(primary solid tumor cohort)
This pipeline computes the correlation between significant copy number variation (cnv) genes and molecular subtypes.
Testing the association between copy number variation of 68 peak regions and 10 molecular subtypes across 413 patients, 153 significant findings detected with Q value < 0.25.
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Amp Peak 1(2q33.1) cnvs correlated to 'CN_CNMF'.
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Amp Peak 2(5p13.2) cnvs correlated to 'CN_CNMF'.
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Amp Peak 4(6p21.1) cnvs correlated to 'CN_CNMF'.
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Amp Peak 5(8p11.23) cnvs correlated to 'CN_CNMF'.
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Amp Peak 6(8p11.21) cnvs correlated to 'CN_CNMF'.
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Amp Peak 7(8q12.1) cnvs correlated to 'CN_CNMF'.
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Amp Peak 8(8q24.21) cnvs correlated to 'CN_CNMF'.
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Amp Peak 9(11p15.5) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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Amp Peak 11(13q12.13) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Amp Peak 12(13q22.1) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Amp Peak 13(16p11.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'MRNASEQ_CNMF'.
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Amp Peak 14(16q12.1) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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Amp Peak 15(17q12) cnvs correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
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Amp Peak 16(17q24.1) cnvs correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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Amp Peak 17(19p13.2) cnvs correlated to 'CN_CNMF'.
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Amp Peak 19(20p12.3) cnvs correlated to 'CN_CNMF'.
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Amp Peak 20(20p11.23) cnvs correlated to 'CN_CNMF'.
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Amp Peak 21(20p11.21) cnvs correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Amp Peak 22(20q11.21) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Amp Peak 23(20q12) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Amp Peak 24(20q13.32) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Del Peak 1(1p36.11) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', and 'MRNASEQ_CNMF'.
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Del Peak 2(1p33) cnvs correlated to 'CN_CNMF'.
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Del Peak 3(1p13.1) cnvs correlated to 'CN_CNMF'.
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Del Peak 4(1q43) cnvs correlated to 'CN_CNMF'.
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Del Peak 6(3p26.1) cnvs correlated to 'CN_CNMF'.
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Del Peak 9(4p16.2) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Del Peak 10(4q22.1) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Del Peak 11(4q35.1) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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Del Peak 12(5q11.2) cnvs correlated to 'CN_CNMF'.
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Del Peak 13(5q21.3) cnvs correlated to 'CN_CNMF'.
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Del Peak 14(5q23.1) cnvs correlated to 'CN_CNMF'.
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Del Peak 15(6p25.3) cnvs correlated to 'CN_CNMF'.
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Del Peak 18(8p23.3) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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Del Peak 19(8p22) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
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Del Peak 20(8p11.22) cnvs correlated to 'CN_CNMF'.
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Del Peak 21(8p11.21) cnvs correlated to 'CN_CNMF'.
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Del Peak 22(9p21.3) cnvs correlated to 'CN_CNMF'.
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Del Peak 23(10p15.3) cnvs correlated to 'CN_CNMF'.
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Del Peak 24(10q21.1) cnvs correlated to 'CN_CNMF'.
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Del Peak 25(10q23.31) cnvs correlated to 'CN_CNMF'.
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Del Peak 26(10q25.2) cnvs correlated to 'CN_CNMF'.
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Del Peak 27(12p13.2) cnvs correlated to 'CN_CNMF'.
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Del Peak 28(13q14.13) cnvs correlated to 'CN_CNMF'.
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Del Peak 29(14q32.11) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'MRNASEQ_CNMF'.
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Del Peak 30(15q11.2) cnvs correlated to 'MRNA_CNMF', 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Del Peak 31(15q21.1) cnvs correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Del Peak 32(15q22.33) cnvs correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Del Peak 35(17p12) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Del Peak 37(18p11.31) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Del Peak 38(18q12.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Del Peak 39(18q21.2) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Del Peak 40(18q22.1) cnvs correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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Del Peak 42(20p12.1) cnvs correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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Del Peak 43(21q11.2) cnvs correlated to 'CN_CNMF'.
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Del Peak 44(22q13.32) cnvs correlated to 'MRNA_CNMF' and 'CN_CNMF'.
Molecular subtypes |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
Amp Peak 22(20q11 21) | 296 (72%) | 117 |
1.07e-10 (6.69e-08) |
2.86e-11 (1.8e-08) |
1.54e-43 (1.04e-40) |
2.19e-09 (1.34e-06) |
0.0393 (1.00) |
0.000232 (0.126) |
1.47e-14 (9.62e-12) |
3.85e-12 (2.47e-09) |
0.443 (1.00) |
1 (1.00) |
Amp Peak 23(20q12) | 297 (72%) | 116 |
9.28e-12 (5.91e-09) |
1.82e-11 (1.15e-08) |
6.28e-43 (4.24e-40) |
1.58e-08 (9.58e-06) |
0.00814 (1.00) |
0.000167 (0.0912) |
5.48e-14 (3.59e-11) |
1.34e-11 (8.53e-09) |
0.406 (1.00) |
0.948 (1.00) |
Amp Peak 24(20q13 32) | 300 (73%) | 113 |
2.87e-10 (1.79e-07) |
6.27e-12 (4e-09) |
3.18e-43 (2.15e-40) |
1.58e-08 (9.58e-06) |
0.011 (1.00) |
0.000119 (0.0654) |
5.48e-14 (3.59e-11) |
1.34e-11 (8.53e-09) |
0.414 (1.00) |
0.96 (1.00) |
Del Peak 35(17p12) | 229 (55%) | 184 |
6.12e-08 (3.66e-05) |
1.6e-06 (0.000933) |
2.81e-35 (1.89e-32) |
1.8e-09 (1.11e-06) |
0.0321 (1.00) |
1.9e-06 (0.00111) |
1.06e-10 (6.61e-08) |
3.2e-08 (1.92e-05) |
0.363 (1.00) |
0.729 (1.00) |
Del Peak 37(18p11 31) | 220 (53%) | 193 |
1.51e-12 (9.71e-10) |
3.65e-09 (2.23e-06) |
1.93e-42 (1.3e-39) |
3.11e-13 (2.02e-10) |
0.0369 (1.00) |
7.24e-05 (0.0404) |
3.11e-17 (2.06e-14) |
8.19e-10 (5.07e-07) |
0.48 (1.00) |
0.841 (1.00) |
Del Peak 38(18q12 2) | 247 (60%) | 166 |
8.37e-11 (5.25e-08) |
1.08e-09 (6.69e-07) |
1.87e-45 (1.27e-42) |
8.98e-16 (5.9e-13) |
0.0918 (1.00) |
6.99e-05 (0.0391) |
7.66e-16 (5.04e-13) |
1.07e-08 (6.52e-06) |
0.449 (1.00) |
0.865 (1.00) |
Del Peak 39(18q21 2) | 260 (63%) | 153 |
3.06e-10 (1.91e-07) |
6.85e-10 (4.25e-07) |
1.51e-45 (1.03e-42) |
3.29e-12 (2.11e-09) |
0.0246 (1.00) |
4.51e-05 (0.0256) |
8.74e-13 (5.66e-10) |
7.14e-07 (0.000421) |
0.0517 (1.00) |
0.901 (1.00) |
Del Peak 40(18q22 1) | 260 (63%) | 153 |
6.92e-11 (4.35e-08) |
3.65e-09 (2.23e-06) |
1.58e-47 (1.07e-44) |
2.02e-12 (1.3e-09) |
0.0397 (1.00) |
3.16e-05 (0.018) |
4.05e-12 (2.59e-09) |
2.76e-07 (0.000164) |
0.0746 (1.00) |
0.912 (1.00) |
Amp Peak 11(13q12 13) | 250 (61%) | 163 |
7.21e-08 (4.31e-05) |
5.27e-06 (0.00306) |
5.04e-36 (3.39e-33) |
0.00027 (0.145) |
0.238 (1.00) |
0.00673 (1.00) |
1.27e-06 (0.000745) |
0.000196 (0.106) |
0.459 (1.00) |
0.798 (1.00) |
Amp Peak 12(13q22 1) | 254 (62%) | 159 |
6.34e-05 (0.0356) |
5.43e-05 (0.0306) |
7.2e-33 (4.83e-30) |
0.00051 (0.269) |
0.345 (1.00) |
0.00891 (1.00) |
1.15e-06 (0.000674) |
7.67e-05 (0.0427) |
0.272 (1.00) |
0.977 (1.00) |
Amp Peak 13(16p11 2) | 116 (28%) | 297 |
0.000447 (0.236) |
0.000375 (0.2) |
8.55e-19 (5.67e-16) |
0.0212 (1.00) |
0.0977 (1.00) |
0.0013 (0.646) |
0.000429 (0.228) |
0.00838 (1.00) |
0.771 (1.00) |
0.809 (1.00) |
Amp Peak 21(20p11 21) | 230 (56%) | 183 |
0.000692 (0.357) |
4.27e-05 (0.0242) |
4e-23 (2.67e-20) |
0.00113 (0.568) |
0.244 (1.00) |
0.0466 (1.00) |
2.41e-07 (0.000143) |
1.39e-06 (0.000812) |
0.174 (1.00) |
0.509 (1.00) |
Del Peak 11(4q35 1) | 137 (33%) | 276 |
0.000128 (0.0699) |
0.00928 (1.00) |
1.05e-13 (6.82e-11) |
7.69e-05 (0.0427) |
0.242 (1.00) |
0.182 (1.00) |
0.000239 (0.129) |
0.000527 (0.276) |
0.416 (1.00) |
0.235 (1.00) |
Del Peak 19(8p22) | 185 (45%) | 228 |
0.00115 (0.576) |
0.000958 (0.485) |
2.41e-30 (1.61e-27) |
3.46e-07 (0.000205) |
0.133 (1.00) |
1.28e-05 (0.00739) |
2.16e-05 (0.0124) |
0.000656 (0.34) |
0.115 (1.00) |
0.832 (1.00) |
Del Peak 29(14q32 11) | 133 (32%) | 280 |
2.12e-05 (0.0122) |
0.00011 (0.0608) |
1.61e-20 (1.07e-17) |
0.000707 (0.364) |
0.000608 (0.317) |
0.0012 (0.597) |
7.3e-05 (0.0408) |
0.00084 (0.429) |
0.319 (1.00) |
0.0612 (1.00) |
Del Peak 30(15q11 2) | 160 (39%) | 253 |
0.000422 (0.225) |
0.00683 (1.00) |
1.2e-21 (7.98e-19) |
0.00432 (1.00) |
0.0367 (1.00) |
0.0598 (1.00) |
2.09e-06 (0.00122) |
0.000117 (0.0645) |
0.877 (1.00) |
0.893 (1.00) |
Del Peak 32(15q22 33) | 145 (35%) | 268 |
0.000758 (0.389) |
0.00327 (1.00) |
2.48e-21 (1.65e-18) |
0.000435 (0.23) |
0.152 (1.00) |
0.033 (1.00) |
3.07e-08 (1.84e-05) |
7.55e-06 (0.00436) |
0.949 (1.00) |
0.365 (1.00) |
Amp Peak 9(11p15 5) | 86 (21%) | 327 |
1.38e-05 (0.00793) |
0.000201 (0.109) |
1.54e-09 (9.48e-07) |
0.000612 (0.318) |
0.0836 (1.00) |
0.00109 (0.549) |
0.00193 (0.951) |
0.00845 (1.00) |
0.117 (1.00) |
0.201 (1.00) |
Amp Peak 14(16q12 1) | 102 (25%) | 311 |
3.02e-05 (0.0173) |
0.000126 (0.0692) |
1.67e-20 (1.11e-17) |
0.0511 (1.00) |
0.411 (1.00) |
0.00815 (1.00) |
0.000642 (0.333) |
0.00254 (1.00) |
0.902 (1.00) |
0.93 (1.00) |
Amp Peak 15(17q12) | 101 (24%) | 312 |
0.0989 (1.00) |
0.0852 (1.00) |
7.53e-07 (0.000443) |
0.0164 (1.00) |
0.71 (1.00) |
0.000254 (0.137) |
4.59e-05 (0.0259) |
0.0142 (1.00) |
0.0121 (1.00) |
0.986 (1.00) |
Del Peak 1(1p36 11) | 150 (36%) | 263 |
6.81e-05 (0.0382) |
0.00576 (1.00) |
6.32e-17 (4.17e-14) |
0.000792 (0.406) |
0.0281 (1.00) |
0.002 (0.981) |
0.000347 (0.186) |
0.0012 (0.599) |
0.409 (1.00) |
0.0624 (1.00) |
Del Peak 9(4p16 2) | 121 (29%) | 292 |
0.00194 (0.955) |
0.0107 (1.00) |
1.16e-12 (7.47e-10) |
0.011 (1.00) |
0.182 (1.00) |
0.064 (1.00) |
0.000237 (0.128) |
0.000107 (0.059) |
0.376 (1.00) |
0.206 (1.00) |
Del Peak 10(4q22 1) | 126 (31%) | 287 |
0.000585 (0.306) |
0.00864 (1.00) |
8.5e-12 (5.42e-09) |
0.00207 (1.00) |
0.341 (1.00) |
0.147 (1.00) |
9.23e-05 (0.0512) |
2.81e-05 (0.0161) |
0.21 (1.00) |
0.518 (1.00) |
Del Peak 18(8p23 3) | 171 (41%) | 242 |
0.00276 (1.00) |
0.000603 (0.315) |
6.84e-26 (4.58e-23) |
3.61e-06 (0.0021) |
0.207 (1.00) |
0.000243 (0.131) |
0.000672 (0.348) |
0.00231 (1.00) |
0.154 (1.00) |
0.848 (1.00) |
Del Peak 31(15q21 1) | 151 (37%) | 262 |
0.013 (1.00) |
0.0411 (1.00) |
8.15e-18 (5.39e-15) |
0.00747 (1.00) |
0.0639 (1.00) |
0.0395 (1.00) |
2.03e-07 (0.000121) |
2.05e-05 (0.0118) |
0.979 (1.00) |
0.621 (1.00) |
Amp Peak 16(17q24 1) | 92 (22%) | 321 |
0.0519 (1.00) |
0.00821 (1.00) |
1.61e-08 (9.69e-06) |
0.0123 (1.00) |
0.5 (1.00) |
0.000917 (0.465) |
6.04e-06 (0.0035) |
0.00312 (1.00) |
0.00254 (1.00) |
0.781 (1.00) |
Del Peak 42(20p12 1) | 79 (19%) | 334 |
0.0656 (1.00) |
0.173 (1.00) |
1.38e-13 (8.97e-11) |
0.00404 (1.00) |
0.501 (1.00) |
0.151 (1.00) |
0.00015 (0.0817) |
0.00674 (1.00) |
0.0931 (1.00) |
0.101 (1.00) |
Del Peak 44(22q13 32) | 138 (33%) | 275 |
0.000428 (0.228) |
0.000747 (0.384) |
9.76e-13 (6.32e-10) |
0.0049 (1.00) |
0.382 (1.00) |
0.0524 (1.00) |
0.00222 (1.00) |
0.00106 (0.535) |
0.394 (1.00) |
0.069 (1.00) |
Amp Peak 1(2q33 1) | 79 (19%) | 334 |
0.0734 (1.00) |
0.105 (1.00) |
3.05e-05 (0.0174) |
0.258 (1.00) |
0.317 (1.00) |
0.0139 (1.00) |
0.000516 (0.271) |
0.0137 (1.00) |
0.277 (1.00) |
0.258 (1.00) |
Amp Peak 2(5p13 2) | 81 (20%) | 332 |
0.334 (1.00) |
0.469 (1.00) |
0.000202 (0.109) |
0.15 (1.00) |
0.393 (1.00) |
0.543 (1.00) |
0.0864 (1.00) |
0.0696 (1.00) |
0.927 (1.00) |
0.581 (1.00) |
Amp Peak 4(6p21 1) | 89 (22%) | 324 |
0.0902 (1.00) |
0.000996 (0.503) |
3.37e-09 (2.06e-06) |
0.17 (1.00) |
0.61 (1.00) |
0.0195 (1.00) |
0.00644 (1.00) |
0.033 (1.00) |
0.776 (1.00) |
0.258 (1.00) |
Amp Peak 5(8p11 23) | 144 (35%) | 269 |
0.444 (1.00) |
0.231 (1.00) |
2.99e-13 (1.94e-10) |
0.868 (1.00) |
0.532 (1.00) |
0.446 (1.00) |
0.211 (1.00) |
0.783 (1.00) |
0.179 (1.00) |
0.189 (1.00) |
Amp Peak 6(8p11 21) | 173 (42%) | 240 |
0.355 (1.00) |
0.129 (1.00) |
4.51e-10 (2.8e-07) |
0.886 (1.00) |
0.314 (1.00) |
0.0338 (1.00) |
0.421 (1.00) |
0.606 (1.00) |
0.502 (1.00) |
0.218 (1.00) |
Amp Peak 7(8q12 1) | 215 (52%) | 198 |
0.15 (1.00) |
0.0646 (1.00) |
9.31e-12 (5.92e-09) |
0.0383 (1.00) |
0.153 (1.00) |
0.00336 (1.00) |
0.0141 (1.00) |
0.228 (1.00) |
0.126 (1.00) |
0.295 (1.00) |
Amp Peak 8(8q24 21) | 239 (58%) | 174 |
0.203 (1.00) |
0.107 (1.00) |
7.86e-14 (5.13e-11) |
0.0102 (1.00) |
0.294 (1.00) |
0.0189 (1.00) |
0.00636 (1.00) |
0.445 (1.00) |
0.404 (1.00) |
0.215 (1.00) |
Amp Peak 17(19p13 2) | 65 (16%) | 348 |
0.0535 (1.00) |
0.0345 (1.00) |
4.82e-05 (0.0272) |
0.283 (1.00) |
0.907 (1.00) |
0.596 (1.00) |
0.501 (1.00) |
0.539 (1.00) |
0.204 (1.00) |
0.385 (1.00) |
Amp Peak 19(20p12 3) | 184 (45%) | 229 |
0.00188 (0.928) |
0.000844 (0.43) |
1.86e-12 (1.2e-09) |
0.434 (1.00) |
0.0421 (1.00) |
0.324 (1.00) |
0.0305 (1.00) |
0.00972 (1.00) |
0.597 (1.00) |
0.195 (1.00) |
Amp Peak 20(20p11 23) | 205 (50%) | 208 |
0.0267 (1.00) |
0.000792 (0.406) |
1.26e-16 (8.32e-14) |
0.105 (1.00) |
0.272 (1.00) |
0.236 (1.00) |
0.000513 (0.27) |
0.00104 (0.524) |
0.455 (1.00) |
0.212 (1.00) |
Del Peak 2(1p33) | 107 (26%) | 306 |
0.0246 (1.00) |
0.532 (1.00) |
1.09e-11 (6.91e-09) |
0.00668 (1.00) |
0.106 (1.00) |
0.0356 (1.00) |
0.0051 (1.00) |
0.0141 (1.00) |
0.893 (1.00) |
0.0519 (1.00) |
Del Peak 3(1p13 1) | 103 (25%) | 310 |
0.115 (1.00) |
0.374 (1.00) |
6.85e-10 (4.25e-07) |
0.185 (1.00) |
0.308 (1.00) |
0.155 (1.00) |
0.0836 (1.00) |
0.00481 (1.00) |
0.868 (1.00) |
0.379 (1.00) |
Del Peak 4(1q43) | 44 (11%) | 369 |
0.0983 (1.00) |
0.458 (1.00) |
6.98e-06 (0.00404) |
0.105 (1.00) |
0.5 (1.00) |
0.69 (1.00) |
0.0312 (1.00) |
0.0114 (1.00) |
0.335 (1.00) |
0.301 (1.00) |
Del Peak 6(3p26 1) | 60 (15%) | 353 |
0.0994 (1.00) |
0.304 (1.00) |
0.00043 (0.228) |
0.268 (1.00) |
0.886 (1.00) |
0.464 (1.00) |
0.539 (1.00) |
0.0883 (1.00) |
0.541 (1.00) |
0.958 (1.00) |
Del Peak 12(5q11 2) | 91 (22%) | 322 |
0.00129 (0.643) |
0.00378 (1.00) |
4.94e-09 (3.01e-06) |
0.0339 (1.00) |
0.528 (1.00) |
0.0169 (1.00) |
0.00142 (0.704) |
0.00781 (1.00) |
0.835 (1.00) |
0.215 (1.00) |
Del Peak 13(5q21 3) | 117 (28%) | 296 |
0.118 (1.00) |
0.0281 (1.00) |
1.14e-09 (7.04e-07) |
0.0359 (1.00) |
0.199 (1.00) |
0.0556 (1.00) |
0.00438 (1.00) |
0.0104 (1.00) |
0.654 (1.00) |
0.36 (1.00) |
Del Peak 14(5q23 1) | 107 (26%) | 306 |
0.0628 (1.00) |
0.0356 (1.00) |
1.57e-08 (9.52e-06) |
0.087 (1.00) |
0.183 (1.00) |
0.082 (1.00) |
0.0219 (1.00) |
0.0126 (1.00) |
0.622 (1.00) |
0.246 (1.00) |
Del Peak 15(6p25 3) | 54 (13%) | 359 |
0.971 (1.00) |
0.792 (1.00) |
0.000102 (0.0568) |
0.0527 (1.00) |
0.714 (1.00) |
0.468 (1.00) |
0.353 (1.00) |
0.788 (1.00) |
0.406 (1.00) |
0.453 (1.00) |
Del Peak 20(8p11 22) | 80 (19%) | 333 |
0.213 (1.00) |
0.118 (1.00) |
8.88e-09 (5.4e-06) |
0.0614 (1.00) |
0.0178 (1.00) |
0.0394 (1.00) |
0.0993 (1.00) |
0.0804 (1.00) |
0.359 (1.00) |
0.831 (1.00) |
Del Peak 21(8p11 21) | 43 (10%) | 370 |
0.0231 (1.00) |
0.351 (1.00) |
5.81e-07 (0.000343) |
0.366 (1.00) |
0.286 (1.00) |
0.0677 (1.00) |
0.483 (1.00) |
0.308 (1.00) |
0.0997 (1.00) |
0.549 (1.00) |
Del Peak 22(9p21 3) | 56 (14%) | 357 |
0.251 (1.00) |
0.264 (1.00) |
4.51e-05 (0.0256) |
0.204 (1.00) |
0.808 (1.00) |
0.15 (1.00) |
0.0637 (1.00) |
0.127 (1.00) |
0.904 (1.00) |
0.663 (1.00) |
Del Peak 23(10p15 3) | 68 (16%) | 345 |
0.261 (1.00) |
0.141 (1.00) |
2.25e-08 (1.35e-05) |
0.0291 (1.00) |
0.331 (1.00) |
0.0519 (1.00) |
0.126 (1.00) |
0.034 (1.00) |
0.68 (1.00) |
0.566 (1.00) |
Del Peak 24(10q21 1) | 82 (20%) | 331 |
0.00928 (1.00) |
0.0374 (1.00) |
2.24e-11 (1.41e-08) |
0.194 (1.00) |
0.6 (1.00) |
0.00471 (1.00) |
0.191 (1.00) |
0.0431 (1.00) |
0.887 (1.00) |
0.831 (1.00) |
Del Peak 25(10q23 31) | 94 (23%) | 319 |
0.249 (1.00) |
0.0829 (1.00) |
3.46e-07 (0.000205) |
0.0801 (1.00) |
0.528 (1.00) |
0.214 (1.00) |
0.0348 (1.00) |
0.165 (1.00) |
0.885 (1.00) |
0.985 (1.00) |
Del Peak 26(10q25 2) | 93 (23%) | 320 |
0.172 (1.00) |
0.0105 (1.00) |
1.91e-11 (1.21e-08) |
0.0139 (1.00) |
0.148 (1.00) |
0.205 (1.00) |
0.00312 (1.00) |
0.0025 (1.00) |
0.921 (1.00) |
0.593 (1.00) |
Del Peak 27(12p13 2) | 44 (11%) | 369 |
0.0404 (1.00) |
0.00796 (1.00) |
9.87e-08 (5.89e-05) |
0.207 (1.00) |
0.452 (1.00) |
0.826 (1.00) |
0.0262 (1.00) |
0.00369 (1.00) |
0.695 (1.00) |
0.973 (1.00) |
Del Peak 28(13q14 13) | 18 (4%) | 395 |
0.395 (1.00) |
0.876 (1.00) |
0.000128 (0.0699) |
0.153 (1.00) |
0.654 (1.00) |
0.127 (1.00) |
0.228 (1.00) |
0.452 (1.00) |
0.614 (1.00) |
0.834 (1.00) |
Del Peak 43(21q11 2) | 125 (30%) | 288 |
0.00298 (1.00) |
0.0933 (1.00) |
3.37e-09 (2.06e-06) |
0.0302 (1.00) |
0.788 (1.00) |
0.319 (1.00) |
0.000897 (0.455) |
0.0187 (1.00) |
0.923 (1.00) |
0.47 (1.00) |
Amp Peak 3(5q22 3) | 40 (10%) | 373 |
0.78 (1.00) |
0.629 (1.00) |
0.0293 (1.00) |
0.875 (1.00) |
0.0317 (1.00) |
0.735 (1.00) |
0.165 (1.00) |
0.112 (1.00) |
0.693 (1.00) |
0.839 (1.00) |
Amp Peak 10(12p13 33) | 104 (25%) | 309 |
0.463 (1.00) |
0.882 (1.00) |
0.0612 (1.00) |
0.247 (1.00) |
0.521 (1.00) |
0.702 (1.00) |
0.334 (1.00) |
0.977 (1.00) |
0.304 (1.00) |
0.173 (1.00) |
Amp Peak 18(19q13 11) | 83 (20%) | 330 |
0.332 (1.00) |
0.0177 (1.00) |
0.002 (0.98) |
0.517 (1.00) |
0.261 (1.00) |
0.841 (1.00) |
0.0736 (1.00) |
0.167 (1.00) |
0.417 (1.00) |
0.491 (1.00) |
Del Peak 5(2q37 2) | 21 (5%) | 392 |
0.928 (1.00) |
0.0598 (1.00) |
0.977 (1.00) |
0.701 (1.00) |
0.0446 (1.00) |
0.768 (1.00) |
1 (1.00) |
0.184 (1.00) |
0.447 (1.00) |
0.447 (1.00) |
Del Peak 7(3p14 2) | 75 (18%) | 338 |
0.466 (1.00) |
0.744 (1.00) |
0.205 (1.00) |
0.735 (1.00) |
0.959 (1.00) |
0.483 (1.00) |
0.632 (1.00) |
0.483 (1.00) |
0.203 (1.00) |
0.536 (1.00) |
Del Peak 8(3q26 31) | 39 (9%) | 374 |
0.122 (1.00) |
0.605 (1.00) |
0.00818 (1.00) |
0.497 (1.00) |
0.0897 (1.00) |
0.385 (1.00) |
0.458 (1.00) |
0.0223 (1.00) |
0.15 (1.00) |
0.939 (1.00) |
Del Peak 16(6q26) | 60 (15%) | 353 |
0.383 (1.00) |
0.304 (1.00) |
0.157 (1.00) |
0.356 (1.00) |
0.147 (1.00) |
0.667 (1.00) |
0.873 (1.00) |
0.697 (1.00) |
0.797 (1.00) |
0.53 (1.00) |
Del Peak 17(7q31 1) | 11 (3%) | 402 |
1 (1.00) |
0.504 (1.00) |
0.816 (1.00) |
0.795 (1.00) |
0.322 (1.00) |
0.439 (1.00) |
0.49 (1.00) |
1 (1.00) |
1 (1.00) |
0.564 (1.00) |
Del Peak 33(16p13 3) | 45 (11%) | 368 |
0.334 (1.00) |
0.155 (1.00) |
0.208 (1.00) |
0.376 (1.00) |
0.174 (1.00) |
0.922 (1.00) |
0.62 (1.00) |
0.572 (1.00) |
0.842 (1.00) |
0.739 (1.00) |
Del Peak 34(16q23 1) | 49 (12%) | 364 |
0.259 (1.00) |
0.00785 (1.00) |
0.131 (1.00) |
0.337 (1.00) |
0.63 (1.00) |
0.726 (1.00) |
0.0421 (1.00) |
0.0701 (1.00) |
0.977 (1.00) |
0.505 (1.00) |
Del Peak 36(17q24 3) | 59 (14%) | 354 |
0.102 (1.00) |
0.676 (1.00) |
0.00348 (1.00) |
0.0118 (1.00) |
0.503 (1.00) |
0.121 (1.00) |
0.00329 (1.00) |
0.0329 (1.00) |
0.681 (1.00) |
0.979 (1.00) |
Del Peak 41(19p13 3) | 57 (14%) | 356 |
0.268 (1.00) |
0.198 (1.00) |
0.00362 (1.00) |
0.565 (1.00) |
0.0764 (1.00) |
0.114 (1.00) |
0.0512 (1.00) |
0.0244 (1.00) |
0.582 (1.00) |
0.0166 (1.00) |
P value = 3.05e-05 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
AMP PEAK 1(2Q33.1) MUTATED | 49 | 18 | 8 | 4 |
AMP PEAK 1(2Q33.1) WILD-TYPE | 121 | 169 | 24 | 20 |
P value = 0.000202 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
AMP PEAK 2(5P13.2) MUTATED | 46 | 20 | 10 | 5 |
AMP PEAK 2(5P13.2) WILD-TYPE | 124 | 167 | 22 | 19 |
P value = 3.37e-09 (Fisher's exact test), Q value = 2.1e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
AMP PEAK 4(6P21.1) MUTATED | 61 | 16 | 8 | 4 |
AMP PEAK 4(6P21.1) WILD-TYPE | 109 | 171 | 24 | 20 |
P value = 2.99e-13 (Fisher's exact test), Q value = 1.9e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
AMP PEAK 5(8P11.23) MUTATED | 56 | 47 | 17 | 24 |
AMP PEAK 5(8P11.23) WILD-TYPE | 114 | 140 | 15 | 0 |
P value = 4.51e-10 (Fisher's exact test), Q value = 2.8e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
AMP PEAK 6(8P11.21) MUTATED | 75 | 55 | 21 | 22 |
AMP PEAK 6(8P11.21) WILD-TYPE | 95 | 132 | 11 | 2 |
P value = 9.31e-12 (Fisher's exact test), Q value = 5.9e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
AMP PEAK 7(8Q12.1) MUTATED | 106 | 64 | 23 | 22 |
AMP PEAK 7(8Q12.1) WILD-TYPE | 64 | 123 | 9 | 2 |
P value = 7.86e-14 (Fisher's exact test), Q value = 5.1e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
AMP PEAK 8(8Q24.21) MUTATED | 119 | 73 | 23 | 24 |
AMP PEAK 8(8Q24.21) WILD-TYPE | 51 | 114 | 9 | 0 |
P value = 1.38e-05 (Fisher's exact test), Q value = 0.0079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 62 | 30 | 23 |
AMP PEAK 9(11P15.5) MUTATED | 1 | 17 | 3 | 13 |
AMP PEAK 9(11P15.5) WILD-TYPE | 30 | 45 | 27 | 10 |
P value = 0.000201 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 44 | 46 |
AMP PEAK 9(11P15.5) MUTATED | 14 | 2 | 18 |
AMP PEAK 9(11P15.5) WILD-TYPE | 42 | 42 | 28 |
P value = 1.54e-09 (Fisher's exact test), Q value = 9.5e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
AMP PEAK 9(11P15.5) MUTATED | 54 | 17 | 14 | 1 |
AMP PEAK 9(11P15.5) WILD-TYPE | 116 | 170 | 18 | 23 |
P value = 7.21e-08 (Fisher's exact test), Q value = 4.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 62 | 30 | 23 |
AMP PEAK 11(13Q12.13) MUTATED | 14 | 52 | 8 | 18 |
AMP PEAK 11(13Q12.13) WILD-TYPE | 17 | 10 | 22 | 5 |
P value = 5.27e-06 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 44 | 46 |
AMP PEAK 11(13Q12.13) MUTATED | 39 | 15 | 38 |
AMP PEAK 11(13Q12.13) WILD-TYPE | 17 | 29 | 8 |
P value = 5.04e-36 (Fisher's exact test), Q value = 3.4e-33
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
AMP PEAK 11(13Q12.13) MUTATED | 158 | 57 | 18 | 17 |
AMP PEAK 11(13Q12.13) WILD-TYPE | 12 | 130 | 14 | 7 |
P value = 0.00027 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 86 | 63 |
AMP PEAK 11(13Q12.13) MUTATED | 79 | 42 | 33 |
AMP PEAK 11(13Q12.13) WILD-TYPE | 26 | 44 | 30 |
P value = 1.27e-06 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
AMP PEAK 11(13Q12.13) MUTATED | 22 | 46 | 26 | 16 |
AMP PEAK 11(13Q12.13) WILD-TYPE | 9 | 13 | 21 | 38 |
P value = 0.000196 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 62 | 80 |
AMP PEAK 11(13Q12.13) MUTATED | 16 | 43 | 51 |
AMP PEAK 11(13Q12.13) WILD-TYPE | 33 | 19 | 29 |
P value = 6.34e-05 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 62 | 30 | 23 |
AMP PEAK 12(13Q22.1) MUTATED | 15 | 49 | 10 | 17 |
AMP PEAK 12(13Q22.1) WILD-TYPE | 16 | 13 | 20 | 6 |
P value = 5.43e-05 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 44 | 46 |
AMP PEAK 12(13Q22.1) MUTATED | 38 | 16 | 37 |
AMP PEAK 12(13Q22.1) WILD-TYPE | 18 | 28 | 9 |
P value = 7.2e-33 (Fisher's exact test), Q value = 4.8e-30
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
AMP PEAK 12(13Q22.1) MUTATED | 158 | 63 | 17 | 16 |
AMP PEAK 12(13Q22.1) WILD-TYPE | 12 | 124 | 15 | 8 |
P value = 1.15e-06 (Fisher's exact test), Q value = 0.00067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
AMP PEAK 12(13Q22.1) MUTATED | 22 | 49 | 25 | 19 |
AMP PEAK 12(13Q22.1) WILD-TYPE | 9 | 10 | 22 | 35 |
P value = 7.67e-05 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 62 | 80 |
AMP PEAK 12(13Q22.1) MUTATED | 17 | 46 | 52 |
AMP PEAK 12(13Q22.1) WILD-TYPE | 32 | 16 | 28 |
P value = 0.000447 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 62 | 30 | 23 |
AMP PEAK 13(16P11.2) MUTATED | 5 | 23 | 3 | 13 |
AMP PEAK 13(16P11.2) WILD-TYPE | 26 | 39 | 27 | 10 |
P value = 0.000375 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 44 | 46 |
AMP PEAK 13(16P11.2) MUTATED | 13 | 7 | 24 |
AMP PEAK 13(16P11.2) WILD-TYPE | 43 | 37 | 22 |
P value = 8.55e-19 (Fisher's exact test), Q value = 5.7e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
AMP PEAK 13(16P11.2) MUTATED | 88 | 18 | 8 | 2 |
AMP PEAK 13(16P11.2) WILD-TYPE | 82 | 169 | 24 | 22 |
P value = 0.000429 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
AMP PEAK 13(16P11.2) MUTATED | 8 | 24 | 13 | 4 |
AMP PEAK 13(16P11.2) WILD-TYPE | 23 | 35 | 34 | 50 |
P value = 3.02e-05 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 62 | 30 | 23 |
AMP PEAK 14(16Q12.1) MUTATED | 3 | 21 | 2 | 13 |
AMP PEAK 14(16Q12.1) WILD-TYPE | 28 | 41 | 28 | 10 |
P value = 0.000126 (Fisher's exact test), Q value = 0.069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 44 | 46 |
AMP PEAK 14(16Q12.1) MUTATED | 13 | 4 | 22 |
AMP PEAK 14(16Q12.1) WILD-TYPE | 43 | 40 | 24 |
P value = 1.67e-20 (Fisher's exact test), Q value = 1.1e-17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
AMP PEAK 14(16Q12.1) MUTATED | 82 | 12 | 7 | 1 |
AMP PEAK 14(16Q12.1) WILD-TYPE | 88 | 175 | 25 | 23 |
P value = 7.53e-07 (Fisher's exact test), Q value = 0.00044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
AMP PEAK 15(17Q12) MUTATED | 62 | 23 | 8 | 8 |
AMP PEAK 15(17Q12) WILD-TYPE | 108 | 164 | 24 | 16 |
P value = 0.000254 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 25 | 140 | 48 |
AMP PEAK 15(17Q12) MUTATED | 7 | 0 | 41 | 17 |
AMP PEAK 15(17Q12) WILD-TYPE | 44 | 25 | 99 | 31 |
P value = 4.59e-05 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
AMP PEAK 15(17Q12) MUTATED | 8 | 26 | 6 | 5 |
AMP PEAK 15(17Q12) WILD-TYPE | 23 | 33 | 41 | 49 |
P value = 1.61e-08 (Fisher's exact test), Q value = 9.7e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
AMP PEAK 16(17Q24.1) MUTATED | 59 | 17 | 8 | 8 |
AMP PEAK 16(17Q24.1) WILD-TYPE | 111 | 170 | 24 | 16 |
P value = 6.04e-06 (Fisher's exact test), Q value = 0.0035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
AMP PEAK 16(17Q24.1) MUTATED | 9 | 26 | 4 | 5 |
AMP PEAK 16(17Q24.1) WILD-TYPE | 22 | 33 | 43 | 49 |
P value = 4.82e-05 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
AMP PEAK 17(19P13.2) MUTATED | 39 | 13 | 8 | 5 |
AMP PEAK 17(19P13.2) WILD-TYPE | 131 | 174 | 24 | 19 |
P value = 1.86e-12 (Fisher's exact test), Q value = 1.2e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
AMP PEAK 19(20P12.3) MUTATED | 83 | 58 | 31 | 12 |
AMP PEAK 19(20P12.3) WILD-TYPE | 87 | 129 | 1 | 12 |
P value = 1.26e-16 (Fisher's exact test), Q value = 8.3e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
AMP PEAK 20(20P11.23) MUTATED | 102 | 58 | 32 | 13 |
AMP PEAK 20(20P11.23) WILD-TYPE | 68 | 129 | 0 | 11 |
P value = 4.27e-05 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 44 | 46 |
AMP PEAK 21(20P11.21) MUTATED | 38 | 12 | 31 |
AMP PEAK 21(20P11.21) WILD-TYPE | 18 | 32 | 15 |
P value = 4e-23 (Fisher's exact test), Q value = 2.7e-20
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
AMP PEAK 21(20P11.21) MUTATED | 126 | 58 | 32 | 14 |
AMP PEAK 21(20P11.21) WILD-TYPE | 44 | 129 | 0 | 10 |
P value = 2.41e-07 (Fisher's exact test), Q value = 0.00014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
AMP PEAK 21(20P11.21) MUTATED | 19 | 44 | 24 | 12 |
AMP PEAK 21(20P11.21) WILD-TYPE | 12 | 15 | 23 | 42 |
P value = 1.39e-06 (Fisher's exact test), Q value = 0.00081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 62 | 80 |
AMP PEAK 21(20P11.21) MUTATED | 10 | 40 | 49 |
AMP PEAK 21(20P11.21) WILD-TYPE | 39 | 22 | 31 |
P value = 1.07e-10 (Fisher's exact test), Q value = 6.7e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 62 | 30 | 23 |
AMP PEAK 22(20Q11.21) MUTATED | 12 | 59 | 14 | 20 |
AMP PEAK 22(20Q11.21) WILD-TYPE | 19 | 3 | 16 | 3 |
P value = 2.86e-11 (Fisher's exact test), Q value = 1.8e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 44 | 46 |
AMP PEAK 22(20Q11.21) MUTATED | 50 | 14 | 41 |
AMP PEAK 22(20Q11.21) WILD-TYPE | 6 | 30 | 5 |
P value = 1.54e-43 (Fisher's exact test), Q value = 1e-40
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
AMP PEAK 22(20Q11.21) MUTATED | 167 | 74 | 32 | 23 |
AMP PEAK 22(20Q11.21) WILD-TYPE | 3 | 113 | 0 | 1 |
P value = 2.19e-09 (Fisher's exact test), Q value = 1.3e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 86 | 63 |
AMP PEAK 22(20Q11.21) MUTATED | 96 | 46 | 40 |
AMP PEAK 22(20Q11.21) WILD-TYPE | 9 | 40 | 23 |
P value = 0.000232 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 25 | 140 | 48 |
AMP PEAK 22(20Q11.21) MUTATED | 26 | 14 | 103 | 42 |
AMP PEAK 22(20Q11.21) WILD-TYPE | 25 | 11 | 37 | 6 |
P value = 1.47e-14 (Fisher's exact test), Q value = 9.6e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
AMP PEAK 22(20Q11.21) MUTATED | 23 | 58 | 34 | 17 |
AMP PEAK 22(20Q11.21) WILD-TYPE | 8 | 1 | 13 | 37 |
P value = 3.85e-12 (Fisher's exact test), Q value = 2.5e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 62 | 80 |
AMP PEAK 22(20Q11.21) MUTATED | 14 | 56 | 62 |
AMP PEAK 22(20Q11.21) WILD-TYPE | 35 | 6 | 18 |
P value = 9.28e-12 (Fisher's exact test), Q value = 5.9e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 62 | 30 | 23 |
AMP PEAK 23(20Q12) MUTATED | 11 | 59 | 13 | 20 |
AMP PEAK 23(20Q12) WILD-TYPE | 20 | 3 | 17 | 3 |
P value = 1.82e-11 (Fisher's exact test), Q value = 1.1e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 44 | 46 |
AMP PEAK 23(20Q12) MUTATED | 49 | 13 | 41 |
AMP PEAK 23(20Q12) WILD-TYPE | 7 | 31 | 5 |
P value = 6.28e-43 (Fisher's exact test), Q value = 4.2e-40
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
AMP PEAK 23(20Q12) MUTATED | 167 | 75 | 32 | 23 |
AMP PEAK 23(20Q12) WILD-TYPE | 3 | 112 | 0 | 1 |
P value = 1.58e-08 (Fisher's exact test), Q value = 9.6e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 86 | 63 |
AMP PEAK 23(20Q12) MUTATED | 96 | 48 | 41 |
AMP PEAK 23(20Q12) WILD-TYPE | 9 | 38 | 22 |
P value = 0.000167 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 25 | 140 | 48 |
AMP PEAK 23(20Q12) MUTATED | 27 | 14 | 103 | 43 |
AMP PEAK 23(20Q12) WILD-TYPE | 24 | 11 | 37 | 5 |
P value = 5.48e-14 (Fisher's exact test), Q value = 3.6e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
AMP PEAK 23(20Q12) MUTATED | 23 | 58 | 35 | 18 |
AMP PEAK 23(20Q12) WILD-TYPE | 8 | 1 | 12 | 36 |
P value = 1.34e-11 (Fisher's exact test), Q value = 8.5e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 62 | 80 |
AMP PEAK 23(20Q12) MUTATED | 15 | 56 | 63 |
AMP PEAK 23(20Q12) WILD-TYPE | 34 | 6 | 17 |
P value = 2.87e-10 (Fisher's exact test), Q value = 1.8e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 62 | 30 | 23 |
AMP PEAK 24(20Q13.32) MUTATED | 12 | 59 | 15 | 20 |
AMP PEAK 24(20Q13.32) WILD-TYPE | 19 | 3 | 15 | 3 |
P value = 6.27e-12 (Fisher's exact test), Q value = 4e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 44 | 46 |
AMP PEAK 24(20Q13.32) MUTATED | 51 | 14 | 41 |
AMP PEAK 24(20Q13.32) WILD-TYPE | 5 | 30 | 5 |
P value = 3.18e-43 (Fisher's exact test), Q value = 2.1e-40
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
AMP PEAK 24(20Q13.32) MUTATED | 168 | 77 | 32 | 23 |
AMP PEAK 24(20Q13.32) WILD-TYPE | 2 | 110 | 0 | 1 |
P value = 1.58e-08 (Fisher's exact test), Q value = 9.6e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 86 | 63 |
AMP PEAK 24(20Q13.32) MUTATED | 96 | 48 | 41 |
AMP PEAK 24(20Q13.32) WILD-TYPE | 9 | 38 | 22 |
P value = 0.000119 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 25 | 140 | 48 |
AMP PEAK 24(20Q13.32) MUTATED | 27 | 14 | 105 | 43 |
AMP PEAK 24(20Q13.32) WILD-TYPE | 24 | 11 | 35 | 5 |
P value = 5.48e-14 (Fisher's exact test), Q value = 3.6e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
AMP PEAK 24(20Q13.32) MUTATED | 23 | 58 | 35 | 18 |
AMP PEAK 24(20Q13.32) WILD-TYPE | 8 | 1 | 12 | 36 |
P value = 1.34e-11 (Fisher's exact test), Q value = 8.5e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 62 | 80 |
AMP PEAK 24(20Q13.32) MUTATED | 15 | 56 | 63 |
AMP PEAK 24(20Q13.32) WILD-TYPE | 34 | 6 | 17 |
P value = 6.81e-05 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 62 | 30 | 23 |
DEL PEAK 1(1P36.11) MUTATED | 9 | 35 | 3 | 11 |
DEL PEAK 1(1P36.11) WILD-TYPE | 22 | 27 | 27 | 12 |
P value = 6.32e-17 (Fisher's exact test), Q value = 4.2e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 1(1P36.11) MUTATED | 91 | 28 | 22 | 9 |
DEL PEAK 1(1P36.11) WILD-TYPE | 79 | 159 | 10 | 15 |
P value = 0.000347 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
DEL PEAK 1(1P36.11) MUTATED | 11 | 31 | 17 | 8 |
DEL PEAK 1(1P36.11) WILD-TYPE | 20 | 28 | 30 | 46 |
P value = 1.09e-11 (Fisher's exact test), Q value = 6.9e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 2(1P33) MUTATED | 69 | 20 | 15 | 3 |
DEL PEAK 2(1P33) WILD-TYPE | 101 | 167 | 17 | 21 |
P value = 6.85e-10 (Fisher's exact test), Q value = 4.3e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 3(1P13.1) MUTATED | 66 | 23 | 13 | 1 |
DEL PEAK 3(1P13.1) WILD-TYPE | 104 | 164 | 19 | 23 |
P value = 6.98e-06 (Fisher's exact test), Q value = 0.004
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 4(1Q43) MUTATED | 32 | 7 | 5 | 0 |
DEL PEAK 4(1Q43) WILD-TYPE | 138 | 180 | 27 | 24 |
P value = 0.00043 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 6(3P26.1) MUTATED | 36 | 14 | 8 | 2 |
DEL PEAK 6(3P26.1) WILD-TYPE | 134 | 173 | 24 | 22 |
P value = 1.16e-12 (Fisher's exact test), Q value = 7.5e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 9(4P16.2) MUTATED | 73 | 23 | 19 | 6 |
DEL PEAK 9(4P16.2) WILD-TYPE | 97 | 164 | 13 | 18 |
P value = 0.000237 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
DEL PEAK 9(4P16.2) MUTATED | 9 | 24 | 16 | 4 |
DEL PEAK 9(4P16.2) WILD-TYPE | 22 | 35 | 31 | 50 |
P value = 0.000107 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 62 | 80 |
DEL PEAK 9(4P16.2) MUTATED | 3 | 23 | 27 |
DEL PEAK 9(4P16.2) WILD-TYPE | 46 | 39 | 53 |
P value = 8.5e-12 (Fisher's exact test), Q value = 5.4e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 10(4Q22.1) MUTATED | 77 | 28 | 18 | 3 |
DEL PEAK 10(4Q22.1) WILD-TYPE | 93 | 159 | 14 | 21 |
P value = 9.23e-05 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
DEL PEAK 10(4Q22.1) MUTATED | 9 | 28 | 15 | 5 |
DEL PEAK 10(4Q22.1) WILD-TYPE | 22 | 31 | 32 | 49 |
P value = 2.81e-05 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 62 | 80 |
DEL PEAK 10(4Q22.1) MUTATED | 3 | 25 | 29 |
DEL PEAK 10(4Q22.1) WILD-TYPE | 46 | 37 | 51 |
P value = 0.000128 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 62 | 30 | 23 |
DEL PEAK 11(4Q35.1) MUTATED | 7 | 30 | 3 | 13 |
DEL PEAK 11(4Q35.1) WILD-TYPE | 24 | 32 | 27 | 10 |
P value = 1.05e-13 (Fisher's exact test), Q value = 6.8e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 11(4Q35.1) MUTATED | 88 | 28 | 16 | 5 |
DEL PEAK 11(4Q35.1) WILD-TYPE | 82 | 159 | 16 | 19 |
P value = 7.69e-05 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 86 | 63 |
DEL PEAK 11(4Q35.1) MUTATED | 46 | 13 | 20 |
DEL PEAK 11(4Q35.1) WILD-TYPE | 59 | 73 | 43 |
P value = 0.000239 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
DEL PEAK 11(4Q35.1) MUTATED | 11 | 30 | 15 | 7 |
DEL PEAK 11(4Q35.1) WILD-TYPE | 20 | 29 | 32 | 47 |
P value = 4.94e-09 (Fisher's exact test), Q value = 3e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 12(5Q11.2) MUTATED | 60 | 16 | 9 | 6 |
DEL PEAK 12(5Q11.2) WILD-TYPE | 110 | 171 | 23 | 18 |
P value = 1.14e-09 (Fisher's exact test), Q value = 7e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 13(5Q21.3) MUTATED | 71 | 24 | 14 | 8 |
DEL PEAK 13(5Q21.3) WILD-TYPE | 99 | 163 | 18 | 16 |
P value = 1.57e-08 (Fisher's exact test), Q value = 9.5e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 14(5Q23.1) MUTATED | 64 | 22 | 13 | 8 |
DEL PEAK 14(5Q23.1) WILD-TYPE | 106 | 165 | 19 | 16 |
P value = 0.000102 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 15(6P25.3) MUTATED | 13 | 23 | 9 | 9 |
DEL PEAK 15(6P25.3) WILD-TYPE | 157 | 164 | 23 | 15 |
P value = 6.84e-26 (Fisher's exact test), Q value = 4.6e-23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 18(8P23.3) MUTATED | 119 | 32 | 6 | 14 |
DEL PEAK 18(8P23.3) WILD-TYPE | 51 | 155 | 26 | 10 |
P value = 3.61e-06 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 86 | 63 |
DEL PEAK 18(8P23.3) MUTATED | 62 | 21 | 22 |
DEL PEAK 18(8P23.3) WILD-TYPE | 43 | 65 | 41 |
P value = 0.000243 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 25 | 140 | 48 |
DEL PEAK 18(8P23.3) MUTATED | 11 | 5 | 61 | 28 |
DEL PEAK 18(8P23.3) WILD-TYPE | 40 | 20 | 79 | 20 |
P value = 2.41e-30 (Fisher's exact test), Q value = 1.6e-27
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 19(8P22) MUTATED | 129 | 33 | 8 | 15 |
DEL PEAK 19(8P22) WILD-TYPE | 41 | 154 | 24 | 9 |
P value = 3.46e-07 (Fisher's exact test), Q value = 0.00021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 86 | 63 |
DEL PEAK 19(8P22) MUTATED | 69 | 24 | 24 |
DEL PEAK 19(8P22) WILD-TYPE | 36 | 62 | 39 |
P value = 1.28e-05 (Fisher's exact test), Q value = 0.0074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 25 | 140 | 48 |
DEL PEAK 19(8P22) MUTATED | 12 | 5 | 70 | 31 |
DEL PEAK 19(8P22) WILD-TYPE | 39 | 20 | 70 | 17 |
P value = 2.16e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
DEL PEAK 19(8P22) MUTATED | 17 | 38 | 21 | 11 |
DEL PEAK 19(8P22) WILD-TYPE | 14 | 21 | 26 | 43 |
P value = 8.88e-09 (Fisher's exact test), Q value = 5.4e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 20(8P11.22) MUTATED | 58 | 18 | 3 | 1 |
DEL PEAK 20(8P11.22) WILD-TYPE | 112 | 169 | 29 | 23 |
P value = 5.81e-07 (Fisher's exact test), Q value = 0.00034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 21(8P11.21) MUTATED | 35 | 7 | 1 | 0 |
DEL PEAK 21(8P11.21) WILD-TYPE | 135 | 180 | 31 | 24 |
P value = 4.51e-05 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 22(9P21.3) MUTATED | 35 | 10 | 7 | 4 |
DEL PEAK 22(9P21.3) WILD-TYPE | 135 | 177 | 25 | 20 |
P value = 2.25e-08 (Fisher's exact test), Q value = 1.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 23(10P15.3) MUTATED | 38 | 12 | 15 | 3 |
DEL PEAK 23(10P15.3) WILD-TYPE | 132 | 175 | 17 | 21 |
P value = 2.24e-11 (Fisher's exact test), Q value = 1.4e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 24(10Q21.1) MUTATED | 48 | 12 | 17 | 5 |
DEL PEAK 24(10Q21.1) WILD-TYPE | 122 | 175 | 15 | 19 |
P value = 3.46e-07 (Fisher's exact test), Q value = 0.00021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 25(10Q23.31) MUTATED | 53 | 21 | 15 | 5 |
DEL PEAK 25(10Q23.31) WILD-TYPE | 117 | 166 | 17 | 19 |
P value = 1.91e-11 (Fisher's exact test), Q value = 1.2e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 26(10Q25.2) MUTATED | 57 | 16 | 17 | 3 |
DEL PEAK 26(10Q25.2) WILD-TYPE | 113 | 171 | 15 | 21 |
P value = 9.87e-08 (Fisher's exact test), Q value = 5.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 27(12P13.2) MUTATED | 34 | 4 | 5 | 1 |
DEL PEAK 27(12P13.2) WILD-TYPE | 136 | 183 | 27 | 23 |
P value = 0.000128 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 28(13Q14.13) MUTATED | 1 | 9 | 6 | 2 |
DEL PEAK 28(13Q14.13) WILD-TYPE | 169 | 178 | 26 | 22 |
P value = 2.12e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 62 | 30 | 23 |
DEL PEAK 29(14Q32.11) MUTATED | 7 | 35 | 3 | 11 |
DEL PEAK 29(14Q32.11) WILD-TYPE | 24 | 27 | 27 | 12 |
P value = 0.00011 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 44 | 46 |
DEL PEAK 29(14Q32.11) MUTATED | 22 | 7 | 27 |
DEL PEAK 29(14Q32.11) WILD-TYPE | 34 | 37 | 19 |
P value = 1.61e-20 (Fisher's exact test), Q value = 1.1e-17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 29(14Q32.11) MUTATED | 98 | 22 | 10 | 3 |
DEL PEAK 29(14Q32.11) WILD-TYPE | 72 | 165 | 22 | 21 |
P value = 7.3e-05 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
DEL PEAK 29(14Q32.11) MUTATED | 11 | 28 | 13 | 5 |
DEL PEAK 29(14Q32.11) WILD-TYPE | 20 | 31 | 34 | 49 |
P value = 0.000422 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 62 | 30 | 23 |
DEL PEAK 30(15Q11.2) MUTATED | 8 | 35 | 5 | 12 |
DEL PEAK 30(15Q11.2) WILD-TYPE | 23 | 27 | 25 | 11 |
P value = 1.2e-21 (Fisher's exact test), Q value = 8e-19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 30(15Q11.2) MUTATED | 104 | 29 | 22 | 5 |
DEL PEAK 30(15Q11.2) WILD-TYPE | 66 | 158 | 10 | 19 |
P value = 2.09e-06 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
DEL PEAK 30(15Q11.2) MUTATED | 13 | 32 | 19 | 5 |
DEL PEAK 30(15Q11.2) WILD-TYPE | 18 | 27 | 28 | 49 |
P value = 0.000117 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 62 | 80 |
DEL PEAK 30(15Q11.2) MUTATED | 6 | 29 | 34 |
DEL PEAK 30(15Q11.2) WILD-TYPE | 43 | 33 | 46 |
P value = 8.15e-18 (Fisher's exact test), Q value = 5.4e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 31(15Q21.1) MUTATED | 97 | 30 | 20 | 4 |
DEL PEAK 31(15Q21.1) WILD-TYPE | 73 | 157 | 12 | 20 |
P value = 2.03e-07 (Fisher's exact test), Q value = 0.00012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
DEL PEAK 31(15Q21.1) MUTATED | 12 | 31 | 17 | 3 |
DEL PEAK 31(15Q21.1) WILD-TYPE | 19 | 28 | 30 | 51 |
P value = 2.05e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 62 | 80 |
DEL PEAK 31(15Q21.1) MUTATED | 4 | 28 | 31 |
DEL PEAK 31(15Q21.1) WILD-TYPE | 45 | 34 | 49 |
P value = 2.48e-21 (Fisher's exact test), Q value = 1.7e-18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 32(15Q22.33) MUTATED | 96 | 23 | 21 | 5 |
DEL PEAK 32(15Q22.33) WILD-TYPE | 74 | 164 | 11 | 19 |
P value = 0.000435 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 86 | 63 |
DEL PEAK 32(15Q22.33) MUTATED | 49 | 17 | 22 |
DEL PEAK 32(15Q22.33) WILD-TYPE | 56 | 69 | 41 |
P value = 3.07e-08 (Fisher's exact test), Q value = 1.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
DEL PEAK 32(15Q22.33) MUTATED | 13 | 33 | 17 | 3 |
DEL PEAK 32(15Q22.33) WILD-TYPE | 18 | 26 | 30 | 51 |
P value = 7.55e-06 (Fisher's exact test), Q value = 0.0044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 62 | 80 |
DEL PEAK 32(15Q22.33) MUTATED | 4 | 29 | 33 |
DEL PEAK 32(15Q22.33) WILD-TYPE | 45 | 33 | 47 |
P value = 6.12e-08 (Fisher's exact test), Q value = 3.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 62 | 30 | 23 |
DEL PEAK 35(17P12) MUTATED | 10 | 49 | 7 | 16 |
DEL PEAK 35(17P12) WILD-TYPE | 21 | 13 | 23 | 7 |
P value = 1.6e-06 (Fisher's exact test), Q value = 0.00093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 44 | 46 |
DEL PEAK 35(17P12) MUTATED | 36 | 11 | 35 |
DEL PEAK 35(17P12) WILD-TYPE | 20 | 33 | 11 |
P value = 2.81e-35 (Fisher's exact test), Q value = 1.9e-32
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 35(17P12) MUTATED | 146 | 43 | 24 | 16 |
DEL PEAK 35(17P12) WILD-TYPE | 24 | 144 | 8 | 8 |
P value = 1.8e-09 (Fisher's exact test), Q value = 1.1e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 86 | 63 |
DEL PEAK 35(17P12) MUTATED | 82 | 30 | 29 |
DEL PEAK 35(17P12) WILD-TYPE | 23 | 56 | 34 |
P value = 1.9e-06 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 25 | 140 | 48 |
DEL PEAK 35(17P12) MUTATED | 16 | 7 | 86 | 36 |
DEL PEAK 35(17P12) WILD-TYPE | 35 | 18 | 54 | 12 |
P value = 1.06e-10 (Fisher's exact test), Q value = 6.6e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
DEL PEAK 35(17P12) MUTATED | 20 | 49 | 23 | 11 |
DEL PEAK 35(17P12) WILD-TYPE | 11 | 10 | 24 | 43 |
P value = 3.2e-08 (Fisher's exact test), Q value = 1.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 62 | 80 |
DEL PEAK 35(17P12) MUTATED | 11 | 48 | 44 |
DEL PEAK 35(17P12) WILD-TYPE | 38 | 14 | 36 |
P value = 1.51e-12 (Fisher's exact test), Q value = 9.7e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 62 | 30 | 23 |
DEL PEAK 37(18P11.31) MUTATED | 6 | 51 | 5 | 16 |
DEL PEAK 37(18P11.31) WILD-TYPE | 25 | 11 | 25 | 7 |
P value = 3.65e-09 (Fisher's exact test), Q value = 2.2e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 44 | 46 |
DEL PEAK 37(18P11.31) MUTATED | 36 | 7 | 35 |
DEL PEAK 37(18P11.31) WILD-TYPE | 20 | 37 | 11 |
P value = 1.93e-42 (Fisher's exact test), Q value = 1.3e-39
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 37(18P11.31) MUTATED | 145 | 34 | 28 | 13 |
DEL PEAK 37(18P11.31) WILD-TYPE | 25 | 153 | 4 | 11 |
P value = 3.11e-13 (Fisher's exact test), Q value = 2e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 86 | 63 |
DEL PEAK 37(18P11.31) MUTATED | 83 | 22 | 31 |
DEL PEAK 37(18P11.31) WILD-TYPE | 22 | 64 | 32 |
P value = 7.24e-05 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 25 | 140 | 48 |
DEL PEAK 37(18P11.31) MUTATED | 16 | 7 | 87 | 29 |
DEL PEAK 37(18P11.31) WILD-TYPE | 35 | 18 | 53 | 19 |
P value = 3.11e-17 (Fisher's exact test), Q value = 2.1e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
DEL PEAK 37(18P11.31) MUTATED | 17 | 52 | 24 | 5 |
DEL PEAK 37(18P11.31) WILD-TYPE | 14 | 7 | 23 | 49 |
P value = 8.19e-10 (Fisher's exact test), Q value = 5.1e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 62 | 80 |
DEL PEAK 37(18P11.31) MUTATED | 7 | 45 | 46 |
DEL PEAK 37(18P11.31) WILD-TYPE | 42 | 17 | 34 |
P value = 8.37e-11 (Fisher's exact test), Q value = 5.2e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 62 | 30 | 23 |
DEL PEAK 38(18Q12.2) MUTATED | 8 | 53 | 8 | 17 |
DEL PEAK 38(18Q12.2) WILD-TYPE | 23 | 9 | 22 | 6 |
P value = 1.08e-09 (Fisher's exact test), Q value = 6.7e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 44 | 46 |
DEL PEAK 38(18Q12.2) MUTATED | 39 | 9 | 38 |
DEL PEAK 38(18Q12.2) WILD-TYPE | 17 | 35 | 8 |
P value = 1.87e-45 (Fisher's exact test), Q value = 1.3e-42
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 38(18Q12.2) MUTATED | 157 | 44 | 27 | 19 |
DEL PEAK 38(18Q12.2) WILD-TYPE | 13 | 143 | 5 | 5 |
P value = 8.98e-16 (Fisher's exact test), Q value = 5.9e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 86 | 63 |
DEL PEAK 38(18Q12.2) MUTATED | 93 | 29 | 31 |
DEL PEAK 38(18Q12.2) WILD-TYPE | 12 | 57 | 32 |
P value = 6.99e-05 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 25 | 140 | 48 |
DEL PEAK 38(18Q12.2) MUTATED | 19 | 8 | 91 | 34 |
DEL PEAK 38(18Q12.2) WILD-TYPE | 32 | 17 | 49 | 14 |
P value = 7.66e-16 (Fisher's exact test), Q value = 5e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
DEL PEAK 38(18Q12.2) MUTATED | 21 | 53 | 28 | 8 |
DEL PEAK 38(18Q12.2) WILD-TYPE | 10 | 6 | 19 | 46 |
P value = 1.07e-08 (Fisher's exact test), Q value = 6.5e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 62 | 80 |
DEL PEAK 38(18Q12.2) MUTATED | 11 | 48 | 51 |
DEL PEAK 38(18Q12.2) WILD-TYPE | 38 | 14 | 29 |
P value = 3.06e-10 (Fisher's exact test), Q value = 1.9e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 62 | 30 | 23 |
DEL PEAK 39(18Q21.2) MUTATED | 8 | 53 | 9 | 17 |
DEL PEAK 39(18Q21.2) WILD-TYPE | 23 | 9 | 21 | 6 |
P value = 6.85e-10 (Fisher's exact test), Q value = 4.3e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 44 | 46 |
DEL PEAK 39(18Q21.2) MUTATED | 40 | 9 | 38 |
DEL PEAK 39(18Q21.2) WILD-TYPE | 16 | 35 | 8 |
P value = 1.51e-45 (Fisher's exact test), Q value = 1e-42
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 39(18Q21.2) MUTATED | 161 | 51 | 28 | 20 |
DEL PEAK 39(18Q21.2) WILD-TYPE | 9 | 136 | 4 | 4 |
P value = 3.29e-12 (Fisher's exact test), Q value = 2.1e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 86 | 63 |
DEL PEAK 39(18Q21.2) MUTATED | 94 | 38 | 33 |
DEL PEAK 39(18Q21.2) WILD-TYPE | 11 | 48 | 30 |
P value = 4.51e-05 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 25 | 140 | 48 |
DEL PEAK 39(18Q21.2) MUTATED | 21 | 9 | 97 | 36 |
DEL PEAK 39(18Q21.2) WILD-TYPE | 30 | 16 | 43 | 12 |
P value = 8.74e-13 (Fisher's exact test), Q value = 5.7e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
DEL PEAK 39(18Q21.2) MUTATED | 21 | 54 | 29 | 13 |
DEL PEAK 39(18Q21.2) WILD-TYPE | 10 | 5 | 18 | 41 |
P value = 7.14e-07 (Fisher's exact test), Q value = 0.00042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 62 | 80 |
DEL PEAK 39(18Q21.2) MUTATED | 15 | 49 | 53 |
DEL PEAK 39(18Q21.2) WILD-TYPE | 34 | 13 | 27 |
P value = 6.92e-11 (Fisher's exact test), Q value = 4.3e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 62 | 30 | 23 |
DEL PEAK 40(18Q22.1) MUTATED | 8 | 54 | 9 | 17 |
DEL PEAK 40(18Q22.1) WILD-TYPE | 23 | 8 | 21 | 6 |
P value = 3.65e-09 (Fisher's exact test), Q value = 2.2e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 44 | 46 |
DEL PEAK 40(18Q22.1) MUTATED | 40 | 10 | 38 |
DEL PEAK 40(18Q22.1) WILD-TYPE | 16 | 34 | 8 |
P value = 1.58e-47 (Fisher's exact test), Q value = 1.1e-44
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 40(18Q22.1) MUTATED | 162 | 50 | 29 | 19 |
DEL PEAK 40(18Q22.1) WILD-TYPE | 8 | 137 | 3 | 5 |
P value = 2.02e-12 (Fisher's exact test), Q value = 1.3e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 86 | 63 |
DEL PEAK 40(18Q22.1) MUTATED | 94 | 38 | 32 |
DEL PEAK 40(18Q22.1) WILD-TYPE | 11 | 48 | 31 |
P value = 3.16e-05 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 51 | 25 | 140 | 48 |
DEL PEAK 40(18Q22.1) MUTATED | 21 | 9 | 98 | 36 |
DEL PEAK 40(18Q22.1) WILD-TYPE | 30 | 16 | 42 | 12 |
P value = 4.05e-12 (Fisher's exact test), Q value = 2.6e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
DEL PEAK 40(18Q22.1) MUTATED | 21 | 54 | 29 | 14 |
DEL PEAK 40(18Q22.1) WILD-TYPE | 10 | 5 | 18 | 40 |
P value = 2.76e-07 (Fisher's exact test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 62 | 80 |
DEL PEAK 40(18Q22.1) MUTATED | 15 | 50 | 53 |
DEL PEAK 40(18Q22.1) WILD-TYPE | 34 | 12 | 27 |
P value = 1.38e-13 (Fisher's exact test), Q value = 9e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 42(20P12.1) MUTATED | 61 | 12 | 0 | 6 |
DEL PEAK 42(20P12.1) WILD-TYPE | 109 | 175 | 32 | 18 |
P value = 0.00015 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 59 | 47 | 54 |
DEL PEAK 42(20P12.1) MUTATED | 8 | 24 | 7 | 4 |
DEL PEAK 42(20P12.1) WILD-TYPE | 23 | 35 | 40 | 50 |
P value = 3.37e-09 (Fisher's exact test), Q value = 2.1e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 43(21Q11.2) MUTATED | 72 | 30 | 18 | 5 |
DEL PEAK 43(21Q11.2) WILD-TYPE | 98 | 157 | 14 | 19 |
P value = 0.000428 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 31 | 62 | 30 | 23 |
DEL PEAK 44(22Q13.32) MUTATED | 8 | 34 | 4 | 10 |
DEL PEAK 44(22Q13.32) WILD-TYPE | 23 | 28 | 26 | 13 |
P value = 9.76e-13 (Fisher's exact test), Q value = 6.3e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 170 | 187 | 32 | 24 |
DEL PEAK 44(22Q13.32) MUTATED | 85 | 28 | 17 | 8 |
DEL PEAK 44(22Q13.32) WILD-TYPE | 85 | 159 | 15 | 16 |
-
Copy number data file = All Lesions File (all_lesions.conf_##.txt, where ## is the confidence level). The all lesions file is from GISTIC pipeline and summarizes the results from the GISTIC run. It contains data about the significant regions of amplification and deletion as well as which samples are amplified or deleted in each of these regions. The identified regions are listed down the first column, and the samples are listed across the first row, starting in column 10.
-
Molecular subtype file = COAD-TP.transferedmergedcluster.txt
-
Number of patients = 413
-
Number of copy number variation regions = 68
-
Number of molecular subtypes = 10
-
Exclude regions that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
This is an experimental feature. The full results of the analysis summarized in this report can be downloaded from the TCGA Data Coordination Center.