Broad GDAC Standard Data Status
stddata__2017_10_17 Run for Tumor Type: TCGA-READ
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Pipeline Dataset
NotAvailable
InProcess
Successful
Unsuccessful
1
Clinical_Pick_Tier1
0
0
1
0
2
Merge_clinical
0
0
1
0
3
Merge_CNV__snp6
0
0
1
0
4
Merge_CNV__unfiltered__snp6
0
0
1
0
5
Merge_methylation__HM27
0
0
1
0
6
Merge_methylation__HM450
0
0
1
0
7
Merge_miR__geneExp
0
0
1
0
8
Merge_miR__isoformExp
0
0
1
0
9
Merge_mRNA__geneExp__FPKM
0
0
1
0
10
Merge_mRNA__geneExpNormed__FPKM
0
0
1
0
11
Merge_SNV__mutect
0
0
1
0
12
mRNA_Preprocess
1
0
0
0
13
TR-Clinical_Pick_Tier1
0
0
0
1
14
TR-Merge_clinical
0
0
1
0
15
TR-Merge_CNV__snp6
0
0
1
0
16
TR-Merge_CNV__unfiltered__snp6
0
0
1
0
17
TR-Merge_methylation__HM27
0
0
0
1
18
TR-Merge_methylation__HM450
0
0
1
0
19
TR-Merge_miR__geneExp
0
0
1
0
20
TR-Merge_miR__isoformExp
0
0
1
0
21
TR-Merge_mRNA__geneExp__FPKM
0
0
1
0
22
TR-Merge_mRNA__geneExpNormed__FPKM
0
0
1
0
23
TR-Merge_SNV__mutect
0
0
1
0
24
TR-mRNA_Preprocess
1
0
0
0
25
TP-Clinical_Pick_Tier1
0
0
1
0
26
TP-Merge_clinical
0
0
1
0
27
TP-Merge_CNV__snp6
0
0
1
0
28
TP-Merge_CNV__unfiltered__snp6
0
0
1
0
29
TP-Merge_methylation__HM27
0
0
1
0
30
TP-Merge_methylation__HM450
0
0
1
0
31
TP-Merge_miR__geneExp
0
0
1
0
32
TP-Merge_miR__isoformExp
0
0
1
0
33
TP-Merge_mRNA__geneExp__FPKM
0
0
1
0
34
TP-Merge_mRNA__geneExpNormed__FPKM
0
0
1
0
35
TP-Merge_SNV__mutect
0
0
1
0
36
TP-mRNA_Preprocess
1
0
0
0
37
NT-Clinical_Pick_Tier1
0
0
1
0
38
NT-Merge_clinical
0
0
1
0
39
NT-Merge_CNV__snp6
0
0
1
0
40
NT-Merge_CNV__unfiltered__snp6
0
0
1
0
41
NT-Merge_methylation__HM27
0
0
1
0
42
NT-Merge_methylation__HM450
0
0
1
0
43
NT-Merge_miR__geneExp
0
0
1
0
44
NT-Merge_miR__isoformExp
0
0
1
0
45
NT-Merge_mRNA__geneExp__FPKM
0
0
1
0
46
NT-Merge_mRNA__geneExpNormed__FPKM
0
0
1
0
47
NT-Merge_SNV__mutect
0
0
0
1
48
NT-mRNA_Preprocess
1
0
0
0
49
NB-Clinical_Pick_Tier1
0
0
1
0
50
NB-Merge_clinical
0
0
1
0
51
NB-Merge_CNV__snp6
0
0
1
0
52
NB-Merge_CNV__unfiltered__snp6
0
0
1
0
53
NB-Merge_methylation__HM27
0
0
0
1
54
NB-Merge_methylation__HM450
0
0
0
1
55
NB-Merge_miR__geneExp
0
0
0
1
56
NB-Merge_miR__isoformExp
0
0
1
0
57
NB-Merge_mRNA__geneExp__FPKM
0
0
0
1
58
NB-Merge_mRNA__geneExpNormed__FPKM
0
0
0
1
59
NB-Merge_SNV__mutect
0
0
0
1
60
NB-mRNA_Preprocess
1
0
0
0
Total
5
0
46
9
Cohort
BCR
Clinical
CN
mRNA
miR
MAF
Methylation
TCGA-READ
172
170
164
166
161
157
165
TCGA-READ-NB
132
132
132
0
0
0
0
TCGA-READ-NT
17
17
17
10
3
0
12
TCGA-READ-TP
172
170
164
166
161
157
165
TCGA-READ-TR
1
1
1
1
1
1
1
This page generated on Sat Dec 9 11:28:26 2017