		Clinical Features	MRNA_CHIERARCHICAL		METHYLATION_CNMF		METHYLATION_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
amp_1p36.33	24 (24%)	76	0.28998	0.469	0.0203	0.0985	0.01129	0.0621
amp_1p36.13	14 (14%)	86	0.95438	0.973	0.44386	0.603	0.30429	0.485
amp_1q22	42 (42%)	58	0.15644	0.329	9.9999e-06	0.00165	5e-05	0.00236
amp_1q32.2	39 (39%)	61	0.10353	0.271	0.00143	0.0201	0.35675	0.545
amp_2p23.3	27 (27%)	73	0.76893	0.852	0.00447	0.0321	0.00367	0.0288
amp_2q11.1	48 (48%)	52	0.58305	0.715	0.03423	0.131	0.11014	0.282
amp_2q13	27 (27%)	73	0.80726	0.873	0.00288	0.0264	0.00238	0.0264
amp_3p21.31	27 (27%)	73	0.43723	0.596	0.0095999	0.0559	0.088499	0.245
amp_3q26.2	20 (20%)	80	0.13162	0.307	0.00265	0.0264	0.00013	0.00536
amp_3q27.1	27 (27%)	73	0.37114	0.556	3e-05	0.0022	2e-05	0.0022
amp_4p16.3	10 (10%)	90	0.42373	0.59	0.01867	0.092	0.18596	0.365
amp_5q35.2	10 (10%)	90	0.53849	0.691	0.01563	0.0794	0.13981	0.313
amp_6p21.32	44 (44%)	56	0.92205	0.954	0.11862	0.292	0.18444	0.364
amp_6q25.1	17 (17%)	83	0.22282	0.404	0.3738	0.556	0.69113	0.797
amp_7p13	29 (29%)	71	0.40142	0.576	0.00315	0.0278	0.097079	0.263
amp_7q11.23	35 (35%)	65	0.40492	0.576	0.1546	0.329	0.61327	0.741
amp_7q22.1	32 (32%)	68	0.16235	0.335	0.064029	0.201	0.25086	0.429
amp_8q22.3	27 (27%)	73	0.0077299	0.0472	0.31374	0.495	0.65365	0.768
amp_9p24.3	38 (38%)	62	0.071999	0.216	0.10193	0.269	0.46345	0.627
amp_9q34.3	13 (13%)	87	0.40352	0.576	0.02554	0.113	0.4951	0.648
amp_10q23.2	30 (30%)	70	0.76541	0.852	0.79961	0.868	0.51319	0.669
amp_10q26.13	34 (34%)	66	0.48556	0.638	0.0329	0.128	0.04533	0.16
amp_11p15.2	5 (5%)	95	0.23741	0.416	0.11359	0.288	0.2612	0.44
amp_11p11.2	15 (15%)	85	0.87414	0.92	0.0052599	0.0362	0.00335	0.0278
amp_11q13.2	22 (22%)	78	0.92018	0.954	0.0098199	0.0559	0.054819	0.185
amp_11q13.3	19 (19%)	81	0.64577	0.764	0.00019	0.00627	0.00447	0.0321
amp_12p13.33	37 (37%)	63	0.66387	0.773	0.2356	0.416	0.04365	0.159
amp_12q13.2	24 (24%)	76	0.070819	0.215	0.02748	0.118	0.0058699	0.0395
amp_12q24.31	21 (21%)	79	0.28798	0.468	0.061069	0.198	0.1187	0.292
amp_13q12.11	14 (14%)	86	0.16833	0.341	0.33495	0.517	0.00113	0.0169
amp_14q24.2	15 (15%)	85	0.42936	0.593	0.00034	0.00935	0.0073799	0.046
amp_15q24.2	16 (16%)	84	0.4294	0.593	0.11587	0.29	0.39061	0.57
amp_15q26.3	35 (35%)	65	0.62232	0.745	0.57218	0.705	0.62331	0.745
amp_16p11.2	31 (31%)	69	0.098569	0.264	0.13997	0.313	0.061889	0.198
amp_16q22.2	19 (19%)	81	0.9535	0.973	0.19564	0.374	0.35857	0.545
amp_17q12	21 (21%)	79	0.10026	0.267	4e-05	0.0022	0.00267	0.0264
amp_17q24.1	18 (18%)	82	0.17628	0.353	0.0376	0.143	0.17155	0.345
amp_18p11.31	20 (20%)	80	0.093809	0.256	0.25318	0.431	0.40635	0.576
amp_19p13.2	20 (20%)	80	0.60022	0.731	0.00281	0.0264	0.0061499	0.0406
amp_19p13.11	22 (22%)	78	0.23556	0.416	0.02997	0.122	0.04433	0.159
amp_19q12	18 (18%)	82	0.60401	0.733	0.02569	0.113	0.00384	0.0293
amp_19q13.2	18 (18%)	82	0.96241	0.977	0.013	0.0692	0.00346	0.0278
amp_20q13.33	28 (28%)	72	0.47279	0.632	0.00060999	0.0144	0.00166	0.0211
amp_22q13.2	19 (19%)	81	0.95382	0.973	0.21882	0.401	0.43221	0.594
amp_xp11.23	22 (22%)	78	0.76853	0.852	0.27156	0.451	0.53125	0.69
amp_xp11.23	31 (31%)	69	0.32449	0.507	0.56	0.703	0.24063	0.416
amp_xq24	32 (32%)	68	0.87353	0.92	0.78251	0.862	0.20551	0.385
amp_xq28	40 (40%)	60	0.10806	0.279	0.46852	0.628	0.81098	0.875
del_1p36.32	11 (11%)	89	0.75854	0.851	0.14927	0.322	0.47681	0.632
del_1p36.12	16 (16%)	84	0.73206	0.827	0.0092099	0.0553	0.077099	0.224
del_1p13.2	12 (12%)	88	0.32911	0.512	0.00065999	0.0145	0.00205	0.0251
del_1q32.2	13 (13%)	87	0.7228	0.822	0.55852	0.703	0.21028	0.391
del_2q31.2	9 (9%)	91	0.86247	0.92	0.87096	0.92	0.29189	0.47
del_3p26.3	15 (15%)	85	0.40383	0.576	0.02224	0.105	0.071049	0.215
del_3p21.1	13 (13%)	87	0.86701	0.92	0.02441	0.11	0.02887	0.122
del_3p12.2	22 (22%)	78	0.25888	0.438	0.48527	0.638	0.62727	0.747
del_3q25.1	6 (6%)	94	0.69653	0.8	0.56919	0.705	0.1447	0.316
del_3q25.33	5 (5%)	95	0.40166	0.576	0.057639	0.188	0.16378	0.336
del_4p15.31	13 (13%)	87	0.12994	0.306	0.03254	0.128	0.063309	0.201
del_4q13.2	25 (25%)	75	0.056619	0.187	0.070249	0.215	0.081099	0.231
del_4q21.21	24 (24%)	76	0.2029	0.384	0.16508	0.336	0.04372	0.159
del_5q23.1	13 (13%)	87	0.084749	0.237	0.00146	0.0201	0.04687	0.161
del_6q22.31	9 (9%)	91	0.12768	0.305	4e-05	0.0022	0.0070699	0.0454
del_7p22.1	9 (9%)	91	0.57138	0.705	0.317	0.498	0.23923	0.416
del_7q11.21	16 (16%)	84	0.65042	0.767	0.26696	0.447	0.78868	0.865
del_7q11.23	6 (6%)	94	0.34697	0.533	0.8753	0.92	0.83771	0.898
del_7q22.1	11 (11%)	89	0.79811	0.868	0.1377	0.313	0.2366	0.416
del_7q22.1	7 (7%)	93	0.6982	0.8	0.39553	0.575	0.2151	0.397
del_8p23.2	11 (11%)	89	0.13623	0.313	0.00045	0.0114	0.00021	0.0063
del_9p24.3	15 (15%)	85	0.57087	0.705	0.14124	0.313	0.0046	0.0323
del_9p24.1	11 (11%)	89	0.13842	0.313	0.00098999	0.0156	0.00090999	0.015
del_9q21.32	30 (30%)	70	0.33234	0.515	0.064849	0.202	0.14041	0.313
del_10q11.22	6 (6%)	94	0.94441	0.973	0.02268	0.105	0.36882	0.556
del_10q25.3	13 (13%)	87	0.074239	0.219	0.090249	0.248	0.12619	0.304
del_11p15.5	11 (11%)	89	0.63325	0.752	9.9999e-06	0.00165	0.00074999	0.0145
del_11p15.3	15 (15%)	85	0.53614	0.691	0.01384	0.0725	0.00251	0.0264
del_11p11.12	17 (17%)	83	0.61774	0.744	0.1436	0.316	0.54593	0.695
del_11q24.2	14 (14%)	86	1	1	0.0071599	0.0454	0.00083999	0.0146
del_12p13.33	4 (4%)	96	1	1	0.016	0.08	0.18941	0.368
del_12p11.23	10 (10%)	90	0.53805	0.691	0.20383	0.384	0.19596	0.374
del_12q21.32	18 (18%)	82	0.9186	0.954	0.19595	0.374	0.37309	0.556
del_13q12.11	16 (16%)	84	0.41018	0.578	0.59715	0.73	0.27387	0.452
del_13q12.11	14 (14%)	86	0.02681	0.116	0.03237	0.128	0.37996	0.562
del_13q31.3	11 (11%)	89	0.81996	0.881	0.02331	0.107	0.10506	0.273
del_14q32.31	20 (20%)	80	0.55595	0.703	0.22678	0.407	0.12562	0.304
del_15q11.2	20 (20%)	80	0.2207	0.402	0.00288	0.0264	0.15669	0.329
del_15q15.1	26 (26%)	74	0.01061	0.0593	0.21091	0.391	0.41183	0.578
del_15q24.2	28 (28%)	72	0.17981	0.357	0.02957	0.122	0.02985	0.122
del_15q26.3	15 (15%)	85	0.28577	0.467	0.23969	0.416	0.38984	0.57
del_16p13.3	24 (24%)	76	0.18867	0.368	0.65805	0.77	0.15528	0.329
del_16p13.3	9 (9%)	91	0.79664	0.868	0.15735	0.329	0.04403	0.159
del_16p11.2	21 (21%)	79	0.24875	0.428	0.00391	0.0293	0.02189	0.105
del_16q22.1	11 (11%)	89	0.46564	0.627	0.00335	0.0278	0.04626	0.161
del_16q22.2	16 (16%)	84	0.96838	0.98	0.0146	0.0753	0.22668	0.407
del_17p11.2	17 (17%)	83	0.2835	0.465	0.00078999	0.0145	0.00076999	0.0145
del_17q21.32	10 (10%)	90	0.5455	0.695	0.00266	0.0264	0.16219	0.335
del_17q24.1	11 (11%)	89	0.90086	0.941	0.38488	0.567	0.37019	0.556
del_18q22.1	16 (16%)	84	0.47582	0.632	0.077229	0.224	0.04546	0.16
del_19p13.3	23 (23%)	77	0.75891	0.851	0.00016	0.00587	0.00152	0.0201
del_19p13.2	17 (17%)	83	0.95578	0.973	0.12879	0.306	0.7252	0.822
del_19p12	29 (29%)	71	0.98486	0.994	0.78322	0.862	0.54774	0.695
del_19q13.33	13 (13%)	87	1	1	0.00268	0.0264	0.30927	0.491
del_20p13	9 (9%)	91	0.70278	0.802	0.11499	0.29	0.073829	0.219
del_20q13.13	6 (6%)	94	0.56924	0.705	0.68574	0.794	0.27218	0.451
del_22q13.2	22 (22%)	78	0.88738	0.93	0.43672	0.596	0.14729	0.32
del_xp11.23	47 (47%)	53	0.30308	0.485	0.12536	0.304	0.0302	0.122
del_xp11.23	36 (36%)	64	0.76118	0.851	0.03905	0.146	0.0096599	0.0559
del_xp11.22	29 (29%)	71	0.66554	0.773	0.01274	0.0689	0.079619	0.228
del_xq24	32 (32%)	68	0.13228	0.307	0.04927	0.168	0.081929	0.231
del_xq27.3	34 (34%)	66	0.41495	0.58	0.00337	0.0278	0.056629	0.187
