Broad GDAC Standard Data Status
stddata__2017_10_17 Run for Tumor Type: TCGA-LUSC
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Pipeline Dataset
NotAvailable
InProcess
Successful
Unsuccessful
1
Clinical_Pick_Tier1
0
0
1
0
2
Merge_clinical
0
0
1
0
3
Merge_CNV__snp6
0
0
1
0
4
Merge_CNV__unfiltered__snp6
0
0
1
0
5
Merge_methylation__HM27
0
0
1
0
6
Merge_methylation__HM450
0
0
1
0
7
Merge_miR__geneExp
0
0
1
0
8
Merge_miR__isoformExp
0
0
1
0
9
Merge_mRNA__geneExp__FPKM
0
0
1
0
10
Merge_mRNA__geneExpNormed__FPKM
0
0
1
0
11
Merge_SNV__mutect
0
0
1
0
12
mRNA_Preprocess
1
0
0
0
13
TP-Clinical_Pick_Tier1
0
0
1
0
14
TP-Merge_clinical
0
0
1
0
15
TP-Merge_CNV__snp6
0
0
1
0
16
TP-Merge_CNV__unfiltered__snp6
0
0
1
0
17
TP-Merge_methylation__HM27
0
0
1
0
18
TP-Merge_methylation__HM450
0
0
1
0
19
TP-Merge_miR__geneExp
0
0
1
0
20
TP-Merge_miR__isoformExp
0
0
1
0
21
TP-Merge_mRNA__geneExp__FPKM
0
0
1
0
22
TP-Merge_mRNA__geneExpNormed__FPKM
0
0
1
0
23
TP-Merge_SNV__mutect
0
0
1
0
24
TP-mRNA_Preprocess
1
0
0
0
25
NT-Clinical_Pick_Tier1
0
0
1
0
26
NT-Merge_clinical
0
0
1
0
27
NT-Merge_CNV__snp6
0
0
1
0
28
NT-Merge_CNV__unfiltered__snp6
0
0
1
0
29
NT-Merge_methylation__HM27
0
0
1
0
30
NT-Merge_methylation__HM450
0
0
1
0
31
NT-Merge_miR__geneExp
0
0
1
0
32
NT-Merge_miR__isoformExp
0
0
1
0
33
NT-Merge_mRNA__geneExp__FPKM
0
0
1
0
34
NT-Merge_mRNA__geneExpNormed__FPKM
0
0
1
0
35
NT-Merge_SNV__mutect
0
0
0
1
36
NT-mRNA_Preprocess
1
0
0
0
37
NB-Clinical_Pick_Tier1
0
0
1
0
38
NB-Merge_clinical
0
0
1
0
39
NB-Merge_CNV__snp6
0
0
1
0
40
NB-Merge_CNV__unfiltered__snp6
0
0
1
0
41
NB-Merge_methylation__HM27
0
0
0
1
42
NB-Merge_methylation__HM450
0
0
0
1
43
NB-Merge_miR__geneExp
0
0
0
1
44
NB-Merge_miR__isoformExp
0
0
1
0
45
NB-Merge_mRNA__geneExp__FPKM
0
0
0
1
46
NB-Merge_mRNA__geneExpNormed__FPKM
0
0
0
1
47
NB-Merge_SNV__mutect
0
0
0
1
48
NB-mRNA_Preprocess
1
0
0
0
49
FFPE-Clinical_Pick_Tier1
0
0
1
0
50
FFPE-Merge_clinical
0
0
1
0
51
FFPE-Merge_CNV__snp6
0
0
1
0
52
FFPE-Merge_CNV__unfiltered__snp6
0
0
1
0
53
FFPE-Merge_methylation__HM27
0
0
0
1
54
FFPE-Merge_methylation__HM450
0
0
0
1
55
FFPE-Merge_miR__geneExp
0
0
0
1
56
FFPE-Merge_miR__isoformExp
0
0
1
0
57
FFPE-Merge_mRNA__geneExp__FPKM
0
0
0
1
58
FFPE-Merge_mRNA__geneExpNormed__FPKM
0
0
0
1
59
FFPE-Merge_SNV__mutect
0
0
1
0
60
FFPE-mRNA_Preprocess
1
0
0
0
Total
5
0
43
12
Cohort
BCR
Clinical
CN
mRNA
miR
MAF
Methylation
TCGA-LUSC
503
503
503
501
478
497
502
TCGA-LUSC-NB
295
295
296
0
0
0
0
TCGA-LUSC-NT
243
242
239
49
45
0
69
TCGA-LUSC-TP
503
503
503
501
478
497
502
This page generated on Sat Dec 9 11:28:21 2017