2018-09-13 10:33:18::INFO     Checking for broad-firecloud-gdac/awg_TCGA-UVM ...
2018-09-13 10:35:21::INFO     Initializing analyses run.
2018-09-13 10:35:21::INFO     Adding attributes to Sample Sets
2018-09-13 10:35:21::INFO     Copying method configs from broad-firecloud-gdac/Production to broad-firecloud-gdac/awg_TCGA-UVM
2018-09-13 10:35:39::INFO     Initiating run. Recovery file is at:
	awg_TCGA-UVM.json
If run fails due to FireCloud issues, it can be continued by running:
	fissfc supervise_recover awg_TCGA-UVM.json
2018-09-13 10:35:39::INFO     Initializing FireCloud Supervisor...
2018-09-13 10:35:39::INFO     Saving recovery checkpoints to awg_TCGA-UVM.json
2018-09-13 10:35:39::INFO     Validating supervisor data...
2018-09-13 10:35:41::INFO     Starting workflow mRNA_lincRNA_Clustering_CNMF on TCGA-UVM-TP
2018-09-13 10:35:42::INFO     Starting workflow mRNA_lincRNA_Clustering_Consensus_Plus on TCGA-UVM-TP
2018-09-13 10:35:42::INFO     Starting workflow Methylation__HM27_Preprocess on TCGA-UVM-TP
2018-09-13 10:35:43::INFO     Starting workflow Correlate_Clinical_vs_mRNA on TCGA-UVM-TP
2018-09-13 10:35:43::INFO     Starting workflow miR_Mature_Preprocess on TCGA-UVM-TP
2018-09-13 10:35:43::INFO     Starting workflow mRNA_protein_coding_Clustering_Consensus_Plus on TCGA-UVM-TP
2018-09-13 10:35:44::INFO     Starting workflow Mutation_MutSig2CV on TCGA-UVM-TP
2018-09-13 10:35:44::INFO     Starting workflow mRNA_protein_coding_Clustering_CNMF on TCGA-UVM-TP
2018-09-13 10:35:45::INFO     Starting workflow Methylation__HM450_Preprocess on TCGA-UVM-TP
2018-09-13 10:35:45::INFO     Starting workflow CopyNumber_Gistic2 on TCGA-UVM-TP
2018-09-13 10:35:46::INFO     26 Waiting, 10 Running, 0 Completed
2018-09-13 10:36:16::INFO     26 Waiting, 10 Running, 0 Completed
2018-09-13 10:36:47::INFO     Workflow Methylation__HM27_Preprocess completed for TCGA-UVM-TP
2018-09-13 10:36:47::INFO     25 Waiting, 9 Running, 2 Completed
2018-09-13 10:37:17::INFO     Workflow miR_Mature_Preprocess completed for TCGA-UVM-TP
2018-09-13 10:37:17::INFO     Starting workflow miR_Find_Direct_Targets on TCGA-UVM-TP
2018-09-13 10:37:19::INFO     Starting workflow miR_Mature_Clustering_CNMF on TCGA-UVM-TP
2018-09-13 10:37:19::INFO     Starting workflow miR_Mature_Clustering_Consensus_Plus on TCGA-UVM-TP
2018-09-13 10:37:20::INFO     21 Waiting, 11 Running, 4 Completed
2018-09-13 10:37:50::INFO     Workflow Correlate_Clinical_vs_mRNA completed for TCGA-UVM-TP
2018-09-13 10:37:50::INFO     21 Waiting, 10 Running, 5 Completed
2018-09-13 10:38:21::INFO     Workflow Methylation__HM450_Preprocess completed for TCGA-UVM-TP
2018-09-13 10:38:21::INFO     21 Waiting, 9 Running, 6 Completed
2018-09-13 10:38:51::INFO     Starting workflow Methylation__HM450_Clustering_CNMF on TCGA-UVM-TP
2018-09-13 10:38:52::INFO     Workflow mRNA_protein_coding_Clustering_Consensus_Plus completed for TCGA-UVM-TP
2018-09-13 10:38:52::INFO     Starting workflow Methylation__HM450_Clustering_Consensus_Plus on TCGA-UVM-TP
2018-09-13 10:38:52::INFO     19 Waiting, 10 Running, 7 Completed
2018-09-13 10:39:23::INFO     19 Waiting, 10 Running, 7 Completed
2018-09-13 10:39:53::INFO     19 Waiting, 10 Running, 7 Completed
2018-09-13 10:40:24::INFO     19 Waiting, 10 Running, 7 Completed
2018-09-13 10:40:54::INFO     19 Waiting, 10 Running, 7 Completed
2018-09-13 10:41:24::INFO     19 Waiting, 10 Running, 7 Completed
2018-09-13 10:41:55::INFO     19 Waiting, 10 Running, 7 Completed
2018-09-13 10:42:25::INFO     Workflow Methylation__HM450_Clustering_CNMF completed for TCGA-UVM-TP
2018-09-13 10:42:25::INFO     Workflow mRNA_protein_coding_Clustering_CNMF completed for TCGA-UVM-TP
2018-09-13 10:42:25::INFO     Workflow CopyNumber_Gistic2 completed for TCGA-UVM-TP
2018-09-13 10:42:25::INFO     19 Waiting, 7 Running, 10 Completed
2018-09-13 10:42:55::INFO     Workflow mRNA_lincRNA_Clustering_Consensus_Plus completed for TCGA-UVM-TP
2018-09-13 10:42:56::INFO     Workflow miR_Find_Direct_Targets completed for TCGA-UVM-TP
2018-09-13 10:42:56::INFO     Workflow Methylation__HM450_Clustering_Consensus_Plus completed for TCGA-UVM-TP
2018-09-13 10:42:56::INFO     15 Waiting, 4 Running, 17 Completed
2018-09-13 10:43:26::INFO     14 Waiting, 4 Running, 18 Completed
2018-09-13 10:43:56::INFO     14 Waiting, 4 Running, 18 Completed
2018-09-13 10:44:27::INFO     14 Waiting, 4 Running, 18 Completed
2018-09-13 10:44:57::INFO     14 Waiting, 4 Running, 18 Completed
2018-09-13 10:45:28::INFO     14 Waiting, 4 Running, 18 Completed
2018-09-13 10:45:58::INFO     14 Waiting, 4 Running, 18 Completed
2018-09-13 10:46:28::INFO     14 Waiting, 4 Running, 18 Completed
2018-09-13 10:46:59::INFO     14 Waiting, 4 Running, 18 Completed
2018-09-13 10:47:29::INFO     14 Waiting, 4 Running, 18 Completed
2018-09-13 10:48:00::INFO     14 Waiting, 4 Running, 18 Completed
2018-09-13 10:48:30::INFO     14 Waiting, 4 Running, 18 Completed
2018-09-13 10:49:01::INFO     14 Waiting, 4 Running, 18 Completed
2018-09-13 10:49:31::INFO     14 Waiting, 4 Running, 18 Completed
2018-09-13 10:50:02::INFO     14 Waiting, 4 Running, 18 Completed
2018-09-13 10:50:32::INFO     14 Waiting, 4 Running, 18 Completed
2018-09-13 10:51:03::INFO     14 Waiting, 4 Running, 18 Completed
2018-09-13 10:51:33::INFO     14 Waiting, 4 Running, 18 Completed
2018-09-13 10:52:03::INFO     14 Waiting, 4 Running, 18 Completed
2018-09-13 10:52:34::INFO     14 Waiting, 4 Running, 18 Completed
2018-09-13 10:53:04::INFO     14 Waiting, 4 Running, 18 Completed
2018-09-13 10:53:35::INFO     14 Waiting, 4 Running, 18 Completed
2018-09-13 10:54:05::INFO     14 Waiting, 4 Running, 18 Completed
2018-09-13 10:54:35::INFO     Workflow Mutation_MutSig2CV completed for TCGA-UVM-TP
2018-09-13 10:54:36::INFO     Starting workflow Mutation_Assessor on TCGA-UVM-TP
2018-09-13 10:54:36::INFO     Starting workflow Correlate_Clinical_vs_MutationRate on TCGA-UVM-TP
2018-09-13 10:54:37::INFO     Starting workflow Correlate_Clinical_vs_Mutation on TCGA-UVM-TP
2018-09-13 10:54:38::INFO     11 Waiting, 6 Running, 19 Completed
2018-09-13 10:55:08::INFO     Starting workflow Mutation_Signature_Analyzer on TCGA-UVM-TP
2018-09-13 10:55:08::INFO     Starting workflow Mutation_APOBEC on TCGA-UVM-TP
2018-09-13 10:55:09::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 10:55:40::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 10:56:10::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 10:56:40::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 10:57:11::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 10:57:41::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 10:58:12::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 10:58:42::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 10:59:12::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 10:59:43::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:00:13::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:00:44::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:01:14::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:01:45::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:02:15::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:02:46::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:03:16::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:03:46::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:04:17::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:04:53::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:05:23::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:05:54::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:06:24::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:06:55::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:07:26::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:07:56::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:08:26::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:08:57::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:09:27::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:09:58::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:10:29::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:10:59::INFO     9 Waiting, 8 Running, 19 Completed
2018-09-13 11:11:29::INFO     Workflow mRNA_lincRNA_Clustering_CNMF completed for TCGA-UVM-TP
2018-09-13 11:11:29::INFO     Workflow miR_Mature_Clustering_CNMF completed for TCGA-UVM-TP
2018-09-13 11:11:30::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:12:00::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:12:31::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:13:01::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:13:32::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:14:02::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:14:32::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:15:03::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:15:33::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:16:04::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:16:34::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:17:05::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:17:35::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:18:06::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:18:36::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:19:07::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:19:37::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:20:08::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:20:38::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:21:09::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:21:39::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:22:09::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:22:40::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:23:11::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:23:41::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:24:11::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:24:42::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:25:12::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:25:43::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:26:14::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:26:44::INFO     9 Waiting, 6 Running, 21 Completed
2018-09-13 11:27:15::INFO     Workflow Mutation_Assessor completed for TCGA-UVM-TP
2018-09-13 11:27:15::INFO     9 Waiting, 5 Running, 22 Completed
2018-09-13 11:27:45::INFO     Workflow Mutation_Signature_Analyzer completed for TCGA-UVM-TP
2018-09-13 11:27:46::INFO     Workflow miR_Mature_Clustering_Consensus_Plus completed for TCGA-UVM-TP
2018-09-13 11:27:46::INFO     Workflow Correlate_Clinical_vs_MutationRate completed for TCGA-UVM-TP
2018-09-13 11:27:46::INFO     9 Waiting, 2 Running, 25 Completed
2018-09-13 11:28:16::INFO     Workflow Mutation_APOBEC completed for TCGA-UVM-TP
2018-09-13 11:28:17::INFO     Starting workflow Correlate_Clinical_vs_Mutation_APOBEC_Categorical on TCGA-UVM-TP
2018-09-13 11:28:17::INFO     Starting workflow Aggregate_Molecular_Subtype_Clusters on TCGA-UVM-TP
2018-09-13 11:28:18::INFO     Workflow Correlate_Clinical_vs_Mutation completed for TCGA-UVM-TP
2018-09-13 11:28:18::INFO     7 Waiting, 2 Running, 27 Completed
2018-09-13 11:28:48::INFO     Starting workflow Correlate_Clinical_vs_Mutation_APOBEC_Continuous on TCGA-UVM-TP
2018-09-13 11:28:49::INFO     6 Waiting, 3 Running, 27 Completed
2018-09-13 11:29:20::INFO     6 Waiting, 3 Running, 27 Completed
2018-09-13 11:29:50::INFO     6 Waiting, 3 Running, 27 Completed
2018-09-13 11:30:20::INFO     Workflow Correlate_Clinical_vs_Mutation_APOBEC_Continuous completed for TCGA-UVM-TP
2018-09-13 11:30:21::INFO     6 Waiting, 2 Running, 28 Completed
2018-09-13 11:30:51::INFO     Workflow Correlate_Clinical_vs_Mutation_APOBEC_Categorical completed for TCGA-UVM-TP
2018-09-13 11:30:51::INFO     Workflow Aggregate_Molecular_Subtype_Clusters completed for TCGA-UVM-TP
2018-09-13 11:30:51::INFO     Starting workflow Correlate_molecularSubtype_vs_Mutation on TCGA-UVM-TP
2018-09-13 11:30:52::INFO     4 Waiting, 1 Running, 31 Completed
2018-09-13 11:31:22::INFO     Starting workflow Correlate_Clinical_vs_Molecular_Subtypes on TCGA-UVM-TP
2018-09-13 11:31:23::INFO     Starting workflow Correlate_molecularSubtype_vs_CopyNumber_Focal on TCGA-UVM-TP
2018-09-13 11:31:23::INFO     Starting workflow Pathway_GSEA_mRNA on TCGA-UVM-TP
2018-09-13 11:31:24::INFO     Starting workflow Aggregate_Analysis_Features on TCGA-UVM-TP
2018-09-13 11:31:25::INFO     0 Waiting, 5 Running, 31 Completed
2018-09-13 11:31:55::INFO     0 Waiting, 5 Running, 31 Completed
2018-09-13 11:32:26::INFO     Workflow Correlate_molecularSubtype_vs_CopyNumber_Focal completed for TCGA-UVM-TP
2018-09-13 11:32:26::INFO     0 Waiting, 4 Running, 32 Completed
2018-09-13 11:32:56::INFO     0 Waiting, 4 Running, 32 Completed
2018-09-13 11:33:27::INFO     Workflow Correlate_molecularSubtype_vs_Mutation completed for TCGA-UVM-TP
2018-09-13 11:33:27::INFO     0 Waiting, 3 Running, 33 Completed
2018-09-13 11:33:57::INFO     Workflow Correlate_Clinical_vs_Molecular_Subtypes completed for TCGA-UVM-TP
2018-09-13 11:33:57::INFO     Workflow Pathway_GSEA_mRNA completed for TCGA-UVM-TP
2018-09-13 11:33:57::INFO     0 Waiting, 1 Running, 35 Completed
2018-09-13 11:34:28::INFO     0 Waiting, 1 Running, 35 Completed
2018-09-13 11:34:58::INFO     0 Waiting, 1 Running, 35 Completed
2018-09-13 11:35:29::INFO     0 Waiting, 1 Running, 35 Completed
2018-09-13 11:35:59::INFO     0 Waiting, 1 Running, 35 Completed
2018-09-13 11:36:30::INFO     Workflow Aggregate_Analysis_Features completed for TCGA-UVM-TP
2018-09-13 11:36:30::INFO     0 Waiting, 0 Running, 36 Completed
2018-09-13 11:36:30::INFO     DONE.
2018-09-13 11:36:30::INFO     Analyses complete!