Broad GDAC stddata__2017_10_17 Run Status : TCGA-KIPAN

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	Pipeline Dataset	NotAvailable	Successful	Unsuccessful
1	Clinical_Pick_Tier1	0	1	0
2	Merge_clinical	0	1	0
3	Merge_CNV__snp6	0	1	0
4	Merge_CNV__unfiltered__snp6	0	1	0
5	Merge_methylation__HM27	0	1	0
6	Merge_methylation__HM450	0	1	0
7	Merge_miR__geneExp	0	1	0
8	Merge_miR__isoformExp	0	1	0
9	Merge_mRNA__geneExp__FPKM	0	1	0
10	Merge_mRNA__geneExpNormed__FPKM	0	1	0
11	Merge_SNV__mutect	0	1	0
12	mRNA_Preprocess	1	0	0
13	TP-Clinical_Pick_Tier1	0	1	0
14	TP-Merge_clinical	0	1	0
15	TP-Merge_CNV__snp6	0	1	0
16	TP-Merge_CNV__unfiltered__snp6	0	1	0
17	TP-Merge_methylation__HM27	0	1	0
18	TP-Merge_methylation__HM450	0	1	0
19	TP-Merge_miR__geneExp	0	1	0
20	TP-Merge_miR__isoformExp	0	1	0
21	TP-Merge_mRNA__geneExp__FPKM	0	1	0
22	TP-Merge_mRNA__geneExpNormed__FPKM	0	1	0
23	TP-Merge_SNV__mutect	0	1	0
24	TP-mRNA_Preprocess	1	0	0
25	TAP-Clinical_Pick_Tier1	0	1	0
26	TAP-Merge_clinical	0	1	0
27	TAP-Merge_CNV__snp6	0	1	0
28	TAP-Merge_CNV__unfiltered__snp6	0	1	0
29	TAP-Merge_methylation__HM27	0	0	1
30	TAP-Merge_methylation__HM450	0	1	0
31	TAP-Merge_miR__geneExp	0	1	0
32	TAP-Merge_miR__isoformExp	0	1	0
33	TAP-Merge_mRNA__geneExp__FPKM	0	1	0
34	TAP-Merge_mRNA__geneExpNormed__FPKM	0	1	0
35	TAP-Merge_SNV__mutect	0	1	0
36	TAP-mRNA_Preprocess	1	0	0
37	NT-Clinical_Pick_Tier1	0	1	0
38	NT-Merge_clinical	0	1	0
39	NT-Merge_CNV__snp6	0	1	0
40	NT-Merge_CNV__unfiltered__snp6	0	1	0
41	NT-Merge_methylation__HM27	0	1	0
42	NT-Merge_methylation__HM450	0	1	0
43	NT-Merge_miR__geneExp	0	1	0
44	NT-Merge_miR__isoformExp	0	1	0
45	NT-Merge_mRNA__geneExp__FPKM	0	1	0
46	NT-Merge_mRNA__geneExpNormed__FPKM	0	1	0
47	NT-Merge_SNV__mutect	0	0	1
48	NT-mRNA_Preprocess	1	0	0
49	NB-Clinical_Pick_Tier1	0	1	0
50	NB-Merge_clinical	0	1	0
51	NB-Merge_CNV__snp6	0	1	0
52	NB-Merge_CNV__unfiltered__snp6	0	1	0
53	NB-Merge_methylation__HM27	0	0	1
54	NB-Merge_methylation__HM450	0	0	1
55	NB-Merge_miR__geneExp	0	0	1
56	NB-Merge_miR__isoformExp	0	1	0
57	NB-Merge_mRNA__geneExp__FPKM	0	0	1
58	NB-Merge_mRNA__geneExpNormed__FPKM	0	0	1
59	NB-Merge_SNV__mutect	0	0	1
60	NB-mRNA_Preprocess	1	0	0
61	FFPE-Clinical_Pick_Tier1	0	0	1
62	FFPE-Merge_clinical	0	1	0
63	FFPE-Merge_CNV__snp6	0	1	0
64	FFPE-Merge_CNV__unfiltered__snp6	0	1	0
65	FFPE-Merge_methylation__HM27	0	0	1
66	FFPE-Merge_methylation__HM450	0	1	0
67	FFPE-Merge_miR__geneExp	0	1	0
68	FFPE-Merge_miR__isoformExp	0	1	0
69	FFPE-Merge_mRNA__geneExp__FPKM	0	1	0
70	FFPE-Merge_mRNA__geneExpNormed__FPKM	0	1	0
71	FFPE-Merge_SNV__mutect	0	1	0
72	FFPE-mRNA_Preprocess	1	0	0
	Total	6	56	10

Cohort	BCR	Clinical	CN	mRNA	miR	MAF	Methylation
TCGA-KIPAN	940	940	886	883	873	693	889
TCGA-KIPAN-FFPE	4	4	3	4	4	2	3
TCGA-KIPAN-NB	338	338	338	0	0	0	0
TCGA-KIPAN-NT	579	579	561	128	130	0	407
TCGA-KIPAN-TAP	2	2	1	2	2	2	2
TCGA-KIPAN-TP	940	940	886	883	873	693	889

This page generated on Sat Dec 9 11:28:17 2017

Broad GDAC Standard Data Status stddata__2017_10_17 Run for Tumor Type: TCGA-KIPAN

Broad GDAC Standard Data Status
stddata__2017_10_17 Run for Tumor Type: TCGA-KIPAN