Broad GDAC Standard Data Status
stddata__2017_10_17 Run for Tumor Type: TCGA-BLCA
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Pipeline Dataset
NotAvailable
InProcess
Successful
Unsuccessful
1
Clinical_Pick_Tier1
0
0
1
0
2
Merge_clinical
0
0
1
0
3
Merge_CNV__snp6
0
0
1
0
4
Merge_CNV__unfiltered__snp6
0
0
1
0
5
Merge_methylation__HM27
0
0
0
1
6
Merge_methylation__HM450
0
0
1
0
7
Merge_miR__geneExp
0
0
1
0
8
Merge_miR__isoformExp
0
0
1
0
9
Merge_mRNA__geneExp__FPKM
0
0
1
0
10
Merge_mRNA__geneExpNormed__FPKM
0
0
1
0
11
Merge_SNV__mutect
0
0
1
0
12
mRNA_Preprocess
1
0
0
0
13
TP-Clinical_Pick_Tier1
0
0
1
0
14
TP-Merge_clinical
0
0
1
0
15
TP-Merge_CNV__snp6
0
0
1
0
16
TP-Merge_CNV__unfiltered__snp6
0
0
1
0
17
TP-Merge_methylation__HM27
0
0
0
1
18
TP-Merge_methylation__HM450
0
0
1
0
19
TP-Merge_miR__geneExp
0
0
1
0
20
TP-Merge_miR__isoformExp
0
0
1
0
21
TP-Merge_mRNA__geneExp__FPKM
0
0
1
0
22
TP-Merge_mRNA__geneExpNormed__FPKM
0
0
1
0
23
TP-Merge_SNV__mutect
0
0
1
0
24
TP-mRNA_Preprocess
1
0
0
0
25
TM-Clinical_Pick_Tier1
0
0
0
1
26
TM-Merge_clinical
0
0
1
0
27
TM-Merge_CNV__snp6
0
0
1
0
28
TM-Merge_CNV__unfiltered__snp6
0
0
1
0
29
TM-Merge_methylation__HM27
0
0
0
1
30
TM-Merge_methylation__HM450
0
0
1
0
31
TM-Merge_miR__geneExp
0
0
1
0
32
TM-Merge_miR__isoformExp
0
0
1
0
33
TM-Merge_mRNA__geneExp__FPKM
0
0
0
1
34
TM-Merge_mRNA__geneExpNormed__FPKM
0
0
0
1
35
TM-Merge_SNV__mutect
0
0
1
0
36
TM-mRNA_Preprocess
1
0
0
0
37
NT-Clinical_Pick_Tier1
0
0
1
0
38
NT-Merge_clinical
0
0
1
0
39
NT-Merge_CNV__snp6
0
0
1
0
40
NT-Merge_CNV__unfiltered__snp6
0
0
1
0
41
NT-Merge_methylation__HM27
0
0
0
1
42
NT-Merge_methylation__HM450
0
0
1
0
43
NT-Merge_miR__geneExp
0
0
1
0
44
NT-Merge_miR__isoformExp
0
0
1
0
45
NT-Merge_mRNA__geneExp__FPKM
0
0
1
0
46
NT-Merge_mRNA__geneExpNormed__FPKM
0
0
1
0
47
NT-Merge_SNV__mutect
0
0
0
1
48
NT-mRNA_Preprocess
1
0
0
0
49
NB-Clinical_Pick_Tier1
0
0
1
0
50
NB-Merge_clinical
0
0
1
0
51
NB-Merge_CNV__snp6
0
0
1
0
52
NB-Merge_CNV__unfiltered__snp6
0
0
1
0
53
NB-Merge_methylation__HM27
0
0
0
1
54
NB-Merge_methylation__HM450
0
0
0
1
55
NB-Merge_miR__geneExp
0
0
0
1
56
NB-Merge_miR__isoformExp
0
0
1
0
57
NB-Merge_mRNA__geneExp__FPKM
0
0
0
1
58
NB-Merge_mRNA__geneExpNormed__FPKM
0
0
0
1
59
NB-Merge_SNV__mutect
0
0
0
1
60
NB-mRNA_Preprocess
1
0
0
0
61
FFPE-Clinical_Pick_Tier1
0
0
1
0
62
FFPE-Merge_clinical
0
0
1
0
63
FFPE-Merge_CNV__snp6
0
0
1
0
64
FFPE-Merge_CNV__unfiltered__snp6
0
0
1
0
65
FFPE-Merge_methylation__HM27
0
0
0
1
66
FFPE-Merge_methylation__HM450
0
0
1
0
67
FFPE-Merge_miR__geneExp
0
0
1
0
68
FFPE-Merge_miR__isoformExp
0
0
1
0
69
FFPE-Merge_mRNA__geneExp__FPKM
0
0
1
0
70
FFPE-Merge_mRNA__geneExpNormed__FPKM
0
0
1
0
71
FFPE-Merge_SNV__mutect
0
0
1
0
72
FFPE-mRNA_Preprocess
1
0
0
0
Total
6
0
51
15
Cohort
BCR
Clinical
CN
mRNA
miR
MAF
Methylation
TCGA-BLCA
412
412
412
408
409
412
412
TCGA-BLCA-FFPE
3
3
2
3
3
3
3
TCGA-BLCA-NB
361
361
361
0
0
0
0
TCGA-BLCA-NT
36
36
34
19
19
0
21
TCGA-BLCA-TM
1
1
1
0
1
1
1
TCGA-BLCA-TP
412
412
412
408
409
412
412
This page generated on Sat Dec 9 11:28:10 2017