8a21-e0fefa9907f9 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.1.2.0.Unpaired_LogR.txt'. |
| TCGA-07-0227-20A-01D-0474-06 | d61e75f4-83cd-412f-9a0a-3b986376eaad | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.3.1.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0474-06 | d61e75f4-83cd-412f-9a0a-3b986376eaad | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.3.1.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0474-06 | d61e75f4-83cd-412f-9a0a-3b986376eaad | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.3.1.0.Unpaired_LogR.txt'. |
| TCGA-07-0227-20A-01D-0498-06 | adbd9c08-b29c-4b2a-91a0-d1339d375f74 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.4.1.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0498-06 | adbd9c08-b29c-4b2a-91a0-d1339d375f74 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.4.1.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0498-06 | adbd9c08-b29c-4b2a-91a0-d1339d375f74 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.4.1.0.Unpaired_LogR.txt'. |
| TCGA-07-0227-20A-01D-0560-06 | 46472901-3b78-474d-9cbb-aca0eb103bc0 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.6.1.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0560-06 | 46472901-3b78-474d-9cbb-aca0eb103bc0 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.6.1.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0579-06 | 16bfef2e-58d4-4a19-b014-36710f1c88b4 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.7.1.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0579-06 | 16bfef2e-58d4-4a19-b014-36710f1c88b4 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.7.1.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0579-06 | 16bfef2e-58d4-4a19-b014-36710f1c88b4 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.7.1.0.Unpaired_LogR.txt'. |
| TCGA-07-0227-20A-01D-0665-06 | f1c1f5db-b9f5-4914-9e7d-01f1bc1ba798 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.9.0.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0665-06 | f1c1f5db-b9f5-4914-9e7d-01f1bc1ba798 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.9.0.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0665-06 | f1c1f5db-b9f5-4914-9e7d-01f1bc1ba798 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.9.0.0.Unpaired_LogR.txt'. |
| TCGA-07-0227-20A-01D-0805-06 | 43b59109-6ca7-4d05-a0c6-ef754f357961 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.11.0.0.B_Allele_Freq.txt'. |
| TCGA-07-0227-20A-01D-0805-06 | 43b59109-6ca7-4d05-a0c6-ef754f357961 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.11.0.0.Genotypes.txt'. |
| TCGA-07-0227-20A-01D-0805-06 | 43b59109-6ca7-4d05-a0c6-ef754f357961 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.11.0.0.Unpaired_LogR.txt'. |
| TCGA-09-1661-01B-01R-1566-13 | 582e6ac5-273a-423d-9169-6393e1b79393 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-09-1661-01B-01R-1566-13 | 582e6ac5-273a-423d-9169-6393e1b79393 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-09-1665-01B-01R-1566-13 | c06f72e0-e59f-4cbb-8233-1eb6637ea23f | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-09-1665-01B-01R-1566-13 | c06f72e0-e59f-4cbb-8233-1eb6637ea23f | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-09-2053-01C-01R-1568-13 | fd1b7b74-067f-4fc9-820a-b80b5954ee10 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-09-2053-01C-01R-1568-13 | fd1b7b74-067f-4fc9-820a-b80b5954ee10 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-10-0926-01A-01R-1564-13 | 14bb2756-5d32-4e77-9eec-4e5d44b663b2 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-10-0926-01A-01R-1564-13 | 14bb2756-5d32-4e77-9eec-4e5d44b663b2 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-10-0927-01A-02R-1564-13 | 1930e83e-d1aa-459e-9f05-ab347df98dbf | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-10-0927-01A-02R-1564-13 | 1930e83e-d1aa-459e-9f05-ab347df98dbf | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-10-0931-01A-01R-1564-13 | 3dbc3349-abcf-4e54-879e-1de74ee2b334 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-10-0931-01A-01R-1564-13 | 3dbc3349-abcf-4e54-879e-1de74ee2b334 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-10-0933-01A-01R-1569-13 | 484100a8-fa3b-4d8a-9051-de0ba8035cb4 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-10-0933-01A-01R-1569-13 | 484100a8-fa3b-4d8a-9051-de0ba8035cb4 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-10-0934-01A-02R-1564-13 | 5b759ce4-2632-4d85-89fe-30a85069e9a8 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-10-0934-01A-02R-1564-13 | 5b759ce4-2632-4d85-89fe-30a85069e9a8 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-10-0937-01A-02R-1564-13 | 6392a07a-79e2-4272-abfe-329d1029bb09 | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO |
| TCGA-10-0937-01A-02R-1564-13 | 6392a07a-79e2-4272-abfe-329d1029bb09 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-10-0938-01A-02R-1564-13 | f7b5774e-bfb3-4e6d-8a24-009f3c294109 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-10-0938-01A-02R-1564-13 | f7b5774e-bfb3-4e6d-8a24-009f3c294109 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0714-01A-01R-1564-13 | da337502-6fef-45b6-8770-b2f0889cd802 | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH rRNA CONTENT |
| TCGA-13-0714-01A-01R-1564-13 | da337502-6fef-45b6-8770-b2f0889cd802 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0720-01A-01R-1564-13 | 1fe43034-df2b-4bef-be77-07dbb68083a4 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-13-0720-01A-01R-1564-13 | 1fe43034-df2b-4bef-be77-07dbb68083a4 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0724-01A-01R-1564-13 | fc6df206-8c77-486c-bc38-06b6cf20139d | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0724-01A-01R-1564-13 | fc6df206-8c77-486c-bc38-06b6cf20139d | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0725-01A-01R-1564-13 | 5551b356-0f0f-4e21-a2f5-cf539b5a490b | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0725-01A-01R-1564-13 | 5551b356-0f0f-4e21-a2f5-cf539b5a490b | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0726-01A-01R-1564-13 | 3dd100f9-9261-4e1c-9bbb-95a2c56abfb6 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0726-01A-01R-1564-13 | 3dd100f9-9261-4e1c-9bbb-95a2c56abfb6 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0727-01A-01R-1564-13 | 38957b36-539f-42f1-bd83-f8eb348165a4 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0727-01A-01R-1564-13 | 38957b36-539f-42f1-bd83-f8eb348165a4 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0760-01A-01R-1564-13 | 12f60ee0-fb87-4ac8-9e91-e6d643064c6d | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-13-0760-01A-01R-1564-13 | 12f60ee0-fb87-4ac8-9e91-e6d643064c6d | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0762-01A-01R-1564-13 | c2f1b1b8-f914-4665-a779-901ebb41965f | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0762-01A-01R-1564-13 | c2f1b1b8-f914-4665-a779-901ebb41965f | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0765-01A-01D-0356-01 | f5037f0b-56fa-450b-9942-84884ddc7249 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-13-0765-01A-01R-1564-13 | d5c33d85-54da-455b-aa65-aaec79af99b0 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0765-01A-01R-1564-13 | d5c33d85-54da-455b-aa65-aaec79af99b0 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0766-01A-02R-1564-13 | 30be1179-7922-4af7-b234-270fd88a2965 | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO |
| TCGA-13-0766-01A-02R-1564-13 | 30be1179-7922-4af7-b234-270fd88a2965 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0768-01A-01R-1569-13 | f6907b8b-95a3-47a8-abe0-239c6ae60482 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0768-01A-01R-1569-13 | f6907b8b-95a3-47a8-abe0-239c6ae60482 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0795-01A-01R-1564-13 | 5345eef4-ee81-4128-96fb-85c29750cc96 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0795-01A-01R-1564-13 | 5345eef4-ee81-4128-96fb-85c29750cc96 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0797-01A-01R-1564-13 | 9bd35257-52b8-4277-9cc9-48c5f316932b | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0797-01A-01R-1564-13 | 9bd35257-52b8-4277-9cc9-48c5f316932b | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0804-01A-01R-1564-13 | 220b144c-9f9c-459a-b332-5d6e5dedb686 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0804-01A-01R-1564-13 | 220b144c-9f9c-459a-b332-5d6e5dedb686 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0884-01B-01R-1565-13 | 5339b819-0e19-4b7d-a098-6f58afc07180 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-13-0884-01B-01R-1565-13 | 5339b819-0e19-4b7d-a098-6f58afc07180 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0885-01A-02R-1569-13 | e0f48d4d-4c10-4b83-9a13-9427a08371d3 | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH rRNA CONTENT;LOW 5/3 COVERAGE RATIO |
| TCGA-13-0885-01A-02R-1569-13 | e0f48d4d-4c10-4b83-9a13-9427a08371d3 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0886-01A-01R-1569-13 | eac4bb8e-83fe-4fdf-822d-8fb126b1da1e | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH rRNA CONTENT;LOW 5/3 COVERAGE RATIO |
| TCGA-13-0886-01A-01R-1569-13 | eac4bb8e-83fe-4fdf-822d-8fb126b1da1e | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0887-01A-01R-1564-13 | def55de4-e4eb-4693-aa54-889cd0f88051 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0887-01A-01R-1564-13 | def55de4-e4eb-4693-aa54-889cd0f88051 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0888-01A-01R-1564-13 | b6ee33d9-26fc-491a-90af-25f3da976da0 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0888-01A-01R-1564-13 | b6ee33d9-26fc-491a-90af-25f3da976da0 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0891-01A-01R-1564-13 | c6666bbe-77cd-497e-88b4-ff73dcf6f399 | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO |
| TCGA-13-0891-01A-01R-1564-13 | c6666bbe-77cd-497e-88b4-ff73dcf6f399 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0894-01B-01D-0452-01 | 3b931696-b77d-417d-b187-50aef6ece607 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-13-0900-01B-01R-1565-13 | 48c027ac-0580-43aa-9356-f56b3d897127 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-13-0900-01B-01R-1565-13 | 48c027ac-0580-43aa-9356-f56b3d897127 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0901-01B-01R-1565-13 | 4320fb38-5508-4ba7-87f1-43c4dc70854c | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0901-01B-01R-1565-13 | 4320fb38-5508-4ba7-87f1-43c4dc70854c | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0905-01B-01R-1565-13 | 6deb1bf0-273a-47ba-9698-3d38ab05f02c | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0905-01B-01R-1565-13 | 6deb1bf0-273a-47ba-9698-3d38ab05f02c | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0906-01A-01R-1564-13 | 7fa0eba3-8a33-425d-a7fb-2fa169e5f8e6 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0906-01A-01R-1564-13 | 7fa0eba3-8a33-425d-a7fb-2fa169e5f8e6 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0908-01B-01R-1565-13 | 5324831d-94be-40c6-bcb1-5b29bbbaab1b | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH MITOCHONDRIAL CONTENT |
| TCGA-13-0908-01B-01R-1565-13 | 5324831d-94be-40c6-bcb1-5b29bbbaab1b | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0911-01A-01R-1564-13 | d47147ed-fdb1-4921-9db7-1e0aae32aacb | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0911-01A-01R-1564-13 | d47147ed-fdb1-4921-9db7-1e0aae32aacb | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0913-02A-01R-1564-13 | 733f0607-6c6b-4385-9868-fa6f155a9a2e | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO |
| TCGA-13-0913-02A-01R-1564-13 | 733f0607-6c6b-4385-9868-fa6f155a9a2e | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0919-01A-01R-1564-13 | 36e20dfd-0d88-47bd-bf1f-164e069019d1 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0919-01A-01R-1564-13 | 36e20dfd-0d88-47bd-bf1f-164e069019d1 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-0923-01A-01R-1564-13 | b75de387-11ae-4d46-81a1-54d15ecae42a | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-0923-01A-01R-1564-13 | b75de387-11ae-4d46-81a1-54d15ecae42a | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1404-01A-01R-1565-13 | 5a24a912-7e38-4d60-a1b9-56023d2a321a | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1404-01A-01R-1565-13 | 5a24a912-7e38-4d60-a1b9-56023d2a321a | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1407-01A-01R-1565-13 | 2afc4437-8c6b-4f79-804c-b37ed04c4c77 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-13-1407-01A-01R-1565-13 | 2afc4437-8c6b-4f79-804c-b37ed04c4c77 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1408-01A-01R-1565-13 | cacecdfe-9e01-409c-b45b-5076281b9da8 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1408-01A-01R-1565-13 | cacecdfe-9e01-409c-b45b-5076281b9da8 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1409-01A-01R-1565-13 | 850f50c3-4d01-4838-bd3a-641942bb2855 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1409-01A-01R-1565-13 | 850f50c3-4d01-4838-bd3a-641942bb2855 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1477-01A-01R-1565-13 | eb7fbe7d-ca45-4f35-b384-0d396349da06 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1477-01A-01R-1565-13 | eb7fbe7d-ca45-4f35-b384-0d396349da06 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1482-01A-01R-1565-13 | 197bc1c2-fb72-422a-b6b0-d07cf5b737ef | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-13-1482-01A-01R-1565-13 | 197bc1c2-fb72-422a-b6b0-d07cf5b737ef | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1483-01A-01R-1565-13 | 1120f746-aeb6-457a-946e-46ed665a9211 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1483-01A-01R-1565-13 | 1120f746-aeb6-457a-946e-46ed665a9211 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1485-01A-02R-1565-13 | 50f08f95-3c5a-4d6b-bacc-ccb4a3a720b8 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1485-01A-02R-1565-13 | 50f08f95-3c5a-4d6b-bacc-ccb4a3a720b8 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1487-01A-01R-1565-13 | 55704c3f-7261-4ab1-bb1e-d8957bfd8952 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1487-01A-01R-1565-13 | 55704c3f-7261-4ab1-bb1e-d8957bfd8952 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1488-01A-01R-1565-13 | fbd513d6-46e8-48f7-9dc3-f7369ad0f3c7 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-13-1488-01A-01R-1565-13 | fbd513d6-46e8-48f7-9dc3-f7369ad0f3c7 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1489-01A-01R-1565-13 | dcb03592-9f67-49bf-bc78-d89d69de14a8 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1489-01A-01R-1565-13 | dcb03592-9f67-49bf-bc78-d89d69de14a8 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1489-02A-01D-0803-01 | cd423cd2-5b84-4397-b64c-967f74a1186f | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-13-1492-01A-01R-1565-13 | 3991212e-874f-4c0c-a822-4a149ecda1b2 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1492-01A-01R-1565-13 | 3991212e-874f-4c0c-a822-4a149ecda1b2 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1495-01A-01R-1565-13 | 845d11ec-7fc7-4498-a0f4-1187413c5914 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1495-01A-01R-1565-13 | 845d11ec-7fc7-4498-a0f4-1187413c5914 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1496-01A-01R-1565-13 | cbdfb183-b1af-42ed-a47a-5fee3ac1059e | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1496-01A-01R-1565-13 | cbdfb183-b1af-42ed-a47a-5fee3ac1059e | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1498-10A-01D-0472-01 | 0b7f2a7c-9a87-4c38-9048-712c381c905a | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-13-1499-01A-01R-1565-13 | 1f677d4c-6feb-4a3a-9f12-ba1d43920a80 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1499-01A-01R-1565-13 | 1f677d4c-6feb-4a3a-9f12-ba1d43920a80 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1501-01A-01R-1565-13 | d6c7ab9b-7928-4b66-9fc7-7d3c8146e92d | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-13-1501-01A-01R-1565-13 | d6c7ab9b-7928-4b66-9fc7-7d3c8146e92d | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1509-01A-01R-1565-13 | 6e57a2e1-2894-421d-bdeb-7e532a78bdeb | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-13-1509-01A-01R-1565-13 | 6e57a2e1-2894-421d-bdeb-7e532a78bdeb | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1509-10A-01D-0472-01 | 2964b8d8-f36c-46b3-bbce-b486516aa055 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-13-1510-01A-02R-1565-13 | b75db551-4254-4736-a089-0a38890e7778 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-13-1510-01A-02R-1565-13 | b75db551-4254-4736-a089-0a38890e7778 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-13-1817-01A-01D-0803-01 | 2a4907d1-d41e-4fb0-875d-3d61448cf975 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-13-1817-02A-01D-0803-01 | 9959be6d-ed76-4aa6-995e-d950a11d923f | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-13-1819-02A-01D-0803-01 | 72ad27c7-97de-48bf-9857-61ab7488e078 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-13-2066-01A-01D-1043-01 | bdda429f-5053-4937-8488-19a21aa95048 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-20-0987-01A-02R-1564-13 | 40dafb8b-7311-4ee3-b5bc-9c9c7ffb8cce | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO |
| TCGA-20-0987-01A-02R-1564-13 | 40dafb8b-7311-4ee3-b5bc-9c9c7ffb8cce | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-20-0991-01A-01R-1564-13 | 70004d87-7c1b-40e6-b246-04bb349dca6c | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-20-0991-01A-01R-1564-13 | 70004d87-7c1b-40e6-b246-04bb349dca6c | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-20-1686-01A-01R-1566-13 | efabaf9d-2e46-4d4e-9b1b-763ec4d8d537 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-20-1686-01A-01R-1566-13 | efabaf9d-2e46-4d4e-9b1b-763ec4d8d537 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1021-01B-01R-1564-13 | 9819f772-6987-47d5-8ab4-235ac2b993e2 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-23-1021-01B-01R-1564-13 | 9819f772-6987-47d5-8ab4-235ac2b993e2 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1021-10A-01D-0428-01 | 54067266-ed79-46af-998e-e521a140e77f | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-23-1022-01A-01R-1564-13 | 2eeb258f-bbc2-4412-9673-cc39915da304 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-23-1022-01A-01R-1564-13 | 2eeb258f-bbc2-4412-9673-cc39915da304 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1023-01R-01D-0803-01 | 76fa62b1-c7f9-4264-a862-f0b66eae7966 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-23-1024-01A-02R-1564-13 | 467ceace-18c4-436b-a8f6-842794c5dfa5 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-23-1024-01A-02R-1564-13 | 467ceace-18c4-436b-a8f6-842794c5dfa5 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1028-01A-01R-1564-13 | 8f6e45b3-2857-4eb8-a723-5429f7fd8f0c | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-23-1028-01A-01R-1564-13 | 8f6e45b3-2857-4eb8-a723-5429f7fd8f0c | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1030-01A-02R-1564-13 | 0cdd0255-c7b2-4cbc-8306-37e74d295324 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-23-1030-01A-02R-1564-13 | 0cdd0255-c7b2-4cbc-8306-37e74d295324 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1032-01A-02R-1564-13 | 494182b5-dc71-4f11-add9-c29d2378768d | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-23-1032-01A-02R-1564-13 | 494182b5-dc71-4f11-add9-c29d2378768d | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1107-01A-01D-0428-01 | e758a0be-9dc0-40de-80f6-7f22ce5bbb38 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-23-1107-01A-01R-1564-13 | 2b25b605-1d45-499e-99ed-ad9b4a7722a5 | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO |
| TCGA-23-1107-01A-01R-1564-13 | 2b25b605-1d45-499e-99ed-ad9b4a7722a5 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1110-01A-01R-1564-13 | d93e1f93-20d0-493f-8b54-939fa4ba64f9 | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY |
| TCGA-23-1110-01A-01R-1564-13 | d93e1f93-20d0-493f-8b54-939fa4ba64f9 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1113-01A-01R-1564-13 | 88656b94-cd24-4c4c-b625-635ef692cf13 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-23-1113-01A-01R-1564-13 | 88656b94-cd24-4c4c-b625-635ef692cf13 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1116-01A-01R-1564-13 | ab28a926-0266-4602-8e90-529934cf43ab | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-23-1116-01A-01R-1564-13 | ab28a926-0266-4602-8e90-529934cf43ab | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1118-01A-01R-1564-13 | 9e73d9f4-dd7c-439f-a8c5-236311e3facf | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-23-1118-01A-01R-1564-13 | 9e73d9f4-dd7c-439f-a8c5-236311e3facf | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-1119-01A-02R-1565-13 | a0e6000c-2e04-4e12-bce6-ef9c29f04252 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-23-1119-01A-02R-1565-13 | a0e6000c-2e04-4e12-bce6-ef9c29f04252 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-23-2647-01A-01D-1043-01 | 246c6949-4565-4f69-8744-02e05764a274 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-23-2649-01A-01D-1043-01 | 9b345bb6-89dc-403a-b97b-3d4565942415 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-24-0966-01A-01R-1564-13 | 63a8de0c-927c-4faf-a596-841871ceb8f9 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-24-0966-01A-01R-1564-13 | 63a8de0c-927c-4faf-a596-841871ceb8f9 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-0968-01A-01R-1569-13 | b2f7c706-ec61-45d4-9394-44921dc99f8c | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-24-0968-01A-01R-1569-13 | b2f7c706-ec61-45d4-9394-44921dc99f8c | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-0970-01B-01R-1565-13 | b8ca62bf-dd6f-4984-b2c5-4d077d46d783 | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH MITOCHONDRIAL CONTENT |
| TCGA-24-0970-01B-01R-1565-13 | b8ca62bf-dd6f-4984-b2c5-4d077d46d783 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-0979-01A-01R-1565-13 | 639429a9-c1d3-410d-828a-c3b44d648609 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-24-0979-01A-01R-1565-13 | 639429a9-c1d3-410d-828a-c3b44d648609 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-0982-01A-01R-1565-13 | ae158b16-5d93-42d5-a793-3294629af24d | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-24-0982-01A-01R-1565-13 | ae158b16-5d93-42d5-a793-3294629af24d | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-0982-10C-01D-0428-01 | 05ab120d-7f85-4eb2-aebb-fa863bb85236 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-24-1104-01A-01R-1565-13 | 3947333f-7cc5-4044-bc18-01a8f4426017 | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH MITOCHONDRIAL CONTENT |
| TCGA-24-1104-01A-01R-1565-13 | 3947333f-7cc5-4044-bc18-01a8f4426017 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-1105-01A-01R-1565-13 | fd57adc4-669c-4916-a2f5-e5f92cb0adb6 | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH MITOCHONDRIAL CONTENT |
| TCGA-24-1105-01A-01R-1565-13 | fd57adc4-669c-4916-a2f5-e5f92cb0adb6 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-1426-01A-01R-1565-13 | 8cd9abeb-c09e-4281-a8c8-1b426796d51e | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-24-1426-01A-01R-1565-13 | 8cd9abeb-c09e-4281-a8c8-1b426796d51e | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-1431-01A-01R-1566-13 | 0e968ed4-9fbd-482b-b91d-ce7190dc91ed | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-24-1431-01A-01R-1566-13 | 0e968ed4-9fbd-482b-b91d-ce7190dc91ed | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-1464-01A-01R-1566-13 | 6eb0fbff-f1b8-4544-91e2-cd593b631ead | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-24-1464-01A-01R-1566-13 | 6eb0fbff-f1b8-4544-91e2-cd593b631ead | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-1470-01A-01R-1566-13 | f2066443-2f17-4279-a993-f07961259108 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-24-1470-01A-01R-1566-13 | f2066443-2f17-4279-a993-f07961259108 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-1471-01A-01R-1566-13 | a30e415d-8fe3-4d1d-b183-381ab431bb4a | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH MITOCHONDRIAL CONTENT |
| TCGA-24-1471-01A-01R-1566-13 | a30e415d-8fe3-4d1d-b183-381ab431bb4a | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-1565-01A-01R-1566-13 | 0d80226b-8c70-44ab-a6d9-f054d89330f3 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO;HIGH MITOCHONDRIAL CONTENT |
| TCGA-24-1565-01A-01R-1566-13 | 0d80226b-8c70-44ab-a6d9-f054d89330f3 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-1845-01A-01R-1567-13 | 78b612c0-5323-46e9-962e-497ad3c877c1 | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH MITOCHONDRIAL CONTENT |
| TCGA-24-1845-01A-01R-1567-13 | 78b612c0-5323-46e9-962e-497ad3c877c1 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-1923-01A-01R-1567-13 | d34ae25d-8073-4129-a1b8-3f43e19af73b | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-24-1923-01A-01R-1567-13 | d34ae25d-8073-4129-a1b8-3f43e19af73b | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-24-2036-10A-01D-0663-01 | ed2274aa-1448-45b1-9bc4-c70cad6d7b0b | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-24-2280-01A-01R-1568-13 | e39a23c8-1bc3-4bfb-9b1e-3075f98782fa | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-24-2280-01A-01R-1568-13 | e39a23c8-1bc3-4bfb-9b1e-3075f98782fa | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-25-1877-01A-01R-1567-13 | 39639797-675b-4f3c-9959-7e3344bea0d1 | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH rRNA CONTENT |
| TCGA-25-1877-01A-01R-1567-13 | 39639797-675b-4f3c-9959-7e3344bea0d1 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-25-2404-10A-01D-0704-01 | 7ce44622-915c-4c68-a4aa-149d0aa321e5 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-29-1690-10A-01D-0559-01 | ad777ab7-4fbb-43d0-bbb6-9a05f3a4ee72 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-29-1692-02A-01D-0803-01 | d6562c87-65ed-4155-930f-d01604efa9cd | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-29-1705-02A-01R-1567-13 | cc3afd8c-3639-437f-a22b-aadc9f6c5aaa | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH rRNA CONTENT |
| TCGA-29-1705-02A-01R-1567-13 | cc3afd8c-3639-437f-a22b-aadc9f6c5aaa | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-29-1707-02A-01R-1567-13 | 5a1abe99-6d9f-4534-a32c-30672353ee04 | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH MITOCHONDRIAL CONTENT |
| TCGA-29-1707-02A-01R-1567-13 | 5a1abe99-6d9f-4534-a32c-30672353ee04 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-29-1766-01A-01R-1567-13 | fb381f7f-a327-49e1-a13a-bca5a06047d3 | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY |
| TCGA-29-1766-01A-01R-1567-13 | fb381f7f-a327-49e1-a13a-bca5a06047d3 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-29-1768-01A-01R-1567-13 | d327786c-eb87-43b2-abd1-7bb9446cf34f | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY |
| TCGA-29-1768-01A-01R-1567-13 | d327786c-eb87-43b2-abd1-7bb9446cf34f | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-29-1769-01A-01R-1567-13 | f2ac7109-1071-47f7-af2a-2d655c475427 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-29-1769-01A-01R-1567-13 | f2ac7109-1071-47f7-af2a-2d655c475427 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-29-1770-02A-01D-0803-01 | dea4702d-8a1e-4b70-b463-1ead2345e265 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-29-1774-01A-01R-1567-13 | bdb953e0-32fc-4f28-b40f-aa870a2bccb6 | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH rRNA CONTENT |
| TCGA-29-1774-01A-01R-1567-13 | bdb953e0-32fc-4f28-b40f-aa870a2bccb6 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-29-1777-01A-01R-1567-13 | cbeba637-1a32-45f1-83f3-614725665436 | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY |
| TCGA-29-1777-01A-01R-1567-13 | cbeba637-1a32-45f1-83f3-614725665436 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-30-1714-01A-02R-1567-13 | c990f93e-c4e1-4192-b948-31a5bda0ff72 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-30-1714-01A-02R-1567-13 | c990f93e-c4e1-4192-b948-31a5bda0ff72 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-30-1853-01A-02R-1567-13 | fc32468d-de77-4e0e-b1a2-203ac119cb02 | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO |
| TCGA-30-1853-01A-02R-1567-13 | fc32468d-de77-4e0e-b1a2-203ac119cb02 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-30-1856-10A-01D-0577-01 | b45e8cd2-3cc5-4b5e-a304-f6c84961f441 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-30-1857-01A-02R-1569-13 | 7fc46368-c523-4936-84e3-bb3f77db7c48 | 02/16/2015 | OV | Center QC failed | mRNA-seq: LOW 5'/3' COVERAGE RATIO |
| TCGA-30-1857-01A-02R-1569-13 | 7fc46368-c523-4936-84e3-bb3f77db7c48 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-30-1866-01A-02R-1568-13 | e2c174f6-eac3-449e-879c-9335ccf4ccd6 | 07/20/2012 | OV | Center QC failed | RNA-seq:LOW 5/3 COVERAGE RATIO |
| TCGA-30-1866-01A-02R-1568-13 | e2c174f6-eac3-449e-879c-9335ccf4ccd6 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-30-1892-01A-01R-1568-13 | bb8dc795-80ff-4b42-8cf8-9f9716c13967 | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY |
| TCGA-30-1892-01A-01R-1568-13 | bb8dc795-80ff-4b42-8cf8-9f9716c13967 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-36-2542-10A-01D-1043-01 | 698c2e32-526b-48a7-938f-5820388385f5 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-36-2551-10A-01D-1043-01 | f0cffbf3-ce0c-4d21-b581-c145ea8f44d7 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-42-2590-10A-01D-1043-01 | b3a9cabe-f7a2-41c1-a1c7-d6be1b7ccc79 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-57-1586-01A-02R-1567-13 | 2dcac69e-7167-4979-8327-be74d2c1202b | 07/20/2012 | OV | Center QC failed | RNA-seq:HIGH MITOCHONDRIAL CONTENT |
| TCGA-57-1586-01A-02R-1567-13 | 2dcac69e-7167-4979-8327-be74d2c1202b | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-61-1721-01A-01D-0650-06 | b474af7a-aa6d-4efc-b805-ee70f89b9cc4 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.8.1.0.B_Allele_Freq.txt'. |
| TCGA-61-1721-01A-01D-0650-06 | b474af7a-aa6d-4efc-b805-ee70f89b9cc4 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.8.1.0.Genotypes.txt'. |
| TCGA-61-1721-01A-01D-0650-06 | b474af7a-aa6d-4efc-b805-ee70f89b9cc4 | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.8.1.0.Unpaired_LogR.txt'. |
| TCGA-61-1721-11A-01D-0650-06 | 294d386a-fc2f-4b6d-927a-a25080c01b2e | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.8.1.0.B_Allele_Freq.txt'. |
| TCGA-61-1721-11A-01D-0650-06 | 294d386a-fc2f-4b6d-927a-a25080c01b2e | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.8.1.0.Genotypes.txt'. |
| TCGA-61-1721-11A-01D-0650-06 | 294d386a-fc2f-4b6d-927a-a25080c01b2e | 09/28/2012 | OV | Item flagged DNU | SDRF in hudsonalpha.org_OV.Human1MDuo.mage-tab.9.4.0 flagged aliquot to be excluded for analysis based on file 'hudsonalpha.org_OV.Human1MDuo.8.1.0.Normal_LogR.txt'. |
| TCGA-61-1901-11A-01D-0577-01 | 157b9cab-451c-4f38-9146-887af1cb4986 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-61-1911-01A-01R-1567-13 | 1ec9cbc3-fd76-4d44-be24-8ff296d3c4c9 | 07/20/2012 | OV | Center QC failed | RNA-seq:INSUFFICIENT INPUT MATERIAL,LOW SEQUENCE YIELD/DIVERSITY;LOW 5/3 COVERAGE RATIO |
| TCGA-61-1911-01A-01R-1567-13 | 1ec9cbc3-fd76-4d44-be24-8ff296d3c4c9 | 12/11/2015 | OV | Item flagged DNU | QC Warning- Expression quality metrics (e.g. 3-prime bias, high duplicate rate, genomic contamination, or low alignment rate) are well below average for this file, which should be used with caution, if at all, for expression analysis. However, other analyses, e.g. mutation and structural variant calling, may still give reliable result. |
| TCGA-61-1916-01A-01D-0803-01 | 0dc4136c-c8d3-43b3-b3c8-04fdba203eeb | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-61-1919-11A-01D-0648-01 | 11900447-9891-4939-8255-fab71b98e335 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-61-1998-10A-01D-0663-01 | 486b4e18-442c-4f31-ac8e-f3681ae8de24 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-61-2008-02A-01D-0803-01 | ad02b1ad-5bd1-4b2c-b5f3-03f0b07eb813 | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |
| TCGA-61-2098-11A-01D-0663-01 | bac30e04-07ed-440c-9be1-0d8b2bde14cd | 09/28/2015 | OV | Item flagged DNU | The aliquot failed Broad pipeline QC and not all files are suitable for use. Consult the SDRF file to determine which files are usable. |