This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.
Testing the association between mutation status of 17 genes and 12 molecular subtypes across 178 patients, 8 significant findings detected with P value < 0.05 and Q value < 0.25.
-
TP53 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
-
NFE2L2 mutation correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
-
KEAP1 mutation correlated to 'MRNA_CHIERARCHICAL'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nMutated (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
NFE2L2 | 27 (15%) | 151 |
0.00019 (0.0344) |
0.00017 (0.0309) |
0.0175 (1.00) |
0.0374 (1.00) |
0.255 (1.00) |
0.737 (1.00) |
1e-05 (0.00186) |
1e-05 (0.00186) |
0.0289 (1.00) |
2e-05 (0.00368) |
0.591 (1.00) |
0.114 (1.00) |
TP53 | 141 (79%) | 37 |
0.0452 (1.00) |
0.0261 (1.00) |
0.0001 (0.0183) |
0.00141 (0.251) |
1 (1.00) |
0.698 (1.00) |
0.00124 (0.222) |
0.0456 (1.00) |
0.136 (1.00) |
0.325 (1.00) |
0.823 (1.00) |
0.392 (1.00) |
KEAP1 | 22 (12%) | 156 |
0.00154 (0.271) |
0.00049 (0.0882) |
0.165 (1.00) |
0.0758 (1.00) |
0.203 (1.00) |
0.148 (1.00) |
0.0733 (1.00) |
0.0162 (1.00) |
0.698 (1.00) |
0.248 (1.00) |
0.00522 (0.913) |
0.851 (1.00) |
CDKN2A | 26 (15%) | 152 |
0.00144 (0.255) |
0.00556 (0.967) |
0.0181 (1.00) |
0.668 (1.00) |
0.341 (1.00) |
0.169 (1.00) |
0.384 (1.00) |
0.451 (1.00) |
0.783 (1.00) |
0.52 (1.00) |
1 (1.00) |
0.974 (1.00) |
PTEN | 14 (8%) | 164 |
0.38 (1.00) |
0.324 (1.00) |
0.466 (1.00) |
0.133 (1.00) |
0.72 (1.00) |
0.96 (1.00) |
0.626 (1.00) |
0.446 (1.00) |
0.572 (1.00) |
0.488 (1.00) |
0.357 (1.00) |
0.789 (1.00) |
PIK3CA | 27 (15%) | 151 |
0.689 (1.00) |
0.754 (1.00) |
0.451 (1.00) |
0.547 (1.00) |
1 (1.00) |
0.664 (1.00) |
0.331 (1.00) |
0.392 (1.00) |
0.613 (1.00) |
0.597 (1.00) |
0.455 (1.00) |
0.956 (1.00) |
MLL2 | 35 (20%) | 143 |
0.17 (1.00) |
0.464 (1.00) |
0.246 (1.00) |
0.314 (1.00) |
0.696 (1.00) |
0.362 (1.00) |
0.349 (1.00) |
0.301 (1.00) |
0.948 (1.00) |
1 (1.00) |
0.612 (1.00) |
0.139 (1.00) |
RB1 | 12 (7%) | 166 |
0.315 (1.00) |
0.644 (1.00) |
0.45 (1.00) |
0.108 (1.00) |
0.655 (1.00) |
0.48 (1.00) |
0.569 (1.00) |
0.421 (1.00) |
0.574 (1.00) |
0.533 (1.00) |
||
IBTK | 5 (3%) | 173 |
0.491 (1.00) |
0.848 (1.00) |
0.74 (1.00) |
0.807 (1.00) |
0.43 (1.00) |
1 (1.00) |
0.847 (1.00) |
|||||
CYP11B1 | 15 (8%) | 163 |
0.651 (1.00) |
0.681 (1.00) |
1 (1.00) |
0.126 (1.00) |
0.243 (1.00) |
0.0951 (1.00) |
0.637 (1.00) |
0.363 (1.00) |
0.585 (1.00) |
0.805 (1.00) |
0.187 (1.00) |
0.526 (1.00) |
NOTCH1 | 14 (8%) | 164 |
0.815 (1.00) |
0.606 (1.00) |
0.535 (1.00) |
0.0343 (1.00) |
0.591 (1.00) |
0.629 (1.00) |
0.744 (1.00) |
0.364 (1.00) |
0.183 (1.00) |
0.18 (1.00) |
0.485 (1.00) |
0.0366 (1.00) |
SLC28A1 | 9 (5%) | 169 |
0.0135 (1.00) |
0.0497 (1.00) |
0.0359 (1.00) |
0.135 (1.00) |
0.321 (1.00) |
0.525 (1.00) |
0.0446 (1.00) |
0.00807 (1.00) |
0.125 (1.00) |
0.505 (1.00) |
0.536 (1.00) |
0.283 (1.00) |
ASB5 | 9 (5%) | 169 |
0.492 (1.00) |
0.552 (1.00) |
0.279 (1.00) |
0.474 (1.00) |
1 (1.00) |
0.476 (1.00) |
0.495 (1.00) |
0.438 (1.00) |
0.358 (1.00) |
|||
CPS1 | 25 (14%) | 153 |
0.765 (1.00) |
0.236 (1.00) |
0.521 (1.00) |
0.892 (1.00) |
0.73 (1.00) |
0.497 (1.00) |
1 (1.00) |
0.783 (1.00) |
0.0723 (1.00) |
0.345 (1.00) |
1 (1.00) |
0.428 (1.00) |
EP300 | 8 (4%) | 170 |
0.146 (1.00) |
0.119 (1.00) |
0.383 (1.00) |
0.358 (1.00) |
1 (1.00) |
0.0925 (1.00) |
0.416 (1.00) |
0.44 (1.00) |
0.311 (1.00) |
|||
ARID1A | 12 (7%) | 166 |
0.311 (1.00) |
0.55 (1.00) |
0.807 (1.00) |
0.353 (1.00) |
0.496 (1.00) |
0.599 (1.00) |
0.135 (1.00) |
0.635 (1.00) |
0.175 (1.00) |
0.692 (1.00) |
||
FBXW7 | 10 (6%) | 168 |
0.493 (1.00) |
0.829 (1.00) |
0.551 (1.00) |
0.619 (1.00) |
0.789 (1.00) |
0.835 (1.00) |
0.636 (1.00) |
0.935 (1.00) |
0.364 (1.00) |
P value = 0.0452 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 48 | 17 | 19 |
TP53 MUTATED | 29 | 43 | 10 | 14 |
TP53 WILD-TYPE | 8 | 5 | 7 | 5 |
P value = 0.0261 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
TP53 MUTATED | 30 | 47 | 19 |
TP53 WILD-TYPE | 11 | 5 | 9 |
P value = 1e-04 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 69 | 47 |
TP53 MUTATED | 38 | 63 | 40 |
TP53 WILD-TYPE | 24 | 6 | 7 |
P value = 0.00141 (Fisher's exact test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 29 | 18 |
TP53 MUTATED | 16 | 28 | 15 |
TP53 WILD-TYPE | 11 | 1 | 3 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 47 | 31 |
TP53 MUTATED | 26 | 37 | 24 |
TP53 WILD-TYPE | 8 | 10 | 7 |
P value = 0.698 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 29 | 22 | 34 | 27 |
TP53 MUTATED | 21 | 16 | 28 | 22 |
TP53 WILD-TYPE | 8 | 6 | 6 | 5 |
P value = 0.00124 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 61 | 51 | 27 |
TP53 MUTATED | 30 | 55 | 42 | 14 |
TP53 WILD-TYPE | 9 | 6 | 9 | 13 |
P value = 0.0456 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 62 | 35 |
TP53 MUTATED | 58 | 55 | 28 |
TP53 WILD-TYPE | 23 | 7 | 7 |
P value = 0.136 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 100 | 16 | 23 | 23 |
TP53 MUTATED | 83 | 14 | 15 | 21 |
TP53 WILD-TYPE | 17 | 2 | 8 | 2 |
P value = 0.325 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 74 | 57 |
TP53 MUTATED | 27 | 57 | 49 |
TP53 WILD-TYPE | 4 | 17 | 8 |
P value = 0.823 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 18 | 19 |
TP53 MUTATED | 13 | 14 | 15 |
TP53 WILD-TYPE | 2 | 4 | 4 |
P value = 0.392 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 3 | 3 | 13 | 10 | 7 | 5 | 2 | 4 |
TP53 MUTATED | 4 | 3 | 1 | 9 | 9 | 5 | 5 | 2 | 4 |
TP53 WILD-TYPE | 1 | 0 | 2 | 4 | 1 | 2 | 0 | 0 | 0 |
P value = 0.00019 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 48 | 17 | 19 |
NFE2L2 MUTATED | 0 | 14 | 1 | 1 |
NFE2L2 WILD-TYPE | 37 | 34 | 16 | 18 |
P value = 0.00017 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
NFE2L2 MUTATED | 0 | 14 | 2 |
NFE2L2 WILD-TYPE | 41 | 38 | 26 |
P value = 0.0175 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 69 | 47 |
NFE2L2 MUTATED | 7 | 17 | 3 |
NFE2L2 WILD-TYPE | 55 | 52 | 44 |
P value = 0.0374 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 29 | 18 |
NFE2L2 MUTATED | 4 | 8 | 0 |
NFE2L2 WILD-TYPE | 23 | 21 | 18 |
P value = 0.255 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 47 | 31 |
NFE2L2 MUTATED | 8 | 5 | 6 |
NFE2L2 WILD-TYPE | 26 | 42 | 25 |
P value = 0.737 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 29 | 22 | 34 | 27 |
NFE2L2 MUTATED | 5 | 5 | 4 | 5 |
NFE2L2 WILD-TYPE | 24 | 17 | 30 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 61 | 51 | 27 |
NFE2L2 MUTATED | 2 | 21 | 1 | 3 |
NFE2L2 WILD-TYPE | 37 | 40 | 50 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 62 | 35 |
NFE2L2 MUTATED | 4 | 22 | 1 |
NFE2L2 WILD-TYPE | 77 | 40 | 34 |
P value = 0.0289 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 100 | 16 | 23 | 23 |
NFE2L2 MUTATED | 15 | 0 | 3 | 8 |
NFE2L2 WILD-TYPE | 85 | 16 | 20 | 15 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 74 | 57 |
NFE2L2 MUTATED | 15 | 9 | 2 |
NFE2L2 WILD-TYPE | 16 | 65 | 55 |
P value = 0.591 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 18 | 19 |
NFE2L2 MUTATED | 4 | 2 | 3 |
NFE2L2 WILD-TYPE | 11 | 16 | 16 |
P value = 0.114 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 3 | 3 | 13 | 10 | 7 | 5 | 2 | 4 |
NFE2L2 MUTATED | 2 | 0 | 0 | 2 | 0 | 2 | 3 | 0 | 0 |
NFE2L2 WILD-TYPE | 3 | 3 | 3 | 11 | 10 | 5 | 2 | 2 | 4 |
P value = 0.00144 (Fisher's exact test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 48 | 17 | 19 |
CDKN2A MUTATED | 0 | 13 | 3 | 2 |
CDKN2A WILD-TYPE | 37 | 35 | 14 | 17 |
P value = 0.00556 (Fisher's exact test), Q value = 0.97
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
CDKN2A MUTATED | 1 | 13 | 4 |
CDKN2A WILD-TYPE | 40 | 39 | 24 |
P value = 0.0181 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 69 | 47 |
CDKN2A MUTATED | 3 | 14 | 9 |
CDKN2A WILD-TYPE | 59 | 55 | 38 |
P value = 0.668 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 29 | 18 |
CDKN2A MUTATED | 2 | 4 | 3 |
CDKN2A WILD-TYPE | 25 | 25 | 15 |
P value = 0.341 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 47 | 31 |
CDKN2A MUTATED | 2 | 8 | 3 |
CDKN2A WILD-TYPE | 32 | 39 | 28 |
P value = 0.169 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 29 | 22 | 34 | 27 |
CDKN2A MUTATED | 2 | 5 | 5 | 1 |
CDKN2A WILD-TYPE | 27 | 17 | 29 | 26 |
P value = 0.384 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 61 | 51 | 27 |
CDKN2A MUTATED | 4 | 12 | 5 | 5 |
CDKN2A WILD-TYPE | 35 | 49 | 46 | 22 |
P value = 0.451 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 62 | 35 |
CDKN2A MUTATED | 10 | 12 | 4 |
CDKN2A WILD-TYPE | 71 | 50 | 31 |
P value = 0.783 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 100 | 16 | 23 | 23 |
CDKN2A MUTATED | 15 | 3 | 2 | 4 |
CDKN2A WILD-TYPE | 85 | 13 | 21 | 19 |
P value = 0.52 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 74 | 57 |
CDKN2A MUTATED | 4 | 9 | 11 |
CDKN2A WILD-TYPE | 27 | 65 | 46 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 18 | 19 |
CDKN2A MUTATED | 2 | 2 | 3 |
CDKN2A WILD-TYPE | 13 | 16 | 16 |
P value = 0.974 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 3 | 3 | 13 | 10 | 7 | 5 | 2 | 4 |
CDKN2A MUTATED | 1 | 0 | 0 | 1 | 2 | 1 | 1 | 0 | 1 |
CDKN2A WILD-TYPE | 4 | 3 | 3 | 12 | 8 | 6 | 4 | 2 | 3 |
P value = 0.00154 (Fisher's exact test), Q value = 0.27
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 48 | 17 | 19 |
KEAP1 MUTATED | 0 | 12 | 1 | 4 |
KEAP1 WILD-TYPE | 37 | 36 | 16 | 15 |
P value = 0.00049 (Fisher's exact test), Q value = 0.088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
KEAP1 MUTATED | 0 | 13 | 4 |
KEAP1 WILD-TYPE | 41 | 39 | 24 |
P value = 0.165 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 69 | 47 |
KEAP1 MUTATED | 4 | 12 | 6 |
KEAP1 WILD-TYPE | 58 | 57 | 41 |
P value = 0.0758 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 29 | 18 |
KEAP1 MUTATED | 0 | 4 | 3 |
KEAP1 WILD-TYPE | 27 | 25 | 15 |
P value = 0.203 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 47 | 31 |
KEAP1 MUTATED | 5 | 2 | 4 |
KEAP1 WILD-TYPE | 29 | 45 | 27 |
P value = 0.148 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 29 | 22 | 34 | 27 |
KEAP1 MUTATED | 4 | 1 | 1 | 5 |
KEAP1 WILD-TYPE | 25 | 21 | 33 | 22 |
P value = 0.0733 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 61 | 51 | 27 |
KEAP1 MUTATED | 1 | 12 | 6 | 3 |
KEAP1 WILD-TYPE | 38 | 49 | 45 | 24 |
P value = 0.0162 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 62 | 35 |
KEAP1 MUTATED | 4 | 11 | 7 |
KEAP1 WILD-TYPE | 77 | 51 | 28 |
P value = 0.698 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 100 | 16 | 23 | 23 |
KEAP1 MUTATED | 13 | 1 | 1 | 3 |
KEAP1 WILD-TYPE | 87 | 15 | 22 | 20 |
P value = 0.248 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 74 | 57 |
KEAP1 MUTATED | 4 | 5 | 9 |
KEAP1 WILD-TYPE | 27 | 69 | 48 |
P value = 0.00522 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 18 | 19 |
KEAP1 MUTATED | 4 | 0 | 0 |
KEAP1 WILD-TYPE | 11 | 18 | 19 |
P value = 0.851 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 3 | 3 | 13 | 10 | 7 | 5 | 2 | 4 |
KEAP1 MUTATED | 1 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 0 |
KEAP1 WILD-TYPE | 4 | 3 | 3 | 12 | 8 | 7 | 5 | 2 | 4 |
P value = 0.38 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 48 | 17 | 19 |
PTEN MUTATED | 4 | 2 | 0 | 2 |
PTEN WILD-TYPE | 33 | 46 | 17 | 17 |
P value = 0.324 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
PTEN MUTATED | 5 | 2 | 1 |
PTEN WILD-TYPE | 36 | 50 | 27 |
P value = 0.466 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 69 | 47 |
PTEN MUTATED | 7 | 4 | 3 |
PTEN WILD-TYPE | 55 | 65 | 44 |
P value = 0.133 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 29 | 18 |
PTEN MUTATED | 5 | 3 | 0 |
PTEN WILD-TYPE | 22 | 26 | 18 |
P value = 0.72 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 47 | 31 |
PTEN MUTATED | 3 | 4 | 1 |
PTEN WILD-TYPE | 31 | 43 | 30 |
P value = 0.96 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 29 | 22 | 34 | 27 |
PTEN MUTATED | 2 | 2 | 2 | 2 |
PTEN WILD-TYPE | 27 | 20 | 32 | 25 |
P value = 0.626 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 61 | 51 | 27 |
PTEN MUTATED | 4 | 3 | 4 | 3 |
PTEN WILD-TYPE | 35 | 58 | 47 | 24 |
P value = 0.446 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 62 | 35 |
PTEN MUTATED | 7 | 3 | 4 |
PTEN WILD-TYPE | 74 | 59 | 31 |
P value = 0.572 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 100 | 16 | 23 | 23 |
PTEN MUTATED | 9 | 1 | 2 | 0 |
PTEN WILD-TYPE | 91 | 15 | 21 | 23 |
P value = 0.488 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 74 | 57 |
PTEN MUTATED | 1 | 5 | 6 |
PTEN WILD-TYPE | 30 | 69 | 51 |
P value = 0.357 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 18 | 19 |
PTEN MUTATED | 0 | 2 | 3 |
PTEN WILD-TYPE | 15 | 16 | 16 |
P value = 0.789 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 3 | 3 | 13 | 10 | 7 | 5 | 2 | 4 |
PTEN MUTATED | 0 | 0 | 0 | 1 | 2 | 2 | 0 | 0 | 0 |
PTEN WILD-TYPE | 5 | 3 | 3 | 12 | 8 | 5 | 5 | 2 | 4 |
P value = 0.689 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 48 | 17 | 19 |
PIK3CA MUTATED | 4 | 6 | 3 | 4 |
PIK3CA WILD-TYPE | 33 | 42 | 14 | 15 |
P value = 0.754 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
PIK3CA MUTATED | 7 | 6 | 4 |
PIK3CA WILD-TYPE | 34 | 46 | 24 |
P value = 0.451 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 69 | 47 |
PIK3CA MUTATED | 12 | 8 | 7 |
PIK3CA WILD-TYPE | 50 | 61 | 40 |
P value = 0.547 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 29 | 18 |
PIK3CA MUTATED | 4 | 3 | 4 |
PIK3CA WILD-TYPE | 23 | 26 | 14 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 47 | 31 |
PIK3CA MUTATED | 5 | 7 | 5 |
PIK3CA WILD-TYPE | 29 | 40 | 26 |
P value = 0.664 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 29 | 22 | 34 | 27 |
PIK3CA MUTATED | 5 | 2 | 7 | 3 |
PIK3CA WILD-TYPE | 24 | 20 | 27 | 24 |
P value = 0.331 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 61 | 51 | 27 |
PIK3CA MUTATED | 8 | 7 | 10 | 2 |
PIK3CA WILD-TYPE | 31 | 54 | 41 | 25 |
P value = 0.392 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 62 | 35 |
PIK3CA MUTATED | 11 | 8 | 8 |
PIK3CA WILD-TYPE | 70 | 54 | 27 |
P value = 0.613 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 100 | 16 | 23 | 23 |
PIK3CA MUTATED | 18 | 2 | 2 | 2 |
PIK3CA WILD-TYPE | 82 | 14 | 21 | 21 |
P value = 0.597 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 74 | 57 |
PIK3CA MUTATED | 3 | 13 | 8 |
PIK3CA WILD-TYPE | 28 | 61 | 49 |
P value = 0.455 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 18 | 19 |
PIK3CA MUTATED | 4 | 4 | 2 |
PIK3CA WILD-TYPE | 11 | 14 | 17 |
P value = 0.956 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 3 | 3 | 13 | 10 | 7 | 5 | 2 | 4 |
PIK3CA MUTATED | 1 | 1 | 0 | 2 | 2 | 1 | 1 | 1 | 1 |
PIK3CA WILD-TYPE | 4 | 2 | 3 | 11 | 8 | 6 | 4 | 1 | 3 |
P value = 0.17 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 48 | 17 | 19 |
MLL2 MUTATED | 4 | 10 | 6 | 5 |
MLL2 WILD-TYPE | 33 | 38 | 11 | 14 |
P value = 0.464 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
MLL2 MUTATED | 6 | 13 | 6 |
MLL2 WILD-TYPE | 35 | 39 | 22 |
P value = 0.246 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 69 | 47 |
MLL2 MUTATED | 8 | 16 | 11 |
MLL2 WILD-TYPE | 54 | 53 | 36 |
P value = 0.314 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 29 | 18 |
MLL2 MUTATED | 6 | 6 | 1 |
MLL2 WILD-TYPE | 21 | 23 | 17 |
P value = 0.696 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 47 | 31 |
MLL2 MUTATED | 6 | 9 | 8 |
MLL2 WILD-TYPE | 28 | 38 | 23 |
P value = 0.362 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 29 | 22 | 34 | 27 |
MLL2 MUTATED | 6 | 7 | 7 | 3 |
MLL2 WILD-TYPE | 23 | 15 | 27 | 24 |
P value = 0.349 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 61 | 51 | 27 |
MLL2 MUTATED | 4 | 15 | 11 | 5 |
MLL2 WILD-TYPE | 35 | 46 | 40 | 22 |
P value = 0.301 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 62 | 35 |
MLL2 MUTATED | 12 | 15 | 8 |
MLL2 WILD-TYPE | 69 | 47 | 27 |
P value = 0.948 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 100 | 16 | 23 | 23 |
MLL2 MUTATED | 17 | 3 | 4 | 5 |
MLL2 WILD-TYPE | 83 | 13 | 19 | 18 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 74 | 57 |
MLL2 MUTATED | 5 | 14 | 10 |
MLL2 WILD-TYPE | 26 | 60 | 47 |
P value = 0.612 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 18 | 19 |
MLL2 MUTATED | 2 | 5 | 3 |
MLL2 WILD-TYPE | 13 | 13 | 16 |
P value = 0.139 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 3 | 3 | 13 | 10 | 7 | 5 | 2 | 4 |
MLL2 MUTATED | 0 | 2 | 0 | 3 | 1 | 1 | 3 | 0 | 0 |
MLL2 WILD-TYPE | 5 | 1 | 3 | 10 | 9 | 6 | 2 | 2 | 4 |
P value = 0.315 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 48 | 17 | 19 |
RB1 MUTATED | 2 | 5 | 0 | 3 |
RB1 WILD-TYPE | 35 | 43 | 17 | 16 |
P value = 0.644 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
RB1 MUTATED | 2 | 5 | 3 |
RB1 WILD-TYPE | 39 | 47 | 25 |
P value = 0.45 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 69 | 47 |
RB1 MUTATED | 4 | 3 | 5 |
RB1 WILD-TYPE | 58 | 66 | 42 |
P value = 0.108 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 29 | 18 |
RB1 MUTATED | 0 | 4 | 1 |
RB1 WILD-TYPE | 27 | 25 | 17 |
P value = 0.655 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 47 | 31 |
RB1 MUTATED | 3 | 2 | 1 |
RB1 WILD-TYPE | 31 | 45 | 30 |
P value = 0.48 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 29 | 22 | 34 | 27 |
RB1 MUTATED | 1 | 0 | 2 | 3 |
RB1 WILD-TYPE | 28 | 22 | 32 | 24 |
P value = 0.569 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 61 | 51 | 27 |
RB1 MUTATED | 1 | 4 | 4 | 3 |
RB1 WILD-TYPE | 38 | 57 | 47 | 24 |
P value = 0.421 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 62 | 35 |
RB1 MUTATED | 4 | 4 | 4 |
RB1 WILD-TYPE | 77 | 58 | 31 |
P value = 0.574 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 100 | 16 | 23 | 23 |
RB1 MUTATED | 9 | 1 | 0 | 2 |
RB1 WILD-TYPE | 91 | 15 | 23 | 21 |
P value = 0.533 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 74 | 57 |
RB1 MUTATED | 2 | 4 | 6 |
RB1 WILD-TYPE | 29 | 70 | 51 |
P value = 0.491 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 48 | 17 | 19 |
IBTK MUTATED | 1 | 2 | 0 | 2 |
IBTK WILD-TYPE | 36 | 46 | 17 | 17 |
P value = 0.848 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
IBTK MUTATED | 1 | 3 | 1 |
IBTK WILD-TYPE | 40 | 49 | 27 |
P value = 0.74 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 69 | 47 |
IBTK MUTATED | 1 | 3 | 1 |
IBTK WILD-TYPE | 61 | 66 | 46 |
P value = 0.807 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 61 | 51 | 27 |
IBTK MUTATED | 1 | 3 | 1 | 0 |
IBTK WILD-TYPE | 38 | 58 | 50 | 27 |
P value = 0.43 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 62 | 35 |
IBTK MUTATED | 1 | 3 | 1 |
IBTK WILD-TYPE | 80 | 59 | 34 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 100 | 16 | 23 | 23 |
IBTK MUTATED | 4 | 0 | 0 | 1 |
IBTK WILD-TYPE | 96 | 16 | 23 | 22 |
P value = 0.847 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 74 | 57 |
IBTK MUTATED | 1 | 3 | 1 |
IBTK WILD-TYPE | 30 | 71 | 56 |
P value = 0.651 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 48 | 17 | 19 |
CYP11B1 MUTATED | 3 | 5 | 3 | 1 |
CYP11B1 WILD-TYPE | 34 | 43 | 14 | 18 |
P value = 0.681 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
CYP11B1 MUTATED | 3 | 5 | 4 |
CYP11B1 WILD-TYPE | 38 | 47 | 24 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 69 | 47 |
CYP11B1 MUTATED | 5 | 6 | 4 |
CYP11B1 WILD-TYPE | 57 | 63 | 43 |
P value = 0.126 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 29 | 18 |
CYP11B1 MUTATED | 3 | 0 | 1 |
CYP11B1 WILD-TYPE | 24 | 29 | 17 |
P value = 0.243 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 47 | 31 |
CYP11B1 MUTATED | 5 | 2 | 2 |
CYP11B1 WILD-TYPE | 29 | 45 | 29 |
P value = 0.0951 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 29 | 22 | 34 | 27 |
CYP11B1 MUTATED | 4 | 0 | 1 | 4 |
CYP11B1 WILD-TYPE | 25 | 22 | 33 | 23 |
P value = 0.637 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 61 | 51 | 27 |
CYP11B1 MUTATED | 2 | 4 | 6 | 3 |
CYP11B1 WILD-TYPE | 37 | 57 | 45 | 24 |
P value = 0.363 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 62 | 35 |
CYP11B1 MUTATED | 6 | 4 | 5 |
CYP11B1 WILD-TYPE | 75 | 58 | 30 |
P value = 0.585 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 100 | 16 | 23 | 23 |
CYP11B1 MUTATED | 7 | 2 | 1 | 3 |
CYP11B1 WILD-TYPE | 93 | 14 | 22 | 20 |
P value = 0.805 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 74 | 57 |
CYP11B1 MUTATED | 3 | 5 | 5 |
CYP11B1 WILD-TYPE | 28 | 69 | 52 |
P value = 0.187 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 18 | 19 |
CYP11B1 MUTATED | 2 | 1 | 0 |
CYP11B1 WILD-TYPE | 13 | 17 | 19 |
P value = 0.526 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 3 | 3 | 13 | 10 | 7 | 5 | 2 | 4 |
CYP11B1 MUTATED | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 |
CYP11B1 WILD-TYPE | 4 | 3 | 3 | 12 | 10 | 7 | 5 | 2 | 3 |
P value = 0.815 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 48 | 17 | 19 |
NOTCH1 MUTATED | 1 | 4 | 1 | 1 |
NOTCH1 WILD-TYPE | 36 | 44 | 16 | 18 |
P value = 0.606 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
NOTCH1 MUTATED | 1 | 4 | 2 |
NOTCH1 WILD-TYPE | 40 | 48 | 26 |
P value = 0.535 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 69 | 47 |
NOTCH1 MUTATED | 3 | 7 | 4 |
NOTCH1 WILD-TYPE | 59 | 62 | 43 |
P value = 0.0343 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 29 | 18 |
NOTCH1 MUTATED | 0 | 4 | 4 |
NOTCH1 WILD-TYPE | 27 | 25 | 14 |
P value = 0.591 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 47 | 31 |
NOTCH1 MUTATED | 1 | 4 | 3 |
NOTCH1 WILD-TYPE | 33 | 43 | 28 |
P value = 0.629 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 29 | 22 | 34 | 27 |
NOTCH1 MUTATED | 2 | 3 | 2 | 1 |
NOTCH1 WILD-TYPE | 27 | 19 | 32 | 26 |
P value = 0.744 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 61 | 51 | 27 |
NOTCH1 MUTATED | 2 | 6 | 5 | 1 |
NOTCH1 WILD-TYPE | 37 | 55 | 46 | 26 |
P value = 0.364 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 62 | 35 |
NOTCH1 MUTATED | 4 | 7 | 3 |
NOTCH1 WILD-TYPE | 77 | 55 | 32 |
P value = 0.183 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 100 | 16 | 23 | 23 |
NOTCH1 MUTATED | 8 | 3 | 0 | 2 |
NOTCH1 WILD-TYPE | 92 | 13 | 23 | 21 |
P value = 0.18 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 74 | 57 |
NOTCH1 MUTATED | 4 | 3 | 6 |
NOTCH1 WILD-TYPE | 27 | 71 | 51 |
P value = 0.485 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 18 | 19 |
NOTCH1 MUTATED | 3 | 1 | 2 |
NOTCH1 WILD-TYPE | 12 | 17 | 17 |
P value = 0.0366 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 3 | 3 | 13 | 10 | 7 | 5 | 2 | 4 |
NOTCH1 MUTATED | 2 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 2 |
NOTCH1 WILD-TYPE | 3 | 2 | 3 | 13 | 9 | 7 | 5 | 2 | 2 |
P value = 0.0135 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 48 | 17 | 19 |
SLC28A1 MUTATED | 0 | 1 | 3 | 0 |
SLC28A1 WILD-TYPE | 37 | 47 | 14 | 19 |
P value = 0.0497 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
SLC28A1 MUTATED | 0 | 1 | 3 |
SLC28A1 WILD-TYPE | 41 | 51 | 25 |
P value = 0.0359 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 69 | 47 |
SLC28A1 MUTATED | 7 | 1 | 1 |
SLC28A1 WILD-TYPE | 55 | 68 | 46 |
P value = 0.135 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 29 | 18 |
SLC28A1 MUTATED | 3 | 0 | 2 |
SLC28A1 WILD-TYPE | 24 | 29 | 16 |
P value = 0.321 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 47 | 31 |
SLC28A1 MUTATED | 2 | 4 | 0 |
SLC28A1 WILD-TYPE | 32 | 43 | 31 |
P value = 0.525 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 29 | 22 | 34 | 27 |
SLC28A1 MUTATED | 2 | 1 | 3 | 0 |
SLC28A1 WILD-TYPE | 27 | 21 | 31 | 27 |
P value = 0.0446 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 61 | 51 | 27 |
SLC28A1 MUTATED | 3 | 0 | 5 | 1 |
SLC28A1 WILD-TYPE | 36 | 61 | 46 | 26 |
P value = 0.00807 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 62 | 35 |
SLC28A1 MUTATED | 4 | 0 | 5 |
SLC28A1 WILD-TYPE | 77 | 62 | 30 |
P value = 0.125 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 100 | 16 | 23 | 23 |
SLC28A1 MUTATED | 3 | 1 | 3 | 1 |
SLC28A1 WILD-TYPE | 97 | 15 | 20 | 22 |
P value = 0.505 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 74 | 57 |
SLC28A1 MUTATED | 0 | 5 | 3 |
SLC28A1 WILD-TYPE | 31 | 69 | 54 |
P value = 0.536 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 18 | 19 |
SLC28A1 MUTATED | 0 | 2 | 2 |
SLC28A1 WILD-TYPE | 15 | 16 | 17 |
P value = 0.283 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 3 | 3 | 13 | 10 | 7 | 5 | 2 | 4 |
SLC28A1 MUTATED | 0 | 1 | 1 | 2 | 0 | 0 | 0 | 0 | 0 |
SLC28A1 WILD-TYPE | 5 | 2 | 2 | 11 | 10 | 7 | 5 | 2 | 4 |
P value = 0.492 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 48 | 17 | 19 |
ASB5 MUTATED | 1 | 4 | 2 | 2 |
ASB5 WILD-TYPE | 36 | 44 | 15 | 17 |
P value = 0.552 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
ASB5 MUTATED | 2 | 4 | 3 |
ASB5 WILD-TYPE | 39 | 48 | 25 |
P value = 0.279 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 69 | 47 |
ASB5 MUTATED | 2 | 6 | 1 |
ASB5 WILD-TYPE | 60 | 63 | 46 |
P value = 0.474 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 47 | 31 |
ASB5 MUTATED | 2 | 1 | 0 |
ASB5 WILD-TYPE | 32 | 46 | 31 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 29 | 22 | 34 | 27 |
ASB5 MUTATED | 1 | 0 | 1 | 1 |
ASB5 WILD-TYPE | 28 | 22 | 33 | 26 |
P value = 0.476 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 61 | 51 | 27 |
ASB5 MUTATED | 1 | 4 | 4 | 0 |
ASB5 WILD-TYPE | 38 | 57 | 47 | 27 |
P value = 0.495 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 62 | 35 |
ASB5 MUTATED | 4 | 2 | 3 |
ASB5 WILD-TYPE | 77 | 60 | 32 |
P value = 0.438 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 100 | 16 | 23 | 23 |
ASB5 MUTATED | 7 | 0 | 0 | 0 |
ASB5 WILD-TYPE | 93 | 16 | 23 | 23 |
P value = 0.358 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 74 | 57 |
ASB5 MUTATED | 0 | 5 | 2 |
ASB5 WILD-TYPE | 31 | 69 | 55 |
P value = 0.765 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 48 | 17 | 19 |
CPS1 MUTATED | 5 | 8 | 4 | 2 |
CPS1 WILD-TYPE | 32 | 40 | 13 | 17 |
P value = 0.236 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
CPS1 MUTATED | 4 | 8 | 7 |
CPS1 WILD-TYPE | 37 | 44 | 21 |
P value = 0.521 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 69 | 47 |
CPS1 MUTATED | 7 | 9 | 9 |
CPS1 WILD-TYPE | 55 | 60 | 38 |
P value = 0.892 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 29 | 18 |
CPS1 MUTATED | 3 | 3 | 1 |
CPS1 WILD-TYPE | 24 | 26 | 17 |
P value = 0.73 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 47 | 31 |
CPS1 MUTATED | 4 | 8 | 3 |
CPS1 WILD-TYPE | 30 | 39 | 28 |
P value = 0.497 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 29 | 22 | 34 | 27 |
CPS1 MUTATED | 4 | 2 | 7 | 2 |
CPS1 WILD-TYPE | 25 | 20 | 27 | 25 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 61 | 51 | 27 |
CPS1 MUTATED | 5 | 9 | 7 | 4 |
CPS1 WILD-TYPE | 34 | 52 | 44 | 23 |
P value = 0.783 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 62 | 35 |
CPS1 MUTATED | 10 | 10 | 5 |
CPS1 WILD-TYPE | 71 | 52 | 30 |
P value = 0.0723 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 100 | 16 | 23 | 23 |
CPS1 MUTATED | 7 | 3 | 4 | 5 |
CPS1 WILD-TYPE | 93 | 13 | 19 | 18 |
P value = 0.345 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 74 | 57 |
CPS1 MUTATED | 6 | 7 | 6 |
CPS1 WILD-TYPE | 25 | 67 | 51 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 15 | 18 | 19 |
CPS1 MUTATED | 2 | 2 | 2 |
CPS1 WILD-TYPE | 13 | 16 | 17 |
P value = 0.428 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 5 | 3 | 3 | 13 | 10 | 7 | 5 | 2 | 4 |
CPS1 MUTATED | 1 | 0 | 1 | 1 | 0 | 2 | 1 | 0 | 0 |
CPS1 WILD-TYPE | 4 | 3 | 2 | 12 | 10 | 5 | 4 | 2 | 4 |
P value = 0.146 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 48 | 17 | 19 |
EP300 MUTATED | 5 | 2 | 0 | 0 |
EP300 WILD-TYPE | 32 | 46 | 17 | 19 |
P value = 0.119 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
EP300 MUTATED | 5 | 2 | 0 |
EP300 WILD-TYPE | 36 | 50 | 28 |
P value = 0.383 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 69 | 47 |
EP300 MUTATED | 2 | 2 | 4 |
EP300 WILD-TYPE | 60 | 67 | 43 |
P value = 0.358 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 47 | 31 |
EP300 MUTATED | 0 | 1 | 2 |
EP300 WILD-TYPE | 34 | 46 | 29 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 29 | 22 | 34 | 27 |
EP300 MUTATED | 1 | 0 | 1 | 1 |
EP300 WILD-TYPE | 28 | 22 | 33 | 26 |
P value = 0.0925 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 61 | 51 | 27 |
EP300 MUTATED | 3 | 0 | 3 | 2 |
EP300 WILD-TYPE | 36 | 61 | 48 | 25 |
P value = 0.416 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 62 | 35 |
EP300 MUTATED | 5 | 1 | 2 |
EP300 WILD-TYPE | 76 | 61 | 33 |
P value = 0.44 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 100 | 16 | 23 | 23 |
EP300 MUTATED | 7 | 0 | 0 | 0 |
EP300 WILD-TYPE | 93 | 16 | 23 | 23 |
P value = 0.311 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 74 | 57 |
EP300 MUTATED | 0 | 3 | 4 |
EP300 WILD-TYPE | 31 | 71 | 53 |
P value = 0.311 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 48 | 17 | 19 |
ARID1A MUTATED | 1 | 4 | 1 | 3 |
ARID1A WILD-TYPE | 36 | 44 | 16 | 16 |
P value = 0.55 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
ARID1A MUTATED | 2 | 4 | 3 |
ARID1A WILD-TYPE | 39 | 48 | 25 |
P value = 0.807 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 69 | 47 |
ARID1A MUTATED | 5 | 5 | 2 |
ARID1A WILD-TYPE | 57 | 64 | 45 |
P value = 0.353 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 27 | 29 | 18 |
ARID1A MUTATED | 3 | 1 | 0 |
ARID1A WILD-TYPE | 24 | 28 | 18 |
P value = 0.496 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 47 | 31 |
ARID1A MUTATED | 1 | 2 | 3 |
ARID1A WILD-TYPE | 33 | 45 | 28 |
P value = 0.599 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 29 | 22 | 34 | 27 |
ARID1A MUTATED | 1 | 1 | 1 | 3 |
ARID1A WILD-TYPE | 28 | 21 | 33 | 24 |
P value = 0.135 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 61 | 51 | 27 |
ARID1A MUTATED | 0 | 4 | 6 | 2 |
ARID1A WILD-TYPE | 39 | 57 | 45 | 25 |
P value = 0.635 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 62 | 35 |
ARID1A MUTATED | 4 | 5 | 3 |
ARID1A WILD-TYPE | 77 | 57 | 32 |
P value = 0.175 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 100 | 16 | 23 | 23 |
ARID1A MUTATED | 4 | 2 | 3 | 1 |
ARID1A WILD-TYPE | 96 | 14 | 20 | 22 |
P value = 0.692 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 74 | 57 |
ARID1A MUTATED | 3 | 4 | 3 |
ARID1A WILD-TYPE | 28 | 70 | 54 |
P value = 0.493 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 48 | 17 | 19 |
FBXW7 MUTATED | 1 | 4 | 2 | 2 |
FBXW7 WILD-TYPE | 36 | 44 | 15 | 17 |
P value = 0.829 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 41 | 52 | 28 |
FBXW7 MUTATED | 2 | 5 | 2 |
FBXW7 WILD-TYPE | 39 | 47 | 26 |
P value = 0.551 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 69 | 47 |
FBXW7 MUTATED | 4 | 5 | 1 |
FBXW7 WILD-TYPE | 58 | 64 | 46 |
P value = 0.619 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 34 | 47 | 31 |
FBXW7 MUTATED | 0 | 2 | 1 |
FBXW7 WILD-TYPE | 34 | 45 | 30 |
P value = 0.789 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 29 | 22 | 34 | 27 |
FBXW7 MUTATED | 0 | 1 | 1 | 1 |
FBXW7 WILD-TYPE | 29 | 21 | 33 | 26 |
P value = 0.835 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 39 | 61 | 51 | 27 |
FBXW7 MUTATED | 2 | 5 | 2 | 1 |
FBXW7 WILD-TYPE | 37 | 56 | 49 | 26 |
P value = 0.636 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 81 | 62 | 35 |
FBXW7 MUTATED | 4 | 5 | 1 |
FBXW7 WILD-TYPE | 77 | 57 | 34 |
P value = 0.935 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 100 | 16 | 23 | 23 |
FBXW7 MUTATED | 6 | 0 | 1 | 1 |
FBXW7 WILD-TYPE | 94 | 16 | 22 | 22 |
P value = 0.364 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 74 | 57 |
FBXW7 MUTATED | 2 | 5 | 1 |
FBXW7 WILD-TYPE | 29 | 69 | 56 |
-
Mutation data file = transformed.cor.cli.txt
-
Molecular subtypes file = LUSC-TP.transferedmergedcluster.txt
-
Number of patients = 178
-
Number of significantly mutated genes = 17
-
Number of Molecular subtypes = 12
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.