Broad GDAC Analyses Status
stddata__2017_09_19 Run for Tumor Type: TCGA-COAD

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PipelineNotRunInProcessSuccessfulUnsuccessful
1Clinical_Pick_Tier10010
2Merge_clinical0010
3Merge_CNV__snp60010
4Merge_CNV__unfiltered__snp60010
5Merge_methylation__HM270010
6Merge_methylation__HM4500010
7Merge_miR__geneExp0010
8Merge_miR__isoformExp0010
9Merge_mRNA__geneExp__FPKM0010
10Merge_mRNA__geneExpNormed__FPKM0010
11Merge_SNV__mutect0010
12mRNA_Preprocess0010
13TR-Clinical_Pick_Tier10001
14TR-Merge_clinical0010
15TR-Merge_CNV__snp60010
16TR-Merge_CNV__unfiltered__snp60010
17TR-Merge_methylation__HM270001
18TR-Merge_methylation__HM4500001
19TR-Merge_miR__geneExp0010
20TR-Merge_miR__isoformExp0010
21TR-Merge_mRNA__geneExp__FPKM0010
22TR-Merge_mRNA__geneExpNormed__FPKM0010
23TR-Merge_SNV__mutect0010
24TR-mRNA_Preprocess0010
25TP-Clinical_Pick_Tier10010
26TP-Merge_clinical0010
27TP-Merge_CNV__snp60010
28TP-Merge_CNV__unfiltered__snp60010
29TP-Merge_methylation__HM270010
30TP-Merge_methylation__HM4500010
31TP-Merge_miR__geneExp0010
32TP-Merge_miR__isoformExp0010
33TP-Merge_mRNA__geneExp__FPKM0010
34TP-Merge_mRNA__geneExpNormed__FPKM0010
35TP-Merge_SNV__mutect0010
36TP-mRNA_Preprocess0010
37TM-Clinical_Pick_Tier10001
38TM-Merge_clinical0010
39TM-Merge_CNV__snp60010
40TM-Merge_CNV__unfiltered__snp60010
41TM-Merge_methylation__HM270001
42TM-Merge_methylation__HM4500010
43TM-Merge_miR__geneExp0010
44TM-Merge_miR__isoformExp0010
45TM-Merge_mRNA__geneExp__FPKM0010
46TM-Merge_mRNA__geneExpNormed__FPKM0010
47TM-Merge_SNV__mutect0010
48TM-mRNA_Preprocess0010
49NT-Clinical_Pick_Tier10010
50NT-Merge_clinical0010
51NT-Merge_CNV__snp60010
52NT-Merge_CNV__unfiltered__snp60010
53NT-Merge_methylation__HM270010
54NT-Merge_methylation__HM4500010
55NT-Merge_miR__geneExp0010
56NT-Merge_miR__isoformExp0010
57NT-Merge_mRNA__geneExp__FPKM0010
58NT-Merge_mRNA__geneExpNormed__FPKM0010
59NT-Merge_SNV__mutect0001
60NT-mRNA_Preprocess0010
61NB-Clinical_Pick_Tier10010
62NB-Merge_clinical0010
63NB-Merge_CNV__snp60010
64NB-Merge_CNV__unfiltered__snp60010
65NB-Merge_methylation__HM270001
66NB-Merge_methylation__HM4500001
67NB-Merge_miR__geneExp0001
68NB-Merge_miR__isoformExp0010
69NB-Merge_mRNA__geneExp__FPKM0001
70NB-Merge_mRNA__geneExpNormed__FPKM0001
71NB-Merge_SNV__mutect0001
72NB-mRNA_Preprocess1000
Total105912

CohortBCRClinicalCNmRNAmiRMAFMethylation
TCGA-COAD461459450456444432458
TCGA-COAD-FFPE1313121371212
TCGA-COAD-NB3743743740000
TCGA-COAD-NT939390418075
TCGA-COAD-TM1111111
TCGA-COAD-TP461459450456444432458
TCGA-COAD-TR1111110

This page generated on Wed Sep 20 21:27:48 2017