This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.
Testing the association between mutation status of 20 genes and 10 molecular subtypes across 220 patients, 22 significant findings detected with P value < 0.05 and Q value < 0.25.
-
PIK3CA mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
PGM5 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.
-
KRAS mutation correlated to 'CN_CNMF'.
-
CBWD1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
TP53 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
ARID1A mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
-
PTEN mutation correlated to 'MRNASEQ_CNMF'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nMutated (%) | nWild-Type | Chi-square test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Chi-square test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
TP53 | 99 (45%) | 121 |
4.6e-10 (9.2e-08) |
0.000231 (0.0434) |
0.17 (1.00) |
0.855 (1.00) |
0.000261 (0.0487) |
0.000375 (0.069) |
0.0327 (1.00) |
1.29e-05 (0.00254) |
0.204 (1.00) |
2.33e-05 (0.00454) |
PIK3CA | 48 (22%) | 172 |
0.000263 (0.049) |
0.000171 (0.0326) |
0.0143 (1.00) |
0.000338 (0.0626) |
0.000924 (0.166) |
3.97e-05 (0.00766) |
0.00508 (0.838) |
0.0171 (1.00) |
0.0179 (1.00) |
0.00312 (0.536) |
CBWD1 | 28 (13%) | 192 |
1.85e-05 (0.00362) |
1.76e-07 (3.5e-05) |
7.85e-05 (0.0151) |
0.00466 (0.779) |
9.94e-05 (0.019) |
0.00371 (0.63) |
0.0284 (1.00) |
0.00791 (1.00) |
0.238 (1.00) |
0.00018 (0.034) |
PGM5 | 22 (10%) | 198 |
0.00619 (1.00) |
6.25e-06 (0.00124) |
0.153 (1.00) |
0.0283 (1.00) |
0.000974 (0.174) |
0.00238 (0.419) |
0.276 (1.00) |
0.029 (1.00) |
0.117 (1.00) |
0.0171 (1.00) |
ARID1A | 41 (19%) | 179 |
3.05e-05 (0.00592) |
0.0992 (1.00) |
0.0151 (1.00) |
0.0637 (1.00) |
0.000738 (0.135) |
0.00996 (1.00) |
0.0861 (1.00) |
0.00608 (0.995) |
0.883 (1.00) |
0.162 (1.00) |
KRAS | 25 (11%) | 195 |
0.000807 (0.147) |
0.492 (1.00) |
0.557 (1.00) |
0.921 (1.00) |
0.216 (1.00) |
0.0262 (1.00) |
0.164 (1.00) |
0.505 (1.00) |
0.0973 (1.00) |
0.912 (1.00) |
PTEN | 14 (6%) | 206 |
0.0235 (1.00) |
0.28 (1.00) |
0.00434 (0.73) |
0.0101 (1.00) |
0.000833 (0.151) |
0.0121 (1.00) |
0.158 (1.00) |
0.012 (1.00) |
0.288 (1.00) |
0.00607 (0.995) |
SMAD4 | 19 (9%) | 201 |
0.701 (1.00) |
1 (1.00) |
0.064 (1.00) |
0.735 (1.00) |
0.00387 (0.654) |
0.193 (1.00) |
0.201 (1.00) |
0.157 (1.00) |
0.531 (1.00) |
0.536 (1.00) |
RHOA | 13 (6%) | 207 |
0.183 (1.00) |
0.176 (1.00) |
0.872 (1.00) |
0.86 (1.00) |
0.558 (1.00) |
0.0531 (1.00) |
0.0035 (0.599) |
0.0848 (1.00) |
0.00268 (0.464) |
0.038 (1.00) |
IRF2 | 14 (6%) | 206 |
0.198 (1.00) |
0.28 (1.00) |
0.0641 (1.00) |
0.764 (1.00) |
0.21 (1.00) |
0.632 (1.00) |
0.0301 (1.00) |
0.0244 (1.00) |
0.123 (1.00) |
0.0866 (1.00) |
CDH1 | 18 (8%) | 202 |
0.0792 (1.00) |
0.494 (1.00) |
0.574 (1.00) |
0.64 (1.00) |
0.11 (1.00) |
0.0575 (1.00) |
0.0261 (1.00) |
0.0495 (1.00) |
0.0791 (1.00) |
0.123 (1.00) |
FBXW7 | 19 (9%) | 201 |
0.0766 (1.00) |
0.0175 (1.00) |
0.00182 (0.322) |
0.0142 (1.00) |
0.00743 (1.00) |
0.323 (1.00) |
0.155 (1.00) |
0.0696 (1.00) |
0.00949 (1.00) |
0.00256 (0.445) |
B2M | 8 (4%) | 212 |
0.0567 (1.00) |
0.013 (1.00) |
0.0861 (1.00) |
0.695 (1.00) |
0.0513 (1.00) |
0.3 (1.00) |
0.355 (1.00) |
0.149 (1.00) |
0.598 (1.00) |
0.103 (1.00) |
FAM46D | 6 (3%) | 214 |
0.467 (1.00) |
0.742 (1.00) |
0.744 (1.00) |
0.109 (1.00) |
0.103 (1.00) |
1 (1.00) |
0.775 (1.00) |
0.67 (1.00) |
1 (1.00) |
0.714 (1.00) |
RNF43 | 9 (4%) | 211 |
0.364 (1.00) |
0.881 (1.00) |
0.577 (1.00) |
0.113 (1.00) |
0.273 (1.00) |
0.798 (1.00) |
0.634 (1.00) |
0.181 (1.00) |
0.878 (1.00) |
0.274 (1.00) |
APC | 33 (15%) | 187 |
0.735 (1.00) |
0.0468 (1.00) |
0.0755 (1.00) |
0.0909 (1.00) |
0.302 (1.00) |
0.00248 (0.433) |
0.0124 (1.00) |
0.00499 (0.829) |
0.06 (1.00) |
0.00989 (1.00) |
WSB2 | 7 (3%) | 213 |
0.305 (1.00) |
0.0759 (1.00) |
0.0861 (1.00) |
0.0629 (1.00) |
0.126 (1.00) |
0.0291 (1.00) |
0.00144 (0.257) |
0.065 (1.00) |
0.132 (1.00) |
0.0464 (1.00) |
MAP2K7 | 14 (6%) | 206 |
0.0504 (1.00) |
0.0614 (1.00) |
0.821 (1.00) |
0.764 (1.00) |
0.0501 (1.00) |
0.488 (1.00) |
0.158 (1.00) |
0.0964 (1.00) |
0.791 (1.00) |
0.261 (1.00) |
TRPS1 | 30 (14%) | 190 |
0.517 (1.00) |
0.0174 (1.00) |
0.111 (1.00) |
0.118 (1.00) |
0.0233 (1.00) |
0.235 (1.00) |
0.332 (1.00) |
0.665 (1.00) |
0.516 (1.00) |
0.118 (1.00) |
C13ORF33 | 6 (3%) | 214 |
0.143 (1.00) |
0.00943 (1.00) |
0.0152 (1.00) |
0.0861 (1.00) |
0.141 (1.00) |
0.46 (1.00) |
0.515 (1.00) |
0.44 (1.00) |
0.216 (1.00) |
0.274 (1.00) |
P value = 0.000263 (Chi-square test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 20 | 37 | 6 | 52 |
PIK3CA MUTATED | 36 | 3 | 4 | 2 | 3 |
PIK3CA WILD-TYPE | 68 | 17 | 33 | 4 | 49 |
P value = 0.000171 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 46 | 63 |
PIK3CA MUTATED | 26 | 3 | 13 |
PIK3CA WILD-TYPE | 40 | 43 | 50 |
P value = 0.0143 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 68 | 67 |
PIK3CA MUTATED | 20 | 8 | 17 |
PIK3CA WILD-TYPE | 42 | 60 | 50 |
P value = 0.000338 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 36 | 80 |
PIK3CA MUTATED | 22 | 15 | 8 |
PIK3CA WILD-TYPE | 59 | 21 | 72 |
P value = 0.000924 (Chi-square test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 48 | 43 | 30 | 30 | 44 |
PIK3CA MUTATED | 20 | 8 | 3 | 9 | 4 |
PIK3CA WILD-TYPE | 28 | 35 | 27 | 21 | 40 |
P value = 3.97e-05 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 77 | 65 |
PIK3CA MUTATED | 3 | 29 | 12 |
PIK3CA WILD-TYPE | 50 | 48 | 53 |
P value = 0.00508 (Fisher's exact test), Q value = 0.84
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 69 | 67 |
PIK3CA MUTATED | 27 | 14 | 7 |
PIK3CA WILD-TYPE | 57 | 55 | 60 |
P value = 0.0171 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 54 | 94 |
PIK3CA MUTATED | 16 | 5 | 27 |
PIK3CA WILD-TYPE | 56 | 49 | 67 |
P value = 0.0179 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 69 | 51 |
PIK3CA MUTATED | 21 | 13 | 8 |
PIK3CA WILD-TYPE | 35 | 56 | 43 |
P value = 0.00312 (Fisher's exact test), Q value = 0.54
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 84 | 50 |
PIK3CA MUTATED | 3 | 28 | 11 |
PIK3CA WILD-TYPE | 39 | 56 | 39 |
P value = 0.00619 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 20 | 37 | 6 | 52 |
PGM5 MUTATED | 18 | 2 | 1 | 1 | 0 |
PGM5 WILD-TYPE | 86 | 18 | 36 | 5 | 52 |
P value = 6.25e-06 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 46 | 63 |
PGM5 MUTATED | 15 | 0 | 1 |
PGM5 WILD-TYPE | 51 | 46 | 62 |
P value = 0.153 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 68 | 67 |
PGM5 MUTATED | 10 | 4 | 6 |
PGM5 WILD-TYPE | 52 | 64 | 61 |
P value = 0.0283 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 36 | 80 |
PGM5 MUTATED | 11 | 6 | 3 |
PGM5 WILD-TYPE | 70 | 30 | 77 |
P value = 0.000974 (Chi-square test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 48 | 43 | 30 | 30 | 44 |
PGM5 MUTATED | 11 | 2 | 5 | 1 | 0 |
PGM5 WILD-TYPE | 37 | 41 | 25 | 29 | 44 |
P value = 0.00238 (Fisher's exact test), Q value = 0.42
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 77 | 65 |
PGM5 MUTATED | 0 | 13 | 6 |
PGM5 WILD-TYPE | 53 | 64 | 59 |
P value = 0.276 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 69 | 67 |
PGM5 MUTATED | 12 | 5 | 5 |
PGM5 WILD-TYPE | 72 | 64 | 62 |
P value = 0.029 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 54 | 94 |
PGM5 MUTATED | 7 | 1 | 14 |
PGM5 WILD-TYPE | 65 | 53 | 80 |
P value = 0.117 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 69 | 51 |
PGM5 MUTATED | 4 | 10 | 2 |
PGM5 WILD-TYPE | 52 | 59 | 49 |
P value = 0.0171 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 84 | 50 |
PGM5 MUTATED | 0 | 12 | 4 |
PGM5 WILD-TYPE | 42 | 72 | 46 |
P value = 0.000807 (Chi-square test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 20 | 37 | 6 | 52 |
KRAS MUTATED | 18 | 1 | 1 | 3 | 2 |
KRAS WILD-TYPE | 86 | 19 | 36 | 3 | 50 |
P value = 0.492 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 46 | 63 |
KRAS MUTATED | 9 | 3 | 6 |
KRAS WILD-TYPE | 57 | 43 | 57 |
P value = 0.557 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 68 | 67 |
KRAS MUTATED | 10 | 7 | 7 |
KRAS WILD-TYPE | 52 | 61 | 60 |
P value = 0.921 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 36 | 80 |
KRAS MUTATED | 11 | 4 | 9 |
KRAS WILD-TYPE | 70 | 32 | 71 |
P value = 0.216 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 48 | 43 | 30 | 30 | 44 |
KRAS MUTATED | 9 | 4 | 2 | 4 | 2 |
KRAS WILD-TYPE | 39 | 39 | 28 | 26 | 42 |
P value = 0.0262 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 77 | 65 |
KRAS MUTATED | 1 | 12 | 8 |
KRAS WILD-TYPE | 52 | 65 | 57 |
P value = 0.164 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 69 | 67 |
KRAS MUTATED | 13 | 4 | 8 |
KRAS WILD-TYPE | 71 | 65 | 59 |
P value = 0.505 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 54 | 94 |
KRAS MUTATED | 8 | 4 | 13 |
KRAS WILD-TYPE | 64 | 50 | 81 |
P value = 0.0973 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 69 | 51 |
KRAS MUTATED | 5 | 11 | 2 |
KRAS WILD-TYPE | 51 | 58 | 49 |
P value = 0.912 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 84 | 50 |
KRAS MUTATED | 5 | 8 | 5 |
KRAS WILD-TYPE | 37 | 76 | 45 |
P value = 1.85e-05 (Chi-square test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 20 | 37 | 6 | 52 |
CBWD1 MUTATED | 26 | 0 | 2 | 0 | 0 |
CBWD1 WILD-TYPE | 78 | 20 | 35 | 6 | 52 |
P value = 1.76e-07 (Fisher's exact test), Q value = 3.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 46 | 63 |
CBWD1 MUTATED | 20 | 0 | 2 |
CBWD1 WILD-TYPE | 46 | 46 | 61 |
P value = 7.85e-05 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 68 | 67 |
CBWD1 MUTATED | 18 | 2 | 7 |
CBWD1 WILD-TYPE | 44 | 66 | 60 |
P value = 0.00466 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 36 | 80 |
CBWD1 MUTATED | 14 | 9 | 4 |
CBWD1 WILD-TYPE | 67 | 27 | 76 |
P value = 9.94e-05 (Chi-square test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 48 | 43 | 30 | 30 | 44 |
CBWD1 MUTATED | 15 | 4 | 3 | 2 | 0 |
CBWD1 WILD-TYPE | 33 | 39 | 27 | 28 | 44 |
P value = 0.00371 (Fisher's exact test), Q value = 0.63
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 77 | 65 |
CBWD1 MUTATED | 2 | 17 | 5 |
CBWD1 WILD-TYPE | 51 | 60 | 60 |
P value = 0.0284 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 69 | 67 |
CBWD1 MUTATED | 17 | 7 | 4 |
CBWD1 WILD-TYPE | 67 | 62 | 63 |
P value = 0.00791 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 54 | 94 |
CBWD1 MUTATED | 10 | 1 | 17 |
CBWD1 WILD-TYPE | 62 | 53 | 77 |
P value = 0.238 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 69 | 51 |
CBWD1 MUTATED | 8 | 11 | 3 |
CBWD1 WILD-TYPE | 48 | 58 | 48 |
P value = 0.00018 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 84 | 50 |
CBWD1 MUTATED | 0 | 19 | 3 |
CBWD1 WILD-TYPE | 42 | 65 | 47 |
P value = 4.6e-10 (Chi-square test), Q value = 9.2e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 20 | 37 | 6 | 52 |
TP53 MUTATED | 22 | 16 | 20 | 3 | 37 |
TP53 WILD-TYPE | 82 | 4 | 17 | 3 | 15 |
P value = 0.000231 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 46 | 63 |
TP53 MUTATED | 28 | 33 | 21 |
TP53 WILD-TYPE | 38 | 13 | 42 |
P value = 0.17 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 68 | 67 |
TP53 MUTATED | 33 | 25 | 30 |
TP53 WILD-TYPE | 29 | 43 | 37 |
P value = 0.855 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 36 | 80 |
TP53 MUTATED | 37 | 17 | 34 |
TP53 WILD-TYPE | 44 | 19 | 46 |
P value = 0.000261 (Chi-square test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 48 | 43 | 30 | 30 | 44 |
TP53 MUTATED | 14 | 12 | 12 | 17 | 30 |
TP53 WILD-TYPE | 34 | 31 | 18 | 13 | 14 |
P value = 0.000375 (Fisher's exact test), Q value = 0.069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 77 | 65 |
TP53 MUTATED | 35 | 30 | 20 |
TP53 WILD-TYPE | 18 | 47 | 45 |
P value = 0.0327 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 69 | 67 |
TP53 MUTATED | 34 | 26 | 39 |
TP53 WILD-TYPE | 50 | 43 | 28 |
P value = 1.29e-05 (Fisher's exact test), Q value = 0.0025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 54 | 94 |
TP53 MUTATED | 23 | 39 | 37 |
TP53 WILD-TYPE | 49 | 15 | 57 |
P value = 0.204 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 69 | 51 |
TP53 MUTATED | 25 | 38 | 20 |
TP53 WILD-TYPE | 31 | 31 | 31 |
P value = 2.33e-05 (Fisher's exact test), Q value = 0.0045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 84 | 50 |
TP53 MUTATED | 31 | 39 | 13 |
TP53 WILD-TYPE | 11 | 45 | 37 |
P value = 3.05e-05 (Chi-square test), Q value = 0.0059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 20 | 37 | 6 | 52 |
ARID1A MUTATED | 33 | 2 | 6 | 0 | 0 |
ARID1A WILD-TYPE | 71 | 18 | 31 | 6 | 52 |
P value = 0.0992 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 46 | 63 |
ARID1A MUTATED | 16 | 4 | 10 |
ARID1A WILD-TYPE | 50 | 42 | 53 |
P value = 0.0151 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 68 | 67 |
ARID1A MUTATED | 19 | 7 | 13 |
ARID1A WILD-TYPE | 43 | 61 | 54 |
P value = 0.0637 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 36 | 80 |
ARID1A MUTATED | 22 | 7 | 10 |
ARID1A WILD-TYPE | 59 | 29 | 70 |
P value = 0.000738 (Chi-square test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 48 | 43 | 30 | 30 | 44 |
ARID1A MUTATED | 19 | 9 | 4 | 5 | 2 |
ARID1A WILD-TYPE | 29 | 34 | 26 | 25 | 42 |
P value = 0.00996 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 77 | 65 |
ARID1A MUTATED | 4 | 22 | 13 |
ARID1A WILD-TYPE | 49 | 55 | 52 |
P value = 0.0861 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 69 | 67 |
ARID1A MUTATED | 22 | 10 | 9 |
ARID1A WILD-TYPE | 62 | 59 | 58 |
P value = 0.00608 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 54 | 94 |
ARID1A MUTATED | 11 | 4 | 26 |
ARID1A WILD-TYPE | 61 | 50 | 68 |
P value = 0.883 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 69 | 51 |
ARID1A MUTATED | 9 | 13 | 8 |
ARID1A WILD-TYPE | 47 | 56 | 43 |
P value = 0.162 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 84 | 50 |
ARID1A MUTATED | 4 | 19 | 7 |
ARID1A WILD-TYPE | 38 | 65 | 43 |
P value = 0.701 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 20 | 37 | 6 | 52 |
SMAD4 MUTATED | 8 | 1 | 5 | 0 | 5 |
SMAD4 WILD-TYPE | 96 | 19 | 32 | 6 | 47 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 46 | 63 |
SMAD4 MUTATED | 6 | 4 | 5 |
SMAD4 WILD-TYPE | 60 | 42 | 58 |
P value = 0.064 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 68 | 67 |
SMAD4 MUTATED | 9 | 5 | 2 |
SMAD4 WILD-TYPE | 53 | 63 | 65 |
P value = 0.735 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 36 | 80 |
SMAD4 MUTATED | 6 | 4 | 6 |
SMAD4 WILD-TYPE | 75 | 32 | 74 |
P value = 0.00387 (Chi-square test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 48 | 43 | 30 | 30 | 44 |
SMAD4 MUTATED | 5 | 1 | 7 | 4 | 0 |
SMAD4 WILD-TYPE | 43 | 42 | 23 | 26 | 44 |
P value = 0.193 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 77 | 65 |
SMAD4 MUTATED | 2 | 10 | 5 |
SMAD4 WILD-TYPE | 51 | 67 | 60 |
P value = 0.201 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 69 | 67 |
SMAD4 MUTATED | 11 | 4 | 4 |
SMAD4 WILD-TYPE | 73 | 65 | 63 |
P value = 0.157 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 54 | 94 |
SMAD4 MUTATED | 5 | 2 | 12 |
SMAD4 WILD-TYPE | 67 | 52 | 82 |
P value = 0.531 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 69 | 51 |
SMAD4 MUTATED | 4 | 8 | 3 |
SMAD4 WILD-TYPE | 52 | 61 | 48 |
P value = 0.536 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 84 | 50 |
SMAD4 MUTATED | 2 | 9 | 4 |
SMAD4 WILD-TYPE | 40 | 75 | 46 |
P value = 0.183 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 20 | 37 | 6 | 52 |
RHOA MUTATED | 10 | 1 | 2 | 0 | 0 |
RHOA WILD-TYPE | 94 | 19 | 35 | 6 | 52 |
P value = 0.176 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 46 | 63 |
RHOA MUTATED | 2 | 2 | 7 |
RHOA WILD-TYPE | 64 | 44 | 56 |
P value = 0.872 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 68 | 67 |
RHOA MUTATED | 3 | 4 | 5 |
RHOA WILD-TYPE | 59 | 64 | 62 |
P value = 0.86 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 36 | 80 |
RHOA MUTATED | 4 | 2 | 6 |
RHOA WILD-TYPE | 77 | 34 | 74 |
P value = 0.558 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 48 | 43 | 30 | 30 | 44 |
RHOA MUTATED | 2 | 4 | 2 | 3 | 1 |
RHOA WILD-TYPE | 46 | 39 | 28 | 27 | 43 |
P value = 0.0531 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 77 | 65 |
RHOA MUTATED | 1 | 3 | 8 |
RHOA WILD-TYPE | 52 | 74 | 57 |
P value = 0.0035 (Fisher's exact test), Q value = 0.6
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 69 | 67 |
RHOA MUTATED | 4 | 9 | 0 |
RHOA WILD-TYPE | 80 | 60 | 67 |
P value = 0.0848 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 54 | 94 |
RHOA MUTATED | 8 | 1 | 4 |
RHOA WILD-TYPE | 64 | 53 | 90 |
P value = 0.00268 (Fisher's exact test), Q value = 0.46
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 69 | 51 |
RHOA MUTATED | 4 | 0 | 7 |
RHOA WILD-TYPE | 52 | 69 | 44 |
P value = 0.038 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 84 | 50 |
RHOA MUTATED | 1 | 3 | 7 |
RHOA WILD-TYPE | 41 | 81 | 43 |
P value = 0.198 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 20 | 37 | 6 | 52 |
IRF2 MUTATED | 10 | 1 | 0 | 1 | 2 |
IRF2 WILD-TYPE | 94 | 19 | 37 | 5 | 50 |
P value = 0.28 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 46 | 63 |
IRF2 MUTATED | 6 | 1 | 2 |
IRF2 WILD-TYPE | 60 | 45 | 61 |
P value = 0.0641 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 68 | 67 |
IRF2 MUTATED | 8 | 2 | 3 |
IRF2 WILD-TYPE | 54 | 66 | 64 |
P value = 0.764 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 36 | 80 |
IRF2 MUTATED | 6 | 3 | 4 |
IRF2 WILD-TYPE | 75 | 33 | 76 |
P value = 0.21 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 48 | 43 | 30 | 30 | 44 |
IRF2 MUTATED | 6 | 2 | 1 | 1 | 1 |
IRF2 WILD-TYPE | 42 | 41 | 29 | 29 | 43 |
P value = 0.632 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 77 | 65 |
IRF2 MUTATED | 2 | 6 | 3 |
IRF2 WILD-TYPE | 51 | 71 | 62 |
P value = 0.0301 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 69 | 67 |
IRF2 MUTATED | 10 | 1 | 3 |
IRF2 WILD-TYPE | 74 | 68 | 64 |
P value = 0.0244 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 54 | 94 |
IRF2 MUTATED | 4 | 0 | 10 |
IRF2 WILD-TYPE | 68 | 54 | 84 |
P value = 0.123 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 69 | 51 |
IRF2 MUTATED | 4 | 5 | 0 |
IRF2 WILD-TYPE | 52 | 64 | 51 |
P value = 0.0866 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 84 | 50 |
IRF2 MUTATED | 2 | 7 | 0 |
IRF2 WILD-TYPE | 40 | 77 | 50 |
P value = 0.0792 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 20 | 37 | 6 | 52 |
CDH1 MUTATED | 13 | 1 | 3 | 0 | 0 |
CDH1 WILD-TYPE | 91 | 19 | 34 | 6 | 52 |
P value = 0.494 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 46 | 63 |
CDH1 MUTATED | 5 | 2 | 7 |
CDH1 WILD-TYPE | 61 | 44 | 56 |
P value = 0.574 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 68 | 67 |
CDH1 MUTATED | 4 | 8 | 6 |
CDH1 WILD-TYPE | 58 | 60 | 61 |
P value = 0.64 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 36 | 80 |
CDH1 MUTATED | 7 | 2 | 9 |
CDH1 WILD-TYPE | 74 | 34 | 71 |
P value = 0.11 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 48 | 43 | 30 | 30 | 44 |
CDH1 MUTATED | 2 | 7 | 1 | 4 | 2 |
CDH1 WILD-TYPE | 46 | 36 | 29 | 26 | 42 |
P value = 0.0575 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 77 | 65 |
CDH1 MUTATED | 1 | 6 | 9 |
CDH1 WILD-TYPE | 52 | 71 | 56 |
P value = 0.0261 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 69 | 67 |
CDH1 MUTATED | 8 | 9 | 1 |
CDH1 WILD-TYPE | 76 | 60 | 66 |
P value = 0.0495 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 54 | 94 |
CDH1 MUTATED | 10 | 1 | 7 |
CDH1 WILD-TYPE | 62 | 53 | 87 |
P value = 0.0791 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 69 | 51 |
CDH1 MUTATED | 5 | 2 | 7 |
CDH1 WILD-TYPE | 51 | 67 | 44 |
P value = 0.123 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 84 | 50 |
CDH1 MUTATED | 1 | 6 | 7 |
CDH1 WILD-TYPE | 41 | 78 | 43 |
P value = 0.0235 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 20 | 37 | 6 | 52 |
PTEN MUTATED | 12 | 0 | 0 | 1 | 1 |
PTEN WILD-TYPE | 92 | 20 | 37 | 5 | 51 |
P value = 0.28 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 46 | 63 |
PTEN MUTATED | 6 | 1 | 2 |
PTEN WILD-TYPE | 60 | 45 | 61 |
P value = 0.00434 (Fisher's exact test), Q value = 0.73
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 68 | 67 |
PTEN MUTATED | 8 | 0 | 5 |
PTEN WILD-TYPE | 54 | 68 | 62 |
P value = 0.0101 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 36 | 80 |
PTEN MUTATED | 10 | 2 | 1 |
PTEN WILD-TYPE | 71 | 34 | 79 |
P value = 0.000833 (Chi-square test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 48 | 43 | 30 | 30 | 44 |
PTEN MUTATED | 10 | 1 | 0 | 2 | 1 |
PTEN WILD-TYPE | 38 | 42 | 30 | 28 | 43 |
P value = 0.0121 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 77 | 65 |
PTEN MUTATED | 1 | 11 | 2 |
PTEN WILD-TYPE | 52 | 66 | 63 |
P value = 0.158 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 69 | 67 |
PTEN MUTATED | 9 | 2 | 3 |
PTEN WILD-TYPE | 75 | 67 | 64 |
P value = 0.012 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 54 | 94 |
PTEN MUTATED | 3 | 0 | 11 |
PTEN WILD-TYPE | 69 | 54 | 83 |
P value = 0.288 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 69 | 51 |
PTEN MUTATED | 5 | 3 | 1 |
PTEN WILD-TYPE | 51 | 66 | 50 |
P value = 0.00607 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 84 | 50 |
PTEN MUTATED | 0 | 9 | 0 |
PTEN WILD-TYPE | 42 | 75 | 50 |
P value = 0.0766 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 20 | 37 | 6 | 52 |
FBXW7 MUTATED | 15 | 1 | 1 | 0 | 2 |
FBXW7 WILD-TYPE | 89 | 19 | 36 | 6 | 50 |
P value = 0.0175 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 46 | 63 |
FBXW7 MUTATED | 11 | 2 | 2 |
FBXW7 WILD-TYPE | 55 | 44 | 61 |
P value = 0.00182 (Fisher's exact test), Q value = 0.32
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 68 | 67 |
FBXW7 MUTATED | 12 | 1 | 5 |
FBXW7 WILD-TYPE | 50 | 67 | 62 |
P value = 0.0142 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 36 | 80 |
FBXW7 MUTATED | 11 | 5 | 2 |
FBXW7 WILD-TYPE | 70 | 31 | 78 |
P value = 0.00743 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 48 | 43 | 30 | 30 | 44 |
FBXW7 MUTATED | 10 | 1 | 1 | 2 | 2 |
FBXW7 WILD-TYPE | 38 | 42 | 29 | 28 | 42 |
P value = 0.323 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 77 | 65 |
FBXW7 MUTATED | 4 | 9 | 3 |
FBXW7 WILD-TYPE | 49 | 68 | 62 |
P value = 0.155 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 69 | 67 |
FBXW7 MUTATED | 11 | 3 | 5 |
FBXW7 WILD-TYPE | 73 | 66 | 62 |
P value = 0.0696 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 54 | 94 |
FBXW7 MUTATED | 4 | 2 | 13 |
FBXW7 WILD-TYPE | 68 | 52 | 81 |
P value = 0.00949 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 69 | 51 |
FBXW7 MUTATED | 5 | 10 | 0 |
FBXW7 WILD-TYPE | 51 | 59 | 51 |
P value = 0.00256 (Fisher's exact test), Q value = 0.44
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 84 | 50 |
FBXW7 MUTATED | 2 | 13 | 0 |
FBXW7 WILD-TYPE | 40 | 71 | 50 |
P value = 0.0567 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 20 | 37 | 6 | 52 |
B2M MUTATED | 8 | 0 | 0 | 0 | 0 |
B2M WILD-TYPE | 96 | 20 | 37 | 6 | 52 |
P value = 0.013 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 46 | 63 |
B2M MUTATED | 7 | 0 | 1 |
B2M WILD-TYPE | 59 | 46 | 62 |
P value = 0.0861 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 68 | 67 |
B2M MUTATED | 4 | 0 | 3 |
B2M WILD-TYPE | 58 | 68 | 64 |
P value = 0.695 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 36 | 80 |
B2M MUTATED | 3 | 2 | 2 |
B2M WILD-TYPE | 78 | 34 | 78 |
P value = 0.0513 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 48 | 43 | 30 | 30 | 44 |
B2M MUTATED | 5 | 1 | 0 | 1 | 0 |
B2M WILD-TYPE | 43 | 42 | 30 | 29 | 44 |
P value = 0.3 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 77 | 65 |
B2M MUTATED | 1 | 5 | 1 |
B2M WILD-TYPE | 52 | 72 | 64 |
P value = 0.355 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 69 | 67 |
B2M MUTATED | 5 | 2 | 1 |
B2M WILD-TYPE | 79 | 67 | 66 |
P value = 0.149 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 54 | 94 |
B2M MUTATED | 2 | 0 | 6 |
B2M WILD-TYPE | 70 | 54 | 88 |
P value = 0.598 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 69 | 51 |
B2M MUTATED | 4 | 2 | 2 |
B2M WILD-TYPE | 52 | 67 | 49 |
P value = 0.103 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 84 | 50 |
B2M MUTATED | 0 | 7 | 1 |
B2M WILD-TYPE | 42 | 77 | 49 |
P value = 0.467 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 20 | 37 | 6 | 52 |
FAM46D MUTATED | 3 | 0 | 0 | 0 | 3 |
FAM46D WILD-TYPE | 101 | 20 | 37 | 6 | 49 |
P value = 0.742 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 46 | 63 |
FAM46D MUTATED | 1 | 2 | 2 |
FAM46D WILD-TYPE | 65 | 44 | 61 |
P value = 0.744 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 68 | 67 |
FAM46D MUTATED | 2 | 1 | 2 |
FAM46D WILD-TYPE | 60 | 67 | 65 |
P value = 0.109 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 36 | 80 |
FAM46D MUTATED | 3 | 2 | 0 |
FAM46D WILD-TYPE | 78 | 34 | 80 |
P value = 0.103 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 48 | 43 | 30 | 30 | 44 |
FAM46D MUTATED | 0 | 1 | 0 | 3 | 2 |
FAM46D WILD-TYPE | 48 | 42 | 30 | 27 | 42 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 77 | 65 |
FAM46D MUTATED | 2 | 2 | 2 |
FAM46D WILD-TYPE | 51 | 75 | 63 |
P value = 0.775 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 69 | 67 |
FAM46D MUTATED | 3 | 1 | 2 |
FAM46D WILD-TYPE | 81 | 68 | 65 |
P value = 0.67 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 54 | 94 |
FAM46D MUTATED | 1 | 2 | 3 |
FAM46D WILD-TYPE | 71 | 52 | 91 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 69 | 51 |
FAM46D MUTATED | 2 | 2 | 1 |
FAM46D WILD-TYPE | 54 | 67 | 50 |
P value = 0.714 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 84 | 50 |
FAM46D MUTATED | 2 | 2 | 1 |
FAM46D WILD-TYPE | 40 | 82 | 49 |
P value = 0.364 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 20 | 37 | 6 | 52 |
RNF43 MUTATED | 7 | 1 | 0 | 0 | 1 |
RNF43 WILD-TYPE | 97 | 19 | 37 | 6 | 51 |
P value = 0.881 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 46 | 63 |
RNF43 MUTATED | 3 | 1 | 2 |
RNF43 WILD-TYPE | 63 | 45 | 61 |
P value = 0.577 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 68 | 67 |
RNF43 MUTATED | 4 | 2 | 3 |
RNF43 WILD-TYPE | 58 | 66 | 64 |
P value = 0.113 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 36 | 80 |
RNF43 MUTATED | 5 | 3 | 1 |
RNF43 WILD-TYPE | 76 | 33 | 79 |
P value = 0.273 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 48 | 43 | 30 | 30 | 44 |
RNF43 MUTATED | 2 | 1 | 0 | 3 | 1 |
RNF43 WILD-TYPE | 46 | 42 | 30 | 27 | 43 |
P value = 0.798 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 77 | 65 |
RNF43 MUTATED | 1 | 3 | 3 |
RNF43 WILD-TYPE | 52 | 74 | 62 |
P value = 0.634 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 69 | 67 |
RNF43 MUTATED | 5 | 2 | 2 |
RNF43 WILD-TYPE | 79 | 67 | 65 |
P value = 0.181 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 54 | 94 |
RNF43 MUTATED | 3 | 0 | 6 |
RNF43 WILD-TYPE | 69 | 54 | 88 |
P value = 0.878 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 69 | 51 |
RNF43 MUTATED | 2 | 3 | 1 |
RNF43 WILD-TYPE | 54 | 66 | 50 |
P value = 0.274 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 84 | 50 |
RNF43 MUTATED | 0 | 5 | 1 |
RNF43 WILD-TYPE | 42 | 79 | 49 |
P value = 0.735 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 20 | 37 | 6 | 52 |
APC MUTATED | 16 | 4 | 3 | 1 | 9 |
APC WILD-TYPE | 88 | 16 | 34 | 5 | 43 |
P value = 0.0468 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 46 | 63 |
APC MUTATED | 12 | 7 | 3 |
APC WILD-TYPE | 54 | 39 | 60 |
P value = 0.0755 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 68 | 67 |
APC MUTATED | 13 | 5 | 11 |
APC WILD-TYPE | 49 | 63 | 56 |
P value = 0.0909 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 36 | 80 |
APC MUTATED | 17 | 5 | 7 |
APC WILD-TYPE | 64 | 31 | 73 |
P value = 0.302 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 48 | 43 | 30 | 30 | 44 |
APC MUTATED | 9 | 2 | 5 | 6 | 7 |
APC WILD-TYPE | 39 | 41 | 25 | 24 | 37 |
P value = 0.00248 (Fisher's exact test), Q value = 0.43
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 77 | 65 |
APC MUTATED | 5 | 20 | 4 |
APC WILD-TYPE | 48 | 57 | 61 |
P value = 0.0124 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 69 | 67 |
APC MUTATED | 19 | 4 | 10 |
APC WILD-TYPE | 65 | 65 | 57 |
P value = 0.00499 (Fisher's exact test), Q value = 0.83
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 54 | 94 |
APC MUTATED | 4 | 7 | 22 |
APC WILD-TYPE | 68 | 47 | 72 |
P value = 0.06 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 69 | 51 |
APC MUTATED | 8 | 12 | 2 |
APC WILD-TYPE | 48 | 57 | 49 |
P value = 0.00989 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 84 | 50 |
APC MUTATED | 5 | 16 | 1 |
APC WILD-TYPE | 37 | 68 | 49 |
P value = 0.305 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 20 | 37 | 6 | 52 |
WSB2 MUTATED | 6 | 0 | 1 | 0 | 0 |
WSB2 WILD-TYPE | 98 | 20 | 36 | 6 | 52 |
P value = 0.0759 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 46 | 63 |
WSB2 MUTATED | 5 | 0 | 1 |
WSB2 WILD-TYPE | 61 | 46 | 62 |
P value = 0.0861 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 68 | 67 |
WSB2 MUTATED | 4 | 0 | 3 |
WSB2 WILD-TYPE | 58 | 68 | 64 |
P value = 0.0629 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 36 | 80 |
WSB2 MUTATED | 5 | 2 | 0 |
WSB2 WILD-TYPE | 76 | 34 | 80 |
P value = 0.126 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 48 | 43 | 30 | 30 | 44 |
WSB2 MUTATED | 4 | 0 | 1 | 2 | 0 |
WSB2 WILD-TYPE | 44 | 43 | 29 | 28 | 44 |
P value = 0.0291 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 77 | 65 |
WSB2 MUTATED | 1 | 6 | 0 |
WSB2 WILD-TYPE | 52 | 71 | 65 |
P value = 0.00144 (Fisher's exact test), Q value = 0.26
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 69 | 67 |
WSB2 MUTATED | 7 | 0 | 0 |
WSB2 WILD-TYPE | 77 | 69 | 67 |
P value = 0.065 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 54 | 94 |
WSB2 MUTATED | 1 | 0 | 6 |
WSB2 WILD-TYPE | 71 | 54 | 88 |
P value = 0.132 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 69 | 51 |
WSB2 MUTATED | 4 | 2 | 0 |
WSB2 WILD-TYPE | 52 | 67 | 51 |
P value = 0.0464 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 84 | 50 |
WSB2 MUTATED | 0 | 6 | 0 |
WSB2 WILD-TYPE | 42 | 78 | 50 |
P value = 0.0504 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 20 | 37 | 6 | 52 |
MAP2K7 MUTATED | 12 | 1 | 1 | 0 | 0 |
MAP2K7 WILD-TYPE | 92 | 19 | 36 | 6 | 52 |
P value = 0.0614 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 46 | 63 |
MAP2K7 MUTATED | 8 | 1 | 2 |
MAP2K7 WILD-TYPE | 58 | 45 | 61 |
P value = 0.821 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 68 | 67 |
MAP2K7 MUTATED | 3 | 5 | 5 |
MAP2K7 WILD-TYPE | 59 | 63 | 62 |
P value = 0.764 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 36 | 80 |
MAP2K7 MUTATED | 6 | 3 | 4 |
MAP2K7 WILD-TYPE | 75 | 33 | 76 |
P value = 0.0501 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 48 | 43 | 30 | 30 | 44 |
MAP2K7 MUTATED | 7 | 3 | 1 | 0 | 1 |
MAP2K7 WILD-TYPE | 41 | 40 | 29 | 30 | 43 |
P value = 0.488 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 77 | 65 |
MAP2K7 MUTATED | 2 | 7 | 3 |
MAP2K7 WILD-TYPE | 51 | 70 | 62 |
P value = 0.158 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 69 | 67 |
MAP2K7 MUTATED | 9 | 2 | 3 |
MAP2K7 WILD-TYPE | 75 | 67 | 64 |
P value = 0.0964 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 54 | 94 |
MAP2K7 MUTATED | 3 | 1 | 10 |
MAP2K7 WILD-TYPE | 69 | 53 | 84 |
P value = 0.791 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 69 | 51 |
MAP2K7 MUTATED | 4 | 5 | 2 |
MAP2K7 WILD-TYPE | 52 | 64 | 49 |
P value = 0.261 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 84 | 50 |
MAP2K7 MUTATED | 1 | 8 | 2 |
MAP2K7 WILD-TYPE | 41 | 76 | 48 |
P value = 0.517 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 20 | 37 | 6 | 52 |
TRPS1 MUTATED | 16 | 2 | 2 | 1 | 9 |
TRPS1 WILD-TYPE | 88 | 18 | 35 | 5 | 43 |
P value = 0.0174 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 46 | 63 |
TRPS1 MUTATED | 14 | 5 | 3 |
TRPS1 WILD-TYPE | 52 | 41 | 60 |
P value = 0.111 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 68 | 67 |
TRPS1 MUTATED | 12 | 5 | 11 |
TRPS1 WILD-TYPE | 50 | 63 | 56 |
P value = 0.118 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 36 | 80 |
TRPS1 MUTATED | 13 | 8 | 7 |
TRPS1 WILD-TYPE | 68 | 28 | 73 |
P value = 0.0233 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 48 | 43 | 30 | 30 | 44 |
TRPS1 MUTATED | 12 | 2 | 1 | 4 | 7 |
TRPS1 WILD-TYPE | 36 | 41 | 29 | 26 | 37 |
P value = 0.235 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 77 | 65 |
TRPS1 MUTATED | 9 | 12 | 5 |
TRPS1 WILD-TYPE | 44 | 65 | 60 |
P value = 0.332 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 69 | 67 |
TRPS1 MUTATED | 13 | 6 | 11 |
TRPS1 WILD-TYPE | 71 | 63 | 56 |
P value = 0.665 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 54 | 94 |
TRPS1 MUTATED | 8 | 7 | 15 |
TRPS1 WILD-TYPE | 64 | 47 | 79 |
P value = 0.516 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 69 | 51 |
TRPS1 MUTATED | 8 | 10 | 4 |
TRPS1 WILD-TYPE | 48 | 59 | 47 |
P value = 0.118 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 84 | 50 |
TRPS1 MUTATED | 4 | 15 | 3 |
TRPS1 WILD-TYPE | 38 | 69 | 47 |
P value = 0.143 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 104 | 20 | 37 | 6 | 52 |
C13ORF33 MUTATED | 4 | 0 | 1 | 1 | 0 |
C13ORF33 WILD-TYPE | 100 | 20 | 36 | 5 | 52 |
P value = 0.00943 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 66 | 46 | 63 |
C13ORF33 MUTATED | 6 | 0 | 0 |
C13ORF33 WILD-TYPE | 60 | 46 | 63 |
P value = 0.0152 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 68 | 67 |
C13ORF33 MUTATED | 5 | 1 | 0 |
C13ORF33 WILD-TYPE | 57 | 67 | 67 |
P value = 0.0861 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 36 | 80 |
C13ORF33 MUTATED | 4 | 2 | 0 |
C13ORF33 WILD-TYPE | 77 | 34 | 80 |
P value = 0.141 (Chi-square test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 48 | 43 | 30 | 30 | 44 |
C13ORF33 MUTATED | 3 | 0 | 1 | 0 | 0 |
C13ORF33 WILD-TYPE | 45 | 43 | 29 | 30 | 44 |
P value = 0.46 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 77 | 65 |
C13ORF33 MUTATED | 0 | 3 | 1 |
C13ORF33 WILD-TYPE | 53 | 74 | 64 |
P value = 0.515 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 69 | 67 |
C13ORF33 MUTATED | 1 | 3 | 2 |
C13ORF33 WILD-TYPE | 83 | 66 | 65 |
P value = 0.44 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 54 | 94 |
C13ORF33 MUTATED | 3 | 0 | 3 |
C13ORF33 WILD-TYPE | 69 | 54 | 91 |
P value = 0.216 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 56 | 69 | 51 |
C13ORF33 MUTATED | 0 | 4 | 2 |
C13ORF33 WILD-TYPE | 56 | 65 | 49 |
P value = 0.274 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 84 | 50 |
C13ORF33 MUTATED | 0 | 5 | 1 |
C13ORF33 WILD-TYPE | 42 | 79 | 49 |
-
Mutation data file = transformed.cor.cli.txt
-
Molecular subtypes file = STAD-TP.transferedmergedcluster.txt
-
Number of patients = 220
-
Number of significantly mutated genes = 20
-
Number of Molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For multi-class clinical features (nominal or ordinal), Chi-square tests (Greenwood and Nikulin 1996) were used to estimate the P values using the 'chisq.test' function in R
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.