Broad GDAC stddata__2017_10_17 Run Status : TCGA-BRCA

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	Pipeline Dataset	NotAvailable	Successful	Unsuccessful
1	Clinical_Pick_Tier1	0	1	0
2	Merge_clinical	0	1	0
3	Merge_CNV__snp6	0	1	0
4	Merge_CNV__unfiltered__snp6	0	1	0
5	Merge_methylation__HM27	0	1	0
6	Merge_methylation__HM450	0	1	0
7	Merge_miR__geneExp	0	1	0
8	Merge_miR__isoformExp	0	1	0
9	Merge_mRNA__geneExp__FPKM	0	1	0
10	Merge_mRNA__geneExpNormed__FPKM	0	1	0
11	Merge_SNV__mutect	0	1	0
12	mRNA_Preprocess	1	0	0
13	TP-Clinical_Pick_Tier1	0	1	0
14	TP-Merge_clinical	0	1	0
15	TP-Merge_CNV__snp6	0	1	0
16	TP-Merge_CNV__unfiltered__snp6	0	1	0
17	TP-Merge_methylation__HM27	0	1	0
18	TP-Merge_methylation__HM450	0	1	0
19	TP-Merge_miR__geneExp	0	1	0
20	TP-Merge_miR__isoformExp	0	1	0
21	TP-Merge_mRNA__geneExp__FPKM	0	1	0
22	TP-Merge_mRNA__geneExpNormed__FPKM	0	1	0
23	TP-Merge_SNV__mutect	0	1	0
24	TP-mRNA_Preprocess	0	1	0
25	TM-Clinical_Pick_Tier1	0	1	0
26	TM-Merge_clinical	0	1	0
27	TM-Merge_CNV__snp6	0	1	0
28	TM-Merge_CNV__unfiltered__snp6	0	1	0
29	TM-Merge_methylation__HM27	0	1	0
30	TM-Merge_methylation__HM450	0	1	0
31	TM-Merge_miR__geneExp	0	1	0
32	TM-Merge_miR__isoformExp	0	1	0
33	TM-Merge_mRNA__geneExp__FPKM	0	1	0
34	TM-Merge_mRNA__geneExpNormed__FPKM	0	1	0
35	TM-Merge_SNV__mutect	0	1	0
36	TM-mRNA_Preprocess	1	0	0
37	NT-Clinical_Pick_Tier1	0	1	0
38	NT-Merge_clinical	0	1	0
39	NT-Merge_CNV__snp6	0	1	0
40	NT-Merge_CNV__unfiltered__snp6	0	1	0
41	NT-Merge_methylation__HM27	0	1	0
42	NT-Merge_methylation__HM450	0	1	0
43	NT-Merge_miR__geneExp	0	1	0
44	NT-Merge_miR__isoformExp	0	1	0
45	NT-Merge_mRNA__geneExp__FPKM	0	1	0
46	NT-Merge_mRNA__geneExpNormed__FPKM	0	1	0
47	NT-Merge_SNV__mutect	0	0	1
48	NT-mRNA_Preprocess	1	0	0
49	NB-Clinical_Pick_Tier1	0	1	0
50	NB-Merge_clinical	0	1	0
51	NB-Merge_CNV__snp6	0	1	0
52	NB-Merge_CNV__unfiltered__snp6	0	1	0
53	NB-Merge_methylation__HM27	0	0	1
54	NB-Merge_methylation__HM450	0	0	1
55	NB-Merge_miR__geneExp	0	0	1
56	NB-Merge_miR__isoformExp	0	1	0
57	NB-Merge_mRNA__geneExp__FPKM	0	0	1
58	NB-Merge_mRNA__geneExpNormed__FPKM	0	0	1
59	NB-Merge_SNV__mutect	0	0	1
60	NB-mRNA_Preprocess	1	0	0
61	FFPE-Clinical_Pick_Tier1	0	1	0
62	FFPE-Merge_clinical	0	1	0
63	FFPE-Merge_CNV__snp6	0	1	0
64	FFPE-Merge_CNV__unfiltered__snp6	0	1	0
65	FFPE-Merge_methylation__HM27	0	0	1
66	FFPE-Merge_methylation__HM450	0	1	0
67	FFPE-Merge_miR__geneExp	0	1	0
68	FFPE-Merge_miR__isoformExp	0	1	0
69	FFPE-Merge_mRNA__geneExp__FPKM	0	1	0
70	FFPE-Merge_mRNA__geneExpNormed__FPKM	0	1	0
71	FFPE-Merge_SNV__mutect	0	1	0
72	FFPE-mRNA_Preprocess	1	0	0
	Total	5	59	8

Cohort	BCR	Clinical	CN	mRNA	miR	MAF	Methylation
TCGA-BRCA	1097	1096	1094	1085	1078	1044	1094
TCGA-BRCA-FFPE	12	12	6	12	12	11	6
TCGA-BRCA-NB	976	976	977	0	0	0	0
TCGA-BRCA-NT	162	162	134	113	104	0	123
TCGA-BRCA-TM	7	7	7	7	7	7	7
TCGA-BRCA-TP	1097	1096	1094	1085	1078	1044	1094

This page generated on Sat Dec 9 11:28:11 2017

Broad GDAC Standard Data Status stddata__2017_10_17 Run for Tumor Type: TCGA-BRCA

Broad GDAC Standard Data Status
stddata__2017_10_17 Run for Tumor Type: TCGA-BRCA