Broad GDAC stddata__2017_10_17 Run Status : TCGA-COAD

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	Pipeline Dataset	NotAvailable	Successful	Unsuccessful
1	Clinical_Pick_Tier1	0	1	0
2	Merge_clinical	0	1	0
3	Merge_CNV__snp6	0	1	0
4	Merge_CNV__unfiltered__snp6	0	1	0
5	Merge_methylation__HM27	0	1	0
6	Merge_methylation__HM450	0	1	0
7	Merge_miR__geneExp	0	1	0
8	Merge_miR__isoformExp	0	1	0
9	Merge_mRNA__geneExp__FPKM	0	1	0
10	Merge_mRNA__geneExpNormed__FPKM	0	1	0
11	Merge_SNV__mutect	0	1	0
12	mRNA_Preprocess	1	0	0
13	TR-Clinical_Pick_Tier1	0	0	1
14	TR-Merge_clinical	0	1	0
15	TR-Merge_CNV__snp6	0	1	0
16	TR-Merge_CNV__unfiltered__snp6	0	1	0
17	TR-Merge_methylation__HM27	0	0	1
18	TR-Merge_methylation__HM450	0	0	1
19	TR-Merge_miR__geneExp	0	1	0
20	TR-Merge_miR__isoformExp	0	1	0
21	TR-Merge_mRNA__geneExp__FPKM	0	1	0
22	TR-Merge_mRNA__geneExpNormed__FPKM	0	1	0
23	TR-Merge_SNV__mutect	0	1	0
24	TR-mRNA_Preprocess	1	0	0
25	TP-Clinical_Pick_Tier1	0	1	0
26	TP-Merge_clinical	0	1	0
27	TP-Merge_CNV__snp6	0	1	0
28	TP-Merge_CNV__unfiltered__snp6	0	1	0
29	TP-Merge_methylation__HM27	0	1	0
30	TP-Merge_methylation__HM450	0	1	0
31	TP-Merge_miR__geneExp	0	1	0
32	TP-Merge_miR__isoformExp	0	1	0
33	TP-Merge_mRNA__geneExp__FPKM	0	1	0
34	TP-Merge_mRNA__geneExpNormed__FPKM	0	1	0
35	TP-Merge_SNV__mutect	0	1	0
36	TP-mRNA_Preprocess	1	0	0
37	TM-Clinical_Pick_Tier1	0	0	1
38	TM-Merge_clinical	0	1	0
39	TM-Merge_CNV__snp6	0	1	0
40	TM-Merge_CNV__unfiltered__snp6	0	1	0
41	TM-Merge_methylation__HM27	0	0	1
42	TM-Merge_methylation__HM450	0	1	0
43	TM-Merge_miR__geneExp	0	1	0
44	TM-Merge_miR__isoformExp	0	1	0
45	TM-Merge_mRNA__geneExp__FPKM	0	1	0
46	TM-Merge_mRNA__geneExpNormed__FPKM	0	1	0
47	TM-Merge_SNV__mutect	0	1	0
48	TM-mRNA_Preprocess	1	0	0
49	NT-Clinical_Pick_Tier1	0	1	0
50	NT-Merge_clinical	0	1	0
51	NT-Merge_CNV__snp6	0	1	0
52	NT-Merge_CNV__unfiltered__snp6	0	1	0
53	NT-Merge_methylation__HM27	0	1	0
54	NT-Merge_methylation__HM450	0	1	0
55	NT-Merge_miR__geneExp	0	1	0
56	NT-Merge_miR__isoformExp	0	1	0
57	NT-Merge_mRNA__geneExp__FPKM	0	1	0
58	NT-Merge_mRNA__geneExpNormed__FPKM	0	1	0
59	NT-Merge_SNV__mutect	0	0	1
60	NT-mRNA_Preprocess	1	0	0
61	NB-Clinical_Pick_Tier1	0	1	0
62	NB-Merge_clinical	0	1	0
63	NB-Merge_CNV__snp6	0	1	0
64	NB-Merge_CNV__unfiltered__snp6	0	1	0
65	NB-Merge_methylation__HM27	0	0	1
66	NB-Merge_methylation__HM450	0	0	1
67	NB-Merge_miR__geneExp	0	0	1
68	NB-Merge_miR__isoformExp	0	1	0
69	NB-Merge_mRNA__geneExp__FPKM	0	0	1
70	NB-Merge_mRNA__geneExpNormed__FPKM	0	0	1
71	NB-Merge_SNV__mutect	0	0	1
72	NB-mRNA_Preprocess	1	0	0
73	FFPE-Clinical_Pick_Tier1	0	1	0
74	FFPE-Merge_clinical	0	1	0
75	FFPE-Merge_CNV__snp6	0	1	0
76	FFPE-Merge_CNV__unfiltered__snp6	0	1	0
77	FFPE-Merge_methylation__HM27	0	0	1
78	FFPE-Merge_methylation__HM450	0	1	0
79	FFPE-Merge_miR__geneExp	0	1	0
80	FFPE-Merge_miR__isoformExp	0	1	0
81	FFPE-Merge_mRNA__geneExp__FPKM	0	1	0
82	FFPE-Merge_mRNA__geneExpNormed__FPKM	0	1	0
83	FFPE-Merge_SNV__mutect	0	1	0
84	FFPE-mRNA_Preprocess	1	0	0
	Total	7	64	13

Cohort	BCR	Clinical	CN	mRNA	miR	MAF	Methylation
TCGA-COAD	461	459	450	456	444	432	458
TCGA-COAD-FFPE	13	13	12	13	7	12	12
TCGA-COAD-NB	374	374	374	0	0	0	0
TCGA-COAD-NT	93	93	90	41	8	0	75
TCGA-COAD-TM	1	1	1	1	1	1	1
TCGA-COAD-TP	461	459	450	456	444	432	458
TCGA-COAD-TR	1	1	1	1	1	1	0

This page generated on Sat Dec 9 11:28:12 2017

Broad GDAC Standard Data Status stddata__2017_10_17 Run for Tumor Type: TCGA-COAD

Broad GDAC Standard Data Status
stddata__2017_10_17 Run for Tumor Type: TCGA-COAD