Broad GDAC Analyses Status
analyses__2018_01_18 Run for Tumor Type: TCGA-SKCM-TM
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Pipeline
NotRun
InProcess
Successful
Unsuccessful
1
Aggregate_Analysis_Features
0
0
1
0
2
Aggregate_Molecular_Subtype_Clusters
0
0
1
0
3
CopyNumber_Clustering_CNMF
0
0
1
0
4
CopyNumber_Clustering_CNMF_thresholded
0
0
1
0
5
CopyNumber_Gistic2
0
0
1
0
6
CopyNumber_Gistic2_Postprocess_Focal
0
0
1
0
7
Correlate_Clinical_vs_CopyNumber_Arm
0
0
1
0
8
Correlate_Clinical_vs_CopyNumber_Focal
0
0
1
0
9
Correlate_Clinical_vs_Molecular_Subtypes
0
0
1
0
10
Correlate_Clinical_vs_mRNA
0
0
1
0
11
Correlate_Clinical_vs_Mutation
0
0
1
0
12
Correlate_Clinical_vs_Mutation_APOBEC_Categorical
0
0
1
0
13
Correlate_Clinical_vs_Mutation_APOBEC_Continuous
0
0
1
0
14
Correlate_Clinical_vs_MutationRate
0
0
1
0
15
Correlate_molecularSubtype_vs_CopyNumber_Arm
0
0
1
0
16
Correlate_molecularSubtype_vs_CopyNumber_Focal
0
0
1
0
17
Correlate_molecularSubtype_vs_Mutation
0
0
1
0
18
Methylation__HM27_Clustering_CNMF
1
0
0
0
19
Methylation__HM27_Clustering_Consensus_Plus
1
0
0
0
20
Methylation__HM27_Preprocess
0
0
0
1
21
Methylation__HM450_Clustering_CNMF
0
0
1
0
22
Methylation__HM450_Clustering_Consensus_Plus
0
0
1
0
23
Methylation__HM450_Preprocess
0
0
1
0
24
miR_Find_Direct_Targets
0
0
1
0
25
miR_Mature_Clustering_CNMF
0
0
1
0
26
miR_Mature_Clustering_Consensus_Plus
0
0
1
0
27
miR_Mature_Preprocess
0
0
1
0
28
mRNA_lincRNA_Clustering_CNMF
0
0
1
0
29
mRNA_lincRNA_Clustering_Consensus_Plus
0
0
1
0
30
mRNA_protein_coding_Clustering_CNMF
0
0
1
0
31
mRNA_protein_coding_Clustering_Consensus_Plus
0
0
1
0
32
Mutation_APOBEC
0
0
1
0
33
Mutation_Assessor
0
0
1
0
34
Mutation_MutSig2CV
0
0
1
0
35
Mutation_Signature_Analyzer
0
0
1
0
36
Pathway_GSEA_mRNA
1
0
0
0
37
Pathway_GSEA_mRNA_5r3XxBehw7o
1
0
0
0
38
Pathway_GSEA_mRNA_DInBymo_Obg
1
0
0
0
39
Pathway_GSEA_mRNA_xHFJ_lxuCoU
0
0
0
1
Total
5
0
32
2
This page generated on Mon Apr 9 15:50:39 2018