Broad GDAC analyses__2017_10_17 Run Status : TCGA-SKCM

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	Pipeline	NotRun	Successful	Unsuccessful
1	TM-Aggregate_Analysis_Features	0	1	0
2	TM-Aggregate_Molecular_Subtype_Clusters	0	1	0
3	TM-CopyNumber_Clustering_CNMF	0	1	0
4	TM-CopyNumber_Clustering_CNMF_thresholded	0	1	0
5	TM-CopyNumber_Gistic2	0	1	0
6	TM-CopyNumber_Gistic2_Postprocess_Focal	0	1	0
7	TM-Correlate_Clinical_vs_CopyNumber_Arm	0	0	1
8	TM-Correlate_Clinical_vs_CopyNumber_Focal	0	0	1
9	TM-Correlate_Clinical_vs_Molecular_Subtypes	0	0	1
10	TM-Correlate_Clinical_vs_mRNA	0	1	0
11	TM-Correlate_Clinical_vs_Mutation	0	0	1
12	TM-Correlate_Clinical_vs_Mutation_APOBEC_Categorical	0	0	1
13	TM-Correlate_Clinical_vs_Mutation_APOBEC_Continuous	0	1	0
14	TM-Correlate_Clinical_vs_MutationRate	0	1	0
15	TM-Correlate_molecularSubtype_vs_CopyNumber_Arm	0	1	0
16	TM-Correlate_molecularSubtype_vs_CopyNumber_Focal	0	1	0
17	TM-Correlate_molecularSubtype_vs_Mutation	0	1	0
18	TM-Methylation__HM27_Clustering_CNMF	1	0	0
19	TM-Methylation__HM27_Clustering_Consensus_Plus	1	0	0
20	TM-Methylation__HM27_Preprocess	0	0	1
21	TM-Methylation__HM450_Clustering_CNMF	0	1	0
22	TM-Methylation__HM450_Clustering_Consensus_Plus	0	1	0
23	TM-Methylation__HM450_Preprocess	0	1	0
24	TM-miR_Find_Direct_Targets	0	1	0
25	TM-miR_Mature_Clustering_CNMF	0	1	0
26	TM-miR_Mature_Clustering_Consensus_Plus	0	1	0
27	TM-miR_Mature_Preprocess	0	1	0
28	TM-mRNA_lincRNA_Clustering_CNMF	0	1	0
29	TM-mRNA_lincRNA_Clustering_Consensus_Plus	0	1	0
30	TM-mRNA_protein_coding_Clustering_CNMF	0	1	0
31	TM-mRNA_protein_coding_Clustering_Consensus_Plus	0	1	0
32	TM-Mutation_APOBEC	0	1	0
33	TM-Mutation_Assessor	0	1	0
34	TM-Mutation_MutSig2CV	1	0	0
35	TM-Mutation_Signature_Analyzer	0	1	0
	Total	3	26	6

Cohort	BCR	Clinical	CN	mRNA	miR	MAF	Methylation
TCGA-SKCM	470	470	368	367	352	368	368
TCGA-SKCM-NB	465	465	465	0	0	0	0
TCGA-SKCM-NT	3	3	2	1	2	0	2
TCGA-SKCM-TAM	1	1	0	1	1	0	1
TCGA-SKCM-TM	470	470	368	367	352	368	368
TCGA-SKCM-TP	104	104	104	103	97	104	104

This page generated on Fri Feb 9 16:18:32 2018

Broad GDAC Analyses Status analyses__2017_10_17 Run for Tumor Type: TCGA-SKCM

Broad GDAC Analyses Status
analyses__2017_10_17 Run for Tumor Type: TCGA-SKCM