Broad GDAC Analyses Status
cptac3__2018_07_11 Run for Tumor Type: CPTAC3-CM-TM

Note that the links below, when activated, will require FireCloud credentials. Sample counts are given at the bottom of page.

PipelineNotRunInProcessSuccessfulUnsuccessful
1Aggregate_Analysis_Features0001
2Aggregate_Molecular_Subtype_Clusters0001
3Clinical_Pick_Tier10001
4CopyNumber_Clustering_CNMF1000
5CopyNumber_Clustering_CNMF_thresholded1000
6CopyNumber_Gistic2_Postprocess_Focal1000
7CopyNumber_Gistic2_wxs0001
8Correlate_Clinical_vs_CopyNumber_Arm1000
9Correlate_Clinical_vs_CopyNumber_Focal1000
10Correlate_Clinical_vs_Molecular_Subtypes1000
11Correlate_Clinical_vs_mRNA0001
12Correlate_Clinical_vs_Mutation1000
13Correlate_Clinical_vs_Mutation_APOBEC_Categorical1000
14Correlate_Clinical_vs_Mutation_APOBEC_Continuous1000
15Correlate_Clinical_vs_MutationRate1000
16Correlate_molecularSubtype_vs_CopyNumber_Arm1000
17Correlate_molecularSubtype_vs_CopyNumber_Focal1000
18Correlate_molecularSubtype_vs_Mutation1000
19Merge_clinical0010
20Merge_CNV__wxs0001
21Merge_methylation__EPIC0010
22Merge_mRNA__geneExp__FPKM0001
23Merge_SNV__varscan0001
24Methylation__EPIC_Clustering_CNMF0001
25Methylation__EPIC_Clustering_Consensus_Plus0001
26Methylation__EPIC_Preprocess0010
27mRNA_Preprocess_FPKM1000
28mRNA_protein_coding_Clustering_CNMF0001
29mRNA_protein_coding_Clustering_Consensus_Plus0001
30Mutation_APOBEC1000
31Mutation_Assessor1000
32Mutation_MutSig2CV_hg190001
33Mutation_Signature_Analyzer1000
Total170313

This page generated on Mon Oct 8 12:12:05 2018