This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 40 focal events and 12 molecular subtypes across 427 patients, 173 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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1q cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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2p cnv correlated to 'CN_CNMF'.
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2q cnv correlated to 'CN_CNMF'.
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3p cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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3q cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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4p cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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4q cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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5p cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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5q cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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6p cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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6q cnv correlated to 'CN_CNMF'.
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7p cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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7q cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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8p cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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8q cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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9p cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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9q cnv correlated to 'CN_CNMF'.
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10p cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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10q cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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11p cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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11q cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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13q cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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14q cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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15q cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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16p cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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16q cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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17p cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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17q cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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18p cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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18q cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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19p cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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19q cnv correlated to 'CN_CNMF'.
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20p cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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20q cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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21q cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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22q cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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xq cnv correlated to 'CN_CNMF'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
18p | 259 (61%) | 168 |
3.64e-10 (1.58e-07) |
1.1e-08 (4.67e-06) |
1.45e-37 (6.93e-35) |
2.34e-12 (1.05e-09) |
0.000604 (0.191) |
0.000561 (0.178) |
1.27e-19 (5.93e-17) |
3.47e-13 (1.58e-10) |
0.633 (1.00) |
0.0855 (1.00) |
1.68e-12 (7.54e-10) |
0.0594 (1.00) |
20q | 308 (72%) | 119 |
1e-10 (4.38e-08) |
4.1e-12 (1.83e-09) |
8.06e-38 (3.87e-35) |
3.36e-12 (1.5e-09) |
0.00142 (0.427) |
5.05e-05 (0.0179) |
1.42e-23 (6.7e-21) |
4.29e-20 (2.02e-17) |
0.903 (1.00) |
5.91e-05 (0.0208) |
1.43e-12 (6.48e-10) |
0.121 (1.00) |
14q | 162 (38%) | 265 |
0.000225 (0.0748) |
0.000141 (0.0476) |
2.77e-25 (1.31e-22) |
8.29e-06 (0.00313) |
0.00502 (1.00) |
0.107 (1.00) |
4.2e-11 (1.86e-08) |
2.3e-10 (1e-07) |
0.478 (1.00) |
0.000441 (0.143) |
1.81e-06 (0.000716) |
0.126 (1.00) |
17p | 247 (58%) | 180 |
5.28e-08 (2.2e-05) |
9.71e-08 (4e-05) |
2.59e-33 (1.24e-30) |
9.38e-12 (4.17e-09) |
0.00332 (0.937) |
8.59e-05 (0.0298) |
1.7e-14 (7.76e-12) |
1.33e-16 (6.15e-14) |
0.45 (1.00) |
0.0157 (1.00) |
5.59e-11 (2.46e-08) |
0.0549 (1.00) |
20p | 272 (64%) | 155 |
9.01e-06 (0.00338) |
6.33e-09 (2.68e-06) |
7.55e-22 (3.57e-19) |
1.51e-06 (6e-04) |
0.0176 (1.00) |
0.0376 (1.00) |
4.24e-13 (1.92e-10) |
7.32e-10 (3.16e-07) |
0.751 (1.00) |
0.000309 (0.102) |
7.66e-06 (0.00289) |
0.719 (1.00) |
22q | 148 (35%) | 279 |
0.000223 (0.0744) |
0.000316 (0.104) |
8.17e-19 (3.81e-16) |
8.46e-05 (0.0295) |
0.101 (1.00) |
0.58 (1.00) |
2e-08 (8.37e-06) |
1.47e-05 (0.00544) |
0.166 (1.00) |
0.000495 (0.159) |
5.66e-06 (0.00216) |
0.375 (1.00) |
4q | 130 (30%) | 297 |
4.51e-06 (0.00174) |
0.000717 (0.221) |
6.26e-18 (2.91e-15) |
1.5e-05 (0.00553) |
0.00938 (1.00) |
0.102 (1.00) |
3.41e-05 (0.0123) |
4.27e-07 (0.000173) |
0.2 (1.00) |
0.0023 (0.68) |
7.61e-06 (0.00288) |
0.317 (1.00) |
8p | 256 (60%) | 171 |
0.0891 (1.00) |
0.0132 (1.00) |
1.55e-24 (7.37e-22) |
0.000546 (0.174) |
0.000319 (0.104) |
4.32e-05 (0.0154) |
8.4e-08 (3.48e-05) |
2.26e-06 (0.000889) |
0.313 (1.00) |
0.167 (1.00) |
1.39e-05 (0.00513) |
0.165 (1.00) |
11p | 99 (23%) | 328 |
8.99e-05 (0.0311) |
2.69e-05 (0.00983) |
3.22e-13 (1.47e-10) |
5.82e-07 (0.000234) |
0.127 (1.00) |
0.107 (1.00) |
3.54e-05 (0.0127) |
8.56e-06 (0.00322) |
0.691 (1.00) |
0.026 (1.00) |
4.13e-06 (0.0016) |
0.169 (1.00) |
11q | 107 (25%) | 320 |
3.14e-06 (0.00122) |
7.47e-07 (0.000298) |
8.2e-15 (3.75e-12) |
1.32e-07 (5.41e-05) |
0.0939 (1.00) |
0.218 (1.00) |
1.76e-06 (7e-04) |
2.43e-06 (0.000953) |
0.84 (1.00) |
0.00507 (1.00) |
2.06e-07 (8.35e-05) |
0.273 (1.00) |
13q | 257 (60%) | 170 |
0.000138 (0.0469) |
0.000124 (0.0421) |
2.16e-29 (1.03e-26) |
0.00028 (0.0926) |
0.00594 (1.00) |
0.00834 (1.00) |
1.57e-10 (6.84e-08) |
3.29e-11 (1.46e-08) |
0.6 (1.00) |
0.0161 (1.00) |
1.33e-07 (5.42e-05) |
0.795 (1.00) |
18q | 266 (62%) | 161 |
3.12e-10 (1.35e-07) |
2.45e-09 (1.05e-06) |
4.1e-37 (1.96e-34) |
9.13e-12 (4.07e-09) |
0.00809 (1.00) |
0.00173 (0.519) |
5.35e-21 (2.52e-18) |
4.66e-15 (2.14e-12) |
0.45 (1.00) |
0.0607 (1.00) |
4.33e-11 (1.91e-08) |
0.241 (1.00) |
4p | 136 (32%) | 291 |
2.82e-05 (0.0102) |
0.00394 (1.00) |
3.57e-17 (1.65e-14) |
9.08e-05 (0.0313) |
0.0566 (1.00) |
0.0909 (1.00) |
7.17e-07 (0.000287) |
9.19e-08 (3.8e-05) |
0.595 (1.00) |
0.0468 (1.00) |
6.52e-06 (0.00248) |
0.65 (1.00) |
7p | 234 (55%) | 193 |
0.0062 (1.00) |
0.00107 (0.326) |
1.94e-15 (8.94e-13) |
0.000798 (0.246) |
0.000462 (0.149) |
0.0159 (1.00) |
3.75e-09 (1.61e-06) |
4.45e-09 (1.9e-06) |
0.599 (1.00) |
0.00669 (1.00) |
4.46e-06 (0.00172) |
0.968 (1.00) |
16q | 124 (29%) | 303 |
4.54e-06 (0.00174) |
2.45e-05 (0.00897) |
2.67e-17 (1.24e-14) |
0.0891 (1.00) |
0.0368 (1.00) |
0.253 (1.00) |
0.000671 (0.208) |
0.000123 (0.0421) |
0.929 (1.00) |
0.00111 (0.337) |
0.000301 (0.0994) |
0.564 (1.00) |
15q | 156 (37%) | 271 |
0.00305 (0.872) |
0.00361 (1.00) |
2.82e-19 (1.32e-16) |
0.00251 (0.731) |
0.00263 (0.757) |
0.0369 (1.00) |
5.74e-09 (2.44e-06) |
7.51e-08 (3.12e-05) |
0.938 (1.00) |
4.24e-05 (0.0151) |
1.38e-05 (0.00512) |
0.28 (1.00) |
16p | 129 (30%) | 298 |
5.11e-06 (0.00195) |
1.37e-05 (0.00509) |
9.76e-18 (4.53e-15) |
0.0282 (1.00) |
0.0449 (1.00) |
0.193 (1.00) |
0.000653 (0.203) |
8.48e-05 (0.0295) |
0.695 (1.00) |
0.00176 (0.525) |
0.0021 (0.622) |
0.531 (1.00) |
17q | 136 (32%) | 291 |
0.00556 (1.00) |
0.101 (1.00) |
1.61e-12 (7.25e-10) |
0.000627 (0.197) |
0.145 (1.00) |
0.0265 (1.00) |
1.99e-08 (8.37e-06) |
5.48e-07 (0.000221) |
0.319 (1.00) |
0.124 (1.00) |
0.000449 (0.146) |
0.045 (1.00) |
6p | 112 (26%) | 315 |
0.108 (1.00) |
0.000232 (0.0769) |
7.15e-07 (0.000287) |
0.0217 (1.00) |
0.118 (1.00) |
0.457 (1.00) |
0.0069 (1.00) |
0.000496 (0.159) |
0.696 (1.00) |
0.0277 (1.00) |
0.000107 (0.0368) |
0.813 (1.00) |
7q | 214 (50%) | 213 |
0.00407 (1.00) |
0.00312 (0.887) |
8.54e-11 (3.74e-08) |
0.00736 (1.00) |
0.00519 (1.00) |
0.0162 (1.00) |
1.07e-07 (4.39e-05) |
4.02e-08 (1.68e-05) |
0.471 (1.00) |
0.00254 (0.736) |
1.13e-05 (0.00424) |
0.89 (1.00) |
10p | 96 (22%) | 331 |
0.00733 (1.00) |
0.0578 (1.00) |
7.54e-10 (3.25e-07) |
0.0217 (1.00) |
0.0595 (1.00) |
0.0233 (1.00) |
2.99e-06 (0.00117) |
4.44e-06 (0.00172) |
0.184 (1.00) |
0.000954 (0.291) |
2.08e-06 (0.000822) |
0.399 (1.00) |
10q | 86 (20%) | 341 |
0.0037 (1.00) |
0.0203 (1.00) |
8.43e-11 (3.7e-08) |
0.0516 (1.00) |
0.0789 (1.00) |
0.1 (1.00) |
2.74e-05 (0.00996) |
5.34e-05 (0.0189) |
0.471 (1.00) |
0.0131 (1.00) |
2.67e-06 (0.00104) |
0.639 (1.00) |
1p | 121 (28%) | 306 |
0.0144 (1.00) |
0.0228 (1.00) |
2.96e-13 (1.35e-10) |
0.00234 (0.688) |
0.0335 (1.00) |
0.112 (1.00) |
7e-05 (0.0245) |
5.02e-08 (2.09e-05) |
0.571 (1.00) |
0.0468 (1.00) |
0.00308 (0.878) |
0.025 (1.00) |
1q | 127 (30%) | 300 |
0.479 (1.00) |
0.308 (1.00) |
1.27e-08 (5.34e-06) |
0.0331 (1.00) |
0.0969 (1.00) |
0.0252 (1.00) |
0.00319 (0.902) |
2.34e-05 (0.00857) |
0.726 (1.00) |
0.0935 (1.00) |
6.73e-05 (0.0236) |
0.202 (1.00) |
5q | 113 (26%) | 314 |
0.348 (1.00) |
0.254 (1.00) |
3.85e-09 (1.64e-06) |
0.132 (1.00) |
0.069 (1.00) |
0.231 (1.00) |
0.000597 (0.189) |
1.57e-07 (6.41e-05) |
0.864 (1.00) |
0.296 (1.00) |
0.0047 (1.00) |
0.862 (1.00) |
9p | 123 (29%) | 304 |
0.149 (1.00) |
0.0228 (1.00) |
1.79e-07 (7.3e-05) |
0.0221 (1.00) |
0.00355 (0.996) |
0.304 (1.00) |
0.000642 (0.2) |
0.000493 (0.159) |
0.343 (1.00) |
0.355 (1.00) |
0.0127 (1.00) |
0.776 (1.00) |
19p | 105 (25%) | 322 |
0.324 (1.00) |
0.0257 (1.00) |
2.13e-07 (8.61e-05) |
0.1 (1.00) |
0.105 (1.00) |
0.107 (1.00) |
0.000219 (0.0735) |
0.000146 (0.0491) |
0.509 (1.00) |
0.03 (1.00) |
0.00841 (1.00) |
0.663 (1.00) |
21q | 138 (32%) | 289 |
0.00417 (1.00) |
0.00248 (0.724) |
4.94e-11 (2.18e-08) |
0.108 (1.00) |
0.146 (1.00) |
0.181 (1.00) |
0.00259 (0.748) |
0.00064 (0.2) |
0.318 (1.00) |
0.126 (1.00) |
0.000424 (0.138) |
0.556 (1.00) |
3p | 92 (22%) | 335 |
0.193 (1.00) |
0.0347 (1.00) |
1.63e-08 (6.85e-06) |
0.0982 (1.00) |
0.199 (1.00) |
0.0794 (1.00) |
0.000636 (0.2) |
0.00623 (1.00) |
0.663 (1.00) |
0.195 (1.00) |
0.00355 (0.996) |
0.141 (1.00) |
3q | 92 (22%) | 335 |
0.0907 (1.00) |
0.0242 (1.00) |
3.11e-09 (1.34e-06) |
0.091 (1.00) |
0.154 (1.00) |
0.398 (1.00) |
0.000151 (0.0506) |
0.00279 (0.801) |
0.239 (1.00) |
0.258 (1.00) |
0.00508 (1.00) |
0.276 (1.00) |
5p | 117 (27%) | 310 |
0.295 (1.00) |
0.177 (1.00) |
2.32e-06 (0.00091) |
0.49 (1.00) |
0.174 (1.00) |
0.774 (1.00) |
0.0355 (1.00) |
1.24e-05 (0.00463) |
0.656 (1.00) |
0.325 (1.00) |
0.0125 (1.00) |
0.675 (1.00) |
8q | 235 (55%) | 192 |
0.766 (1.00) |
0.0713 (1.00) |
1.81e-19 (8.47e-17) |
0.00489 (1.00) |
0.0204 (1.00) |
0.000941 (0.288) |
0.0014 (0.422) |
4.89e-05 (0.0174) |
0.951 (1.00) |
0.263 (1.00) |
0.00728 (1.00) |
0.026 (1.00) |
2p | 80 (19%) | 347 |
0.037 (1.00) |
0.0815 (1.00) |
2.88e-05 (0.0104) |
0.017 (1.00) |
0.0618 (1.00) |
0.301 (1.00) |
0.00531 (1.00) |
0.0113 (1.00) |
0.592 (1.00) |
0.0474 (1.00) |
0.149 (1.00) |
0.00737 (1.00) |
2q | 77 (18%) | 350 |
0.11 (1.00) |
0.0705 (1.00) |
2.89e-05 (0.0104) |
0.022 (1.00) |
0.2 (1.00) |
0.613 (1.00) |
0.0207 (1.00) |
0.0358 (1.00) |
0.745 (1.00) |
0.125 (1.00) |
0.282 (1.00) |
0.249 (1.00) |
6q | 116 (27%) | 311 |
0.102 (1.00) |
0.00233 (0.688) |
3.24e-05 (0.0116) |
0.0614 (1.00) |
0.393 (1.00) |
0.181 (1.00) |
0.141 (1.00) |
0.0266 (1.00) |
0.797 (1.00) |
0.0614 (1.00) |
0.000853 (0.262) |
0.817 (1.00) |
9q | 114 (27%) | 313 |
0.343 (1.00) |
0.113 (1.00) |
4.85e-06 (0.00186) |
0.0278 (1.00) |
0.00411 (1.00) |
0.471 (1.00) |
0.00238 (0.698) |
0.00553 (1.00) |
0.23 (1.00) |
0.431 (1.00) |
0.0155 (1.00) |
0.49 (1.00) |
19q | 108 (25%) | 319 |
0.106 (1.00) |
0.0258 (1.00) |
0.000102 (0.0353) |
0.156 (1.00) |
0.0356 (1.00) |
0.028 (1.00) |
0.00533 (1.00) |
0.00123 (0.372) |
0.711 (1.00) |
0.0375 (1.00) |
0.0525 (1.00) |
0.511 (1.00) |
xq | 114 (27%) | 313 |
0.00682 (1.00) |
0.0626 (1.00) |
0.000112 (0.0383) |
0.216 (1.00) |
0.0171 (1.00) |
0.00791 (1.00) |
0.102 (1.00) |
0.167 (1.00) |
0.0219 (1.00) |
0.475 (1.00) |
0.0167 (1.00) |
0.0741 (1.00) |
12p | 131 (31%) | 296 |
0.985 (1.00) |
0.205 (1.00) |
0.142 (1.00) |
0.81 (1.00) |
0.239 (1.00) |
0.661 (1.00) |
0.177 (1.00) |
0.109 (1.00) |
0.359 (1.00) |
0.268 (1.00) |
0.599 (1.00) |
0.559 (1.00) |
12q | 127 (30%) | 300 |
0.875 (1.00) |
0.521 (1.00) |
0.265 (1.00) |
0.759 (1.00) |
0.199 (1.00) |
0.62 (1.00) |
0.123 (1.00) |
0.103 (1.00) |
0.215 (1.00) |
0.219 (1.00) |
0.558 (1.00) |
0.121 (1.00) |
P value = 2.96e-13 (Fisher's exact test), Q value = 1.3e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
1P MUTATED | 83 | 27 | 11 |
1P WILD-TYPE | 88 | 168 | 50 |
P value = 7e-05 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
1P MUTATED | 53 | 22 | 40 |
1P WILD-TYPE | 78 | 112 | 104 |
P value = 5.02e-08 (Fisher's exact test), Q value = 2.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
1P MUTATED | 47 | 59 | 9 |
1P WILD-TYPE | 118 | 84 | 92 |
P value = 1.27e-08 (Fisher's exact test), Q value = 5.3e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
1Q MUTATED | 78 | 33 | 16 |
1Q WILD-TYPE | 93 | 162 | 45 |
P value = 2.34e-05 (Fisher's exact test), Q value = 0.0086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
1Q MUTATED | 49 | 56 | 13 |
1Q WILD-TYPE | 116 | 87 | 88 |
P value = 6.73e-05 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
1Q MUTATED | 34 | 10 | 22 |
1Q WILD-TYPE | 45 | 68 | 41 |
P value = 2.88e-05 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
2P MUTATED | 50 | 21 | 9 |
2P WILD-TYPE | 121 | 174 | 52 |
P value = 2.89e-05 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
2Q MUTATED | 48 | 19 | 10 |
2Q WILD-TYPE | 123 | 176 | 51 |
P value = 1.63e-08 (Fisher's exact test), Q value = 6.9e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
3P MUTATED | 62 | 23 | 7 |
3P WILD-TYPE | 109 | 172 | 54 |
P value = 0.000636 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
3P MUTATED | 43 | 18 | 29 |
3P WILD-TYPE | 88 | 116 | 115 |
P value = 3.11e-09 (Fisher's exact test), Q value = 1.3e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
3Q MUTATED | 63 | 21 | 8 |
3Q WILD-TYPE | 108 | 174 | 53 |
P value = 0.000151 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
3Q MUTATED | 45 | 18 | 27 |
3Q WILD-TYPE | 86 | 116 | 117 |
P value = 2.82e-05 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
4P MUTATED | 8 | 29 | 1 | 10 |
4P WILD-TYPE | 27 | 32 | 28 | 11 |
P value = 3.57e-17 (Fisher's exact test), Q value = 1.6e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
4P MUTATED | 95 | 28 | 13 |
4P WILD-TYPE | 76 | 167 | 48 |
P value = 9.08e-05 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 88 | 68 |
4P MUTATED | 50 | 14 | 21 |
4P WILD-TYPE | 64 | 74 | 47 |
P value = 7.17e-07 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
4P MUTATED | 62 | 23 | 48 |
4P WILD-TYPE | 69 | 111 | 96 |
P value = 9.19e-08 (Fisher's exact test), Q value = 3.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
4P MUTATED | 57 | 64 | 12 |
4P WILD-TYPE | 108 | 79 | 89 |
P value = 6.52e-06 (Fisher's exact test), Q value = 0.0025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
4P MUTATED | 34 | 8 | 22 |
4P WILD-TYPE | 45 | 70 | 41 |
P value = 4.51e-06 (Fisher's exact test), Q value = 0.0017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
4Q MUTATED | 7 | 30 | 1 | 11 |
4Q WILD-TYPE | 28 | 31 | 28 | 10 |
P value = 0.000717 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 43 | 47 |
4Q MUTATED | 23 | 5 | 21 |
4Q WILD-TYPE | 33 | 38 | 26 |
P value = 6.26e-18 (Fisher's exact test), Q value = 2.9e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
4Q MUTATED | 93 | 25 | 12 |
4Q WILD-TYPE | 78 | 170 | 49 |
P value = 1.5e-05 (Fisher's exact test), Q value = 0.0055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 88 | 68 |
4Q MUTATED | 48 | 11 | 20 |
4Q WILD-TYPE | 66 | 77 | 48 |
P value = 3.41e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
4Q MUTATED | 55 | 23 | 48 |
4Q WILD-TYPE | 76 | 111 | 96 |
P value = 4.27e-07 (Fisher's exact test), Q value = 0.00017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
4Q MUTATED | 57 | 58 | 11 |
4Q WILD-TYPE | 108 | 85 | 90 |
P value = 7.61e-06 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
4Q MUTATED | 29 | 6 | 22 |
4Q WILD-TYPE | 50 | 72 | 41 |
P value = 2.32e-06 (Fisher's exact test), Q value = 0.00091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
5P MUTATED | 67 | 31 | 19 |
5P WILD-TYPE | 104 | 164 | 42 |
P value = 1.24e-05 (Fisher's exact test), Q value = 0.0046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
5P MUTATED | 51 | 52 | 11 |
5P WILD-TYPE | 114 | 91 | 90 |
P value = 3.85e-09 (Fisher's exact test), Q value = 1.6e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
5Q MUTATED | 70 | 25 | 18 |
5Q WILD-TYPE | 101 | 170 | 43 |
P value = 0.000597 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
5Q MUTATED | 50 | 23 | 38 |
5Q WILD-TYPE | 81 | 111 | 106 |
P value = 1.57e-07 (Fisher's exact test), Q value = 6.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
5Q MUTATED | 49 | 54 | 8 |
5Q WILD-TYPE | 116 | 89 | 93 |
P value = 0.000232 (Fisher's exact test), Q value = 0.077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 43 | 47 |
6P MUTATED | 8 | 8 | 23 |
6P WILD-TYPE | 48 | 35 | 24 |
P value = 7.15e-07 (Fisher's exact test), Q value = 0.00029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
6P MUTATED | 68 | 30 | 14 |
6P WILD-TYPE | 103 | 165 | 47 |
P value = 0.000496 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
6P MUTATED | 46 | 49 | 13 |
6P WILD-TYPE | 119 | 94 | 88 |
P value = 0.000107 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
6P MUTATED | 31 | 8 | 16 |
6P WILD-TYPE | 48 | 70 | 47 |
P value = 3.24e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
6Q MUTATED | 66 | 34 | 16 |
6Q WILD-TYPE | 105 | 161 | 45 |
P value = 1.94e-15 (Fisher's exact test), Q value = 8.9e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
7P MUTATED | 129 | 66 | 39 |
7P WILD-TYPE | 42 | 129 | 22 |
P value = 0.000798 (Fisher's exact test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 88 | 68 |
7P MUTATED | 82 | 41 | 37 |
7P WILD-TYPE | 32 | 47 | 31 |
P value = 0.000462 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 127 | 26 | 94 |
7P MUTATED | 53 | 63 | 19 | 38 |
7P WILD-TYPE | 25 | 64 | 7 | 56 |
P value = 3.75e-09 (Fisher's exact test), Q value = 1.6e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
7P MUTATED | 99 | 52 | 73 |
7P WILD-TYPE | 32 | 82 | 71 |
P value = 4.45e-09 (Fisher's exact test), Q value = 1.9e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
7P MUTATED | 84 | 105 | 35 |
7P WILD-TYPE | 81 | 38 | 66 |
P value = 4.46e-06 (Fisher's exact test), Q value = 0.0017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
7P MUTATED | 58 | 28 | 41 |
7P WILD-TYPE | 21 | 50 | 22 |
P value = 8.54e-11 (Fisher's exact test), Q value = 3.7e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
7Q MUTATED | 116 | 64 | 34 |
7Q WILD-TYPE | 55 | 131 | 27 |
P value = 1.07e-07 (Fisher's exact test), Q value = 4.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
7Q MUTATED | 91 | 48 | 66 |
7Q WILD-TYPE | 40 | 86 | 78 |
P value = 4.02e-08 (Fisher's exact test), Q value = 1.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
7Q MUTATED | 74 | 98 | 33 |
7Q WILD-TYPE | 91 | 45 | 68 |
P value = 1.13e-05 (Fisher's exact test), Q value = 0.0042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
7Q MUTATED | 52 | 25 | 41 |
7Q WILD-TYPE | 27 | 53 | 22 |
P value = 1.55e-24 (Fisher's exact test), Q value = 7.4e-22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
8P MUTATED | 128 | 69 | 59 |
8P WILD-TYPE | 43 | 126 | 2 |
P value = 0.000546 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 88 | 68 |
8P MUTATED | 88 | 46 | 40 |
8P WILD-TYPE | 26 | 42 | 28 |
P value = 0.000319 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 127 | 26 | 94 |
8P MUTATED | 59 | 71 | 16 | 41 |
8P WILD-TYPE | 19 | 56 | 10 | 53 |
P value = 4.32e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 56 | 63 | 180 |
8P MUTATED | 13 | 21 | 50 | 103 |
8P WILD-TYPE | 13 | 35 | 13 | 77 |
P value = 8.4e-08 (Fisher's exact test), Q value = 3.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
8P MUTATED | 103 | 62 | 78 |
8P WILD-TYPE | 28 | 72 | 66 |
P value = 2.26e-06 (Fisher's exact test), Q value = 0.00089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
8P MUTATED | 92 | 107 | 44 |
8P WILD-TYPE | 73 | 36 | 57 |
P value = 1.39e-05 (Fisher's exact test), Q value = 0.0051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
8P MUTATED | 60 | 33 | 46 |
8P WILD-TYPE | 19 | 45 | 17 |
P value = 1.81e-19 (Fisher's exact test), Q value = 8.5e-17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
8Q MUTATED | 109 | 68 | 58 |
8Q WILD-TYPE | 62 | 127 | 3 |
P value = 4.89e-05 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
8Q MUTATED | 86 | 97 | 40 |
8Q WILD-TYPE | 79 | 46 | 61 |
P value = 1.79e-07 (Fisher's exact test), Q value = 7.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
9P MUTATED | 75 | 36 | 12 |
9P WILD-TYPE | 96 | 159 | 49 |
P value = 0.000642 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
9P MUTATED | 53 | 26 | 38 |
9P WILD-TYPE | 78 | 108 | 106 |
P value = 0.000493 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
9P MUTATED | 42 | 57 | 18 |
9P WILD-TYPE | 123 | 86 | 83 |
P value = 4.85e-06 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
9Q MUTATED | 68 | 34 | 12 |
9Q WILD-TYPE | 103 | 161 | 49 |
P value = 7.54e-10 (Fisher's exact test), Q value = 3.2e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
10P MUTATED | 63 | 18 | 15 |
10P WILD-TYPE | 108 | 177 | 46 |
P value = 2.99e-06 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
10P MUTATED | 50 | 18 | 25 |
10P WILD-TYPE | 81 | 116 | 119 |
P value = 4.44e-06 (Fisher's exact test), Q value = 0.0017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
10P MUTATED | 30 | 52 | 11 |
10P WILD-TYPE | 135 | 91 | 90 |
P value = 2.08e-06 (Fisher's exact test), Q value = 0.00082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
10P MUTATED | 33 | 6 | 18 |
10P WILD-TYPE | 46 | 72 | 45 |
P value = 8.43e-11 (Fisher's exact test), Q value = 3.7e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
10Q MUTATED | 58 | 13 | 15 |
10Q WILD-TYPE | 113 | 182 | 46 |
P value = 2.74e-05 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
10Q MUTATED | 44 | 15 | 25 |
10Q WILD-TYPE | 87 | 119 | 119 |
P value = 5.34e-05 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
10Q MUTATED | 30 | 45 | 9 |
10Q WILD-TYPE | 135 | 98 | 92 |
P value = 2.67e-06 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
10Q MUTATED | 29 | 4 | 15 |
10Q WILD-TYPE | 50 | 74 | 48 |
P value = 8.99e-05 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
11P MUTATED | 4 | 19 | 1 | 11 |
11P WILD-TYPE | 31 | 42 | 28 | 10 |
P value = 2.69e-05 (Fisher's exact test), Q value = 0.0098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 43 | 47 |
11P MUTATED | 12 | 2 | 21 |
11P WILD-TYPE | 44 | 41 | 26 |
P value = 3.22e-13 (Fisher's exact test), Q value = 1.5e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
11P MUTATED | 72 | 19 | 8 |
11P WILD-TYPE | 99 | 176 | 53 |
P value = 5.82e-07 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 88 | 68 |
11P MUTATED | 43 | 6 | 14 |
11P WILD-TYPE | 71 | 82 | 54 |
P value = 3.54e-05 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
11P MUTATED | 44 | 15 | 38 |
11P WILD-TYPE | 87 | 119 | 106 |
P value = 8.56e-06 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
11P MUTATED | 42 | 47 | 8 |
11P WILD-TYPE | 123 | 96 | 93 |
P value = 4.13e-06 (Fisher's exact test), Q value = 0.0016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
11P MUTATED | 26 | 4 | 20 |
11P WILD-TYPE | 53 | 74 | 43 |
P value = 3.14e-06 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
11Q MUTATED | 3 | 22 | 1 | 12 |
11Q WILD-TYPE | 32 | 39 | 28 | 9 |
P value = 7.47e-07 (Fisher's exact test), Q value = 3e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 43 | 47 |
11Q MUTATED | 14 | 1 | 23 |
11Q WILD-TYPE | 42 | 42 | 24 |
P value = 8.2e-15 (Fisher's exact test), Q value = 3.8e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
11Q MUTATED | 77 | 18 | 12 |
11Q WILD-TYPE | 94 | 177 | 49 |
P value = 1.32e-07 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 88 | 68 |
11Q MUTATED | 47 | 7 | 14 |
11Q WILD-TYPE | 67 | 81 | 54 |
P value = 1.76e-06 (Fisher's exact test), Q value = 7e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
11Q MUTATED | 49 | 15 | 41 |
11Q WILD-TYPE | 82 | 119 | 103 |
P value = 2.43e-06 (Fisher's exact test), Q value = 0.00095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
11Q MUTATED | 44 | 52 | 9 |
11Q WILD-TYPE | 121 | 91 | 92 |
P value = 2.06e-07 (Fisher's exact test), Q value = 8.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
11Q MUTATED | 29 | 4 | 23 |
11Q WILD-TYPE | 50 | 74 | 40 |
P value = 0.000138 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
13Q MUTATED | 15 | 48 | 11 | 15 |
13Q WILD-TYPE | 20 | 13 | 18 | 6 |
P value = 0.000124 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 43 | 47 |
13Q MUTATED | 38 | 15 | 36 |
13Q WILD-TYPE | 18 | 28 | 11 |
P value = 2.16e-29 (Fisher's exact test), Q value = 1e-26
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
13Q MUTATED | 154 | 66 | 37 |
13Q WILD-TYPE | 17 | 129 | 24 |
P value = 0.00028 (Fisher's exact test), Q value = 0.093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 88 | 68 |
13Q MUTATED | 85 | 42 | 38 |
13Q WILD-TYPE | 29 | 46 | 30 |
P value = 1.57e-10 (Fisher's exact test), Q value = 6.8e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
13Q MUTATED | 105 | 54 | 87 |
13Q WILD-TYPE | 26 | 80 | 57 |
P value = 3.29e-11 (Fisher's exact test), Q value = 1.5e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
13Q MUTATED | 101 | 111 | 34 |
13Q WILD-TYPE | 64 | 32 | 67 |
P value = 1.33e-07 (Fisher's exact test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
13Q MUTATED | 62 | 29 | 45 |
13Q WILD-TYPE | 17 | 49 | 18 |
P value = 0.000225 (Fisher's exact test), Q value = 0.075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
14Q MUTATED | 9 | 35 | 5 | 12 |
14Q WILD-TYPE | 26 | 26 | 24 | 9 |
P value = 0.000141 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 43 | 47 |
14Q MUTATED | 24 | 8 | 29 |
14Q WILD-TYPE | 32 | 35 | 18 |
P value = 2.77e-25 (Fisher's exact test), Q value = 1.3e-22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
14Q MUTATED | 116 | 31 | 15 |
14Q WILD-TYPE | 55 | 164 | 46 |
P value = 8.29e-06 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 88 | 68 |
14Q MUTATED | 60 | 19 | 19 |
14Q WILD-TYPE | 54 | 69 | 49 |
P value = 4.2e-11 (Fisher's exact test), Q value = 1.9e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
14Q MUTATED | 75 | 23 | 59 |
14Q WILD-TYPE | 56 | 111 | 85 |
P value = 2.3e-10 (Fisher's exact test), Q value = 1e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
14Q MUTATED | 69 | 75 | 13 |
14Q WILD-TYPE | 96 | 68 | 88 |
P value = 0.000441 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 80 | 174 | 143 |
14Q MUTATED | 16 | 74 | 63 |
14Q WILD-TYPE | 64 | 100 | 80 |
P value = 1.81e-06 (Fisher's exact test), Q value = 0.00072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
14Q MUTATED | 42 | 12 | 26 |
14Q WILD-TYPE | 37 | 66 | 37 |
P value = 2.82e-19 (Fisher's exact test), Q value = 1.3e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
15Q MUTATED | 106 | 32 | 18 |
15Q WILD-TYPE | 65 | 163 | 43 |
P value = 5.74e-09 (Fisher's exact test), Q value = 2.4e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
15Q MUTATED | 74 | 27 | 53 |
15Q WILD-TYPE | 57 | 107 | 91 |
P value = 7.51e-08 (Fisher's exact test), Q value = 3.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
15Q MUTATED | 66 | 72 | 16 |
15Q WILD-TYPE | 99 | 71 | 85 |
P value = 4.24e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 80 | 174 | 143 |
15Q MUTATED | 14 | 66 | 67 |
15Q WILD-TYPE | 66 | 108 | 76 |
P value = 1.38e-05 (Fisher's exact test), Q value = 0.0051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
15Q MUTATED | 38 | 13 | 30 |
15Q WILD-TYPE | 41 | 65 | 33 |
P value = 5.11e-06 (Fisher's exact test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
16P MUTATED | 6 | 26 | 2 | 14 |
16P WILD-TYPE | 29 | 35 | 27 | 7 |
P value = 1.37e-05 (Fisher's exact test), Q value = 0.0051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 43 | 47 |
16P MUTATED | 16 | 5 | 27 |
16P WILD-TYPE | 40 | 38 | 20 |
P value = 9.76e-18 (Fisher's exact test), Q value = 4.5e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
16P MUTATED | 92 | 24 | 13 |
16P WILD-TYPE | 79 | 171 | 48 |
P value = 0.000653 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
16P MUTATED | 53 | 26 | 48 |
16P WILD-TYPE | 78 | 108 | 96 |
P value = 8.48e-05 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
16P MUTATED | 56 | 56 | 15 |
16P WILD-TYPE | 109 | 87 | 86 |
P value = 4.54e-06 (Fisher's exact test), Q value = 0.0017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
16Q MUTATED | 5 | 24 | 2 | 14 |
16Q WILD-TYPE | 30 | 37 | 27 | 7 |
P value = 2.45e-05 (Fisher's exact test), Q value = 0.009
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 43 | 47 |
16Q MUTATED | 16 | 4 | 25 |
16Q WILD-TYPE | 40 | 39 | 22 |
P value = 2.67e-17 (Fisher's exact test), Q value = 1.2e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
16Q MUTATED | 88 | 21 | 15 |
16Q WILD-TYPE | 83 | 174 | 46 |
P value = 0.000671 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
16Q MUTATED | 50 | 24 | 47 |
16Q WILD-TYPE | 81 | 110 | 97 |
P value = 0.000123 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
16Q MUTATED | 54 | 53 | 14 |
16Q WILD-TYPE | 111 | 90 | 87 |
P value = 0.000301 (Fisher's exact test), Q value = 0.099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
16Q MUTATED | 31 | 10 | 22 |
16Q WILD-TYPE | 48 | 68 | 41 |
P value = 5.28e-08 (Fisher's exact test), Q value = 2.2e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
17P MUTATED | 11 | 49 | 9 | 17 |
17P WILD-TYPE | 24 | 12 | 20 | 4 |
P value = 9.71e-08 (Fisher's exact test), Q value = 4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 43 | 47 |
17P MUTATED | 36 | 11 | 39 |
17P WILD-TYPE | 20 | 32 | 8 |
P value = 2.59e-33 (Fisher's exact test), Q value = 1.2e-30
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
17P MUTATED | 150 | 54 | 43 |
17P WILD-TYPE | 21 | 141 | 18 |
P value = 9.38e-12 (Fisher's exact test), Q value = 4.2e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 88 | 68 |
17P MUTATED | 94 | 32 | 32 |
17P WILD-TYPE | 20 | 56 | 36 |
P value = 8.59e-05 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 56 | 63 | 180 |
17P MUTATED | 8 | 22 | 46 | 107 |
17P WILD-TYPE | 18 | 34 | 17 | 73 |
P value = 1.7e-14 (Fisher's exact test), Q value = 7.8e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
17P MUTATED | 106 | 45 | 87 |
17P WILD-TYPE | 25 | 89 | 57 |
P value = 1.33e-16 (Fisher's exact test), Q value = 6.1e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
17P MUTATED | 98 | 114 | 26 |
17P WILD-TYPE | 67 | 29 | 75 |
P value = 5.59e-11 (Fisher's exact test), Q value = 2.5e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
17P MUTATED | 66 | 24 | 39 |
17P WILD-TYPE | 13 | 54 | 24 |
P value = 1.61e-12 (Fisher's exact test), Q value = 7.3e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
17Q MUTATED | 87 | 30 | 19 |
17Q WILD-TYPE | 84 | 165 | 42 |
P value = 0.000627 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 88 | 68 |
17Q MUTATED | 52 | 18 | 20 |
17Q WILD-TYPE | 62 | 70 | 48 |
P value = 1.99e-08 (Fisher's exact test), Q value = 8.4e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
17Q MUTATED | 67 | 23 | 44 |
17Q WILD-TYPE | 64 | 111 | 100 |
P value = 5.48e-07 (Fisher's exact test), Q value = 0.00022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
17Q MUTATED | 52 | 67 | 15 |
17Q WILD-TYPE | 113 | 76 | 86 |
P value = 0.000449 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
17Q MUTATED | 37 | 14 | 23 |
17Q WILD-TYPE | 42 | 64 | 40 |
P value = 3.64e-10 (Fisher's exact test), Q value = 1.6e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
18P MUTATED | 9 | 51 | 8 | 16 |
18P WILD-TYPE | 26 | 10 | 21 | 5 |
P value = 1.1e-08 (Fisher's exact test), Q value = 4.7e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 43 | 47 |
18P MUTATED | 37 | 9 | 38 |
18P WILD-TYPE | 19 | 34 | 9 |
P value = 1.45e-37 (Fisher's exact test), Q value = 6.9e-35
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
18P MUTATED | 157 | 57 | 45 |
18P WILD-TYPE | 14 | 138 | 16 |
P value = 2.34e-12 (Fisher's exact test), Q value = 1.1e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 88 | 68 |
18P MUTATED | 99 | 36 | 35 |
18P WILD-TYPE | 15 | 52 | 33 |
P value = 0.000604 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 127 | 26 | 94 |
18P MUTATED | 52 | 85 | 17 | 39 |
18P WILD-TYPE | 26 | 42 | 9 | 55 |
P value = 0.000561 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 56 | 63 | 180 |
18P MUTATED | 9 | 24 | 44 | 116 |
18P WILD-TYPE | 17 | 32 | 19 | 64 |
P value = 1.27e-19 (Fisher's exact test), Q value = 5.9e-17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
18P MUTATED | 117 | 48 | 85 |
18P WILD-TYPE | 14 | 86 | 59 |
P value = 3.47e-13 (Fisher's exact test), Q value = 1.6e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
18P MUTATED | 98 | 117 | 35 |
18P WILD-TYPE | 67 | 26 | 66 |
P value = 1.68e-12 (Fisher's exact test), Q value = 7.5e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
18P MUTATED | 69 | 25 | 43 |
18P WILD-TYPE | 10 | 53 | 20 |
P value = 3.12e-10 (Fisher's exact test), Q value = 1.4e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
18Q MUTATED | 9 | 52 | 9 | 16 |
18Q WILD-TYPE | 26 | 9 | 20 | 5 |
P value = 2.45e-09 (Fisher's exact test), Q value = 1.1e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 43 | 47 |
18Q MUTATED | 38 | 9 | 39 |
18Q WILD-TYPE | 18 | 34 | 8 |
P value = 4.1e-37 (Fisher's exact test), Q value = 2e-34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
18Q MUTATED | 157 | 60 | 49 |
18Q WILD-TYPE | 14 | 135 | 12 |
P value = 9.13e-12 (Fisher's exact test), Q value = 4.1e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 88 | 68 |
18Q MUTATED | 100 | 38 | 37 |
18Q WILD-TYPE | 14 | 50 | 31 |
P value = 5.35e-21 (Fisher's exact test), Q value = 2.5e-18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
18Q MUTATED | 119 | 48 | 89 |
18Q WILD-TYPE | 12 | 86 | 55 |
P value = 4.66e-15 (Fisher's exact test), Q value = 2.1e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
18Q MUTATED | 100 | 121 | 35 |
18Q WILD-TYPE | 65 | 22 | 66 |
P value = 4.33e-11 (Fisher's exact test), Q value = 1.9e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
18Q MUTATED | 69 | 28 | 44 |
18Q WILD-TYPE | 10 | 50 | 19 |
P value = 2.13e-07 (Fisher's exact test), Q value = 8.6e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
19P MUTATED | 64 | 25 | 16 |
19P WILD-TYPE | 107 | 170 | 45 |
P value = 0.000219 (Fisher's exact test), Q value = 0.073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
19P MUTATED | 49 | 22 | 30 |
19P WILD-TYPE | 82 | 112 | 114 |
P value = 0.000146 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
19P MUTATED | 39 | 50 | 12 |
19P WILD-TYPE | 126 | 93 | 89 |
P value = 0.000102 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
19Q MUTATED | 62 | 33 | 13 |
19Q WILD-TYPE | 109 | 162 | 48 |
P value = 9.01e-06 (Fisher's exact test), Q value = 0.0034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
20P MUTATED | 13 | 51 | 15 | 17 |
20P WILD-TYPE | 22 | 10 | 14 | 4 |
P value = 6.33e-09 (Fisher's exact test), Q value = 2.7e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 43 | 47 |
20P MUTATED | 45 | 12 | 39 |
20P WILD-TYPE | 11 | 31 | 8 |
P value = 7.55e-22 (Fisher's exact test), Q value = 3.6e-19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
20P MUTATED | 150 | 78 | 44 |
20P WILD-TYPE | 21 | 117 | 17 |
P value = 1.51e-06 (Fisher's exact test), Q value = 6e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 88 | 68 |
20P MUTATED | 92 | 43 | 36 |
20P WILD-TYPE | 22 | 45 | 32 |
P value = 4.24e-13 (Fisher's exact test), Q value = 1.9e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
20P MUTATED | 110 | 54 | 97 |
20P WILD-TYPE | 21 | 80 | 47 |
P value = 7.32e-10 (Fisher's exact test), Q value = 3.2e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
20P MUTATED | 109 | 113 | 39 |
20P WILD-TYPE | 56 | 30 | 62 |
P value = 0.000309 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 80 | 174 | 143 |
20P MUTATED | 36 | 114 | 103 |
20P WILD-TYPE | 44 | 60 | 40 |
P value = 7.66e-06 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
20P MUTATED | 61 | 33 | 46 |
20P WILD-TYPE | 18 | 45 | 17 |
P value = 1e-10 (Fisher's exact test), Q value = 4.4e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
20Q MUTATED | 13 | 59 | 16 | 18 |
20Q WILD-TYPE | 22 | 2 | 13 | 3 |
P value = 4.1e-12 (Fisher's exact test), Q value = 1.8e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 43 | 47 |
20Q MUTATED | 50 | 13 | 43 |
20Q WILD-TYPE | 6 | 30 | 4 |
P value = 8.06e-38 (Fisher's exact test), Q value = 3.9e-35
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
20Q MUTATED | 169 | 85 | 54 |
20Q WILD-TYPE | 2 | 110 | 7 |
P value = 3.36e-12 (Fisher's exact test), Q value = 1.5e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 88 | 68 |
20Q MUTATED | 107 | 46 | 43 |
20Q WILD-TYPE | 7 | 42 | 25 |
P value = 5.05e-05 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 26 | 56 | 63 | 180 |
20Q MUTATED | 13 | 29 | 54 | 133 |
20Q WILD-TYPE | 13 | 27 | 9 | 47 |
P value = 1.42e-23 (Fisher's exact test), Q value = 6.7e-21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
20Q MUTATED | 128 | 60 | 106 |
20Q WILD-TYPE | 3 | 74 | 38 |
P value = 4.29e-20 (Fisher's exact test), Q value = 2e-17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
20Q MUTATED | 120 | 134 | 40 |
20Q WILD-TYPE | 45 | 9 | 61 |
P value = 5.91e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 80 | 174 | 143 |
20Q MUTATED | 43 | 126 | 117 |
20Q WILD-TYPE | 37 | 48 | 26 |
P value = 1.43e-12 (Fisher's exact test), Q value = 6.5e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
20Q MUTATED | 74 | 34 | 52 |
20Q WILD-TYPE | 5 | 44 | 11 |
P value = 4.94e-11 (Fisher's exact test), Q value = 2.2e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
21Q MUTATED | 88 | 37 | 13 |
21Q WILD-TYPE | 83 | 158 | 48 |
P value = 0.00064 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
21Q MUTATED | 48 | 63 | 22 |
21Q WILD-TYPE | 117 | 80 | 79 |
P value = 0.000424 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
21Q MUTATED | 34 | 14 | 28 |
21Q WILD-TYPE | 45 | 64 | 35 |
P value = 0.000223 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
22Q MUTATED | 8 | 34 | 4 | 9 |
22Q WILD-TYPE | 27 | 27 | 25 | 12 |
P value = 0.000316 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 43 | 47 |
22Q MUTATED | 25 | 6 | 24 |
22Q WILD-TYPE | 31 | 37 | 23 |
P value = 8.17e-19 (Fisher's exact test), Q value = 3.8e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
22Q MUTATED | 103 | 33 | 12 |
22Q WILD-TYPE | 68 | 162 | 49 |
P value = 8.46e-05 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 114 | 88 | 68 |
22Q MUTATED | 49 | 14 | 26 |
22Q WILD-TYPE | 65 | 74 | 42 |
P value = 2e-08 (Fisher's exact test), Q value = 8.4e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 131 | 134 | 144 |
22Q MUTATED | 67 | 23 | 54 |
22Q WILD-TYPE | 64 | 111 | 90 |
P value = 1.47e-05 (Fisher's exact test), Q value = 0.0054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 165 | 143 | 101 |
22Q MUTATED | 64 | 63 | 17 |
22Q WILD-TYPE | 101 | 80 | 84 |
P value = 0.000495 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 80 | 174 | 143 |
22Q MUTATED | 13 | 66 | 56 |
22Q WILD-TYPE | 67 | 108 | 87 |
P value = 5.66e-06 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 79 | 78 | 63 |
22Q MUTATED | 33 | 9 | 27 |
22Q WILD-TYPE | 46 | 69 | 36 |
P value = 0.000112 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 171 | 195 | 61 |
XQ MUTATED | 59 | 33 | 22 |
XQ WILD-TYPE | 112 | 162 | 39 |
-
Copy number data file = transformed.cor.cli.txt
-
Molecular subtype file = COAD-TP.transferedmergedcluster.txt
-
Number of patients = 427
-
Number of significantly focal cnvs = 40
-
Number of molecular subtypes = 12
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Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.