Broad GDAC Analyses Status
analyses__2018_01_18 Run for Tumor Type: TCGA-PAAD-TP

Note that the links below, when activated, will require FireCloud credentials. Sample counts are given at the bottom of page.

PipelineNotRunInProcessSuccessfulUnsuccessful
1Aggregate_Analysis_Features0010
2Aggregate_Molecular_Subtype_Clusters0010
3CopyNumber_Clustering_CNMF0010
4CopyNumber_Clustering_CNMF_thresholded0010
5CopyNumber_Gistic20010
6CopyNumber_Gistic2_Postprocess_Focal0010
7Correlate_Clinical_vs_CopyNumber_Arm0010
8Correlate_Clinical_vs_CopyNumber_Focal0010
9Correlate_Clinical_vs_Molecular_Subtypes0010
10Correlate_Clinical_vs_mRNA0010
11Correlate_Clinical_vs_Mutation0010
12Correlate_Clinical_vs_Mutation_APOBEC_Categorical0010
13Correlate_Clinical_vs_Mutation_APOBEC_Continuous0010
14Correlate_Clinical_vs_MutationRate0010
15Correlate_molecularSubtype_vs_CopyNumber_Arm0010
16Correlate_molecularSubtype_vs_CopyNumber_Focal0010
17Correlate_molecularSubtype_vs_Mutation0010
18Methylation__HM27_Clustering_CNMF1000
19Methylation__HM27_Clustering_Consensus_Plus1000
20Methylation__HM27_Preprocess0001
21Methylation__HM450_Clustering_CNMF0010
22Methylation__HM450_Clustering_Consensus_Plus0001
23Methylation__HM450_Preprocess0010
24miR_Find_Direct_Targets0010
25miR_Mature_Clustering_CNMF0010
26miR_Mature_Clustering_Consensus_Plus0010
27miR_Mature_Preprocess0010
28mRNA_lincRNA_Clustering_CNMF0010
29mRNA_lincRNA_Clustering_Consensus_Plus0010
30mRNA_protein_coding_Clustering_CNMF0010
31mRNA_protein_coding_Clustering_Consensus_Plus0010
32Mutation_APOBEC0010
33Mutation_Assessor0010
34Mutation_MutSig2CV0010
35Mutation_Signature_Analyzer0010
36Pathway_GSEA_mRNA1000
37Pathway_GSEA_mRNA_5r3XxBehw7o1000
38Pathway_GSEA_mRNA_DInBymo_Obg1000
39Pathway_GSEA_mRNA_xHFJ_lxuCoU0001
Total50313

This page generated on Mon Apr 9 15:50:37 2018