Memory	4
Segmentation File	/cromwell_root/fc-2289d790-de74-4808-9b0a-cefafc34d859/8c831002-810c-4524-bfdd-ace10bdcaed8/aggregate_data_workflow/ed996cd3-9cd8-4590-9a90-cbc8a12b1df7/call-aggregate_data/TCGA-UVM-TP.CNV__snp6.seg.txt
Markers File	/cromwell_root/broad-institute-gdac/gdc/reference/gistic/snp6.na35.remap.hg38.subset.noFreqCNV_As_Of_GDC_DR_12_v20180723.txt
Max Marker Spacing	10000
Reference Genome	/cromwell_root/broad-institute-gdac/gdc/reference/gistic/gistic2.refgene.hg38.UCSC.add_miR.160920.mat
CNV Files	/cromwell_root/broad-institute-gdac/gdc/reference/gistic/hg38_GDC_SNP6_CNV_list.161107.txt
Amplification Threshold	0.1
Deletion Threshold	0.1
Q-value Threshold	0.25
Cap Values	1.5
Broad Length Cutoff	0.7
Remove X-Chromosome	0
Confidence Level	0.99
Join Segment Size	4
Arm Level Peel Off	1
Maximum Sample Segments	2000
Do Gene GISTIC	1
Gene Collapse Method	extreme
