Broad GDAC Standard Data Status
stddata__2017_10_17 Run for Tumor Type: TCGA-LIHC

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Pipeline DatasetNotAvailableInProcessSuccessfulUnsuccessful
1Clinical_Pick_Tier10010
2Merge_clinical0010
3Merge_CNV__snp60010
4Merge_CNV__unfiltered__snp60010
5Merge_methylation__HM270001
6Merge_methylation__HM4500010
7Merge_miR__geneExp0010
8Merge_miR__isoformExp0010
9Merge_mRNA__geneExp__FPKM0010
10Merge_mRNA__geneExpNormed__FPKM0010
11Merge_SNV__mutect0010
12mRNA_Preprocess1000
13TR-Clinical_Pick_Tier10001
14TR-Merge_clinical0010
15TR-Merge_CNV__snp60010
16TR-Merge_CNV__unfiltered__snp60010
17TR-Merge_methylation__HM270001
18TR-Merge_methylation__HM4500010
19TR-Merge_miR__geneExp0010
20TR-Merge_miR__isoformExp0010
21TR-Merge_mRNA__geneExp__FPKM0010
22TR-Merge_mRNA__geneExpNormed__FPKM0010
23TR-Merge_SNV__mutect0010
24TR-mRNA_Preprocess1000
25TP-Clinical_Pick_Tier10010
26TP-Merge_clinical0010
27TP-Merge_CNV__snp60010
28TP-Merge_CNV__unfiltered__snp60010
29TP-Merge_methylation__HM270001
30TP-Merge_methylation__HM4500010
31TP-Merge_miR__geneExp0010
32TP-Merge_miR__isoformExp0010
33TP-Merge_mRNA__geneExp__FPKM0010
34TP-Merge_mRNA__geneExpNormed__FPKM0010
35TP-Merge_SNV__mutect0010
36TP-mRNA_Preprocess1000
37NT-Clinical_Pick_Tier10010
38NT-Merge_clinical0010
39NT-Merge_CNV__snp60010
40NT-Merge_CNV__unfiltered__snp60010
41NT-Merge_methylation__HM270001
42NT-Merge_methylation__HM4500010
43NT-Merge_miR__geneExp0010
44NT-Merge_miR__isoformExp0010
45NT-Merge_mRNA__geneExp__FPKM0010
46NT-Merge_mRNA__geneExpNormed__FPKM0010
47NT-Merge_SNV__mutect0001
48NT-mRNA_Preprocess1000
49NB-Clinical_Pick_Tier10010
50NB-Merge_clinical0010
51NB-Merge_CNV__snp60010
52NB-Merge_CNV__unfiltered__snp60010
53NB-Merge_methylation__HM270001
54NB-Merge_methylation__HM4500001
55NB-Merge_miR__geneExp0001
56NB-Merge_miR__isoformExp0010
57NB-Merge_mRNA__geneExp__FPKM0001
58NB-Merge_mRNA__geneExpNormed__FPKM0001
59NB-Merge_SNV__mutect0001
60NB-mRNA_Preprocess1000
Total504312

CohortBCRClinicalCNmRNAmiRMAFMethylation
TCGA-LIHC377377375371372375377
TCGA-LIHC-NB3063063060000
TCGA-LIHC-NT8787835050050
TCGA-LIHC-TP377377375371372375377
TCGA-LIHC-TR2222222

This page generated on Sat Dec 9 11:28:20 2017