Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-RZ-AB0B-01A-11D-A39V-01	TCGA-V3-A9ZX-01A-11D-A39V-01	TCGA-V3-A9ZY-01A-11D-A39V-01	TCGA-V4-A9E5-01A-11D-A39V-01	TCGA-V4-A9E7-01A-11D-A39V-01	TCGA-V4-A9E8-01A-11D-A39V-01	TCGA-V4-A9E9-01A-11D-A39V-01	TCGA-V4-A9EA-01A-11D-A39V-01	TCGA-V4-A9EC-01A-11D-A39V-01	TCGA-V4-A9ED-01A-11D-A39V-01	TCGA-V4-A9EE-01A-11D-A39V-01	TCGA-V4-A9EF-01A-21D-A39V-01	TCGA-V4-A9EH-01A-11D-A39V-01	TCGA-V4-A9EI-01A-11D-A39V-01	TCGA-V4-A9EJ-01A-11D-A39V-01	TCGA-V4-A9EK-01A-11D-A39V-01	TCGA-V4-A9EL-01A-11D-A39V-01	TCGA-V4-A9EM-01A-11D-A39V-01	TCGA-V4-A9EO-01A-12D-A39V-01	TCGA-V4-A9EQ-01A-11D-A39V-01	TCGA-V4-A9ES-01A-11D-A39V-01	TCGA-V4-A9ET-01A-11D-A39V-01	TCGA-V4-A9EU-01A-11D-A39V-01	TCGA-V4-A9EV-01A-11D-A39V-01	TCGA-V4-A9EW-01A-11D-A39V-01	TCGA-V4-A9EX-01A-11D-A39V-01	TCGA-V4-A9EY-01A-11D-A39V-01	TCGA-V4-A9EZ-01A-11D-A39V-01	TCGA-V4-A9F0-01A-11D-A39V-01	TCGA-V4-A9F1-01A-11D-A39V-01	TCGA-V4-A9F2-01A-11D-A39V-01	TCGA-V4-A9F3-01A-11D-A39V-01	TCGA-V4-A9F4-01A-11D-A39V-01	TCGA-V4-A9F5-01A-11D-A39V-01	TCGA-V4-A9F7-01A-11D-A39V-01	TCGA-V4-A9F8-01A-11D-A39V-01	TCGA-VD-A8K7-01B-11D-A39V-01	TCGA-VD-A8K8-01A-11D-A39V-01	TCGA-VD-A8K9-01A-11D-A39V-01	TCGA-VD-A8KA-01B-11D-A39V-01	TCGA-VD-A8KB-01A-11D-A39V-01	TCGA-VD-A8KD-01A-11D-A39V-01	TCGA-VD-A8KE-01A-11D-A39V-01	TCGA-VD-A8KF-01A-11D-A39V-01	TCGA-VD-A8KG-01A-11D-A39V-01	TCGA-VD-A8KH-01A-11D-A39V-01	TCGA-VD-A8KI-01A-11D-A39V-01	TCGA-VD-A8KJ-01A-11D-A39V-01	TCGA-VD-A8KK-01A-11D-A39V-01	TCGA-VD-A8KL-01A-11D-A39V-01	TCGA-VD-A8KM-01A-11D-A39V-01	TCGA-VD-A8KN-01A-11D-A39V-01	TCGA-VD-A8KO-01A-11D-A39V-01	TCGA-VD-AA8M-01A-11D-A39V-01	TCGA-VD-AA8N-01A-11D-A39V-01	TCGA-VD-AA8O-01A-11D-A39V-01	TCGA-VD-AA8P-01A-11D-A39V-01	TCGA-VD-AA8Q-01A-11D-A39V-01	TCGA-VD-AA8R-01A-11D-A39V-01	TCGA-VD-AA8S-01B-11D-A39V-01	TCGA-VD-AA8T-01A-11D-A39V-01	TCGA-WC-A87T-01A-11D-A39V-01	TCGA-WC-A87U-01A-11D-A39V-01	TCGA-WC-A87W-01A-11D-A39V-01	TCGA-WC-A87Y-01A-11D-A39V-01	TCGA-WC-A880-01A-11D-A39V-01	TCGA-WC-A881-01A-12D-A39V-01	TCGA-WC-A882-01A-11D-A39V-01	TCGA-WC-A883-01A-12D-A39V-01	TCGA-WC-A884-01A-11D-A39V-01	TCGA-WC-A885-01A-11D-A39V-01	TCGA-WC-A888-01A-11D-A39V-01	TCGA-WC-A88A-01A-11D-A39V-01	TCGA-WC-AA9A-01A-11D-A39V-01	TCGA-WC-AA9E-01A-11D-A39V-01	TCGA-YZ-A980-01A-11D-A39V-01	TCGA-YZ-A982-01A-11D-A39V-01	TCGA-YZ-A983-01A-11D-A39V-01	TCGA-YZ-A984-01A-11D-A39V-01	TCGA-YZ-A985-01A-11D-A39V-01	
Amplification Peak 1	6p24.3 	chr6:1-18226591(probes 579044:591300)            	chr6:9449628-9975280(probes 585282:585661)        	chr6:1-18226734(probes 579044:591302)          	0.0002226	  0.0002226		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	2	2	0	1	2	2	1	0	1	0	0	1	2	2	0	2	1	0	0	2	0	0	2	1	1	1	0	0	1	1	2	0	2	0	2	0	2	2	2	0	2	0	2	0	1	2	0	1	1	1	2	0	0	0	0	0	0	2	0	1	2	2	0	2	2	1	0	1	2	0	2	0	2	0	2	2	0	0	
Amplification Peak 2	8q11.22	chr8:43078230-69295680(probes 785129:798166)    	chr8:51504678-51524167(probes 787574:787590)    	chr8:43080576-69296016(probes 785130:798168)  	1.2335e-08	 0.00073354		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	2	0	2	2	1	0	0	0	1	2	2	0	2	0	1	2	2	2	2	0	0	2	2	1	2	0	0	1	2	1	2	1	2	0	2	0	2	0	1	0	2	0	2	0	0	2	2	0	2	1	2	0	0	1	1	2	0	0	1	2	0	0	0	2	0	0	0	2	0	0	2	2	2	1	1	1	0	1	0	
Amplification Peak 3	8q24.22	chr8:113697713-145138636(probes 823273:842665)	chr8:132979405-132999446(probes 836205:836221)	chr8:70042600-145138636(probes 798689:842665)	6.8573e-12	 7.8824e-12		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	2	0	2	2	1	2	2	0	1	2	2	0	2	2	1	2	2	2	2	0	2	2	2	1	2	0	2	2	2	1	2	2	2	0	2	0	2	2	2	2	2	0	2	2	1	2	2	2	2	2	2	0	0	2	1	2	0	0	1	2	0	0	0	2	0	2	1	2	0	2	2	2	2	1	1	1	0	1	0	
Deletion Peak  1	1p36.12	chr1:18105008-27386427(probes 8197:13202)         	chr1:22705402-22926463(probes 11018:11197)          	chr1:1-68236720(probes 1:37833)                      	0.0016441	 0.0016441		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	1	1	1	0	0	0	1	0	0	1	1	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	1	0	0	1	1	1	0	0	0	0	1	1	0	1	0	0	0	
Deletion Peak  2	1p12   	chr1:116766064-119608325(probes 66891:68597)    	chr1:119367867-119516297(probes 68424:68558)      	chr1:119367845-119516876(probes 68423:68559)      	0.039767	  0.039767		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	1	0	0	0	0	1	0	1	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	1	1	0	1	0	0	0	
Deletion Peak  3	2q37.2 	chr2:225006957-242193529(probes 254656:264527)  	chr2:235493099-235857687(probes 260922:261151)    	chr2:230795331-241289317(probes 258133:264386)    	0.01221	  0.012384		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  4	3p25.2 	chr3:12767722-12841777(probes 271000:271043)      	chr3:12785434-12841777(probes 271011:271043)        	chr3:12814906-12819502(probes 271028:271029)        	0.056191	  0.054482		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	1	1	0	0	0	1	1	1	0	1	0	0	1	0	1	1	1	0	1	1	0	1	0	0	1	1	0	1	0	1	0	1	0	1	0	1	0	1	0	1	0	0	1	0	1	1	1	1	0	0	1	1	1	0	0	0	1	0	0	0	1	0	0	1	1	0	0	1	1	1	0	1	0	0	1	1	
Deletion Peak  5	3p25.1 	chr3:13503739-13651118(probes 271481:271569)      	chr3:13615577-13619643(probes 271548:271549)        	chr3:13615888-13622927(probes 271549:271550)        	0.0035484	 0.0035484		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	1	1	0	0	0	1	1	1	0	1	0	0	1	0	1	1	1	0	1	1	0	1	0	0	1	1	0	1	0	1	0	1	0	1	0	1	0	1	0	1	0	0	1	0	1	1	1	1	0	0	1	1	1	0	0	0	1	0	0	0	1	0	0	1	1	0	0	1	1	1	0	1	0	0	1	1	
Deletion Peak  6	3p22.2 	chr3:38273260-38347639(probes 286397:286438)      	chr3:38305044-38323949(probes 286408:286425)        	chr3:38308604-38314425(probes 286413:286420)        	0.045261	  0.044545		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	1	1	0	0	0	1	1	1	0	1	0	0	1	0	1	1	1	0	1	1	0	1	0	0	1	1	0	1	0	1	0	1	0	1	0	1	0	1	0	1	0	0	1	0	1	1	1	1	0	0	1	1	1	0	0	0	1	0	0	0	1	0	0	1	1	0	0	1	1	1	0	1	0	0	1	1	
Deletion Peak  7	3p14.2 	chr3:58633296-67015239(probes 297743:303076)      	chr3:59719410-61252543(probes 298461:298664)        	chr3:61130932-61134249(probes 298563:298564)        	0.073099	   0.07193		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	1	1	0	0	0	1	1	1	0	1	0	0	1	0	1	1	1	0	1	1	0	1	0	0	1	1	0	1	0	1	0	1	0	1	0	1	0	1	0	1	0	1	1	0	1	1	1	1	0	0	1	1	1	0	0	0	1	0	0	0	1	0	0	1	1	0	0	1	1	1	0	1	0	0	1	1	
Deletion Peak  8	3q24   	chr3:143210556-143975530(probes 344266:344624)  	chr3:143210556-143851196(probes 344266:344553)    	chr3:143653921-143657134(probes 344410:344411)    	0.016688	  0.017321		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	1	1	0	0	0	1	1	1	0	1	0	0	1	0	1	1	1	0	1	1	1	1	0	0	1	1	0	1	0	1	0	1	0	1	0	1	0	1	0	1	0	1	1	0	1	1	1	1	0	0	1	1	1	0	0	0	1	0	0	0	1	0	0	1	1	0	0	1	1	1	0	1	0	0	1	1	
Deletion Peak  9	3q29   	chr3:194310859-194355276(probes 371541:371562)  	chr3:194339713-194355209(probes 371546:371561)    	chr3:194343650-194345743(probes 371554:371555)    	0.010826	  0.010826		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	1	1	0	0	0	1	1	1	0	1	0	0	1	0	1	1	1	0	1	1	1	1	0	0	1	1	0	1	0	1	0	1	0	1	0	1	0	1	0	1	0	1	1	0	1	1	1	1	0	0	1	1	1	0	0	0	1	0	0	0	1	0	0	1	1	0	0	1	1	1	0	1	0	0	1	1	
Deletion Peak 10	3q29   	chr3:194576042-194646185(probes 371693:371721)  	chr3:194576042-194646185(probes 371693:371721)    	chr3:194611147-194614318(probes 371708:371709)    	0.066004	  0.066004		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	0	1	1	0	0	0	1	1	1	0	1	0	0	1	0	1	1	1	0	1	1	1	1	0	0	1	1	0	1	0	1	0	1	0	1	0	1	0	1	0	1	0	1	1	0	1	1	1	1	0	0	1	1	1	0	0	0	1	0	0	0	1	0	0	1	1	0	0	1	1	1	0	1	0	0	1	1	
Deletion Peak 11	5q23.1 	chr5:114562212-158412206(probes 538550:565258)  	chr5:119355087-119395371(probes 541416:541437)    	chr5:119377893-119381646(probes 541427:541428)    	0.15322	   0.15168		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	
Deletion Peak 12	6q25.3 	chr6:155944963-158007554(probes 669220:670409)  	chr6:157513831-157535246(probes 670113:670114)    	chr6:142177703-158456899(probes 659821:670724)    	0.0016441	 0.0016441		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	1	1	1	0	0	0	1	0	0	1	0	0	1	0	0	0	0	1	1	0	1	1	0	1	1	0	0	1	1	1	0	0	0	0	1	0	1	0	0	0	1	0	1	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	
Deletion Peak 13	8p11.22	chr8:38455400-38611162(probes 782444:782516)      	chr8:38504083-38530493(probes 782458:782474)        	chr8:38518885-38521731(probes 782467:782468)        	0.037764	  0.037764		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	1	0	1	0	1	0	0	0	1	0	0	0	0	0	1	0	0	1	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	
Deletion Peak 14	11q24.3	chr11:17383801-133813742(probes 1004621:1072243)	chr11:128521101-129619274(probes 1068772:1069526)	chr11:115194719-132579948(probes 1059004:1071644)	0.01013	  0.010227		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	
Deletion Peak 15	16q22.1	chr16:31711094-90338345(probes 1314908:1342450)  	chr16:68730592-68838709(probes 1329243:1329313)    	chr16:68790172-68796975(probes 1329279:1329280)    	0.046297	  0.051696		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	1	1	1	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	1	1	0	0	0	0	0	
Deletion Peak 16	16q23.3	chr16:82656211-83509230(probes 1338634:1339381)  	chr16:82625124-83796894(probes 1338613:1339764)    	chr16:83357684-83360861(probes 1339189:1339190)    	0.09096	   0.10675		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	1	0	1	1	1	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	1	1	0	0	0	0	0	
Deletion Peak 17	17q12  	chr17:28944822-56486234(probes 1353244:1366279)  	chr17:38864728-38925453(probes 1357623:1357653)    	chr17:38886235-38915938(probes 1357628:1357648)    	0.20414	   0.20414		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 18	18q22.2	chr18:67514632-80373285(probes 1417594:1423607)  	chr18:70379364-70463014(probes 1419222:1419223)    	chr18:70377783-70465728(probes 1419218:1419225)    	0.10123	   0.10675		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak 1 - CN values	6p24.3 	chr6:1-18226591(probes 579044:591300)            	chr6:9449628-9975280(probes 585282:585661)        	chr6:1-18226734(probes 579044:591302)          	0.0002226	  0.0002226		Actual Copy Change Given	0.0044411	0.62897	1.0015	1.8496	0.049871	0.76044	1.9837	1.0288	0.46144	0.013537	0.14565	0.010006	-0.0037435	0.81376	1.7563	1.5789	0.01419	1.0053	0.60339	-0.0034866	0.013331	2.0253	0.036088	0.0029895	0.99907	0.7057	0.74851	0.77522	0.01433	0.040892	0.83255	0.61806	1.6	0.019923	0.97172	0.031019	1.7272	0.014051	2.3484	1.8203	1.5771	0.013492	0.96625	0.05111	3.4434	0.008892	0.89728	1.7071	0.028763	0.6821	0.47024	0.14399	1.0157	0.05694	0.0114	0.020903	0.0020805	-0.0016629	0.002576	3.6569	0.010304	0.89688	1.0744	0.95795	0.0067253	0.92229	0.94507	0.10016	0.0072217	0.88406	1.53	0.014609	0.91258	0.011121	2.4426	0.0058309	1.2407	0.97488	-0.021373	0.0040243	
Amplification Peak 2 - CN values	8q11.22	chr8:43078230-69295680(probes 785129:798166)    	chr8:51504678-51524167(probes 787574:787590)    	chr8:43080576-69296016(probes 785130:798168)  	1.2335e-08	 0.00073354		Actual Copy Change Given	2.9273	2.8802	-0.015604	0.92856	2.8194	0.75528	0.0051359	-0.0051227	-0.0024092	0.17287	2.2094	1.5101	0.0097276	3.6569	-0.0011087	0.80305	3.2725	1.9277	1.1965	1.229	-0.0085858	0.024127	3.0905	2.1839	0.11565	3.1018	-0.0013302	-0.0085766	0.87618	2.5555	0.82745	1.6356	0.48337	2.1736	-0.0029586	1.1553	0.00055459	2.3361	-0.0073339	0.38436	-0.0056757	1.0686	-0.0023779	1.0339	-0.012576	-0.014228	2.529	1.611	0.024268	1.3303	0.47151	1.8675	-0.0027068	-0.0023553	0.81806	0.59458	0.96042	-0.0066432	0.0013271	0.89628	0.93694	0	-0.00051275	0.021323	1.602	0.0022193	-0.0078863	-0.014503	3.041	-0.0003245	-0.0027707	1.3233	1.7438	0.97676	0.71076	0.47976	0.62406	0.00018264	0.63207	0.013772	
Amplification Peak 3 - CN values	8q24.22	chr8:113697713-145138636(probes 823273:842665)	chr8:132979405-132999446(probes 836205:836221)	chr8:70042600-145138636(probes 798689:842665)	6.8573e-12	 7.8824e-12		Actual Copy Change Given	2.845	2.7611	0.0026357	0.95591	2.6649	0.73322	1.0291	3.018	-0.0024092	0.16733	2.2094	1.5008	-0.044822	3.6569	0.92128	0.80305	3.1323	1.9277	1.1965	1.8704	0.019773	1.8573	3.0315	2.1839	0.29803	2.9812	-0.0013302	1.0695	0.97255	2.3217	0.82745	1.5945	1.2418	2.1736	-0.0029586	1.2121	0.00055459	2.3241	2.3285	1.7966	1.9269	1.0697	-0.0023779	1.0299	1.7329	0.88026	2.4165	1.3938	1.004	1.3419	1.3586	1.8675	-0.0027068	-0.0023553	1.5978	0.59458	1.0285	-0.0066432	0.0013271	0.89106	0.99865	0	0.0015255	0.021323	1.5806	0.00055459	1.769	0.67048	3.0487	-0.0003245	1.0262	1.313	1.7438	1.0411	0.67141	0.47976	0.64194	0.00018264	0.63207	0.013772	
Deletion Peak  1 - CN values	1p36.12	chr1:18105008-27386427(probes 8197:13202)         	chr1:22705402-22926463(probes 11018:11197)          	chr1:1-68236720(probes 1:37833)                      	0.0016441	 0.0016441		Actual Copy Change Given	-0.44975	-0.011749	-0.0034627	0.073402	-1.0543	-0.14939	-0.039181	0.0090312	-0.0018014	-0.03286	-0.699	0	-0.080296	-0.00041585	-0.035312	0.047836	-0.015879	0.055515	-0.65147	-0.8407	-1.0232	-0.083864	0.034536	-0.055155	-0.34538	-0.0047079	0.00078848	-0.97381	-0.9371	-0.065428	-0.0036011	-0.024114	-0.025346	-1.1723	-0.0033243	-0.97224	-0.019863	-0.019314	-0.0020784	-1.0317	-0.063435	-0.79001	-0.0023779	-0.026761	0	-0.95992	-0.071472	-0.0011087	-0.031359	-0.0051727	-0.017926	-0.013815	-0.0015243	0.034113	-0.029038	-0.61853	-0.98604	0.0076392	-0.0013424	-0.00069303	-1.0681	-0.0024938	-0.0018014	-1.0535	0.0015255	-0.0023553	-0.92189	-0.66356	-0.89266	-0.0083005	-0.017803	-0.020138	-0.005814	-1.0439	-0.93253	-0.0096118	-0.65538	-0.018721	-0.045635	-0.08094	
Deletion Peak  2 - CN values	1p12   	chr1:116766064-119608325(probes 66891:68597)    	chr1:119367867-119516297(probes 68424:68558)      	chr1:119367845-119516876(probes 68423:68559)      	0.039767	  0.039767		Actual Copy Change Given	-0.4627	-0.0044164	-0.0034627	0.0030522	0.0094954	-0.063032	-0.021784	0.0019418	-0.0018014	0.00597	-0.44726	0	-0.022528	-0.00041585	0.0010723	-0.0019399	-0.0013858	-0.0059522	-0.64753	-0.81204	-1.127	-0.031086	0.03031	-0.0018638	-0.065142	-0.91394	0.00078848	-1.0221	-0.056712	0.013074	-0.0036011	0.00027728	-0.013815	-1.069	-0.0020784	-0.97224	-0.00055444	0.0011093	-0.0037345	-0.8351	-0.025008	0.0090312	-0.0023779	0.0042543	0	0.037359	-0.028765	-0.014503	0.0043021	-0.0051727	-0.0015952	0.0049969	-0.0015243	0.004107	-6.5944e-05	-0.57743	-0.98604	-0.0017505	-0.0013424	-0.00026903	0.039356	-0.0024938	-0.0018014	-1.0018	0.0015255	-0.0023553	0.016985	-0.66356	-0.90411	-0.00013862	0.00083195	0	-0.005814	-1.0397	-0.92704	-0.0096118	-0.65538	-0.00064904	-0.011674	-0.042517	
Deletion Peak  3 - CN values	2q37.2 	chr2:225006957-242193529(probes 254656:264527)  	chr2:235493099-235857687(probes 260922:261151)    	chr2:230795331-241289317(probes 258133:264386)    	0.01221	  0.012384		Actual Copy Change Given	-0.0031859	0.020343	0.020623	0.031436	-0.053567	0.20022	-0.010094	0.015028	-0.0047079	-0.014503	-0.055071	0.0095883	-0.050089	-0.029721	0.0029133	-0.97856	-0.0056757	0.020483	-0.043749	-0.0063282	-0.020511	-0.051991	0.0066653	0.0013242	0.012376	-0.013264	0.0030522	0.023286	-0.11587	-0.026304	0.015028	0.0080567	-0.020275	-0.015956	0.0016642	-0.026988	0.004719	0	-0.98759	0.012376	-0.046513	-0.0011087	0.01082	-0.016476	0.00597	-0.00041585	-0.044009	0.48113	-0.015329	0.4966	0.0025647	-0.01409	0	0	0.0044411	-0.042924	-0.033132	-0.0008316	-0.0073076	0.80597	-0.0027522	-0.92602	-0.0014976	0.045282	-0.0038779	0.001803	0.0072217	0.18852	-0.00027724	0.00063821	-0.014069	0.0036076	-0.007126	0.0038854	-0.070135	0	1.1866	0.0026798	0.55862	-0.030677	
Deletion Peak  4 - CN values	3p25.2 	chr3:12767722-12841777(probes 271000:271043)      	chr3:12785434-12841777(probes 271011:271043)        	chr3:12814906-12819502(probes 271028:271029)        	0.056191	  0.054482		Actual Copy Change Given	-0.90639	-0.78522	-0.011198	-0.041702	-1.0346	-0.53744	-0.01409	0.00013863	0	-0.98738	-0.92152	-0.87542	-0.019945	-0.78707	-0.0087146	0.00041593	-0.82911	-0.0085766	-0.66265	-1.0201	-1.0149	-0.067458	-1.0005	-0.7439	-0.0019399	-0.92689	-0.0012473	-0.0080244	-0.97217	-0.93828	0	-0.6738	0.29247	-1.0942	-0.0023019	-0.97901	-0.00041585	-0.96574	0.0056919	-0.20871	-0.014503	-0.82105	-0.0045921	-1.1159	-0.013299	0.036612	-0.95768	-0.071873	-0.95784	-0.68946	-0.47715	-0.92443	-0.0032033	0.0081959	-0.92711	-0.5717	-0.98927	0.0049969	0.0022984	-0.013264	-1.0169	0.0026357	-0.00047215	0.0068044	-0.70684	-0.0028169	0.0093098	-0.66707	-0.90843	-0.0031859	-0.00069303	-0.76492	-0.48439	-1.0678	0.0029133	-0.46113	-0.0011087	4.4e-05	-0.66522	-1.0387	
Deletion Peak  5 - CN values	3p25.1 	chr3:13503739-13651118(probes 271481:271569)      	chr3:13615577-13619643(probes 271548:271549)        	chr3:13615888-13622927(probes 271549:271550)        	0.0035484	 0.0035484		Actual Copy Change Given	-1.2929	-0.78522	-0.011198	-0.041702	-1.0346	-0.53744	-0.01409	0.00013863	0	-0.98738	-0.92152	-0.87542	-0.019945	-0.78707	-0.0087146	0.00041593	-0.8857	-0.0085766	-0.66265	-1.0201	-1.0149	-0.067458	-0.98278	-0.7439	-0.0019399	-0.92689	-0.0012473	-0.0080244	-0.97217	-0.93828	0	-0.6738	0.29247	-1.0942	-0.0023019	-0.97901	-0.00041585	-0.96574	0.0056919	-0.20871	-0.014503	-1.2872	-0.0045921	-1.2929	-0.013299	0.036612	-0.95768	-0.071873	-0.9254	-0.68946	-0.47715	-0.92443	-0.0032033	0.0081959	-0.92711	-0.5717	-0.98927	0.0049969	0.0022984	-0.013264	-1.0169	0.0026357	-0.00047215	0.0068044	-0.70684	-0.0028169	0.0093098	-0.66707	-0.90843	-0.0031859	-0.00069303	-0.76492	-0.54985	-1.0678	0.0029133	-0.46113	-0.0011087	4.4e-05	-0.66522	-1.0387	
Deletion Peak  6 - CN values	3p22.2 	chr3:38273260-38347639(probes 286397:286438)      	chr3:38305044-38323949(probes 286408:286425)        	chr3:38308604-38314425(probes 286413:286420)        	0.045261	  0.044545		Actual Copy Change Given	-0.88829	-0.78522	-0.011198	-0.041702	-0.98207	-0.47342	-0.012713	0.00013863	0	-0.94693	-0.89326	-0.87542	0.0087528	-0.78707	-0.0087146	0.00041593	-0.80708	-0.0085766	-0.64453	-1.0947	-0.98969	-0.042927	-0.98019	-0.7439	-0.0019399	-1.2929	-0.0012473	0.00041593	-0.92778	-1.2929	0	-0.64283	-0.0011087	-1.059	-0.0023019	-0.97404	-0.00041585	-0.96574	0.0056919	-0.17727	-0.0078863	-0.80393	-0.0045921	-1.0727	0.001803	0.055658	-0.91311	-0.071873	-0.9254	-0.68946	-0.47715	-0.92443	0.0052749	0.0081959	-0.83825	-0.57555	-0.99183	0.0049969	0.0022984	0.0072217	-0.9952	-6.9075e-05	-0.00047215	0.0068044	-0.70684	-0.0028169	0.0073091	-0.66707	-0.90843	-0.0031859	-0.00069303	-0.76492	-0.47564	-1.0298	0.0097276	-0.45971	-0.0011087	4.4e-05	-0.66522	-1.004	
Deletion Peak  7 - CN values	3p14.2 	chr3:58633296-67015239(probes 297743:303076)      	chr3:59719410-61252543(probes 298461:298664)        	chr3:61130932-61134249(probes 298563:298564)        	0.073099	   0.07193		Actual Copy Change Given	-0.89105	-0.78522	-0.012781	-0.042381	-1.0009	-0.44232	-0.012713	0.00013863	0	-0.9701	-0.89563	-0.88624	0.0087528	-0.79695	-0.0087146	0.00041593	-0.80708	-0.022332	-0.67427	-1.0104	-0.98969	0.0029133	-0.98925	-0.7439	-0.0019399	-0.93142	-0.0012473	-0.01037	-0.96452	-0.89427	0	-0.64283	-0.0042742	-1.0559	-0.0023019	-0.97404	-0.00041585	-0.96574	0.0056919	-0.1785	-0.0076101	-0.82334	-0.0045921	-1.0727	0.001803	-0.99353	-0.94174	-0.071873	-0.94306	-0.68946	-0.47715	-0.92443	0.001803	0.0081959	-0.83825	-0.56873	-1.0098	0.0049969	0.0022984	0.0072217	-0.9952	-6.9075e-05	-0.00047215	0.0068044	-0.70612	-0.0028169	0.01447	-0.67177	-0.91778	-0.0031859	-0.00069303	-0.76492	-0.47014	-1.0371	0.033882	-0.45971	-0.0011087	-0.0043873	-0.66522	-1.0256	
Deletion Peak  8 - CN values	3q24   	chr3:143210556-143975530(probes 344266:344624)  	chr3:143210556-143851196(probes 344266:344553)    	chr3:143653921-143657134(probes 344410:344411)    	0.016688	  0.017321		Actual Copy Change Given	-0.89105	-0.78522	-0.012781	-0.071472	-0.97051	-0.41462	0.010006	-0.02562	0	-0.94019	-0.89563	-0.8668	0.0087528	-0.7913	-0.0088526	-0.025072	-0.80708	-0.022332	-0.64782	-1.024	-0.98969	0.019923	-0.98989	-0.7439	-0.31014	-0.90054	-0.0058531	-0.023566	-0.92144	-0.85512	0	-0.64283	0.003191	-1.0637	0.0041632	-0.96803	-0.00041585	-0.95406	-0.00055444	-0.24509	0.024548	-0.79895	-0.0072798	-1.0708	0.001803	-0.98315	-0.89488	-0.080199	-0.91047	-0.68873	-0.47295	-0.92443	0.001803	-0.014916	-0.82741	-0.57279	-0.9809	0.0013949	0.0022984	-0.0045695	-1.0078	-6.9075e-05	0.0063871	0.0068044	-0.70148	-0.00027724	-0.017666	-0.92927	-0.90358	-0.0031859	-0.00069303	-0.76492	-0.49099	-1.0371	0.049824	-0.45971	-0.0011087	0	-0.66522	-1.0129	
Deletion Peak  9 - CN values	3q29   	chr3:194310859-194355276(probes 371541:371562)  	chr3:194339713-194355209(probes 371546:371561)    	chr3:194343650-194345743(probes 371554:371555)    	0.010826	  0.010826		Actual Copy Change Given	-0.89278	-0.78522	-0.012781	-0.030813	-1.0287	-0.77905	0.010006	-0.012162	0	-0.93791	-0.89563	-0.8715	0.0087528	-0.79101	-0.059	-0.025072	-0.80708	-0.022332	-0.64782	-1.0076	-0.99674	-0.041838	-0.97863	-0.7439	-0.31014	-0.93703	-0.0058531	-0.052666	-0.97679	-0.93533	0	-0.68341	0.003191	-1.0501	0.0041632	-0.97495	-0.00041585	-0.95406	-0.00055444	-0.24509	0.28105	-0.79728	-0.0072798	-1.0759	-0.0037395	-0.98019	-0.93223	-0.080199	-0.93917	-0.68873	-0.47295	-0.92443	0.001803	-0.00069303	-0.82741	-0.57279	-1.0003	0.0075	0.0022984	-0.0045695	-0.99438	-6.9075e-05	-0.0038779	0.0068044	-0.70148	-0.00027724	0.033831	-0.83228	-0.90358	-0.0031859	-0.00069303	-0.76492	-0.47194	-1.0371	-0.03681	-0.45971	-0.0011087	0	-0.66522	-1.0578	
Deletion Peak 10 - CN values	3q29   	chr3:194576042-194646185(probes 371693:371721)  	chr3:194576042-194646185(probes 371693:371721)    	chr3:194611147-194614318(probes 371708:371709)    	0.066004	  0.066004		Actual Copy Change Given	-0.89278	-0.78522	-0.012781	-0.030813	-1.0287	-0.49684	0.010006	-0.012162	0	-0.93791	-0.89563	-0.8715	0.0087528	-0.79101	-0.059	-0.025072	-0.80708	-0.022332	-0.64782	-1.0076	-1.0097	-0.041838	-0.97863	-0.7439	-0.31014	-0.93703	-0.0058531	-0.0070576	-0.97679	-0.93533	0	-0.68341	0.003191	-1.0501	0.0041632	-0.97566	-0.00041585	-0.95406	-0.00055444	-0.24509	0.28105	-0.79728	-0.0072798	-1.0639	-0.0037395	-0.98019	-0.93223	-0.080199	-0.93917	-0.68873	-0.47295	-0.92443	0.001803	-0.00069303	-0.82741	-0.57279	-1.0003	0.0075	0.0022984	-0.0045695	-0.99438	-6.9075e-05	-0.0038779	0.0068044	-0.70148	-0.00027724	0.033831	-0.83228	-0.90358	-0.0031859	-0.00069303	-0.76492	-0.47194	-1.0371	-0.03681	-0.45971	-0.0011087	0	-0.66522	-1.009	
Deletion Peak 11 - CN values	5q23.1 	chr5:114562212-158412206(probes 538550:565258)  	chr5:119355087-119395371(probes 541416:541437)    	chr5:119377893-119381646(probes 541427:541428)    	0.15322	   0.15168		Actual Copy Change Given	0	0.058081	-0.011895	-0.083333	0.078486	0.027076	0.0048852	-1.0403	0	0.021603	-0.018603	0.004719	0.028763	0.017824	0.0077783	-0.061689	0.017684	-0.021921	0.62787	0.0051119	0.024679	0.030591	-0.0033243	-0.0016591	-0.082535	0.03031	-0.0029091	-0.014503	0.061222	0.091445	-0.010508	0.12432	0.0038854	0.025812	0	-0.0085766	0.008892	0.015447	-0.005261	-0.0038779	0.030451	0.01215	-0.0040388	0.01498	-0.0023553	-0.022332	0.059651	-0.00041585	0.029184	-0.010696	0.0025647	0.017881	-0.0020784	-0.0015809	0.015866	0.022865	-0.9343	0.00027728	0.0020208	-0.0040162	0.0069621	0.0013868	0.0022193	-0.96452	-0.0016629	0.003191	-0.013892	-0.0019399	-0.00092719	0.004719	0	0.0070826	0.0016642	-0.0045695	0.052952	0.00597	-0.66531	0.0046241	0.64249	0.035242	
Deletion Peak 12 - CN values	6q25.3 	chr6:155944963-158007554(probes 669220:670409)  	chr6:157513831-157535246(probes 670113:670114)    	chr6:142177703-158456899(probes 659821:670724)    	0.0016441	 0.0016441		Actual Copy Change Given	0.0097276	-0.67481	0.99385	0.95919	-0.92403	-0.90616	-1.0541	-0.021235	0.0044411	0.032281	-0.16559	0.010006	0.027778	-0.84579	-0.035559	-0.022469	-0.81326	0.97172	0.62441	0.0065022	0.032694	-1.0934	-0.92748	0.014546	-0.56604	-0.67866	0.04741	-0.75288	-0.81966	0.028481	0.85423	-0.69857	-1.005	-1.0654	0.0026357	0.0094491	0.0029589	0.014051	-1.0123	-0.0045695	-1.0556	0.022024	0.96702	-0.020185	-0.25176	0.0012481	-1.1311	-1.0834	0.0073609	-0.0054493	0.00437	-0.11273	0.0056919	-0.0025938	-0.8605	-0.017941	0.050392	0.00097064	0.0014245	-0.0020784	0.019521	0.0023581	-0.00069303	0.0023581	0.0081959	-0.0024938	-0.98097	0.0081007	0.0033299	-0.0022168	0	0.014609	-0.96413	0.00597	-0.96466	0.0058309	0.0020805	4.319e-05	-0.011335	0.010842	
Deletion Peak 13 - CN values	8p11.22	chr8:38455400-38611162(probes 782444:782516)      	chr8:38504083-38530493(probes 782458:782474)        	chr8:38518885-38521731(probes 782467:782468)        	0.037764	  0.037764		Actual Copy Change Given	0.13969	-0.81499	0.00083195	0.97028	-1.0342	0.69409	0.0051359	-0.0051227	-0.0024092	-0.058866	0.08756	-0.021986	-0.025072	-0.95319	-0.0011087	0.80305	-0.83857	1.9277	-0.075356	0.21896	-0.0085858	-0.012851	-1.0002	-0.068188	0.11565	-0.95609	-0.0013302	0.020903	0.75566	-0.92428	0.82745	-0.57861	0.48337	-0.98583	-0.0029586	0.5713	0.00055459	-0.9016	-0.010658	0.0024969	-0.0056757	0.55307	-0.0023779	-0.89215	-0.012576	-0.014228	-0.96817	-1.0365	-0.027671	1.3303	-0.49199	-0.03286	0.0049969	-0.0023553	-0.86554	0.46007	-0.0091286	-0.0066432	0.0013271	0.89628	0.93694	0	-0.00051275	0.021323	-0.26805	0.0022193	-0.0078863	-0.014503	-0.012749	-0.0003245	-0.0027707	-0.428	-0.9633	0.97676	0.61317	-0.47638	0.62406	0.00018264	0.63207	-0.013677	
Deletion Peak 14 - CN values	11q24.3	chr11:17383801-133813742(probes 1004621:1072243)	chr11:128521101-129619274(probes 1068772:1069526)	chr11:115194719-132579948(probes 1059004:1071644)	0.01013	  0.010227		Actual Copy Change Given	-0.011473	-0.012438	0.00027728	1.0049	-0.0079784	0.28248	-0.034631	-1.0281	-0.0042929	-0.0049844	-0.0020539	-0.0036011	-0.035857	-0.017941	-0.012576	0.0040243	-0.015604	-0.013402	0.56062	-0.013288	-0.0067906	-0.039122	0.0068044	-0.011811	0.020203	-0.0066432	0.0049969	0.035806	-0.016704	-0.0053992	0.82138	-0.024114	-0.32982	0.051387	0.004719	0.54294	-0.0034627	-0.011611	-0.0071958	-0.00013862	-0.20878	-0.01037	0.0021967	-0.00018632	-1.0309	0.0015255	-0.019452	-0.011335	-0.011479	0.38827	-0.0042253	-0.01409	1.0164	0.0036076	-0.0070576	0.0051359	-0.0016629	-0.015181	0.0013271	0	-0.011314	0.0020805	0.0019418	0.0024969	-0.0089906	-0.97317	0.011261	-0.0087146	0.0066653	-0.25842	-0.0093488	-0.0045695	-0.011473	-0.0047079	-0.042652	-0.0066432	0.59366	-0.00051045	-0.68979	0.010146	
Deletion Peak 15 - CN values	16q22.1	chr16:31711094-90338345(probes 1314908:1342450)  	chr16:68730592-68838709(probes 1329243:1329313)    	chr16:68790172-68796975(probes 1329279:1329280)    	0.046297	  0.051696		Actual Copy Change Given	-0.31482	-0.69776	0.017264	-1.0276	-0.91414	-0.12174	-0.025756	-0.051046	-0.0080244	-0.027261	-0.0063424	-0.01409	-0.060211	-0.46812	-0.0047079	0.018523	-0.82594	0.066945	0.55548	-0.20002	-0.017675	-0.076678	-0.92644	-0.091215	-0.18421	-0.049019	0.0024969	-0.90563	-0.023292	-0.087107	-0.0037395	-0.054286	-0.017694	0.010424	-0.0013858	0.031295	-0.0044312	-0.005261	-0.00041585	-0.048748	-0.01409	-0.011205	0.00873	-0.0093141	-0.0030764	0.036512	-0.032996	0.016146	-0.035312	-0.0066931	-0.48402	-0.09446	0.0036076	-0.094724	-0.85623	-0.063166	-0.0041546	0.020063	-0.00033685	0.0011093	-0.012282	-0.0078863	0.0019418	-0.0088526	-0.0026322	0	-0.88619	-0.005261	0.0098669	-0.89436	0	-0.014778	-0.9489	-1.0323	-0.93105	-0.0068072	-0.0059522	0.00059861	-0.028081	-0.023703	
Deletion Peak 16 - CN values	16q23.3	chr16:82656211-83509230(probes 1338634:1339381)  	chr16:82625124-83796894(probes 1338613:1339764)    	chr16:83357684-83360861(probes 1339189:1339190)    	0.09096	   0.10675		Actual Copy Change Given	-0.30839	-0.73029	0.017264	-1.0732	-0.96672	-0.10579	-0.025756	-0.051046	-0.0080244	-0.027261	-0.0063424	-0.01409	-0.060211	-0.57031	-0.036401	0.059366	-0.82594	0.010006	0.55565	-0.20002	-0.017675	-0.09644	-0.92644	-0.091215	-0.28168	-0.049019	0.0024969	-0.98463	-0.04048	-0.029038	-0.0037395	-0.054286	-0.017694	-0.0034194	-0.0013858	0.010006	-0.0044312	-0.005261	-0.00041585	-0.048748	-0.056307	-0.011205	0.0043724	-0.0093141	-0.0030764	0.036512	-0.075878	0.016146	-0.05028	-0.0066931	-0.48402	-0.10355	-0.018478	-0.094724	-0.91364	0.022444	-0.0041546	-0.012114	-0.00033685	0.0011093	0.021342	-0.0078863	0.0019418	-0.0088526	-0.0026322	0	-0.96646	-0.005261	0.043582	-0.82925	-0.039258	-0.014778	-0.99409	-1.0704	-0.97984	-0.0068072	-0.052261	-0.0079805	-0.028081	-0.055229	
Deletion Peak 17 - CN values	17q12  	chr17:28944822-56486234(probes 1353244:1366279)  	chr17:38864728-38925453(probes 1357623:1357653)    	chr17:38886235-38915938(probes 1357628:1357648)    	0.20414	   0.20414		Actual Copy Change Given	0.058367	-0.011076	0.010285	0.065465	-0.022287	0.60593	-0.030131	0.0087528	-0.00013862	-0.035857	0.017893	-0.010784	-0.044957	0.0012481	-0.016429	0.047134	-0.011611	0.068808	0.52852	0.009428	-0.0174	-0.072293	0.053948	0.0078547	-0.020412	-0.0087146	0.0020805	0.088837	-0.028628	-0.065447	-0.014366	-0.019177	-0.013127	0.046984	-0.0084385	0.047978	-0.006505	-0.0022168	0.0013868	0.069812	-0.04726	0.027497	0.0090085	-0.017851	0.0025189	0.042449	-0.059807	0.021884	-0.024661	0.63712	-0.0090612	-0.0073339	-0.0063668	-1.2929	-0.026851	0.51385	-0.0055375	-0.78024	0.0003563	0.87528	0.017702	-0.012713	-0.0026322	-0.0034627	0.00069327	-0.0073339	0.040751	0.010982	0.0416	-0.89718	-0.011522	-0.0026322	-0.0070576	0.05466	-0.043195	-0.006505	0.64194	-0.010602	0.57755	-0.041838	
Deletion Peak 18 - CN values	18q22.2	chr18:67514632-80373285(probes 1417594:1423607)  	chr18:70379364-70463014(probes 1419222:1419223)    	chr18:70377783-70465728(probes 1419218:1419225)    	0.10123	   0.10675		Actual Copy Change Given	0.0073609	0.013632	0.0019418	-0.015329	0.052999	-0.020961	0	-1.0596	0.0015255	0.0097276	0.01673	0.0072217	-0.018902	0.012655	0.00097064	0.0054139	0.015308	-0.0020784	0.57718	-0.0050083	0.0091612	0.043582	0.015028	0.0028507	-0.48838	0.015028	0	0.020903	0.021744	0.043015	-0.017803	0.0041632	0.0034687	0.0034687	-0.00027724	0	0.0076392	0.015866	0.0037465	-0.0018014	-0.0076101	0.0024969	0.0041405	0.016517	-0.0080244	-0.014228	0.016705	0.014051	0.070673	0.0046687	0.00437	0.016705	0.0024969	-0.0018907	0.010703	-0.60284	0.001803	-0.074635	-0.00047545	0.00097064	-0.0019214	0.00013863	-0.00027724	-0.29922	0.0066653	0.0015255	-0.01904	0.0041632	0.00097064	-0.0123	-0.016608	0.006109	0.014051	0.010146	0.030029	0.0054139	-0.014916	0.0028186	-0.0094046	-0.0033243	
