Broad GDAC Standard Data Status
stddata__2017_10_17 Run for Tumor Type: TCGA-PCPG
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Pipeline Dataset
NotAvailable
InProcess
Successful
Unsuccessful
1
Clinical_Pick_Tier1
0
0
1
0
2
Merge_clinical
0
0
1
0
3
Merge_CNV__snp6
0
0
1
0
4
Merge_CNV__unfiltered__snp6
0
0
1
0
5
Merge_methylation__HM27
0
0
0
1
6
Merge_methylation__HM450
0
0
1
0
7
Merge_miR__geneExp
0
0
1
0
8
Merge_miR__isoformExp
0
0
1
0
9
Merge_mRNA__geneExp__FPKM
0
0
1
0
10
Merge_mRNA__geneExpNormed__FPKM
0
0
1
0
11
Merge_SNV__mutect
0
0
1
0
12
mRNA_Preprocess
1
0
0
0
13
TP-Clinical_Pick_Tier1
0
0
1
0
14
TP-Merge_clinical
0
0
1
0
15
TP-Merge_CNV__snp6
0
0
1
0
16
TP-Merge_CNV__unfiltered__snp6
0
0
1
0
17
TP-Merge_methylation__HM27
0
0
0
1
18
TP-Merge_methylation__HM450
0
0
1
0
19
TP-Merge_miR__geneExp
0
0
1
0
20
TP-Merge_miR__isoformExp
0
0
1
0
21
TP-Merge_mRNA__geneExp__FPKM
0
0
1
0
22
TP-Merge_mRNA__geneExpNormed__FPKM
0
0
1
0
23
TP-Merge_SNV__mutect
0
0
1
0
24
TP-mRNA_Preprocess
1
0
0
0
25
TM-Clinical_Pick_Tier1
0
0
1
0
26
TM-Merge_clinical
0
0
1
0
27
TM-Merge_CNV__snp6
0
0
1
0
28
TM-Merge_CNV__unfiltered__snp6
0
0
1
0
29
TM-Merge_methylation__HM27
0
0
0
1
30
TM-Merge_methylation__HM450
0
0
1
0
31
TM-Merge_miR__geneExp
0
0
1
0
32
TM-Merge_miR__isoformExp
0
0
1
0
33
TM-Merge_mRNA__geneExp__FPKM
0
0
1
0
34
TM-Merge_mRNA__geneExpNormed__FPKM
0
0
1
0
35
TM-Merge_SNV__mutect
0
0
1
0
36
TM-mRNA_Preprocess
1
0
0
0
37
TAP-Clinical_Pick_Tier1
0
0
1
0
38
TAP-Merge_clinical
0
0
1
0
39
TAP-Merge_CNV__snp6
0
0
1
0
40
TAP-Merge_CNV__unfiltered__snp6
0
0
1
0
41
TAP-Merge_methylation__HM27
0
0
0
1
42
TAP-Merge_methylation__HM450
0
0
1
0
43
TAP-Merge_miR__geneExp
0
0
1
0
44
TAP-Merge_miR__isoformExp
0
0
1
0
45
TAP-Merge_mRNA__geneExp__FPKM
0
0
1
0
46
TAP-Merge_mRNA__geneExpNormed__FPKM
0
0
1
0
47
TAP-Merge_SNV__mutect
0
0
1
0
48
TAP-mRNA_Preprocess
1
0
0
0
49
NT-Clinical_Pick_Tier1
0
0
1
0
50
NT-Merge_clinical
0
0
1
0
51
NT-Merge_CNV__snp6
0
0
1
0
52
NT-Merge_CNV__unfiltered__snp6
0
0
1
0
53
NT-Merge_methylation__HM27
0
0
0
1
54
NT-Merge_methylation__HM450
0
0
1
0
55
NT-Merge_miR__geneExp
0
0
1
0
56
NT-Merge_miR__isoformExp
0
0
1
0
57
NT-Merge_mRNA__geneExp__FPKM
0
0
1
0
58
NT-Merge_mRNA__geneExpNormed__FPKM
0
0
1
0
59
NT-Merge_SNV__mutect
0
0
0
1
60
NT-mRNA_Preprocess
1
0
0
0
61
NB-Clinical_Pick_Tier1
0
0
1
0
62
NB-Merge_clinical
0
0
1
0
63
NB-Merge_CNV__snp6
0
0
1
0
64
NB-Merge_CNV__unfiltered__snp6
0
0
1
0
65
NB-Merge_methylation__HM27
0
0
0
1
66
NB-Merge_methylation__HM450
0
0
0
1
67
NB-Merge_miR__geneExp
0
0
0
1
68
NB-Merge_miR__isoformExp
0
0
1
0
69
NB-Merge_mRNA__geneExp__FPKM
0
0
0
1
70
NB-Merge_mRNA__geneExpNormed__FPKM
0
0
0
1
71
NB-Merge_SNV__mutect
0
0
0
1
72
NB-mRNA_Preprocess
1
0
0
0
Total
6
0
54
12
Cohort
BCR
Clinical
CN
mRNA
miR
MAF
Methylation
TCGA-PCPG
179
179
178
178
179
179
179
TCGA-PCPG-NB
175
175
175
0
0
0
0
TCGA-PCPG-NT
5
5
5
3
3
0
3
TCGA-PCPG-TAP
3
3
3
3
3
3
3
TCGA-PCPG-TM
2
2
2
2
2
2
2
TCGA-PCPG-TP
179
179
178
178
179
179
179
This page generated on Sat Dec 9 11:28:24 2017