Broad GDAC Standard Data Status
stddata__2017_10_17 Run for Tumor Type: TCGA-ESCA

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Pipeline DatasetNotAvailableInProcessSuccessfulUnsuccessful
1Clinical_Pick_Tier10010
2Merge_clinical0010
3Merge_CNV__snp60010
4Merge_CNV__unfiltered__snp60010
5Merge_methylation__HM270001
6Merge_methylation__HM4500010
7Merge_miR__geneExp0010
8Merge_miR__isoformExp0010
9Merge_mRNA__geneExp__FPKM0010
10Merge_mRNA__geneExpNormed__FPKM0010
11Merge_SNV__mutect0010
12mRNA_Preprocess1000
13TP-Clinical_Pick_Tier10010
14TP-Merge_clinical0010
15TP-Merge_CNV__snp60010
16TP-Merge_CNV__unfiltered__snp60010
17TP-Merge_methylation__HM270001
18TP-Merge_methylation__HM4500010
19TP-Merge_miR__geneExp0010
20TP-Merge_miR__isoformExp0010
21TP-Merge_mRNA__geneExp__FPKM0010
22TP-Merge_mRNA__geneExpNormed__FPKM0010
23TP-Merge_SNV__mutect0010
24TP-mRNA_Preprocess1000
25TM-Clinical_Pick_Tier10001
26TM-Merge_clinical0010
27TM-Merge_CNV__snp60010
28TM-Merge_CNV__unfiltered__snp60010
29TM-Merge_methylation__HM270001
30TM-Merge_methylation__HM4500010
31TM-Merge_miR__geneExp0010
32TM-Merge_miR__isoformExp0010
33TM-Merge_mRNA__geneExp__FPKM0010
34TM-Merge_mRNA__geneExpNormed__FPKM0010
35TM-Merge_SNV__mutect0010
36TM-mRNA_Preprocess1000
37NT-Clinical_Pick_Tier10010
38NT-Merge_clinical0010
39NT-Merge_CNV__snp60010
40NT-Merge_CNV__unfiltered__snp60010
41NT-Merge_methylation__HM270001
42NT-Merge_methylation__HM4500010
43NT-Merge_miR__geneExp0010
44NT-Merge_miR__isoformExp0010
45NT-Merge_mRNA__geneExp__FPKM0010
46NT-Merge_mRNA__geneExpNormed__FPKM0010
47NT-Merge_SNV__mutect0001
48NT-mRNA_Preprocess1000
49NB-Clinical_Pick_Tier10010
50NB-Merge_clinical0010
51NB-Merge_CNV__snp60010
52NB-Merge_CNV__unfiltered__snp60010
53NB-Merge_methylation__HM270001
54NB-Merge_methylation__HM4500001
55NB-Merge_miR__geneExp0001
56NB-Merge_miR__isoformExp0010
57NB-Merge_mRNA__geneExp__FPKM0001
58NB-Merge_mRNA__geneExpNormed__FPKM0001
59NB-Merge_SNV__mutect0001
60NB-mRNA_Preprocess1000
Total504312

CohortBCRClinicalCNmRNAmiRMAFMethylation
TCGA-ESCA185185184161184184185
TCGA-ESCA-NB1241241240000
TCGA-ESCA-NT6464641113016
TCGA-ESCA-TM1111111
TCGA-ESCA-TP185185184161184184185

This page generated on Sat Dec 9 11:28:14 2017