This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 40 focal events and 10 molecular subtypes across 452 patients, 80 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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1q cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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2p cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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2q cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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3p cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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3q cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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4p cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5p cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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5q cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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6p cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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6q cnv correlated to 'CN_CNMF'.
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7p cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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7q cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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8p cnv correlated to 'CN_CNMF'.
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8q cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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9p cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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9q cnv correlated to 'CN_CNMF'.
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10p cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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10q cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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11p cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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11q cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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12p cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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12q cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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13q cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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14q cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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15q cnv correlated to 'CN_CNMF'.
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16p cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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16q cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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17p cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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17q cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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18p cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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18q cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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19p cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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19q cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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20p cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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20q cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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21q cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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22q cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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xq cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Chi-square test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Chi-square test | |
4p | 199 (44%) | 253 |
6.71e-18 (2.66e-15) |
7.47e-15 (2.94e-12) |
0.225 (1.00) |
0.612 (1.00) |
0.0202 (1.00) |
0.00032 (0.103) |
0.15 (1.00) |
0.405 (1.00) |
0.058 (1.00) |
4.5e-06 (0.00154) |
3q | 275 (61%) | 177 |
3.51e-08 (1.29e-05) |
1.24e-06 (0.00043) |
0.203 (1.00) |
0.585 (1.00) |
0.00109 (0.348) |
0.00174 (0.55) |
0.000331 (0.107) |
0.0725 (1.00) |
0.0484 (1.00) |
0.089 (1.00) |
4q | 161 (36%) | 291 |
1.93e-11 (7.46e-09) |
4.25e-09 (1.62e-06) |
0.586 (1.00) |
0.416 (1.00) |
0.0852 (1.00) |
0.0201 (1.00) |
0.033 (1.00) |
0.658 (1.00) |
0.236 (1.00) |
0.000357 (0.115) |
1p | 103 (23%) | 349 |
1.03e-08 (3.88e-06) |
1.15e-07 (4.14e-05) |
0.156 (1.00) |
0.851 (1.00) |
0.0627 (1.00) |
0.192 (1.00) |
0.0827 (1.00) |
0.649 (1.00) |
0.42 (1.00) |
0.0154 (1.00) |
1q | 134 (30%) | 318 |
4.9e-08 (1.79e-05) |
4.88e-08 (1.79e-05) |
0.222 (1.00) |
0.943 (1.00) |
0.0149 (1.00) |
0.0146 (1.00) |
0.0268 (1.00) |
0.652 (1.00) |
0.0545 (1.00) |
0.00366 (1.00) |
2p | 109 (24%) | 343 |
2.13e-08 (7.89e-06) |
8.95e-09 (3.37e-06) |
0.19 (1.00) |
0.55 (1.00) |
0.38 (1.00) |
0.221 (1.00) |
0.612 (1.00) |
0.223 (1.00) |
0.737 (1.00) |
0.0138 (1.00) |
2q | 102 (23%) | 350 |
0.000282 (0.0912) |
8.47e-05 (0.028) |
0.36 (1.00) |
0.896 (1.00) |
0.153 (1.00) |
0.0448 (1.00) |
0.479 (1.00) |
0.095 (1.00) |
0.57 (1.00) |
0.0595 (1.00) |
3p | 330 (73%) | 122 |
2.61e-32 (1.04e-29) |
4.09e-15 (1.62e-12) |
0.49 (1.00) |
0.171 (1.00) |
0.0436 (1.00) |
0.0527 (1.00) |
0.00102 (0.326) |
0.0497 (1.00) |
0.04 (1.00) |
0.00247 (0.779) |
5p | 207 (46%) | 245 |
1.12e-14 (4.41e-12) |
1.4e-09 (5.36e-07) |
0.857 (1.00) |
0.466 (1.00) |
0.0652 (1.00) |
0.278 (1.00) |
0.363 (1.00) |
0.869 (1.00) |
0.0873 (1.00) |
0.824 (1.00) |
5q | 197 (44%) | 255 |
2.25e-19 (8.97e-17) |
1.42e-15 (5.61e-13) |
0.434 (1.00) |
0.0795 (1.00) |
0.149 (1.00) |
0.00303 (0.946) |
0.309 (1.00) |
0.431 (1.00) |
0.2 (1.00) |
0.218 (1.00) |
6p | 126 (28%) | 326 |
4.46e-07 (0.000156) |
4.31e-05 (0.0144) |
0.284 (1.00) |
0.453 (1.00) |
0.475 (1.00) |
0.249 (1.00) |
0.758 (1.00) |
0.246 (1.00) |
0.674 (1.00) |
0.027 (1.00) |
7p | 186 (41%) | 266 |
1.27e-11 (4.9e-09) |
1.63e-08 (6.07e-06) |
0.13 (1.00) |
0.831 (1.00) |
0.623 (1.00) |
0.852 (1.00) |
0.204 (1.00) |
0.133 (1.00) |
0.636 (1.00) |
0.0838 (1.00) |
7q | 150 (33%) | 302 |
2.76e-07 (9.76e-05) |
1.38e-07 (4.93e-05) |
0.0432 (1.00) |
0.925 (1.00) |
0.54 (1.00) |
0.214 (1.00) |
0.132 (1.00) |
0.51 (1.00) |
0.248 (1.00) |
0.0223 (1.00) |
8q | 297 (66%) | 155 |
8.91e-05 (0.0293) |
0.00019 (0.0618) |
0.0704 (1.00) |
0.575 (1.00) |
0.113 (1.00) |
0.087 (1.00) |
0.19 (1.00) |
0.0191 (1.00) |
0.443 (1.00) |
0.0231 (1.00) |
9p | 241 (53%) | 211 |
4.08e-18 (1.62e-15) |
5.73e-09 (2.17e-06) |
0.569 (1.00) |
0.881 (1.00) |
0.636 (1.00) |
0.719 (1.00) |
0.464 (1.00) |
0.236 (1.00) |
0.9 (1.00) |
0.0515 (1.00) |
10p | 168 (37%) | 284 |
8.35e-08 (3.01e-05) |
3.01e-05 (0.0101) |
0.278 (1.00) |
0.296 (1.00) |
0.715 (1.00) |
0.128 (1.00) |
0.163 (1.00) |
0.158 (1.00) |
0.226 (1.00) |
0.0251 (1.00) |
10q | 123 (27%) | 329 |
4.51e-07 (0.000158) |
6.06e-05 (0.0201) |
0.0501 (1.00) |
0.123 (1.00) |
0.145 (1.00) |
0.00616 (1.00) |
0.451 (1.00) |
0.531 (1.00) |
0.0895 (1.00) |
0.0564 (1.00) |
11p | 172 (38%) | 280 |
7.31e-08 (2.64e-05) |
8.89e-05 (0.0293) |
0.529 (1.00) |
0.814 (1.00) |
0.101 (1.00) |
0.579 (1.00) |
0.144 (1.00) |
0.964 (1.00) |
0.293 (1.00) |
0.478 (1.00) |
11q | 199 (44%) | 253 |
7.89e-07 (0.000276) |
1.78e-05 (0.00605) |
0.334 (1.00) |
0.644 (1.00) |
0.116 (1.00) |
0.598 (1.00) |
0.623 (1.00) |
0.863 (1.00) |
0.326 (1.00) |
0.753 (1.00) |
12p | 154 (34%) | 298 |
1.11e-08 (4.13e-06) |
5.53e-06 (0.00189) |
0.021 (1.00) |
0.207 (1.00) |
0.00934 (1.00) |
0.0052 (1.00) |
0.158 (1.00) |
0.491 (1.00) |
0.062 (1.00) |
0.0379 (1.00) |
12q | 101 (22%) | 351 |
4.02e-06 (0.00138) |
4.66e-05 (0.0155) |
0.0744 (1.00) |
0.0854 (1.00) |
0.142 (1.00) |
0.0505 (1.00) |
0.362 (1.00) |
0.826 (1.00) |
0.229 (1.00) |
0.341 (1.00) |
13q | 196 (43%) | 256 |
8.85e-11 (3.41e-08) |
2.62e-09 (9.97e-07) |
0.29 (1.00) |
0.574 (1.00) |
0.0475 (1.00) |
0.00405 (1.00) |
0.196 (1.00) |
0.325 (1.00) |
0.206 (1.00) |
0.0477 (1.00) |
14q | 175 (39%) | 277 |
1.97e-07 (7e-05) |
5.49e-05 (0.0183) |
0.585 (1.00) |
0.944 (1.00) |
0.621 (1.00) |
0.424 (1.00) |
0.36 (1.00) |
0.00691 (1.00) |
0.636 (1.00) |
0.0123 (1.00) |
16p | 146 (32%) | 306 |
4.45e-09 (1.69e-06) |
9.01e-07 (0.000314) |
0.48 (1.00) |
0.827 (1.00) |
0.832 (1.00) |
0.288 (1.00) |
0.752 (1.00) |
0.126 (1.00) |
0.606 (1.00) |
0.0869 (1.00) |
16q | 162 (36%) | 290 |
2.72e-05 (0.00919) |
1.08e-06 (0.000375) |
0.326 (1.00) |
0.241 (1.00) |
0.0135 (1.00) |
0.0012 (0.382) |
0.106 (1.00) |
0.661 (1.00) |
0.00409 (1.00) |
0.0585 (1.00) |
17p | 155 (34%) | 297 |
1.43e-12 (5.59e-10) |
6.95e-08 (2.52e-05) |
0.464 (1.00) |
0.052 (1.00) |
0.00674 (1.00) |
0.00488 (1.00) |
0.0511 (1.00) |
0.155 (1.00) |
0.0558 (1.00) |
0.308 (1.00) |
17q | 106 (23%) | 346 |
3.58e-08 (1.32e-05) |
0.000119 (0.039) |
0.589 (1.00) |
0.0463 (1.00) |
0.149 (1.00) |
0.147 (1.00) |
0.334 (1.00) |
0.43 (1.00) |
0.311 (1.00) |
0.174 (1.00) |
18p | 193 (43%) | 259 |
1.2e-11 (4.65e-09) |
4.4e-08 (1.61e-05) |
0.801 (1.00) |
0.331 (1.00) |
0.119 (1.00) |
0.02 (1.00) |
0.221 (1.00) |
0.882 (1.00) |
0.018 (1.00) |
0.0189 (1.00) |
18q | 228 (50%) | 224 |
2.39e-12 (9.32e-10) |
1.06e-08 (3.97e-06) |
0.751 (1.00) |
0.117 (1.00) |
0.0568 (1.00) |
0.0035 (1.00) |
0.164 (1.00) |
0.0241 (1.00) |
0.463 (1.00) |
0.0451 (1.00) |
19p | 127 (28%) | 325 |
0.000201 (0.0652) |
3.91e-05 (0.0131) |
0.283 (1.00) |
0.712 (1.00) |
0.0403 (1.00) |
0.31 (1.00) |
0.862 (1.00) |
0.596 (1.00) |
0.295 (1.00) |
0.337 (1.00) |
19q | 134 (30%) | 318 |
1.89e-05 (0.0064) |
1.97e-07 (7e-05) |
0.138 (1.00) |
0.374 (1.00) |
0.0798 (1.00) |
0.175 (1.00) |
0.0358 (1.00) |
0.965 (1.00) |
0.593 (1.00) |
0.107 (1.00) |
20p | 209 (46%) | 243 |
1.03e-07 (3.69e-05) |
1.62e-07 (5.79e-05) |
0.572 (1.00) |
0.0268 (1.00) |
0.0343 (1.00) |
0.236 (1.00) |
0.329 (1.00) |
0.0911 (1.00) |
0.757 (1.00) |
0.0796 (1.00) |
20q | 203 (45%) | 249 |
3.67e-07 (0.000129) |
1.93e-06 (0.000664) |
0.917 (1.00) |
0.407 (1.00) |
0.0281 (1.00) |
0.191 (1.00) |
0.341 (1.00) |
0.0468 (1.00) |
0.617 (1.00) |
0.26 (1.00) |
21q | 191 (42%) | 261 |
7.74e-12 (3.01e-09) |
9.19e-09 (3.45e-06) |
0.931 (1.00) |
0.728 (1.00) |
0.368 (1.00) |
0.45 (1.00) |
0.774 (1.00) |
0.534 (1.00) |
0.745 (1.00) |
0.052 (1.00) |
22q | 162 (36%) | 290 |
2.22e-06 (0.000762) |
3.46e-07 (0.000122) |
0.388 (1.00) |
0.876 (1.00) |
0.648 (1.00) |
0.408 (1.00) |
0.739 (1.00) |
0.234 (1.00) |
0.289 (1.00) |
0.00655 (1.00) |
xq | 143 (32%) | 309 |
2.58e-08 (9.54e-06) |
6.39e-10 (2.45e-07) |
0.175 (1.00) |
0.0434 (1.00) |
0.138 (1.00) |
0.0331 (1.00) |
0.00417 (1.00) |
0.915 (1.00) |
0.375 (1.00) |
0.00863 (1.00) |
6q | 110 (24%) | 342 |
0.000109 (0.0358) |
0.0234 (1.00) |
0.529 (1.00) |
1 (1.00) |
0.155 (1.00) |
0.563 (1.00) |
0.613 (1.00) |
0.246 (1.00) |
0.933 (1.00) |
0.865 (1.00) |
8p | 295 (65%) | 157 |
5.32e-08 (1.94e-05) |
0.00254 (0.796) |
0.935 (1.00) |
0.664 (1.00) |
0.736 (1.00) |
0.317 (1.00) |
0.644 (1.00) |
0.0583 (1.00) |
0.701 (1.00) |
0.0429 (1.00) |
9q | 190 (42%) | 262 |
1.2e-12 (4.69e-10) |
0.00253 (0.793) |
0.305 (1.00) |
0.208 (1.00) |
0.579 (1.00) |
0.246 (1.00) |
0.908 (1.00) |
0.352 (1.00) |
0.414 (1.00) |
0.102 (1.00) |
15q | 149 (33%) | 303 |
1.08e-09 (4.13e-07) |
0.00127 (0.402) |
0.362 (1.00) |
0.397 (1.00) |
0.158 (1.00) |
0.695 (1.00) |
0.717 (1.00) |
0.548 (1.00) |
0.874 (1.00) |
0.383 (1.00) |
P value = 1.03e-08 (Fisher's exact test), Q value = 3.9e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
1P MUTATED | 77 | 17 | 9 |
1P WILD-TYPE | 148 | 160 | 41 |
P value = 1.15e-07 (Chi-square test), Q value = 4.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
1P MUTATED | 14 | 24 | 37 | 7 | 8 | 10 | 3 |
1P WILD-TYPE | 53 | 53 | 43 | 58 | 64 | 64 | 14 |
P value = 4.9e-08 (Fisher's exact test), Q value = 1.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
1Q MUTATED | 93 | 27 | 14 |
1Q WILD-TYPE | 132 | 150 | 36 |
P value = 4.88e-08 (Chi-square test), Q value = 1.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
1Q MUTATED | 24 | 30 | 42 | 12 | 9 | 12 | 5 |
1Q WILD-TYPE | 43 | 47 | 38 | 53 | 63 | 62 | 12 |
P value = 2.13e-08 (Fisher's exact test), Q value = 7.9e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
2P MUTATED | 78 | 18 | 13 |
2P WILD-TYPE | 147 | 159 | 37 |
P value = 8.95e-09 (Chi-square test), Q value = 3.4e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
2P MUTATED | 26 | 27 | 32 | 9 | 9 | 4 | 2 |
2P WILD-TYPE | 41 | 50 | 48 | 56 | 63 | 70 | 15 |
P value = 0.000282 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
2Q MUTATED | 68 | 24 | 10 |
2Q WILD-TYPE | 157 | 153 | 40 |
P value = 8.47e-05 (Chi-square test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
2Q MUTATED | 24 | 24 | 25 | 12 | 9 | 6 | 2 |
2Q WILD-TYPE | 43 | 53 | 55 | 53 | 63 | 68 | 15 |
P value = 2.61e-32 (Fisher's exact test), Q value = 1e-29
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
3P MUTATED | 212 | 75 | 43 |
3P WILD-TYPE | 13 | 102 | 7 |
P value = 4.09e-15 (Chi-square test), Q value = 1.6e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
3P MUTATED | 59 | 69 | 73 | 37 | 31 | 46 | 15 |
3P WILD-TYPE | 8 | 8 | 7 | 28 | 41 | 28 | 2 |
P value = 3.51e-08 (Fisher's exact test), Q value = 1.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
3Q MUTATED | 162 | 78 | 35 |
3Q WILD-TYPE | 63 | 99 | 15 |
P value = 1.24e-06 (Chi-square test), Q value = 0.00043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
3Q MUTATED | 47 | 57 | 58 | 42 | 25 | 38 | 8 |
3Q WILD-TYPE | 20 | 20 | 22 | 23 | 47 | 36 | 9 |
P value = 0.000331 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 182 | 129 |
3Q MUTATED | 73 | 131 | 71 |
3Q WILD-TYPE | 67 | 51 | 58 |
P value = 6.71e-18 (Fisher's exact test), Q value = 2.7e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
4P MUTATED | 143 | 36 | 20 |
4P WILD-TYPE | 82 | 141 | 30 |
P value = 7.47e-15 (Chi-square test), Q value = 2.9e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
4P MUTATED | 39 | 40 | 59 | 22 | 13 | 15 | 11 |
4P WILD-TYPE | 28 | 37 | 21 | 43 | 59 | 59 | 6 |
P value = 0.00032 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 101 | 158 |
4P MUTATED | 84 | 28 | 74 |
4P WILD-TYPE | 77 | 73 | 84 |
P value = 4.5e-06 (Chi-square test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 4 | 40 | 91 | 46 | 155 | 79 |
4P MUTATED | 2 | 10 | 24 | 21 | 67 | 52 |
4P WILD-TYPE | 2 | 30 | 67 | 25 | 88 | 27 |
P value = 1.93e-11 (Fisher's exact test), Q value = 7.5e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
4Q MUTATED | 112 | 30 | 19 |
4Q WILD-TYPE | 113 | 147 | 31 |
P value = 4.25e-09 (Chi-square test), Q value = 1.6e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
4Q MUTATED | 32 | 35 | 47 | 16 | 12 | 14 | 5 |
4Q WILD-TYPE | 35 | 42 | 33 | 49 | 60 | 60 | 12 |
P value = 0.000357 (Chi-square test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 4 | 40 | 91 | 46 | 155 | 79 |
4Q MUTATED | 3 | 9 | 20 | 19 | 56 | 41 |
4Q WILD-TYPE | 1 | 31 | 71 | 27 | 99 | 38 |
P value = 1.12e-14 (Fisher's exact test), Q value = 4.4e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
5P MUTATED | 140 | 41 | 26 |
5P WILD-TYPE | 85 | 136 | 24 |
P value = 1.4e-09 (Chi-square test), Q value = 5.4e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
5P MUTATED | 40 | 51 | 47 | 24 | 16 | 20 | 9 |
5P WILD-TYPE | 27 | 26 | 33 | 41 | 56 | 54 | 8 |
P value = 2.25e-19 (Fisher's exact test), Q value = 9e-17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
5Q MUTATED | 143 | 33 | 21 |
5Q WILD-TYPE | 82 | 144 | 29 |
P value = 1.42e-15 (Chi-square test), Q value = 5.6e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
5Q MUTATED | 45 | 48 | 50 | 19 | 10 | 17 | 8 |
5Q WILD-TYPE | 22 | 29 | 30 | 46 | 62 | 57 | 9 |
P value = 4.46e-07 (Fisher's exact test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
6P MUTATED | 82 | 25 | 19 |
6P WILD-TYPE | 143 | 152 | 31 |
P value = 4.31e-05 (Chi-square test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
6P MUTATED | 22 | 31 | 34 | 11 | 11 | 12 | 5 |
6P WILD-TYPE | 45 | 46 | 46 | 54 | 61 | 62 | 12 |
P value = 0.000109 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
6Q MUTATED | 67 | 25 | 18 |
6Q WILD-TYPE | 158 | 152 | 32 |
P value = 1.27e-11 (Fisher's exact test), Q value = 4.9e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
7P MUTATED | 125 | 38 | 23 |
7P WILD-TYPE | 100 | 139 | 27 |
P value = 1.63e-08 (Chi-square test), Q value = 6.1e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
7P MUTATED | 36 | 38 | 51 | 11 | 24 | 20 | 6 |
7P WILD-TYPE | 31 | 39 | 29 | 54 | 48 | 54 | 11 |
P value = 2.76e-07 (Fisher's exact test), Q value = 9.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
7Q MUTATED | 99 | 33 | 18 |
7Q WILD-TYPE | 126 | 144 | 32 |
P value = 1.38e-07 (Chi-square test), Q value = 4.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
7Q MUTATED | 32 | 26 | 45 | 11 | 17 | 15 | 4 |
7Q WILD-TYPE | 35 | 51 | 35 | 54 | 55 | 59 | 13 |
P value = 5.32e-08 (Fisher's exact test), Q value = 1.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
8P MUTATED | 172 | 87 | 36 |
8P WILD-TYPE | 53 | 90 | 14 |
P value = 8.91e-05 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
8Q MUTATED | 164 | 95 | 38 |
8Q WILD-TYPE | 61 | 82 | 12 |
P value = 0.00019 (Chi-square test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
8Q MUTATED | 43 | 66 | 51 | 32 | 41 | 50 | 14 |
8Q WILD-TYPE | 24 | 11 | 29 | 33 | 31 | 24 | 3 |
P value = 4.08e-18 (Fisher's exact test), Q value = 1.6e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
9P MUTATED | 154 | 49 | 38 |
9P WILD-TYPE | 71 | 128 | 12 |
P value = 5.73e-09 (Chi-square test), Q value = 2.2e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
9P MUTATED | 45 | 44 | 59 | 18 | 38 | 25 | 12 |
9P WILD-TYPE | 22 | 33 | 21 | 47 | 34 | 49 | 5 |
P value = 1.2e-12 (Fisher's exact test), Q value = 4.7e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
9Q MUTATED | 106 | 44 | 40 |
9Q WILD-TYPE | 119 | 133 | 10 |
P value = 8.35e-08 (Fisher's exact test), Q value = 3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
10P MUTATED | 109 | 38 | 21 |
10P WILD-TYPE | 116 | 139 | 29 |
P value = 3.01e-05 (Chi-square test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
10P MUTATED | 36 | 36 | 36 | 17 | 22 | 13 | 8 |
10P WILD-TYPE | 31 | 41 | 44 | 48 | 50 | 61 | 9 |
P value = 4.51e-07 (Fisher's exact test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
10Q MUTATED | 85 | 25 | 13 |
10Q WILD-TYPE | 140 | 152 | 37 |
P value = 6.06e-05 (Chi-square test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
10Q MUTATED | 23 | 27 | 33 | 15 | 12 | 7 | 6 |
10Q WILD-TYPE | 44 | 50 | 47 | 50 | 60 | 67 | 11 |
P value = 7.31e-08 (Fisher's exact test), Q value = 2.6e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
11P MUTATED | 114 | 41 | 17 |
11P WILD-TYPE | 111 | 136 | 33 |
P value = 8.89e-05 (Chi-square test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
11P MUTATED | 22 | 35 | 45 | 24 | 17 | 19 | 10 |
11P WILD-TYPE | 45 | 42 | 35 | 41 | 55 | 55 | 7 |
P value = 7.89e-07 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
11Q MUTATED | 126 | 53 | 20 |
11Q WILD-TYPE | 99 | 124 | 30 |
P value = 1.78e-05 (Chi-square test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
11Q MUTATED | 24 | 41 | 45 | 37 | 21 | 20 | 11 |
11Q WILD-TYPE | 43 | 36 | 35 | 28 | 51 | 54 | 6 |
P value = 1.11e-08 (Fisher's exact test), Q value = 4.1e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
12P MUTATED | 104 | 32 | 18 |
12P WILD-TYPE | 121 | 145 | 32 |
P value = 5.53e-06 (Chi-square test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
12P MUTATED | 32 | 30 | 39 | 23 | 11 | 13 | 6 |
12P WILD-TYPE | 35 | 47 | 41 | 42 | 61 | 61 | 11 |
P value = 4.02e-06 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
12Q MUTATED | 69 | 19 | 13 |
12Q WILD-TYPE | 156 | 158 | 37 |
P value = 4.66e-05 (Chi-square test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
12Q MUTATED | 23 | 22 | 25 | 16 | 5 | 6 | 4 |
12Q WILD-TYPE | 44 | 55 | 55 | 49 | 67 | 68 | 13 |
P value = 8.85e-11 (Fisher's exact test), Q value = 3.4e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
13Q MUTATED | 131 | 44 | 21 |
13Q WILD-TYPE | 94 | 133 | 29 |
P value = 2.62e-09 (Chi-square test), Q value = 1e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
13Q MUTATED | 44 | 42 | 46 | 23 | 13 | 21 | 7 |
13Q WILD-TYPE | 23 | 35 | 34 | 42 | 59 | 53 | 10 |
P value = 1.97e-07 (Fisher's exact test), Q value = 7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
14Q MUTATED | 111 | 41 | 23 |
14Q WILD-TYPE | 114 | 136 | 27 |
P value = 5.49e-05 (Chi-square test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
14Q MUTATED | 32 | 37 | 44 | 14 | 21 | 20 | 7 |
14Q WILD-TYPE | 35 | 40 | 36 | 51 | 51 | 54 | 10 |
P value = 1.08e-09 (Fisher's exact test), Q value = 4.1e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
15Q MUTATED | 99 | 28 | 22 |
15Q WILD-TYPE | 126 | 149 | 28 |
P value = 4.45e-09 (Fisher's exact test), Q value = 1.7e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
16P MUTATED | 97 | 28 | 21 |
16P WILD-TYPE | 128 | 149 | 29 |
P value = 9.01e-07 (Chi-square test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
16P MUTATED | 33 | 31 | 34 | 15 | 9 | 15 | 9 |
16P WILD-TYPE | 34 | 46 | 46 | 50 | 63 | 59 | 8 |
P value = 2.72e-05 (Fisher's exact test), Q value = 0.0092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
16Q MUTATED | 100 | 41 | 21 |
16Q WILD-TYPE | 125 | 136 | 29 |
P value = 1.08e-06 (Chi-square test), Q value = 0.00037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
16Q MUTATED | 31 | 30 | 39 | 30 | 9 | 15 | 8 |
16Q WILD-TYPE | 36 | 47 | 41 | 35 | 63 | 59 | 9 |
P value = 1.43e-12 (Fisher's exact test), Q value = 5.6e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
17P MUTATED | 109 | 26 | 20 |
17P WILD-TYPE | 116 | 151 | 30 |
P value = 6.95e-08 (Chi-square test), Q value = 2.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
17P MUTATED | 33 | 33 | 42 | 19 | 11 | 12 | 5 |
17P WILD-TYPE | 34 | 44 | 38 | 46 | 61 | 62 | 12 |
P value = 3.58e-08 (Fisher's exact test), Q value = 1.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
17Q MUTATED | 73 | 17 | 16 |
17Q WILD-TYPE | 152 | 160 | 34 |
P value = 0.000119 (Chi-square test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
17Q MUTATED | 19 | 23 | 32 | 12 | 8 | 9 | 3 |
17Q WILD-TYPE | 48 | 54 | 48 | 53 | 64 | 65 | 14 |
P value = 1.2e-11 (Fisher's exact test), Q value = 4.6e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
18P MUTATED | 130 | 41 | 22 |
18P WILD-TYPE | 95 | 136 | 28 |
P value = 4.4e-08 (Chi-square test), Q value = 1.6e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
18P MUTATED | 42 | 39 | 48 | 18 | 16 | 23 | 7 |
18P WILD-TYPE | 25 | 38 | 32 | 47 | 56 | 51 | 10 |
P value = 2.39e-12 (Fisher's exact test), Q value = 9.3e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
18Q MUTATED | 149 | 53 | 26 |
18Q WILD-TYPE | 76 | 124 | 24 |
P value = 1.06e-08 (Chi-square test), Q value = 4e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
18Q MUTATED | 46 | 50 | 50 | 17 | 22 | 33 | 10 |
18Q WILD-TYPE | 21 | 27 | 30 | 48 | 50 | 41 | 7 |
P value = 0.000201 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
19P MUTATED | 80 | 31 | 16 |
19P WILD-TYPE | 145 | 146 | 34 |
P value = 3.91e-05 (Chi-square test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
19P MUTATED | 18 | 31 | 36 | 16 | 12 | 10 | 4 |
19P WILD-TYPE | 49 | 46 | 44 | 49 | 60 | 64 | 13 |
P value = 1.89e-05 (Fisher's exact test), Q value = 0.0064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
19Q MUTATED | 86 | 31 | 17 |
19Q WILD-TYPE | 139 | 146 | 33 |
P value = 1.97e-07 (Chi-square test), Q value = 7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
19Q MUTATED | 21 | 31 | 41 | 18 | 12 | 8 | 3 |
19Q WILD-TYPE | 46 | 46 | 39 | 47 | 60 | 66 | 14 |
P value = 1.03e-07 (Fisher's exact test), Q value = 3.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
20P MUTATED | 132 | 54 | 23 |
20P WILD-TYPE | 93 | 123 | 27 |
P value = 1.62e-07 (Chi-square test), Q value = 5.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
20P MUTATED | 32 | 53 | 50 | 22 | 21 | 25 | 6 |
20P WILD-TYPE | 35 | 24 | 30 | 43 | 51 | 49 | 11 |
P value = 3.67e-07 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
20Q MUTATED | 128 | 53 | 22 |
20Q WILD-TYPE | 97 | 124 | 28 |
P value = 1.93e-06 (Chi-square test), Q value = 0.00066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
20Q MUTATED | 34 | 49 | 47 | 19 | 21 | 24 | 9 |
20Q WILD-TYPE | 33 | 28 | 33 | 46 | 51 | 50 | 8 |
P value = 7.74e-12 (Fisher's exact test), Q value = 3e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
21Q MUTATED | 126 | 39 | 26 |
21Q WILD-TYPE | 99 | 138 | 24 |
P value = 9.19e-09 (Chi-square test), Q value = 3.5e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
21Q MUTATED | 33 | 45 | 50 | 14 | 19 | 21 | 9 |
21Q WILD-TYPE | 34 | 32 | 30 | 51 | 53 | 53 | 8 |
P value = 2.22e-06 (Fisher's exact test), Q value = 0.00076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
22Q MUTATED | 104 | 39 | 19 |
22Q WILD-TYPE | 121 | 138 | 31 |
P value = 3.46e-07 (Chi-square test), Q value = 0.00012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
22Q MUTATED | 25 | 40 | 44 | 14 | 12 | 21 | 6 |
22Q WILD-TYPE | 42 | 37 | 36 | 51 | 60 | 53 | 11 |
P value = 2.58e-08 (Fisher's exact test), Q value = 9.5e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 225 | 177 | 50 |
XQ MUTATED | 99 | 30 | 14 |
XQ WILD-TYPE | 126 | 147 | 36 |
P value = 6.39e-10 (Chi-square test), Q value = 2.5e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 67 | 77 | 80 | 65 | 72 | 74 | 17 |
XQ MUTATED | 22 | 36 | 45 | 16 | 10 | 10 | 4 |
XQ WILD-TYPE | 45 | 41 | 35 | 49 | 62 | 64 | 13 |
-
Copy number data file = transformed.cor.cli.txt
-
Molecular subtype file = HNSC-TP.transferedmergedcluster.txt
-
Number of patients = 452
-
Number of significantly focal cnvs = 40
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multi-class clinical features (nominal or ordinal), Chi-square tests (Greenwood and Nikulin 1996) were used to estimate the P values using the 'chisq.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.