Broad GDAC Analyses Status
awg_tcga-brca__2018_06_13 Run for Tumor Type: TCGA-BRCA-TP

Note that the links below, when activated, will require FireCloud credentials. Sample counts are given at the bottom of page.

PipelineNotRunInProcessSuccessfulUnsuccessful
1Aggregate_Analysis_Features1000
2Aggregate_Molecular_Subtype_Clusters1000
3CopyNumber_Clustering_CNMF0100
4CopyNumber_Clustering_CNMF_thresholded0010
5CopyNumber_Gistic20010
6CopyNumber_Gistic2_Postprocess_Focal0010
7Correlate_Clinical_vs_CopyNumber_Arm0010
8Correlate_Clinical_vs_CopyNumber_Focal0010
9Correlate_Clinical_vs_Molecular_Subtypes1000
10Correlate_Clinical_vs_mRNA0010
11Correlate_Clinical_vs_Mutation0010
12Correlate_Clinical_vs_Mutation_APOBEC_Categorical0010
13Correlate_Clinical_vs_Mutation_APOBEC_Continuous0010
14Correlate_Clinical_vs_MutationRate0010
15Correlate_molecularSubtype_vs_CopyNumber_Arm1000
16Correlate_molecularSubtype_vs_CopyNumber_Focal1000
17Correlate_molecularSubtype_vs_Mutation1000
18digraphAnalysesAggregate_Molecular_Subtype_Clusters1000
19Methylation__HM27_Clustering_CNMF0010
20Methylation__HM27_Clustering_Consensus_Plus0001
21Methylation__HM27_Preprocess0010
22Methylation__HM450_Clustering_CNMF0010
23Methylation__HM450_Clustering_Consensus_Plus0010
24Methylation__HM450_Preprocess0010
25miR_Find_Direct_Targets0010
26miR_Mature_Clustering_CNMF0100
27miR_Mature_Clustering_Consensus_Plus0010
28miR_Mature_Preprocess0010
29mRNA_lincRNA_Clustering_CNMF0100
30mRNA_lincRNA_Clustering_Consensus_Plus0010
31mRNA_protein_coding_Clustering_CNMF0100
32mRNA_protein_coding_Clustering_Consensus_Plus0010
33Mutation_APOBEC0010
34Mutation_Assessor0010
35Mutation_MutSig2CV0010
36Mutation_Signature_Analyzer0010
37Pathway_GSEA_mRNA1000
Total84241

This page generated on Fri Jun 22 13:19:15 2018