Broad GDAC Standard Data Status
stddata__2017_10_17 Run for Tumor Type: TCGA-SARC
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Pipeline Dataset
NotAvailable
InProcess
Successful
Unsuccessful
1
Clinical_Pick_Tier1
0
0
1
0
2
Merge_clinical
0
0
1
0
3
Merge_CNV__snp6
0
0
1
0
4
Merge_CNV__unfiltered__snp6
0
0
1
0
5
Merge_methylation__HM27
0
0
0
1
6
Merge_methylation__HM450
0
0
1
0
7
Merge_miR__geneExp
0
0
1
0
8
Merge_miR__isoformExp
0
0
1
0
9
Merge_mRNA__geneExp__FPKM
0
0
1
0
10
Merge_mRNA__geneExpNormed__FPKM
0
0
1
0
11
Merge_SNV__mutect
0
0
1
0
12
mRNA_Preprocess
1
0
0
0
13
TR-Clinical_Pick_Tier1
0
0
1
0
14
TR-Merge_clinical
0
0
1
0
15
TR-Merge_CNV__snp6
0
0
1
0
16
TR-Merge_CNV__unfiltered__snp6
0
0
1
0
17
TR-Merge_methylation__HM27
0
0
0
1
18
TR-Merge_methylation__HM450
0
0
1
0
19
TR-Merge_miR__geneExp
0
0
1
0
20
TR-Merge_miR__isoformExp
0
0
1
0
21
TR-Merge_mRNA__geneExp__FPKM
0
0
1
0
22
TR-Merge_mRNA__geneExpNormed__FPKM
0
0
1
0
23
TR-Merge_SNV__mutect
0
0
1
0
24
TR-mRNA_Preprocess
1
0
0
0
25
TP-Clinical_Pick_Tier1
0
0
1
0
26
TP-Merge_clinical
0
0
1
0
27
TP-Merge_CNV__snp6
0
0
1
0
28
TP-Merge_CNV__unfiltered__snp6
0
0
1
0
29
TP-Merge_methylation__HM27
0
0
0
1
30
TP-Merge_methylation__HM450
0
0
1
0
31
TP-Merge_miR__geneExp
0
0
1
0
32
TP-Merge_miR__isoformExp
0
0
1
0
33
TP-Merge_mRNA__geneExp__FPKM
0
0
1
0
34
TP-Merge_mRNA__geneExpNormed__FPKM
0
0
1
0
35
TP-Merge_SNV__mutect
0
0
1
0
36
TP-mRNA_Preprocess
1
0
0
0
37
TM-Clinical_Pick_Tier1
0
0
0
1
38
TM-Merge_clinical
0
0
1
0
39
TM-Merge_CNV__snp6
0
0
1
0
40
TM-Merge_CNV__unfiltered__snp6
0
0
1
0
41
TM-Merge_methylation__HM27
0
0
0
1
42
TM-Merge_methylation__HM450
0
0
1
0
43
TM-Merge_miR__geneExp
0
0
1
0
44
TM-Merge_miR__isoformExp
0
0
1
0
45
TM-Merge_mRNA__geneExp__FPKM
0
0
1
0
46
TM-Merge_mRNA__geneExpNormed__FPKM
0
0
1
0
47
TM-Merge_SNV__mutect
0
0
1
0
48
TM-mRNA_Preprocess
1
0
0
0
49
NT-Clinical_Pick_Tier1
0
0
1
0
50
NT-Merge_clinical
0
0
1
0
51
NT-Merge_CNV__snp6
0
0
1
0
52
NT-Merge_CNV__unfiltered__snp6
0
0
1
0
53
NT-Merge_methylation__HM27
0
0
0
1
54
NT-Merge_methylation__HM450
0
0
1
0
55
NT-Merge_miR__geneExp
0
0
0
1
56
NT-Merge_miR__isoformExp
0
0
1
0
57
NT-Merge_mRNA__geneExp__FPKM
0
0
1
0
58
NT-Merge_mRNA__geneExpNormed__FPKM
0
0
1
0
59
NT-Merge_SNV__mutect
0
0
0
1
60
NT-mRNA_Preprocess
1
0
0
0
61
NB-Clinical_Pick_Tier1
0
0
1
0
62
NB-Merge_clinical
0
0
1
0
63
NB-Merge_CNV__snp6
0
0
1
0
64
NB-Merge_CNV__unfiltered__snp6
0
0
1
0
65
NB-Merge_methylation__HM27
0
0
0
1
66
NB-Merge_methylation__HM450
0
0
0
1
67
NB-Merge_miR__geneExp
0
0
0
1
68
NB-Merge_miR__isoformExp
0
0
1
0
69
NB-Merge_mRNA__geneExp__FPKM
0
0
0
1
70
NB-Merge_mRNA__geneExpNormed__FPKM
0
0
0
1
71
NB-Merge_SNV__mutect
0
0
0
1
72
NB-mRNA_Preprocess
1
0
0
0
Total
6
0
52
14
Cohort
BCR
Clinical
CN
mRNA
miR
MAF
Methylation
TCGA-SARC
261
261
260
259
259
255
261
TCGA-SARC-NB
233
233
233
0
0
0
0
TCGA-SARC-NT
22
22
22
2
0
0
4
TCGA-SARC-TM
1
1
1
1
1
1
1
TCGA-SARC-TP
261
261
260
259
259
255
261
TCGA-SARC-TR
3
3
3
3
3
3
3
This page generated on Sat Dec 9 11:28:26 2017