Broad GDAC stddata__2017_10_17 Run Status : TCGA-SKCM

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	Pipeline Dataset	NotAvailable	Successful	Unsuccessful
1	Clinical_Pick_Tier1	0	1	0
2	Merge_clinical	0	1	0
3	Merge_CNV__snp6	0	1	0
4	Merge_CNV__unfiltered__snp6	0	1	0
5	Merge_methylation__HM27	0	0	1
6	Merge_methylation__HM450	0	1	0
7	Merge_miR__geneExp	0	1	0
8	Merge_miR__isoformExp	0	1	0
9	Merge_mRNA__geneExp__FPKM	0	1	0
10	Merge_mRNA__geneExpNormed__FPKM	0	1	0
11	Merge_SNV__mutect	0	1	0
12	mRNA_Preprocess	1	0	0
13	TP-Clinical_Pick_Tier1	0	1	0
14	TP-Merge_clinical	0	1	0
15	TP-Merge_CNV__snp6	0	1	0
16	TP-Merge_CNV__unfiltered__snp6	0	1	0
17	TP-Merge_methylation__HM27	0	0	1
18	TP-Merge_methylation__HM450	0	1	0
19	TP-Merge_miR__geneExp	0	1	0
20	TP-Merge_miR__isoformExp	0	1	0
21	TP-Merge_mRNA__geneExp__FPKM	0	1	0
22	TP-Merge_mRNA__geneExpNormed__FPKM	0	1	0
23	TP-Merge_SNV__mutect	0	1	0
24	TP-mRNA_Preprocess	1	0	0
25	TM-Clinical_Pick_Tier1	0	1	0
26	TM-Merge_clinical	0	1	0
27	TM-Merge_CNV__snp6	0	1	0
28	TM-Merge_CNV__unfiltered__snp6	0	1	0
29	TM-Merge_methylation__HM27	0	0	1
30	TM-Merge_methylation__HM450	0	1	0
31	TM-Merge_miR__geneExp	0	1	0
32	TM-Merge_miR__isoformExp	0	1	0
33	TM-Merge_mRNA__geneExp__FPKM	0	1	0
34	TM-Merge_mRNA__geneExpNormed__FPKM	0	1	0
35	TM-Merge_SNV__mutect	0	1	0
36	TM-mRNA_Preprocess	1	0	0
37	TAM-Clinical_Pick_Tier1	0	0	1
38	TAM-Merge_clinical	0	1	0
39	TAM-Merge_CNV__snp6	0	1	0
40	TAM-Merge_CNV__unfiltered__snp6	0	1	0
41	TAM-Merge_methylation__HM27	0	0	1
42	TAM-Merge_methylation__HM450	0	1	0
43	TAM-Merge_miR__geneExp	0	1	0
44	TAM-Merge_miR__isoformExp	0	1	0
45	TAM-Merge_mRNA__geneExp__FPKM	0	1	0
46	TAM-Merge_mRNA__geneExpNormed__FPKM	0	1	0
47	TAM-Merge_SNV__mutect	0	0	1
48	TAM-mRNA_Preprocess	1	0	0
49	NT-Clinical_Pick_Tier1	0	0	1
50	NT-Merge_clinical	0	1	0
51	NT-Merge_CNV__snp6	0	1	0
52	NT-Merge_CNV__unfiltered__snp6	0	1	0
53	NT-Merge_methylation__HM27	0	0	1
54	NT-Merge_methylation__HM450	0	1	0
55	NT-Merge_miR__geneExp	0	1	0
56	NT-Merge_miR__isoformExp	0	1	0
57	NT-Merge_mRNA__geneExp__FPKM	0	1	0
58	NT-Merge_mRNA__geneExpNormed__FPKM	0	1	0
59	NT-Merge_SNV__mutect	0	0	1
60	NT-mRNA_Preprocess	1	0	0
61	NB-Clinical_Pick_Tier1	0	1	0
62	NB-Merge_clinical	0	1	0
63	NB-Merge_CNV__snp6	0	1	0
64	NB-Merge_CNV__unfiltered__snp6	0	1	0
65	NB-Merge_methylation__HM27	0	0	1
66	NB-Merge_methylation__HM450	0	0	1
67	NB-Merge_miR__geneExp	0	0	1
68	NB-Merge_miR__isoformExp	0	1	0
69	NB-Merge_mRNA__geneExp__FPKM	0	0	1
70	NB-Merge_mRNA__geneExpNormed__FPKM	0	0	1
71	NB-Merge_SNV__mutect	0	0	1
72	NB-mRNA_Preprocess	1	0	0
	Total	6	51	15

Cohort	BCR	Clinical	CN	mRNA	miR	MAF	Methylation
TCGA-SKCM	470	470	368	367	352	368	368
TCGA-SKCM-NB	465	465	465	0	0	0	0
TCGA-SKCM-NT	3	3	2	1	2	0	2
TCGA-SKCM-TAM	1	1	0	1	1	0	1
TCGA-SKCM-TM	470	470	368	367	352	368	368
TCGA-SKCM-TP	104	104	104	103	97	104	104

This page generated on Sat Dec 9 11:28:27 2017

Broad GDAC Standard Data Status stddata__2017_10_17 Run for Tumor Type: TCGA-SKCM

Broad GDAC Standard Data Status
stddata__2017_10_17 Run for Tumor Type: TCGA-SKCM