Correlation between gene mutation status and molecular subtypes
Uterine Corpus Endometrioid Carcinoma (Primary solid tumor)
15 July 2014  |  analyses__2014_07_15
Maintainer Information
Citation Information
doi:10.7908/C1NG4PFD
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2014): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C1NG4PFD
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 197 genes and 12 molecular subtypes across 248 patients, 34 significant findings detected with P value < 0.05 and Q value < 0.25.

  • PTEN mutation correlated to 'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PIK3R1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TP53 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CTCF mutation correlated to 'CN_CNMF'.

  • ARID1A mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CTNNB1 mutation correlated to 'MRNA_CNMF',  'MRNA_CHIERARCHICAL',  'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 197 genes and 12 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 34 significant findings detected.

Clinical
Features 		MRNA
CNMF 		MRNA
CHIERARCHICAL 		CN
CNMF 		METHLYATION
CNMF 		RPPA
CNMF 		RPPA
CHIERARCHICAL 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
TP53 69 (28%) 179 4e-05
(0.0844) 		1e-05
(0.0214) 		1e-05
(0.0214) 		1e-05
(0.0214) 		5e-05
(0.105) 		0.199
(1.00) 		1e-05
(0.0214) 		1e-05
(0.0214) 		1e-05
(0.0214) 		1e-05
(0.0214) 		1e-05
(0.0214) 		1e-05
(0.0214)
PTEN 161 (65%) 87 0.00395
(1.00) 		3e-05
(0.0634) 		1e-05
(0.0214) 		1e-05
(0.0214) 		0.0196
(1.00) 		0.0127
(1.00) 		1e-05
(0.0214) 		1e-05
(0.0214) 		1e-05
(0.0214) 		1e-05
(0.0214) 		1e-05
(0.0214) 		1e-05
(0.0214)
CTNNB1 74 (30%) 174 1e-05
(0.0214) 		2e-05
(0.0423) 		1e-05
(0.0214) 		0.00322
(1.00) 		1e-05
(0.0214) 		0.00533
(1.00) 		1e-05
(0.0214) 		1e-05
(0.0214) 		1e-05
(0.0214) 		1e-05
(0.0214) 		0.123
(1.00) 		0.41
(1.00)
PIK3R1 83 (33%) 165 0.0675
(1.00) 		0.0609
(1.00) 		0.0002
(0.421) 		3e-05
(0.0634) 		0.668
(1.00) 		0.478
(1.00) 		0.00011
(0.232) 		2e-05
(0.0423) 		0.0102
(1.00) 		0.0251
(1.00) 		0.049
(1.00) 		0.145
(1.00)
ARID1A 83 (33%) 165 0.267
(1.00) 		0.0722
(1.00) 		1e-05
(0.0214) 		0.103
(1.00) 		0.0176
(1.00) 		0.335
(1.00) 		0.0216
(1.00) 		3e-05
(0.0634) 		0.0347
(1.00) 		0.00202
(1.00) 		0.0319
(1.00) 		0.00426
(1.00)
CTCF 44 (18%) 204 0.15
(1.00) 		0.203
(1.00) 		3e-05
(0.0634) 		0.0667
(1.00) 		0.0621
(1.00) 		0.612
(1.00) 		0.00086
(1.00) 		0.00153
(1.00) 		0.0065
(1.00) 		0.0578
(1.00) 		0.01
(1.00) 		0.105
(1.00)
FBXW7 39 (16%) 209 0.225
(1.00) 		0.31
(1.00) 		0.615
(1.00) 		0.0357
(1.00) 		0.11
(1.00) 		0.325
(1.00) 		0.0657
(1.00) 		0.021
(1.00) 		0.761
(1.00) 		0.058
(1.00) 		0.298
(1.00) 		0.0647
(1.00)
KRAS 53 (21%) 195 0.205
(1.00) 		0.0123
(1.00) 		0.00136
(1.00) 		0.0541
(1.00) 		0.279
(1.00) 		0.106
(1.00) 		0.141
(1.00) 		0.0142
(1.00) 		0.0639
(1.00) 		0.0122
(1.00) 		0.0538
(1.00) 		0.0387
(1.00)
ARHGAP35 36 (15%) 212 0.226
(1.00) 		0.887
(1.00) 		0.378
(1.00) 		1
(1.00) 		0.0496
(1.00) 		0.127
(1.00) 		0.24
(1.00) 		0.779
(1.00) 		0.596
(1.00) 		0.241
(1.00) 		0.345
(1.00) 		0.214
(1.00)
PIK3CA 132 (53%) 116 0.86
(1.00) 		0.38
(1.00) 		0.419
(1.00) 		0.746
(1.00) 		0.379
(1.00) 		0.658
(1.00) 		0.737
(1.00) 		0.223
(1.00) 		0.335
(1.00) 		0.447
(1.00) 		0.311
(1.00) 		0.406
(1.00)
FGFR2 31 (12%) 217 0.385
(1.00) 		0.366
(1.00) 		0.241
(1.00) 		1
(1.00) 		0.976
(1.00) 		0.519
(1.00) 		1
(1.00) 		0.309
(1.00) 		0.457
(1.00) 		0.0303
(1.00) 		0.612
(1.00) 		0.943
(1.00)
ZFHX3 44 (18%) 204 0.373
(1.00) 		0.181
(1.00) 		0.0392
(1.00) 		0.0146
(1.00) 		0.325
(1.00) 		0.962
(1.00) 		0.936
(1.00) 		0.171
(1.00) 		0.231
(1.00) 		0.0686
(1.00) 		0.576
(1.00) 		0.654
(1.00)
TCP11L2 14 (6%) 234 0.0438
(1.00) 		0.0191
(1.00) 		0.0174
(1.00) 		0.106
(1.00) 		0.184
(1.00) 		0.342
(1.00) 		0.31
(1.00) 		0.0317
(1.00) 		0.487
(1.00) 		0.0111
(1.00) 		0.56
(1.00) 		0.543
(1.00)
SPOP 21 (8%) 227 0.345
(1.00) 		0.678
(1.00) 		0.733
(1.00) 		0.422
(1.00) 		0.829
(1.00) 		0.883
(1.00) 		0.232
(1.00) 		0.734
(1.00) 		0.884
(1.00) 		0.639
(1.00) 		0.55
(1.00) 		0.295
(1.00)
RBMX 13 (5%) 235 0.191
(1.00) 		0.092
(1.00) 		0.156
(1.00) 		0.385
(1.00) 		0.017
(1.00) 		0.67
(1.00) 		0.428
(1.00) 		0.823
(1.00) 		1
(1.00) 		0.0259
(1.00) 		0.812
(1.00) 		0.833
(1.00)
SOX17 7 (3%) 241 0.00467
(1.00) 		0.14
(1.00) 		0.425
(1.00) 		0.163
(1.00) 		0.183
(1.00) 		0.433
(1.00) 		0.714
(1.00) 		0.481
(1.00)
NFE2L2 15 (6%) 233 0.0907
(1.00) 		0.323
(1.00) 		0.0153
(1.00) 		0.492
(1.00) 		0.136
(1.00) 		0.195
(1.00) 		0.0149
(1.00) 		0.0195
(1.00) 		0.217
(1.00) 		0.113
(1.00) 		0.307
(1.00) 		0.504
(1.00)
CCND1 14 (6%) 234 0.632
(1.00) 		0.809
(1.00) 		0.0795
(1.00) 		0.262
(1.00) 		0.628
(1.00) 		0.965
(1.00) 		0.481
(1.00) 		0.0305
(1.00) 		0.06
(1.00) 		0.424
(1.00) 		0.441
(1.00) 		0.277
(1.00)
GNPTAB 20 (8%) 228 0.455
(1.00) 		0.0782
(1.00) 		0.00728
(1.00) 		0.116
(1.00) 		0.397
(1.00) 		0.913
(1.00) 		0.166
(1.00) 		0.0547
(1.00) 		0.497
(1.00) 		0.205
(1.00) 		1
(1.00) 		0.131
(1.00)
ARID5B 29 (12%) 219 0.961
(1.00) 		0.138
(1.00) 		0.00613
(1.00) 		0.19
(1.00) 		0.234
(1.00) 		0.173
(1.00) 		0.16
(1.00) 		0.0487
(1.00) 		0.257
(1.00) 		0.266
(1.00) 		0.303
(1.00) 		0.108
(1.00)
DNER 18 (7%) 230 0.189
(1.00) 		0.092
(1.00) 		0.00165
(1.00) 		0.66
(1.00) 		0.0114
(1.00) 		0.286
(1.00) 		0.91
(1.00) 		0.0625
(1.00) 		0.663
(1.00) 		0.422
(1.00) 		0.683
(1.00) 		0.894
(1.00)
EP300 21 (8%) 227 1
(1.00) 		0.914
(1.00) 		0.0339
(1.00) 		0.229
(1.00) 		0.142
(1.00) 		0.56
(1.00) 		0.436
(1.00) 		0.226
(1.00) 		0.318
(1.00) 		0.507
(1.00) 		0.758
(1.00) 		0.191
(1.00)
MAX 11 (4%) 237 0.0242
(1.00) 		0.492
(1.00) 		0.666
(1.00) 		0.923
(1.00) 		0.513
(1.00) 		0.194
(1.00) 		1
(1.00) 		0.713
(1.00) 		0.849
(1.00) 		0.541
(1.00)
SGK1 15 (6%) 233 0.383
(1.00) 		0.281
(1.00) 		0.205
(1.00) 		0.732
(1.00) 		0.173
(1.00) 		1
(1.00) 		0.312
(1.00) 		0.663
(1.00) 		0.289
(1.00) 		0.379
(1.00) 		0.811
(1.00) 		1
(1.00)
NRAS 9 (4%) 239 0.316
(1.00) 		0.257
(1.00) 		0.202
(1.00) 		0.704
(1.00) 		0.906
(1.00) 		0.581
(1.00) 		0.907
(1.00)
KLHL8 12 (5%) 236 0.381
(1.00) 		0.283
(1.00) 		0.0944
(1.00) 		0.508
(1.00) 		0.747
(1.00) 		0.679
(1.00) 		0.235
(1.00) 		0.111
(1.00) 		0.428
(1.00) 		0.395
(1.00) 		0.508
(1.00) 		1
(1.00)
MORC4 20 (8%) 228 0.583
(1.00) 		0.888
(1.00) 		0.22
(1.00) 		0.444
(1.00) 		0.162
(1.00) 		0.386
(1.00) 		0.143
(1.00) 		0.0194
(1.00) 		0.0186
(1.00) 		0.653
(1.00) 		0.348
(1.00) 		0.143
(1.00)
ZNF781 10 (4%) 238 0.245
(1.00) 		0.767
(1.00) 		0.818
(1.00) 		1
(1.00) 		0.57
(1.00) 		0.551
(1.00) 		0.915
(1.00) 		0.649
(1.00) 		0.864
(1.00) 		0.568
(1.00)
MKI67 29 (12%) 219 0.0242
(1.00) 		0.0152
(1.00) 		0.00019
(0.401) 		0.325
(1.00) 		0.348
(1.00) 		0.575
(1.00) 		0.0742
(1.00) 		0.0144
(1.00) 		0.184
(1.00) 		0.108
(1.00) 		1
(1.00) 		0.29
(1.00)
ING1 13 (5%) 235 0.0222
(1.00) 		0.658
(1.00) 		0.357
(1.00) 		0.863
(1.00) 		0.94
(1.00) 		0.385
(1.00) 		0.753
(1.00) 		0.179
(1.00) 		0.465
(1.00) 		0.113
(1.00)
INTS7 8 (3%) 240 0.382
(1.00) 		0.284
(1.00) 		0.387
(1.00) 		0.125
(1.00) 		0.835
(1.00) 		0.0935
(1.00) 		0.00433
(1.00) 		0.0324
(1.00) 		0.315
(1.00)
CCDC6 6 (2%) 242 0.851
(1.00) 		0.517
(1.00) 		0.198
(1.00) 		0.419
(1.00) 		0.449
(1.00) 		0.28
(1.00) 		0.0956
(1.00) 		0.117
(1.00) 		0.364
(1.00) 		0.635
(1.00)
EIF2S2 9 (4%) 239 0.276
(1.00) 		0.733
(1.00) 		0.885
(1.00) 		0.614
(1.00) 		0.279
(1.00) 		0.317
(1.00) 		0.58
(1.00) 		0.438
(1.00) 		0.685
(1.00) 		0.544
(1.00)
RBBP6 22 (9%) 226 0.584
(1.00) 		0.021
(1.00) 		0.00263
(1.00) 		0.926
(1.00) 		0.808
(1.00) 		0.957
(1.00) 		0.0577
(1.00) 		0.00917
(1.00) 		0.605
(1.00) 		0.0785
(1.00) 		0.698
(1.00) 		0.0289
(1.00)
SOS1 12 (5%) 236 0.63
(1.00) 		0.809
(1.00) 		0.257
(1.00) 		0.558
(1.00) 		0.218
(1.00) 		0.257
(1.00) 		0.666
(1.00) 		0.602
(1.00) 		0.195
(1.00) 		0.411
(1.00) 		1
(1.00) 		0.546
(1.00)
NAT1 7 (3%) 241 0.382
(1.00) 		0.0796
(1.00) 		0.182
(1.00) 		0.107
(1.00) 		0.0238
(1.00) 		0.458
(1.00) 		0.287
(1.00) 		1
(1.00) 		0.572
(1.00) 		0.313
(1.00) 		0.0602
(1.00)
ADNP 14 (6%) 234 0.0828
(1.00) 		0.192
(1.00) 		0.0589
(1.00) 		0.878
(1.00) 		0.591
(1.00) 		0.678
(1.00) 		0.452
(1.00) 		0.211
(1.00) 		0.737
(1.00) 		0.93
(1.00) 		0.851
(1.00) 		0.0416
(1.00)
VPS11 12 (5%) 236 0.382
(1.00) 		0.281
(1.00) 		0.0807
(1.00) 		1
(1.00) 		0.277
(1.00) 		0.394
(1.00) 		0.407
(1.00) 		0.285
(1.00) 		0.531
(1.00) 		0.0427
(1.00) 		0.446
(1.00) 		0.0611
(1.00)
L1TD1 16 (6%) 232 0.0133
(1.00) 		0.147
(1.00) 		0.0744
(1.00) 		0.974
(1.00) 		0.424
(1.00) 		0.0935
(1.00) 		0.842
(1.00) 		0.43
(1.00) 		0.718
(1.00) 		0.214
(1.00)
MARK3 11 (4%) 237 0.134
(1.00) 		0.091
(1.00) 		0.0246
(1.00) 		0.0376
(1.00) 		0.0405
(1.00) 		0.616
(1.00) 		0.55
(1.00) 		0.0635
(1.00) 		0.192
(1.00) 		0.00427
(1.00)
CTNND1 19 (8%) 229 0.288
(1.00) 		0.398
(1.00) 		0.0355
(1.00) 		1
(1.00) 		0.0139
(1.00) 		0.717
(1.00) 		0.603
(1.00) 		0.296
(1.00) 		0.91
(1.00) 		0.09
(1.00) 		0.359
(1.00) 		0.517
(1.00)
GFAP 9 (4%) 239 0.0294
(1.00) 		0.443
(1.00) 		0.328
(1.00) 		0.663
(1.00) 		0.0697
(1.00) 		0.502
(1.00) 		0.395
(1.00) 		0.0377
(1.00) 		0.795
(1.00) 		0.121
(1.00)
PPP2R1A 27 (11%) 221 0.0755
(1.00) 		0.0567
(1.00) 		0.043
(1.00) 		0.0142
(1.00) 		0.192
(1.00) 		0.837
(1.00) 		0.00223
(1.00) 		0.00222
(1.00) 		0.0144
(1.00) 		0.00081
(1.00) 		0.0947
(1.00) 		0.121
(1.00)
C9ORF102 16 (6%) 232 0.537
(1.00) 		0.25
(1.00) 		0.0127
(1.00) 		0.632
(1.00) 		0.801
(1.00) 		0.952
(1.00) 		0.172
(1.00) 		0.0394
(1.00) 		0.0904
(1.00) 		0.212
(1.00) 		1
(1.00) 		0.541
(1.00)
EIF4A2 7 (3%) 241 0.182
(1.00) 		0.779
(1.00) 		0.713
(1.00) 		0.532
(1.00) 		0.0637
(1.00) 		0.0509
(1.00) 		0.0321
(1.00) 		0.245
(1.00) 		0.446
(1.00) 		0.12
(1.00)
ZNF471 15 (6%) 233 0.684
(1.00) 		0.0914
(1.00) 		0.0454
(1.00) 		0.559
(1.00) 		0.566
(1.00) 		0.843
(1.00) 		0.48
(1.00) 		0.0171
(1.00) 		0.181
(1.00) 		0.0855
(1.00) 		0.864
(1.00) 		0.568
(1.00)
CDK17 14 (6%) 234 0.0462
(1.00) 		0.00259
(1.00) 		0.0646
(1.00) 		0.0604
(1.00) 		0.807
(1.00) 		0.86
(1.00) 		0.88
(1.00) 		1
(1.00) 		0.7
(1.00) 		0.0354
(1.00) 		1
(1.00) 		0.571
(1.00)
SIN3A 21 (8%) 227 0.02
(1.00) 		0.331
(1.00) 		0.00415
(1.00) 		0.494
(1.00) 		0.0213
(1.00) 		0.00143
(1.00) 		0.0313
(1.00) 		0.00517
(1.00) 		0.516
(1.00) 		0.273
(1.00)
ZNF485 9 (4%) 239 1
(1.00) 		0.0792
(1.00) 		0.275
(1.00) 		1
(1.00) 		0.362
(1.00) 		0.695
(1.00) 		0.705
(1.00) 		1
(1.00) 		0.395
(1.00) 		0.701
(1.00) 		0.445
(1.00) 		0.335
(1.00)
RSBN1L 12 (5%) 236 0.133
(1.00) 		0.0925
(1.00) 		0.0826
(1.00) 		0.556
(1.00) 		0.00692
(1.00) 		0.744
(1.00) 		0.323
(1.00) 		0.112
(1.00) 		0.39
(1.00) 		0.631
(1.00)
CUX1 23 (9%) 225 0.823
(1.00) 		0.581
(1.00) 		0.00661
(1.00) 		0.264
(1.00) 		0.952
(1.00) 		0.311
(1.00) 		0.334
(1.00) 		0.227
(1.00) 		0.845
(1.00) 		0.566
(1.00) 		0.923
(1.00) 		0.715
(1.00)
BCOR 30 (12%) 218 0.688
(1.00) 		0.204
(1.00) 		0.00041
(0.862) 		0.0161
(1.00) 		0.524
(1.00) 		0.659
(1.00) 		0.0317
(1.00) 		0.00504
(1.00) 		0.658
(1.00) 		0.449
(1.00) 		0.93
(1.00) 		0.0272
(1.00)
WDR45 11 (4%) 237 0.308
(1.00) 		0.58
(1.00) 		0.0376
(1.00) 		0.768
(1.00) 		0.862
(1.00) 		0.577
(1.00) 		0.192
(1.00) 		0.116
(1.00) 		0.257
(1.00) 		1
(1.00)
CAB39L 8 (3%) 240 0.18
(1.00) 		0.0954
(1.00) 		0.752
(1.00) 		0.737
(1.00) 		0.0472
(1.00) 		0.198
(1.00) 		0.197
(1.00)
TAB3 18 (7%) 230 0.133
(1.00) 		0.0924
(1.00) 		0.0204
(1.00) 		0.28
(1.00) 		0.692
(1.00) 		0.439
(1.00) 		0.0598
(1.00) 		0.0336
(1.00) 		0.456
(1.00) 		0.213
(1.00) 		0.681
(1.00) 		0.531
(1.00)
OAZ3 8 (3%) 240 0.0646
(1.00) 		0.557
(1.00) 		0.429
(1.00) 		0.354
(1.00) 		0.0667
(1.00) 		0.0228
(1.00) 		0.198
(1.00) 		0.12
(1.00)
AHCYL1 6 (2%) 242 0.18
(1.00) 		1
(1.00) 		0.514
(1.00) 		0.84
(1.00) 		1
(1.00) 		0.493
(1.00) 		0.677
(1.00) 		0.263
(1.00)
ATM 29 (12%) 219 0.0113
(1.00) 		0.00031
(0.652) 		0.00025
(0.526) 		0.691
(1.00) 		0.186
(1.00) 		0.328
(1.00) 		0.721
(1.00) 		0.0816
(1.00) 		0.42
(1.00) 		0.0183
(1.00) 		1
(1.00) 		0.337
(1.00)
MSH4 15 (6%) 233 0.684
(1.00) 		0.0916
(1.00) 		0.0161
(1.00) 		0.877
(1.00) 		0.415
(1.00) 		0.727
(1.00) 		0.896
(1.00) 		0.233
(1.00) 		0.399
(1.00) 		0.337
(1.00) 		1
(1.00) 		0.537
(1.00)
FAM65B 16 (6%) 232 0.00239
(1.00) 		0.324
(1.00) 		0.207
(1.00) 		0.653
(1.00) 		0.585
(1.00) 		0.338
(1.00) 		0.945
(1.00) 		0.0256
(1.00) 		0.631
(1.00) 		0.215
(1.00)
FN1 24 (10%) 224 0.184
(1.00) 		0.0598
(1.00) 		0.00523
(1.00) 		0.411
(1.00) 		0.302
(1.00) 		0.898
(1.00) 		0.333
(1.00) 		0.0737
(1.00) 		0.331
(1.00) 		0.0122
(1.00) 		0.713
(1.00) 		0.925
(1.00)
JAKMIP2 12 (5%) 236 0.382
(1.00) 		0.281
(1.00) 		0.0317
(1.00) 		0.558
(1.00) 		0.0342
(1.00) 		0.765
(1.00) 		0.0736
(1.00) 		0.0637
(1.00) 		0.0866
(1.00) 		0.241
(1.00)
WBP4 8 (3%) 240 0.181
(1.00) 		0.107
(1.00) 		0.262
(1.00) 		0.914
(1.00) 		0.401
(1.00) 		0.166
(1.00) 		0.068
(1.00) 		0.0868
(1.00) 		0.26
(1.00) 		0.121
(1.00)
RASA1 22 (9%) 226 0.383
(1.00) 		0.364
(1.00) 		0.104
(1.00) 		0.43
(1.00) 		0.419
(1.00) 		0.812
(1.00) 		0.921
(1.00) 		0.737
(1.00) 		0.604
(1.00) 		0.545
(1.00) 		0.896
(1.00) 		0.519
(1.00)
ALPK2 19 (8%) 229 0.0313
(1.00) 		0.0147
(1.00) 		0.0159
(1.00) 		0.426
(1.00) 		0.787
(1.00) 		0.49
(1.00) 		0.256
(1.00) 		0.46
(1.00) 		0.361
(1.00) 		0.625
(1.00) 		0.61
(1.00) 		0.403
(1.00)
POLE 27 (11%) 221 0.735
(1.00) 		0.0607
(1.00) 		0.00644
(1.00) 		0.255
(1.00) 		0.329
(1.00) 		0.904
(1.00) 		0.935
(1.00) 		0.193
(1.00) 		0.812
(1.00) 		0.111
(1.00) 		1
(1.00) 		0.516
(1.00)
KIF20B 21 (8%) 227 0.288
(1.00) 		0.0457
(1.00) 		0.00378
(1.00) 		0.801
(1.00) 		0.498
(1.00) 		0.966
(1.00) 		0.606
(1.00) 		0.0324
(1.00) 		0.491
(1.00) 		0.127
(1.00) 		0.905
(1.00) 		0.112
(1.00)
C14ORF166B 10 (4%) 238 0.0285
(1.00) 		0.0126
(1.00) 		0.0268
(1.00) 		0.578
(1.00) 		1
(1.00) 		0.167
(1.00) 		0.635
(1.00) 		0.5
(1.00) 		0.142
(1.00) 		0.833
(1.00)
SLC26A8 12 (5%) 236 0.0261
(1.00) 		0.637
(1.00) 		0.11
(1.00) 		0.858
(1.00) 		0.323
(1.00) 		0.113
(1.00) 		0.253
(1.00) 		0.198
(1.00) 		0.851
(1.00) 		0.244
(1.00)
ZNF334 17 (7%) 231 1
(1.00) 		0.0782
(1.00) 		0.0559
(1.00) 		0.376
(1.00) 		0.335
(1.00) 		0.437
(1.00) 		0.399
(1.00) 		0.897
(1.00) 		0.949
(1.00) 		0.637
(1.00) 		0.818
(1.00) 		0.452
(1.00)
RRAS2 4 (2%) 244 0.0129
(1.00) 		0.235
(1.00) 		0.257
(1.00) 		0.171
(1.00) 		0.82
(1.00) 		0.465
(1.00) 		0.909
(1.00)
PPM1N 7 (3%) 241 0.381
(1.00) 		0.284
(1.00) 		0.468
(1.00) 		1
(1.00) 		0.57
(1.00) 		0.582
(1.00) 		0.0632
(1.00) 		0.384
(1.00) 		0.342
(1.00) 		0.243
(1.00) 		0.795
(1.00) 		0.343
(1.00)
FCN1 8 (3%) 240 0.181
(1.00) 		0.445
(1.00) 		0.447
(1.00) 		0.635
(1.00) 		0.406
(1.00) 		0.66
(1.00) 		1
(1.00) 		0.777
(1.00) 		1
(1.00) 		0.0381
(1.00)
TIAL1 10 (4%) 238 0.381
(1.00) 		0.0789
(1.00) 		0.136
(1.00) 		0.108
(1.00) 		0.445
(1.00) 		0.0508
(1.00) 		0.0776
(1.00) 		0.342
(1.00) 		0.722
(1.00) 		0.389
(1.00) 		0.303
(1.00) 		0.0516
(1.00)
PSMC4 11 (4%) 237 0.135
(1.00) 		0.445
(1.00) 		0.109
(1.00) 		0.695
(1.00) 		0.264
(1.00) 		0.35
(1.00) 		0.787
(1.00) 		0.0936
(1.00) 		0.56
(1.00) 		0.0545
(1.00)
MFAP5 9 (4%) 239 0.154
(1.00) 		0.516
(1.00) 		0.0042
(1.00) 		0.96
(1.00) 		0.705
(1.00) 		0.387
(1.00) 		0.2
(1.00) 		0.22
(1.00) 		0.142
(1.00) 		0.119
(1.00)
RAB3GAP1 16 (6%) 232 1
(1.00) 		0.0768
(1.00) 		0.0271
(1.00) 		0.342
(1.00) 		0.186
(1.00) 		0.819
(1.00) 		0.801
(1.00) 		0.789
(1.00) 		0.671
(1.00) 		0.294
(1.00) 		1
(1.00) 		0.0791
(1.00)
MSH6 17 (7%) 231 0.382
(1.00) 		0.28
(1.00) 		0.00092
(1.00) 		0.632
(1.00) 		0.172
(1.00) 		0.978
(1.00) 		0.36
(1.00) 		0.243
(1.00) 		0.495
(1.00) 		0.0918
(1.00) 		1
(1.00) 		0.541
(1.00)
BMP2K 13 (5%) 235 0.133
(1.00) 		0.0921
(1.00) 		0.0647
(1.00) 		0.261
(1.00) 		0.927
(1.00) 		1
(1.00) 		0.436
(1.00) 		0.418
(1.00) 		0.175
(1.00) 		0.679
(1.00) 		0.174
(1.00) 		0.694
(1.00)
ZNF606 16 (6%) 232 0.132
(1.00) 		0.092
(1.00) 		0.0129
(1.00) 		0.188
(1.00) 		0.747
(1.00) 		0.931
(1.00) 		0.808
(1.00) 		0.673
(1.00) 		0.945
(1.00) 		0.623
(1.00) 		0.479
(1.00) 		0.571
(1.00)
ZNF263 7 (3%) 241 0.467
(1.00) 		0.388
(1.00) 		0.769
(1.00) 		0.898
(1.00) 		0.511
(1.00) 		0.331
(1.00) 		0.204
(1.00) 		0.102
(1.00) 		0.44
(1.00) 		0.17
(1.00)
CHEK2 13 (5%) 235 0.687
(1.00) 		0.204
(1.00) 		0.0704
(1.00) 		0.28
(1.00) 		0.162
(1.00) 		0.842
(1.00) 		0.199
(1.00) 		0.0615
(1.00) 		0.174
(1.00) 		0.519
(1.00) 		0.442
(1.00) 		1
(1.00)
MGA 26 (10%) 222 0.325
(1.00) 		0.364
(1.00) 		0.196
(1.00) 		0.872
(1.00) 		0.107
(1.00) 		0.337
(1.00) 		0.0378
(1.00) 		0.0395
(1.00) 		0.105
(1.00) 		0.0515
(1.00) 		0.346
(1.00) 		0.0388
(1.00)
RHBDD3 4 (2%) 244 0.759
(1.00) 		0.112
(1.00) 		0.9
(1.00) 		0.629
(1.00) 		0.274
(1.00) 		0.569
(1.00) 		0.688
(1.00) 		0.179
(1.00) 		0.793
(1.00) 		0.12
(1.00)
TAP1 8 (3%) 240 0.0292
(1.00) 		0.78
(1.00) 		0.831
(1.00) 		0.802
(1.00) 		0.124
(1.00) 		0.331
(1.00) 		0.342
(1.00) 		0.0865
(1.00)
RB1 20 (8%) 228 0.639
(1.00) 		0.00572
(1.00) 		0.18
(1.00) 		0.252
(1.00) 		0.159
(1.00) 		0.495
(1.00) 		0.473
(1.00) 		0.129
(1.00) 		0.36
(1.00) 		0.0912
(1.00) 		1
(1.00) 		0.0812
(1.00)
SLC1A3 12 (5%) 236 0.127
(1.00) 		0.668
(1.00) 		0.0298
(1.00) 		0.636
(1.00) 		0.166
(1.00) 		0.929
(1.00) 		0.316
(1.00) 		0.143
(1.00) 		0.559
(1.00) 		0.19
(1.00)
ATAD5 17 (7%) 231 0.0508
(1.00) 		0.322
(1.00) 		0.489
(1.00) 		0.653
(1.00) 		0.778
(1.00) 		0.103
(1.00) 		0.552
(1.00) 		0.255
(1.00) 		0.682
(1.00) 		0.533
(1.00)
ALG8 10 (4%) 238 1
(1.00) 		0.206
(1.00) 		0.325
(1.00) 		0.0369
(1.00) 		0.613
(1.00) 		0.47
(1.00) 		0.616
(1.00) 		0.603
(1.00) 		0.85
(1.00) 		0.683
(1.00) 		1
(1.00) 		1
(1.00)
TIGD4 13 (5%) 235 0.905
(1.00) 		0.586
(1.00) 		0.364
(1.00) 		0.877
(1.00) 		0.0138
(1.00) 		0.543
(1.00) 		0.353
(1.00) 		0.0613
(1.00) 		0.139
(1.00) 		0.519
(1.00) 		0.851
(1.00) 		0.24
(1.00)
PARG 9 (4%) 239 0.0167
(1.00) 		0.877
(1.00) 		0.256
(1.00) 		0.73
(1.00) 		0.179
(1.00) 		0.333
(1.00) 		0.158
(1.00) 		0.174
(1.00) 		0.562
(1.00) 		0.0566
(1.00)
FAT1 40 (16%) 208 0.00606
(1.00) 		0.00135
(1.00) 		0.028
(1.00) 		0.00645
(1.00) 		0.269
(1.00) 		0.164
(1.00) 		0.191
(1.00) 		0.041
(1.00) 		0.377
(1.00) 		0.0349
(1.00) 		0.945
(1.00) 		0.221
(1.00)
DYM 10 (4%) 238 0.245
(1.00) 		0.28
(1.00) 		0.469
(1.00) 		0.419
(1.00) 		0.721
(1.00) 		1
(1.00) 		1
(1.00) 		0.112
(1.00) 		0.605
(1.00) 		0.109
(1.00)
PSMD3 11 (4%) 237 0.688
(1.00) 		0.205
(1.00) 		0.136
(1.00) 		0.518
(1.00) 		0.32
(1.00) 		0.738
(1.00) 		0.506
(1.00) 		0.623
(1.00) 		0.394
(1.00) 		0.759
(1.00) 		0.559
(1.00) 		0.546
(1.00)
PPM1D 11 (4%) 237 0.382
(1.00) 		0.282
(1.00) 		0.116
(1.00) 		0.151
(1.00) 		0.246
(1.00) 		0.745
(1.00) 		0.368
(1.00) 		0.0291
(1.00) 		0.51
(1.00) 		0.193
(1.00) 		0.559
(1.00) 		0.547
(1.00)
ZMYM2 17 (7%) 231 0.38
(1.00) 		0.0776
(1.00) 		0.0558
(1.00) 		1
(1.00) 		0.461
(1.00) 		0.843
(1.00) 		0.274
(1.00) 		0.244
(1.00) 		0.852
(1.00) 		0.136
(1.00) 		0.307
(1.00) 		0.108
(1.00)
INPP4B 12 (5%) 236 0.457
(1.00) 		0.0765
(1.00) 		0.115
(1.00) 		0.0281
(1.00) 		0.207
(1.00) 		1
(1.00) 		0.0711
(1.00) 		0.638
(1.00) 		0.629
(1.00)
USP28 10 (4%) 238 0.138
(1.00) 		0.188
(1.00) 		0.892
(1.00) 		0.683
(1.00) 		0.356
(1.00) 		0.602
(1.00) 		1
(1.00) 		0.0596
(1.00) 		0.812
(1.00) 		0.172
(1.00)
EMR1 13 (5%) 235 0.685
(1.00) 		0.0918
(1.00) 		0.119
(1.00) 		0.282
(1.00) 		0.305
(1.00) 		0.891
(1.00) 		0.639
(1.00) 		0.309
(1.00) 		0.616
(1.00) 		0.341
(1.00) 		1
(1.00) 		0.042
(1.00)
ZNF385B 7 (3%) 241 0.181
(1.00) 		0.734
(1.00) 		0.134
(1.00) 		0.848
(1.00) 		0.312
(1.00) 		0.288
(1.00) 		0.68
(1.00) 		0.945
(1.00) 		0.598
(1.00) 		1
(1.00)
RAE1 11 (4%) 237 0.458
(1.00) 		0.0776
(1.00) 		0.0719
(1.00) 		0.185
(1.00) 		0.268
(1.00) 		0.227
(1.00) 		0.508
(1.00) 		0.425
(1.00) 		0.508
(1.00) 		0.12
(1.00) 		0.851
(1.00) 		0.54
(1.00)
TRIM59 9 (4%) 239 0.0557
(1.00) 		0.86
(1.00) 		0.139
(1.00) 		0.326
(1.00) 		0.641
(1.00) 		0.203
(1.00) 		0.605
(1.00) 		0.233
(1.00) 		0.26
(1.00) 		0.123
(1.00)
ZNF721 13 (5%) 235 1
(1.00) 		0.0784
(1.00) 		0.022
(1.00) 		0.632
(1.00) 		0.0443
(1.00) 		0.765
(1.00) 		0.521
(1.00) 		0.31
(1.00) 		0.426
(1.00) 		0.795
(1.00) 		1
(1.00) 		0.733
(1.00)
MCTP1 13 (5%) 235 0.379
(1.00) 		0.227
(1.00) 		0.259
(1.00) 		0.669
(1.00) 		0.307
(1.00) 		0.858
(1.00) 		0.518
(1.00) 		0.506
(1.00) 		0.176
(1.00) 		0.796
(1.00) 		0.344
(1.00) 		0.0378
(1.00)
ZNF774 10 (4%) 238 0.626
(1.00) 		0.667
(1.00) 		0.435
(1.00) 		0.922
(1.00) 		0.568
(1.00) 		0.655
(1.00) 		0.436
(1.00) 		0.389
(1.00) 		0.657
(1.00) 		0.189
(1.00)
FAM9A 14 (6%) 234 0.465
(1.00) 		0.0679
(1.00) 		0.192
(1.00) 		0.535
(1.00) 		0.0725
(1.00) 		0.278
(1.00) 		0.784
(1.00) 		0.17
(1.00) 		0.0217
(1.00) 		0.0187
(1.00)
CFP 8 (3%) 240 0.18
(1.00) 		1
(1.00) 		0.156
(1.00) 		0.51
(1.00) 		0.403
(1.00) 		1
(1.00) 		0.738
(1.00) 		0.666
(1.00) 		0.302
(1.00) 		0.54
(1.00)
PER3 12 (5%) 236 0.0266
(1.00) 		0.133
(1.00) 		0.192
(1.00) 		0.764
(1.00) 		0.0748
(1.00) 		0.111
(1.00) 		0.684
(1.00) 		0.239
(1.00) 		0.85
(1.00) 		0.00536
(1.00)
ZRANB3 8 (3%) 240 0.688
(1.00) 		0.207
(1.00) 		0.178
(1.00) 		0.441
(1.00) 		0.557
(1.00) 		0.0934
(1.00) 		0.023
(1.00) 		0.0563
(1.00) 		0.0696
(1.00)
OMA1 10 (4%) 238 0.0298
(1.00) 		0.509
(1.00) 		0.236
(1.00) 		0.854
(1.00) 		1
(1.00) 		0.169
(1.00) 		0.369
(1.00) 		0.206
(1.00) 		0.245
(1.00) 		0.732
(1.00)
CLDN15 5 (2%) 243 0.558
(1.00) 		0.31
(1.00) 		0.654
(1.00) 		0.692
(1.00) 		0.133
(1.00) 		0.316
(1.00) 		0.328
(1.00) 		0.0604
(1.00) 		0.795
(1.00) 		0.119
(1.00)
TTC39C 7 (3%) 241 0.689
(1.00) 		0.207
(1.00) 		0.184
(1.00) 		0.0862
(1.00) 		0.559
(1.00) 		0.457
(1.00) 		0.0943
(1.00) 		0.289
(1.00) 		0.558
(1.00)
TXNRD1 8 (3%) 240 0.688
(1.00) 		0.204
(1.00) 		0.332
(1.00) 		0.384
(1.00) 		0.448
(1.00) 		0.765
(1.00) 		0.404
(1.00) 		0.427
(1.00) 		0.196
(1.00) 		0.0351
(1.00)
MECOM 12 (5%) 236 0.537
(1.00) 		0.047
(1.00) 		0.257
(1.00) 		0.559
(1.00) 		0.502
(1.00) 		0.0933
(1.00) 		0.637
(1.00) 		0.457
(1.00) 		0.288
(1.00) 		0.973
(1.00) 		0.172
(1.00) 		0.691
(1.00)
CCDC147 15 (6%) 233 0.685
(1.00) 		0.0922
(1.00) 		0.0459
(1.00) 		0.656
(1.00) 		0.153
(1.00) 		0.923
(1.00) 		0.569
(1.00) 		0.455
(1.00) 		0.698
(1.00) 		0.198
(1.00) 		1
(1.00) 		0.052
(1.00)
SACS 26 (10%) 222 0.0212
(1.00) 		0.00149
(1.00) 		0.00195
(1.00) 		0.683
(1.00) 		0.0794
(1.00) 		0.59
(1.00) 		0.339
(1.00) 		0.119
(1.00) 		0.185
(1.00) 		0.373
(1.00) 		0.237
(1.00) 		0.563
(1.00)
MUTED 7 (3%) 241 0.183
(1.00) 		0.628
(1.00) 		0.0275
(1.00) 		0.0794
(1.00) 		0.706
(1.00) 		0.254
(1.00) 		0.385
(1.00) 		1
(1.00) 		0.315
(1.00) 		0.615
(1.00)
SLC44A3 6 (2%) 242 0.18
(1.00) 		0.684
(1.00) 		0.693
(1.00) 		0.466
(1.00) 		1
(1.00) 		0.495
(1.00) 		0.677
(1.00) 		0.64
(1.00)
ZNF674 14 (6%) 234 0.0646
(1.00) 		0.878
(1.00) 		0.0675
(1.00) 		0.849
(1.00) 		0.212
(1.00) 		0.126
(1.00) 		0.142
(1.00) 		0.12
(1.00) 		1
(1.00) 		0.544
(1.00)
CCDC144A 18 (7%) 230 0.808
(1.00) 		0.0942
(1.00) 		0.0416
(1.00) 		0.426
(1.00) 		0.173
(1.00) 		0.67
(1.00) 		0.648
(1.00) 		0.178
(1.00) 		0.191
(1.00) 		0.237
(1.00) 		0.683
(1.00) 		0.531
(1.00)
OR8B8 7 (3%) 241 0.0311
(1.00) 		0.777
(1.00) 		0.35
(1.00) 		0.932
(1.00) 		0.312
(1.00) 		0.617
(1.00) 		0.388
(1.00) 		0.234
(1.00)
LNX2 14 (6%) 234 0.383
(1.00) 		0.281
(1.00) 		0.0177
(1.00) 		0.00257
(1.00) 		0.833
(1.00) 		1
(1.00) 		0.0258
(1.00) 		0.0142
(1.00) 		0.181
(1.00) 		0.213
(1.00) 		1
(1.00) 		0.544
(1.00)
TMEM62 9 (4%) 239 0.153
(1.00) 		0.78
(1.00) 		0.588
(1.00) 		0.804
(1.00) 		0.141
(1.00) 		0.109
(1.00) 		0.607
(1.00) 		0.11
(1.00) 		0.599
(1.00) 		1
(1.00)
ATF7IP 17 (7%) 231 0.199
(1.00) 		0.0234
(1.00) 		0.0271
(1.00) 		0.0934
(1.00) 		0.724
(1.00) 		0.947
(1.00) 		0.552
(1.00) 		0.599
(1.00) 		1
(1.00) 		0.173
(1.00) 		0.507
(1.00) 		0.0266
(1.00)
IL20 7 (3%) 241 0.132
(1.00) 		0.0929
(1.00) 		0.182
(1.00) 		0.247
(1.00) 		0.934
(1.00) 		0.639
(1.00) 		0.00714
(1.00) 		0.291
(1.00) 		0.0558
(1.00)
C3AR1 8 (3%) 240 0.383
(1.00) 		0.281
(1.00) 		0.383
(1.00) 		0.175
(1.00) 		0.165
(1.00) 		0.497
(1.00) 		0.247
(1.00) 		0.633
(1.00) 		0.568
(1.00)
PKD2 8 (3%) 240 1
(1.00) 		0.914
(1.00) 		0.088
(1.00) 		0.188
(1.00) 		0.868
(1.00) 		1
(1.00) 		0.301
(1.00) 		0.714
(1.00) 		0.45
(1.00)
BMP5 13 (5%) 235 0.808
(1.00) 		0.0917
(1.00) 		0.117
(1.00) 		1
(1.00) 		0.219
(1.00) 		0.304
(1.00) 		0.881
(1.00) 		0.309
(1.00) 		0.657
(1.00) 		0.518
(1.00) 		0.685
(1.00) 		0.359
(1.00)
OR52I2 8 (3%) 240 0.686
(1.00) 		0.533
(1.00) 		0.327
(1.00) 		0.0384
(1.00) 		0.718
(1.00) 		0.499
(1.00) 		0.157
(1.00) 		0.66
(1.00) 		0.799
(1.00) 		0.362
(1.00) 		1
(1.00) 		1
(1.00)
C1ORF100 9 (4%) 239 0.383
(1.00) 		0.286
(1.00) 		0.00305
(1.00) 		1
(1.00) 		0.718
(1.00) 		0.263
(1.00) 		0.279
(1.00) 		0.163
(1.00) 		0.104
(1.00) 		0.413
(1.00)
CCDC160 11 (4%) 237 0.687
(1.00) 		0.205
(1.00) 		0.114
(1.00) 		1
(1.00) 		0.815
(1.00) 		0.719
(1.00) 		0.553
(1.00) 		0.349
(1.00) 		0.919
(1.00) 		0.469
(1.00) 		0.442
(1.00) 		0.831
(1.00)
NAA15 14 (6%) 234 0.536
(1.00) 		0.247
(1.00) 		0.0645
(1.00) 		0.1
(1.00) 		0.152
(1.00) 		0.4
(1.00) 		0.115
(1.00) 		0.126
(1.00) 		0.212
(1.00) 		0.381
(1.00) 		0.158
(1.00) 		0.0392
(1.00)
RNF31 17 (7%) 231 0.385
(1.00) 		0.05
(1.00) 		0.0374
(1.00) 		0.485
(1.00) 		0.0729
(1.00) 		0.297
(1.00) 		0.0788
(1.00) 		0.0641
(1.00) 		0.0147
(1.00) 		0.067
(1.00) 		0.151
(1.00) 		0.0959
(1.00)
NFE2L3 12 (5%) 236 0.473
(1.00) 		0.0333
(1.00) 		0.39
(1.00) 		0.857
(1.00) 		0.0436
(1.00) 		0.385
(1.00) 		0.228
(1.00) 		0.236
(1.00) 		0.507
(1.00) 		0.187
(1.00)
ZKSCAN1 7 (3%) 241 0.47
(1.00) 		0.443
(1.00) 		0.152
(1.00) 		0.311
(1.00) 		0.456
(1.00) 		1
(1.00) 		0.8
(1.00) 		0.303
(1.00) 		0.85
(1.00) 		0.54
(1.00)
CDKL1 7 (3%) 241 0.182
(1.00) 		0.684
(1.00) 		0.399
(1.00) 		0.869
(1.00) 		0.8
(1.00) 		0.289
(1.00) 		0.683
(1.00) 		0.36
(1.00) 		0.441
(1.00) 		0.833
(1.00)
ERBB3 17 (7%) 231 0.0947
(1.00) 		0.488
(1.00) 		0.438
(1.00) 		0.881
(1.00) 		0.208
(1.00) 		0.244
(1.00) 		0.857
(1.00) 		0.782
(1.00) 		0.634
(1.00) 		1
(1.00)
SELP 9 (4%) 239 0.381
(1.00) 		0.281
(1.00) 		0.197
(1.00) 		0.263
(1.00) 		1
(1.00) 		0.369
(1.00) 		0.316
(1.00) 		0.251
(1.00) 		0.664
(1.00)
PPIG 16 (6%) 232 0.193
(1.00) 		0.0916
(1.00) 		0.046
(1.00) 		1
(1.00) 		0.732
(1.00) 		0.955
(1.00) 		0.173
(1.00) 		0.14
(1.00) 		0.263
(1.00) 		0.448
(1.00) 		1
(1.00) 		0.112
(1.00)
GPRASP1 21 (8%) 227 0.29
(1.00) 		0.0448
(1.00) 		0.0526
(1.00) 		0.629
(1.00) 		0.343
(1.00) 		1
(1.00) 		1
(1.00) 		0.301
(1.00) 		0.431
(1.00) 		0.934
(1.00) 		0.718
(1.00) 		1
(1.00)
REV3L 20 (8%) 228 0.381
(1.00) 		0.282
(1.00) 		0.0116
(1.00) 		0.331
(1.00) 		0.543
(1.00) 		1
(1.00) 		0.566
(1.00) 		0.0439
(1.00) 		0.6
(1.00) 		0.0548
(1.00) 		0.712
(1.00) 		0.257
(1.00)
CTNNA1 13 (5%) 235 0.26
(1.00) 		0.669
(1.00) 		0.194
(1.00) 		0.9
(1.00) 		0.378
(1.00) 		0.507
(1.00) 		0.87
(1.00) 		0.808
(1.00) 		0.66
(1.00) 		0.758
(1.00)
MRPL47 6 (2%) 242 0.685
(1.00) 		0.533
(1.00) 		1
(1.00) 		0.779
(1.00) 		0.584
(1.00) 		0.807
(1.00) 		0.609
(1.00) 		0.873
(1.00) 		1
(1.00) 		0.371
(1.00) 		1
(1.00) 		0.337
(1.00)
DEPDC1B 11 (4%) 237 0.688
(1.00) 		0.205
(1.00) 		0.201
(1.00) 		0.666
(1.00) 		0.0222
(1.00) 		0.408
(1.00) 		0.29
(1.00) 		1
(1.00) 		0.786
(1.00) 		0.667
(1.00) 		0.562
(1.00) 		0.57
(1.00)
CASP8 17 (7%) 231 0.382
(1.00) 		0.0787
(1.00) 		0.0507
(1.00) 		0.256
(1.00) 		0.154
(1.00) 		1
(1.00) 		0.633
(1.00) 		0.529
(1.00) 		0.469
(1.00) 		0.639
(1.00) 		0.363
(1.00) 		0.536
(1.00)
CACNB4 10 (4%) 238 0.00387
(1.00) 		0.556
(1.00) 		0.671
(1.00) 		1
(1.00) 		0.436
(1.00) 		0.551
(1.00) 		0.552
(1.00) 		0.234
(1.00) 		1
(1.00) 		0.169
(1.00)
BHLHB9 8 (3%) 240 0.177
(1.00) 		1
(1.00) 		0.961
(1.00) 		0.507
(1.00) 		0.123
(1.00) 		0.426
(1.00) 		0.249
(1.00) 		0.188
(1.00) 		0.444
(1.00) 		0.341
(1.00)
C22ORF25 6 (2%) 242 0.532
(1.00) 		1
(1.00) 		0.613
(1.00) 		0.0407
(1.00) 		0.0946
(1.00) 		0.0676
(1.00) 		0.41
(1.00)
GALNT7 11 (4%) 237 0.684
(1.00) 		0.0923
(1.00) 		0.314
(1.00) 		0.777
(1.00) 		0.718
(1.00) 		0.729
(1.00) 		0.368
(1.00) 		0.195
(1.00) 		0.249
(1.00) 		0.0348
(1.00) 		1
(1.00) 		0.341
(1.00)
LGMN 7 (3%) 241 0.382
(1.00) 		0.0793
(1.00) 		0.183
(1.00) 		0.0182
(1.00) 		0.844
(1.00) 		0.146
(1.00) 		0.382
(1.00) 		0.517
(1.00) 		0.409
(1.00)
EPS8 12 (5%) 236 0.309
(1.00) 		0.32
(1.00) 		0.813
(1.00) 		0.966
(1.00) 		0.509
(1.00) 		0.421
(1.00) 		0.138
(1.00) 		0.412
(1.00) 		1
(1.00) 		0.758
(1.00)
TGOLN2 3 (1%) 245 0.72
(1.00) 		0.311
(1.00) 		0.59
(1.00) 		0.21
(1.00) 		1
(1.00) 		1
(1.00) 		0.323
(1.00)
TPX2 6 (2%) 242 0.18
(1.00) 		0.825
(1.00) 		0.425
(1.00) 		0.356
(1.00) 		0.106
(1.00) 		0.206
(1.00) 		0.0649
(1.00) 		0.41
(1.00) 		0.141
(1.00) 		0.12
(1.00)
C14ORF118 15 (6%) 233 0.682
(1.00) 		0.0917
(1.00) 		0.0549
(1.00) 		0.623
(1.00) 		0.0862
(1.00) 		0.266
(1.00) 		0.753
(1.00) 		0.625
(1.00) 		0.738
(1.00) 		0.73
(1.00) 		1
(1.00) 		0.891
(1.00)
SLC34A3 6 (2%) 242 0.181
(1.00) 		0.444
(1.00) 		0.458
(1.00) 		1
(1.00) 		0.45
(1.00) 		1
(1.00) 		0.448
(1.00) 		0.0328
(1.00) 		0.428
(1.00) 		0.0414
(1.00)
ZNF662 13 (5%) 235 0.382
(1.00) 		0.283
(1.00) 		0.0692
(1.00) 		0.136
(1.00) 		0.782
(1.00) 		0.455
(1.00) 		0.0741
(1.00) 		0.215
(1.00) 		0.658
(1.00) 		0.0667
(1.00) 		1
(1.00) 		0.0515
(1.00)
ZDBF2 18 (7%) 230 0.371
(1.00) 		0.11
(1.00) 		0.0191
(1.00) 		0.783
(1.00) 		0.56
(1.00) 		0.963
(1.00) 		0.0781
(1.00) 		0.177
(1.00) 		0.319
(1.00) 		0.0696
(1.00) 		0.896
(1.00) 		0.239
(1.00)
SFRP4 8 (3%) 240 0.381
(1.00) 		0.283
(1.00) 		0.0288
(1.00) 		0.461
(1.00) 		0.445
(1.00) 		0.356
(1.00) 		0.179
(1.00) 		0.331
(1.00) 		0.341
(1.00) 		0.567
(1.00)
CCDC146 14 (6%) 234 0.904
(1.00) 		0.0488
(1.00) 		0.0177
(1.00) 		0.632
(1.00) 		0.119
(1.00) 		0.852
(1.00) 		0.583
(1.00) 		0.11
(1.00) 		0.277
(1.00) 		0.12
(1.00) 		1
(1.00) 		0.239
(1.00)
C7ORF60 10 (4%) 238 0.381
(1.00) 		0.278
(1.00) 		0.245
(1.00) 		1
(1.00) 		0.758
(1.00) 		0.926
(1.00) 		0.264
(1.00) 		0.219
(1.00) 		0.102
(1.00) 		0.212
(1.00) 		0.561
(1.00) 		0.124
(1.00)
ZNF649 14 (6%) 234 0.535
(1.00) 		0.248
(1.00) 		0.0766
(1.00) 		1
(1.00) 		0.757
(1.00) 		1
(1.00) 		0.943
(1.00) 		0.777
(1.00) 		0.459
(1.00) 		0.941
(1.00) 		1
(1.00) 		0.571
(1.00)
RASSF9 9 (4%) 239 0.181
(1.00) 		0.78
(1.00) 		0.718
(1.00) 		1
(1.00) 		0.708
(1.00) 		0.107
(1.00) 		0.222
(1.00) 		0.0875
(1.00)
NIPA2 8 (3%) 240 0.386
(1.00) 		0.824
(1.00) 		0.256
(1.00) 		0.868
(1.00) 		1
(1.00) 		0.905
(1.00) 		0.737
(1.00) 		0.388
(1.00) 		0.445
(1.00) 		1
(1.00)
FILIP1 16 (6%) 232 0.536
(1.00) 		0.246
(1.00) 		0.0559
(1.00) 		0.386
(1.00) 		0.0194
(1.00) 		0.932
(1.00) 		0.809
(1.00) 		0.161
(1.00) 		0.843
(1.00) 		0.626
(1.00) 		1
(1.00) 		0.877
(1.00)
PHKA2 16 (6%) 232 1
(1.00) 		0.672
(1.00) 		0.016
(1.00) 		0.188
(1.00) 		0.808
(1.00) 		0.405
(1.00) 		0.174
(1.00) 		0.0708
(1.00) 		0.0517
(1.00) 		0.00473
(1.00) 		1
(1.00) 		0.538
(1.00)
COBLL1 15 (6%) 233 0.534
(1.00) 		0.248
(1.00) 		0.208
(1.00) 		0.138
(1.00) 		0.802
(1.00) 		0.954
(1.00) 		0.222
(1.00) 		0.222
(1.00) 		0.18
(1.00) 		0.269
(1.00) 		1
(1.00) 		0.573
(1.00)
AGPAT9 8 (3%) 240 0.385
(1.00) 		0.114
(1.00) 		0.129
(1.00) 		0.412
(1.00) 		0.0305
(1.00) 		0.245
(1.00) 		1
(1.00) 		0.775
(1.00)
NOP56 11 (4%) 237 0.0245
(1.00) 		0.635
(1.00) 		0.00986
(1.00) 		0.457
(1.00) 		0.266
(1.00) 		1
(1.00) 		0.504
(1.00) 		0.182
(1.00) 		0.562
(1.00) 		0.545
(1.00)
RBL2 12 (5%) 236 0.535
(1.00) 		0.248
(1.00) 		0.0252
(1.00) 		0.86
(1.00) 		0.544
(1.00) 		0.579
(1.00) 		0.406
(1.00) 		0.0108
(1.00) 		0.139
(1.00) 		0.248
(1.00) 		0.259
(1.00) 		0.222
(1.00)
ABCC6 12 (5%) 236 0.683
(1.00) 		0.00891
(1.00) 		0.159
(1.00) 		0.86
(1.00) 		0.0781
(1.00) 		0.534
(1.00) 		0.608
(1.00) 		0.45
(1.00) 		0.287
(1.00) 		0.655
(1.00) 		0.44
(1.00) 		1
(1.00)
CCDC104 10 (4%) 238 0.029
(1.00) 		0.152
(1.00) 		0.0761
(1.00) 		0.634
(1.00) 		0.924
(1.00) 		0.549
(1.00) 		0.763
(1.00) 		0.394
(1.00) 		0.314
(1.00) 		0.789
(1.00)
MLL2 33 (13%) 215 0.459
(1.00) 		0.0511
(1.00) 		0.0091
(1.00) 		0.0199
(1.00) 		0.0752
(1.00) 		0.0656
(1.00) 		0.845
(1.00) 		0.601
(1.00) 		0.434
(1.00) 		0.246
(1.00) 		0.694
(1.00) 		0.811
(1.00)
SSH2 12 (5%) 236 0.682
(1.00) 		0.0935
(1.00) 		0.157
(1.00) 		0.824
(1.00) 		0.224
(1.00) 		0.858
(1.00) 		0.932
(1.00) 		0.93
(1.00) 		0.685
(1.00) 		0.906
(1.00) 		0.684
(1.00) 		0.833
(1.00)
ZNF709 12 (5%) 236 0.378
(1.00) 		0.286
(1.00) 		0.0262
(1.00) 		0.108
(1.00) 		0.333
(1.00) 		0.637
(1.00) 		0.14
(1.00) 		0.011
(1.00) 		0.636
(1.00) 		0.293
(1.00) 		0.26
(1.00) 		0.543
(1.00)
BRDT 14 (6%) 234 1
(1.00) 		0.914
(1.00) 		0.0331
(1.00) 		0.632
(1.00) 		0.0142
(1.00) 		0.973
(1.00) 		0.58
(1.00) 		0.112
(1.00) 		0.936
(1.00) 		0.746
(1.00) 		1
(1.00) 		0.241
(1.00)
SH3BGRL 6 (2%) 242 0.0283
(1.00) 		0.111
(1.00) 		0.695
(1.00) 		0.784
(1.00) 		0.145
(1.00) 		0.0661
(1.00) 		0.204
(1.00)
MLH3 17 (7%) 231 0.904
(1.00) 		0.0477
(1.00) 		0.0283
(1.00) 		1
(1.00) 		0.221
(1.00) 		1
(1.00) 		0.905
(1.00) 		0.474
(1.00) 		0.555
(1.00) 		0.852
(1.00) 		0.718
(1.00) 		1
(1.00)
CCDC150 12 (5%) 236 0.202
(1.00) 		0.253
(1.00) 		0.222
(1.00) 		0.152
(1.00) 		0.711
(1.00) 		0.308
(1.00) 		0.927
(1.00) 		0.632
(1.00) 		0.897
(1.00) 		0.649
(1.00)
NT5C3 7 (3%) 241 0.685
(1.00) 		0.091
(1.00) 		0.469
(1.00) 		0.331
(1.00) 		0.933
(1.00) 		0.637
(1.00) 		0.382
(1.00) 		0.067
(1.00) 		0.275
(1.00)
APAF1 13 (5%) 235 0.192
(1.00) 		0.0912
(1.00) 		0.0343
(1.00) 		0.111
(1.00) 		0.63
(1.00) 		0.94
(1.00) 		0.0952
(1.00) 		0.0116
(1.00) 		0.055
(1.00) 		0.00962
(1.00) 		0.319
(1.00) 		0.616
(1.00)
KANK4 11 (4%) 237 0.0325
(1.00) 		0.387
(1.00) 		0.042
(1.00) 		0.183
(1.00) 		0.289
(1.00) 		0.195
(1.00) 		0.919
(1.00) 		0.0487
(1.00) 		0.886
(1.00) 		0.111
(1.00)
NRIP1 13 (5%) 235 0.382
(1.00) 		0.0775
(1.00) 		0.0697
(1.00) 		0.715
(1.00) 		0.414
(1.00) 		0.858
(1.00) 		0.352
(1.00) 		0.214
(1.00) 		0.139
(1.00) 		0.0264
(1.00) 		0.852
(1.00) 		0.541
(1.00)
GTF2H1 8 (3%) 240 0.687
(1.00) 		0.206
(1.00) 		0.384
(1.00) 		0.777
(1.00) 		0.881
(1.00) 		0.233
(1.00) 		0.257
(1.00) 		0.659
(1.00) 		0.665
(1.00) 		0.148
(1.00) 		0.598
(1.00) 		0.339
(1.00)
ASXL2 14 (6%) 234 0.382
(1.00) 		0.279
(1.00) 		0.0642
(1.00) 		0.384
(1.00) 		0.729
(1.00) 		0.505
(1.00) 		0.311
(1.00) 		0.361
(1.00) 		0.489
(1.00) 		0.0154
(1.00) 		0.412
(1.00) 		0.256
(1.00)
ZNF611 12 (5%) 236 1
(1.00) 		0.0791
(1.00) 		0.456
(1.00) 		0.139
(1.00) 		0.2
(1.00) 		1
(1.00) 		0.502
(1.00) 		0.597
(1.00) 		0.425
(1.00) 		0.0655
(1.00) 		0.759
(1.00) 		0.0126
(1.00)
SUN3 6 (2%) 242 0.534
(1.00) 		0.331
(1.00) 		0.933
(1.00) 		0.147
(1.00) 		0.0211
(1.00) 		0.0181
(1.00) 		0.409
(1.00)
ZNF195 11 (4%) 237 0.0248
(1.00) 		0.189
(1.00) 		0.0979
(1.00) 		1
(1.00) 		0.229
(1.00) 		0.0291
(1.00) 		0.437
(1.00) 		0.137
(1.00) 		0.597
(1.00) 		0.34
(1.00)
EXOSC9 10 (4%) 238 0.689
(1.00) 		0.205
(1.00) 		0.135
(1.00) 		0.11
(1.00) 		0.56
(1.00) 		0.515
(1.00) 		0.568
(1.00) 		0.065
(1.00) 		0.76
(1.00) 		0.552
(1.00)
MFN2 9 (4%) 239 0.154
(1.00) 		0.764
(1.00) 		0.634
(1.00) 		0.506
(1.00) 		0.842
(1.00) 		0.18
(1.00) 		0.0362
(1.00) 		0.166
(1.00) 		0.189
(1.00) 		0.639
(1.00)
LIMA1 8 (3%) 240 0.331
(1.00) 		0.386
(1.00) 		0.633
(1.00) 		0.493
(1.00) 		0.0257
(1.00) 		0.331
(1.00) 		0.663
(1.00) 		0.241
(1.00) 		0.796
(1.00) 		0.119
(1.00)
PTPN12 10 (4%) 238 0.0567
(1.00) 		0.153
(1.00) 		0.175
(1.00) 		0.777
(1.00) 		0.00176
(1.00) 		0.0959
(1.00) 		0.359
(1.00) 		0.551
(1.00) 		1
(1.00) 		0.92
(1.00) 		1
(1.00) 		0.34
(1.00)
MTF2 9 (4%) 239 0.155
(1.00) 		0.108
(1.00) 		0.286
(1.00) 		0.762
(1.00) 		0.706
(1.00) 		0.179
(1.00) 		0.547
(1.00) 		0.123
(1.00) 		0.257
(1.00) 		0.835
(1.00)
MLL4 30 (12%) 218 0.681
(1.00) 		0.0917
(1.00) 		0.00025
(0.526) 		0.0389
(1.00) 		0.346
(1.00) 		0.844
(1.00) 		0.461
(1.00) 		0.0427
(1.00) 		0.142
(1.00) 		0.0172
(1.00) 		0.636
(1.00) 		0.643
(1.00)
C1ORF101 12 (5%) 236 0.632
(1.00) 		0.323
(1.00) 		0.169
(1.00) 		0.826
(1.00) 		0.186
(1.00) 		0.924
(1.00) 		0.466
(1.00) 		0.598
(1.00) 		0.392
(1.00) 		0.906
(1.00) 		0.143
(1.00) 		0.119
(1.00)
MBOAT2 7 (3%) 241 0.348
(1.00) 		0.733
(1.00) 		0.589
(1.00) 		0.263
(1.00) 		0.266
(1.00) 		0.893
(1.00) 		1
(1.00) 		0.557
(1.00) 		0.682
(1.00) 		0.835
(1.00)
CHD4 35 (14%) 213 0.0989
(1.00) 		0.337
(1.00) 		0.397
(1.00) 		0.744
(1.00) 		0.983
(1.00) 		0.372
(1.00) 		0.376
(1.00) 		0.917
(1.00) 		0.553
(1.00) 		0.842
(1.00) 		0.445
(1.00) 		0.401
(1.00)
SESN3 13 (5%) 235 0.535
(1.00) 		0.248
(1.00) 		0.0652
(1.00) 		0.264
(1.00) 		0.569
(1.00) 		0.56
(1.00) 		0.724
(1.00) 		0.0487
(1.00) 		0.236
(1.00) 		0.456
(1.00) 		0.223
(1.00) 		1
(1.00)
'PTEN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00395 (Fisher's exact test), Q value = 1

Table S1.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
PTEN MUTATED 11 6 9 7
PTEN WILD-TYPE 1 12 2 3

Figure S1.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'PTEN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.063

Table S2.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
PTEN MUTATED 8 0 6 7 12
PTEN WILD-TYPE 4 10 1 0 3

Figure S2.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S3.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
PTEN MUTATED 130 14 4 6 2
PTEN WILD-TYPE 26 9 50 1 0

Figure S3.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PTEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S4.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PTEN MUTATED 6 29 46
PTEN WILD-TYPE 37 10 7

Figure S4.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PTEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 1

Table S5.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PTEN MUTATED 26 21 33 9 29 14
PTEN WILD-TYPE 13 15 4 1 11 10

Figure S5.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PTEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 1

Table S6.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PTEN MUTATED 42 44 36 10
PTEN WILD-TYPE 23 20 4 7

Figure S6.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S7.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
PTEN MUTATED 18 66 74
PTEN WILD-TYPE 61 19 7

Figure S7.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PTEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S8.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
PTEN MUTATED 7 79 72
PTEN WILD-TYPE 52 28 7

Figure S8.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S9.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
PTEN MUTATED 56 21 81
PTEN WILD-TYPE 22 50 10

Figure S9.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PTEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S10.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
PTEN MUTATED 33 12 60 53
PTEN WILD-TYPE 13 45 6 18

Figure S10.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S11.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
PTEN MUTATED 49 11 10
PTEN WILD-TYPE 6 24 16

Figure S11.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S12.  Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
PTEN MUTATED 16 42 12
PTEN WILD-TYPE 27 4 15

Figure S12.  Get High-res Image Gene #1: 'PTEN MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PIK3R1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0675 (Fisher's exact test), Q value = 1

Table S13.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
PIK3R1 MUTATED 5 2 6 3
PIK3R1 WILD-TYPE 7 16 5 7
'PIK3R1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0609 (Fisher's exact test), Q value = 1

Table S14.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
PIK3R1 MUTATED 3 0 4 3 6
PIK3R1 WILD-TYPE 9 10 3 4 9
'PIK3R1 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.42

Table S15.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
PIK3R1 MUTATED 63 8 6 4 1
PIK3R1 WILD-TYPE 93 15 48 3 1

Figure S13.  Get High-res Image Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PIK3R1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.063

Table S16.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PIK3R1 MUTATED 5 11 29
PIK3R1 WILD-TYPE 38 28 24

Figure S14.  Get High-res Image Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PIK3R1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S17.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PIK3R1 MUTATED 13 11 18 3 16 9
PIK3R1 WILD-TYPE 26 25 19 7 24 15
'PIK3R1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S18.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PIK3R1 MUTATED 21 24 19 6
PIK3R1 WILD-TYPE 44 40 21 11
'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.23

Table S19.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
PIK3R1 MUTATED 12 36 33
PIK3R1 WILD-TYPE 67 49 48

Figure S15.  Get High-res Image Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.042

Table S20.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
PIK3R1 MUTATED 6 39 36
PIK3R1 WILD-TYPE 53 68 43

Figure S16.  Get High-res Image Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 1

Table S21.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
PIK3R1 MUTATED 30 14 37
PIK3R1 WILD-TYPE 48 57 54

Figure S17.  Get High-res Image Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0251 (Fisher's exact test), Q value = 1

Table S22.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
PIK3R1 MUTATED 18 10 26 27
PIK3R1 WILD-TYPE 28 47 40 44

Figure S18.  Get High-res Image Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.049 (Fisher's exact test), Q value = 1

Table S23.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
PIK3R1 MUTATED 23 6 8
PIK3R1 WILD-TYPE 32 29 18

Figure S19.  Get High-res Image Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S24.  Gene #2: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
PIK3R1 MUTATED 9 17 11
PIK3R1 WILD-TYPE 34 29 16
'TP53 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.084

Table S25.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
TP53 MUTATED 2 13 1 0
TP53 WILD-TYPE 10 5 10 10

Figure S20.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TP53 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S26.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
TP53 MUTATED 4 10 1 1 0
TP53 WILD-TYPE 8 0 6 6 15

Figure S21.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S27.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
TP53 MUTATED 11 5 50 2 0
TP53 WILD-TYPE 145 18 4 5 2

Figure S22.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S28.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
TP53 MUTATED 32 3 5
TP53 WILD-TYPE 11 36 48

Figure S23.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.11

Table S29.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TP53 MUTATED 9 19 4 2 2 8
TP53 WILD-TYPE 30 17 33 8 38 16

Figure S24.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S30.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TP53 MUTATED 21 13 6 4
TP53 WILD-TYPE 44 51 34 13
'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S31.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
TP53 MUTATED 58 8 3
TP53 WILD-TYPE 21 77 78

Figure S25.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S32.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
TP53 MUTATED 48 16 5
TP53 WILD-TYPE 11 91 74

Figure S26.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S33.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
TP53 MUTATED 9 47 8
TP53 WILD-TYPE 69 24 83

Figure S27.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S34.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
TP53 MUTATED 2 43 3 16
TP53 WILD-TYPE 44 14 63 55

Figure S28.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S35.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
TP53 MUTATED 5 24 7
TP53 WILD-TYPE 50 11 19

Figure S29.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S36.  Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
TP53 MUTATED 23 3 10
TP53 WILD-TYPE 20 43 17

Figure S30.  Get High-res Image Gene #3: 'TP53 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CTCF MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S37.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CTCF MUTATED 3 1 4 1
CTCF WILD-TYPE 9 17 7 9
'CTCF MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S38.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CTCF MUTATED 3 0 3 1 2
CTCF WILD-TYPE 9 10 4 6 13
'CTCF MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.063

Table S39.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
CTCF MUTATED 38 1 0 2 0
CTCF WILD-TYPE 118 22 54 5 2

Figure S31.  Get High-res Image Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CTCF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 1

Table S40.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CTCF MUTATED 3 10 8
CTCF WILD-TYPE 40 29 45
'CTCF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0621 (Fisher's exact test), Q value = 1

Table S41.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CTCF MUTATED 9 3 5 5 9 3
CTCF WILD-TYPE 30 33 32 5 31 21
'CTCF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S42.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CTCF MUTATED 12 10 10 2
CTCF WILD-TYPE 53 54 30 15
'CTCF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00086 (Fisher's exact test), Q value = 1

Table S43.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
CTCF MUTATED 5 16 23
CTCF WILD-TYPE 74 69 58

Figure S32.  Get High-res Image Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CTCF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00153 (Fisher's exact test), Q value = 1

Table S44.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
CTCF MUTATED 3 19 22
CTCF WILD-TYPE 56 88 57

Figure S33.  Get High-res Image Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CTCF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0065 (Fisher's exact test), Q value = 1

Table S45.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
CTCF MUTATED 16 5 23
CTCF WILD-TYPE 62 66 68

Figure S34.  Get High-res Image Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CTCF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0578 (Fisher's exact test), Q value = 1

Table S46.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
CTCF MUTATED 11 5 17 11
CTCF WILD-TYPE 35 52 49 60
'CTCF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 1

Table S47.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
CTCF MUTATED 12 1 1
CTCF WILD-TYPE 43 34 25

Figure S35.  Get High-res Image Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'CTCF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S48.  Gene #4: 'CTCF MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
CTCF MUTATED 2 9 3
CTCF WILD-TYPE 41 37 24
'FBXW7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S49.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
FBXW7 MUTATED 3 4 4 0
FBXW7 WILD-TYPE 9 14 7 10
'FBXW7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S50.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
FBXW7 MUTATED 3 3 3 1 1
FBXW7 WILD-TYPE 9 7 4 6 14
'FBXW7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S51.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
FBXW7 MUTATED 24 2 12 1 0
FBXW7 WILD-TYPE 132 21 42 6 2
'FBXW7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0357 (Fisher's exact test), Q value = 1

Table S52.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
FBXW7 MUTATED 11 2 9
FBXW7 WILD-TYPE 32 37 44

Figure S36.  Get High-res Image Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FBXW7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S53.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
FBXW7 MUTATED 10 5 5 4 3 4
FBXW7 WILD-TYPE 29 31 32 6 37 20
'FBXW7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S54.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
FBXW7 MUTATED 14 7 6 4
FBXW7 WILD-TYPE 51 57 34 13
'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 1

Table S55.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
FBXW7 MUTATED 19 10 10
FBXW7 WILD-TYPE 60 75 71
'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.021 (Fisher's exact test), Q value = 1

Table S56.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
FBXW7 MUTATED 16 11 12
FBXW7 WILD-TYPE 43 96 67

Figure S37.  Get High-res Image Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S57.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
FBXW7 MUTATED 11 12 12
FBXW7 WILD-TYPE 67 59 79
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.058 (Fisher's exact test), Q value = 1

Table S58.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
FBXW7 MUTATED 3 14 7 11
FBXW7 WILD-TYPE 43 43 59 60
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S59.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
FBXW7 MUTATED 6 8 4
FBXW7 WILD-TYPE 49 27 22
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0647 (Fisher's exact test), Q value = 1

Table S60.  Gene #5: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
FBXW7 MUTATED 10 3 5
FBXW7 WILD-TYPE 33 43 22
'KRAS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S61.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
KRAS MUTATED 5 2 3 1
KRAS WILD-TYPE 7 16 8 9
'KRAS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0123 (Fisher's exact test), Q value = 1

Table S62.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
KRAS MUTATED 3 0 3 4 1
KRAS WILD-TYPE 9 10 4 3 14

Figure S38.  Get High-res Image Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00136 (Fisher's exact test), Q value = 1

Table S63.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
KRAS MUTATED 42 4 2 2 0
KRAS WILD-TYPE 114 19 52 5 2

Figure S39.  Get High-res Image Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0541 (Fisher's exact test), Q value = 1

Table S64.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
KRAS MUTATED 5 8 17
KRAS WILD-TYPE 38 31 36
'KRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S65.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
KRAS MUTATED 6 9 12 3 5 5
KRAS WILD-TYPE 33 27 25 7 35 19
'KRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S66.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
KRAS MUTATED 14 10 14 2
KRAS WILD-TYPE 51 54 26 15
'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S67.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
KRAS MUTATED 11 20 21
KRAS WILD-TYPE 68 65 60
'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 1

Table S68.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
KRAS MUTATED 5 26 21
KRAS WILD-TYPE 54 81 58

Figure S40.  Get High-res Image Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0639 (Fisher's exact test), Q value = 1

Table S69.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
KRAS MUTATED 18 9 25
KRAS WILD-TYPE 60 62 66
'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 1

Table S70.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
KRAS MUTATED 5 7 19 21
KRAS WILD-TYPE 41 50 47 50

Figure S41.  Get High-res Image Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 1

Table S71.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
KRAS MUTATED 14 3 8
KRAS WILD-TYPE 41 32 18
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0387 (Fisher's exact test), Q value = 1

Table S72.  Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
KRAS MUTATED 4 14 7
KRAS WILD-TYPE 39 32 20

Figure S42.  Get High-res Image Gene #6: 'KRAS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARHGAP35 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S73.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ARHGAP35 MUTATED 4 5 3 0
ARHGAP35 WILD-TYPE 8 13 8 10
'ARHGAP35 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S74.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ARHGAP35 MUTATED 4 2 2 1 3
ARHGAP35 WILD-TYPE 8 8 5 6 12
'ARHGAP35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S75.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ARHGAP35 MUTATED 26 1 7 2 0
ARHGAP35 WILD-TYPE 130 22 47 5 2
'ARHGAP35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S76.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ARHGAP35 MUTATED 6 5 8
ARHGAP35 WILD-TYPE 37 34 45
'ARHGAP35 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0496 (Fisher's exact test), Q value = 1

Table S77.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ARHGAP35 MUTATED 11 8 2 2 4 2
ARHGAP35 WILD-TYPE 28 28 35 8 36 22

Figure S43.  Get High-res Image Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ARHGAP35 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S78.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ARHGAP35 MUTATED 16 7 4 2
ARHGAP35 WILD-TYPE 49 57 36 15
'ARHGAP35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S79.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ARHGAP35 MUTATED 16 11 9
ARHGAP35 WILD-TYPE 63 74 72
'ARHGAP35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S80.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ARHGAP35 MUTATED 10 16 10
ARHGAP35 WILD-TYPE 49 91 69
'ARHGAP35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S81.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ARHGAP35 MUTATED 12 11 10
ARHGAP35 WILD-TYPE 66 60 81
'ARHGAP35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S82.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ARHGAP35 MUTATED 4 11 6 12
ARHGAP35 WILD-TYPE 42 46 60 59
'ARHGAP35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S83.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ARHGAP35 MUTATED 5 7 3
ARHGAP35 WILD-TYPE 50 28 23
'ARHGAP35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S84.  Gene #7: 'ARHGAP35 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ARHGAP35 MUTATED 7 3 5
ARHGAP35 WILD-TYPE 36 43 22
'PIK3CA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S85.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
PIK3CA MUTATED 7 8 6 6
PIK3CA WILD-TYPE 5 10 5 4
'PIK3CA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S86.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
PIK3CA MUTATED 5 4 6 4 8
PIK3CA WILD-TYPE 7 6 1 3 7
'PIK3CA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S87.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
PIK3CA MUTATED 87 11 24 4 2
PIK3CA WILD-TYPE 69 12 30 3 0
'PIK3CA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S88.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PIK3CA MUTATED 21 22 26
PIK3CA WILD-TYPE 22 17 27
'PIK3CA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S89.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PIK3CA MUTATED 17 22 19 7 18 15
PIK3CA WILD-TYPE 22 14 18 3 22 9
'PIK3CA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S90.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PIK3CA MUTATED 32 32 24 10
PIK3CA WILD-TYPE 33 32 16 7
'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S91.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
PIK3CA MUTATED 39 46 45
PIK3CA WILD-TYPE 40 39 36
'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S92.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
PIK3CA MUTATED 26 62 42
PIK3CA WILD-TYPE 33 45 37
'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S93.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
PIK3CA MUTATED 42 33 53
PIK3CA WILD-TYPE 36 38 38
'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S94.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
PIK3CA MUTATED 26 25 37 40
PIK3CA WILD-TYPE 20 32 29 31
'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S95.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
PIK3CA MUTATED 31 14 14
PIK3CA WILD-TYPE 24 21 12
'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S96.  Gene #8: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
PIK3CA MUTATED 20 27 12
PIK3CA WILD-TYPE 23 19 15
'ARID1A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S97.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ARID1A MUTATED 5 3 4 5
ARID1A WILD-TYPE 7 15 7 5
'ARID1A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0722 (Fisher's exact test), Q value = 1

Table S98.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ARID1A MUTATED 5 0 3 4 5
ARID1A WILD-TYPE 7 10 4 3 10
'ARID1A MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S99.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ARID1A MUTATED 68 3 3 5 1
ARID1A WILD-TYPE 88 20 51 2 1

Figure S44.  Get High-res Image Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARID1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S100.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ARID1A MUTATED 9 16 20
ARID1A WILD-TYPE 34 23 33
'ARID1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 1

Table S101.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ARID1A MUTATED 12 13 18 3 18 2
ARID1A WILD-TYPE 27 23 19 7 22 22

Figure S45.  Get High-res Image Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ARID1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S102.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ARID1A MUTATED 22 24 17 3
ARID1A WILD-TYPE 43 40 23 14
'ARID1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 1

Table S103.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ARID1A MUTATED 17 33 32
ARID1A WILD-TYPE 62 52 49

Figure S46.  Get High-res Image Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'ARID1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.063

Table S104.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ARID1A MUTATED 6 45 31
ARID1A WILD-TYPE 53 62 48

Figure S47.  Get High-res Image Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0347 (Fisher's exact test), Q value = 1

Table S105.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ARID1A MUTATED 26 16 38
ARID1A WILD-TYPE 52 55 53

Figure S48.  Get High-res Image Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00202 (Fisher's exact test), Q value = 1

Table S106.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ARID1A MUTATED 15 8 28 29
ARID1A WILD-TYPE 31 49 38 42

Figure S49.  Get High-res Image Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0319 (Fisher's exact test), Q value = 1

Table S107.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ARID1A MUTATED 24 6 10
ARID1A WILD-TYPE 31 29 16

Figure S50.  Get High-res Image Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00426 (Fisher's exact test), Q value = 1

Table S108.  Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ARID1A MUTATED 7 22 11
ARID1A WILD-TYPE 36 24 16

Figure S51.  Get High-res Image Gene #9: 'ARID1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S109.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CTNNB1 MUTATED 0 3 4 10
CTNNB1 WILD-TYPE 12 15 7 0

Figure S52.  Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.042

Table S110.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CTNNB1 MUTATED 4 0 1 0 12
CTNNB1 WILD-TYPE 8 10 6 7 3

Figure S53.  Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S111.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
CTNNB1 MUTATED 59 11 1 1 0
CTNNB1 WILD-TYPE 97 12 53 6 2

Figure S54.  Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CTNNB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00322 (Fisher's exact test), Q value = 1

Table S112.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CTNNB1 MUTATED 4 13 20
CTNNB1 WILD-TYPE 39 26 33

Figure S55.  Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'CTNNB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S113.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CTNNB1 MUTATED 6 10 6 0 32 10
CTNNB1 WILD-TYPE 33 26 31 10 8 14

Figure S56.  Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CTNNB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00533 (Fisher's exact test), Q value = 1

Table S114.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CTNNB1 MUTATED 15 32 10 7
CTNNB1 WILD-TYPE 50 32 30 10

Figure S57.  Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S115.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
CTNNB1 MUTATED 10 47 16
CTNNB1 WILD-TYPE 69 38 65

Figure S58.  Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S116.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
CTNNB1 MUTATED 1 59 13
CTNNB1 WILD-TYPE 58 48 66

Figure S59.  Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S117.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
CTNNB1 MUTATED 49 4 18
CTNNB1 WILD-TYPE 29 67 73

Figure S60.  Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.021

Table S118.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
CTNNB1 MUTATED 40 3 11 17
CTNNB1 WILD-TYPE 6 54 55 54

Figure S61.  Get High-res Image Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S119.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
CTNNB1 MUTATED 15 4 8
CTNNB1 WILD-TYPE 40 31 18
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S120.  Gene #10: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
CTNNB1 MUTATED 7 13 7
CTNNB1 WILD-TYPE 36 33 20
'FGFR2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S121.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
FGFR2 MUTATED 3 2 1 0
FGFR2 WILD-TYPE 9 16 10 10
'FGFR2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S122.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
FGFR2 MUTATED 2 0 1 2 1
FGFR2 WILD-TYPE 10 10 6 5 14
'FGFR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S123.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
FGFR2 MUTATED 22 3 3 2 0
FGFR2 WILD-TYPE 134 20 51 5 2
'FGFR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S124.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
FGFR2 MUTATED 5 5 7
FGFR2 WILD-TYPE 38 34 46
'FGFR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S125.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
FGFR2 MUTATED 6 5 6 1 4 3
FGFR2 WILD-TYPE 33 31 31 9 36 21
'FGFR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S126.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
FGFR2 MUTATED 7 8 6 4
FGFR2 WILD-TYPE 58 56 34 13
'FGFR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S127.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
FGFR2 MUTATED 10 10 10
FGFR2 WILD-TYPE 69 75 71
'FGFR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S128.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
FGFR2 MUTATED 4 16 10
FGFR2 WILD-TYPE 55 91 69
'FGFR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S129.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
FGFR2 MUTATED 12 6 12
FGFR2 WILD-TYPE 66 65 79
'FGFR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0303 (Fisher's exact test), Q value = 1

Table S130.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
FGFR2 MUTATED 1 6 9 14
FGFR2 WILD-TYPE 45 51 57 57

Figure S62.  Get High-res Image Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FGFR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S131.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
FGFR2 MUTATED 8 6 2
FGFR2 WILD-TYPE 47 29 24
'FGFR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S132.  Gene #11: 'FGFR2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
FGFR2 MUTATED 6 7 3
FGFR2 WILD-TYPE 37 39 24
'ZFHX3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S133.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZFHX3 MUTATED 6 6 2 2
ZFHX3 WILD-TYPE 6 12 9 8
'ZFHX3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S134.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZFHX3 MUTATED 4 2 2 5 3
ZFHX3 WILD-TYPE 8 8 5 2 12
'ZFHX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0392 (Fisher's exact test), Q value = 1

Table S135.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ZFHX3 MUTATED 34 3 3 2 0
ZFHX3 WILD-TYPE 122 20 51 5 2

Figure S63.  Get High-res Image Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZFHX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 1

Table S136.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZFHX3 MUTATED 5 1 12
ZFHX3 WILD-TYPE 38 38 41

Figure S64.  Get High-res Image Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ZFHX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S137.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZFHX3 MUTATED 7 11 5 3 5 4
ZFHX3 WILD-TYPE 32 25 32 7 35 20
'ZFHX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S138.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZFHX3 MUTATED 12 12 7 4
ZFHX3 WILD-TYPE 53 52 33 13
'ZFHX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S139.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ZFHX3 MUTATED 13 16 14
ZFHX3 WILD-TYPE 66 69 67
'ZFHX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S140.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ZFHX3 MUTATED 6 23 14
ZFHX3 WILD-TYPE 53 84 65
'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S141.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ZFHX3 MUTATED 17 8 16
ZFHX3 WILD-TYPE 61 63 75
'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0686 (Fisher's exact test), Q value = 1

Table S142.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ZFHX3 MUTATED 4 8 10 19
ZFHX3 WILD-TYPE 42 49 56 52
'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S143.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ZFHX3 MUTATED 9 3 4
ZFHX3 WILD-TYPE 46 32 22
'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S144.  Gene #12: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ZFHX3 MUTATED 6 5 5
ZFHX3 WILD-TYPE 37 41 22
'TCP11L2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 1

Table S145.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
TCP11L2 MUTATED 4 2 0 0
TCP11L2 WILD-TYPE 8 16 11 10

Figure S65.  Get High-res Image Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'TCP11L2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0191 (Fisher's exact test), Q value = 1

Table S146.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
TCP11L2 MUTATED 2 0 1 3 0
TCP11L2 WILD-TYPE 10 10 6 4 15

Figure S66.  Get High-res Image Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'TCP11L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 1

Table S147.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
TCP11L2 MUTATED 12 0 0 2 0
TCP11L2 WILD-TYPE 144 23 54 5 2

Figure S67.  Get High-res Image Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TCP11L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S148.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
TCP11L2 MUTATED 1 0 5
TCP11L2 WILD-TYPE 42 39 48
'TCP11L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S149.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TCP11L2 MUTATED 2 4 3 2 1 0
TCP11L2 WILD-TYPE 37 32 34 8 39 24
'TCP11L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S150.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TCP11L2 MUTATED 3 4 5 0
TCP11L2 WILD-TYPE 62 60 35 17
'TCP11L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S151.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
TCP11L2 MUTATED 6 6 2
TCP11L2 WILD-TYPE 73 79 79
'TCP11L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0317 (Fisher's exact test), Q value = 1

Table S152.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
TCP11L2 MUTATED 1 11 2
TCP11L2 WILD-TYPE 58 96 77

Figure S68.  Get High-res Image Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TCP11L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S153.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
TCP11L2 MUTATED 6 4 3
TCP11L2 WILD-TYPE 72 67 88
'TCP11L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0111 (Fisher's exact test), Q value = 1

Table S154.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
TCP11L2 MUTATED 1 4 0 8
TCP11L2 WILD-TYPE 45 53 66 63

Figure S69.  Get High-res Image Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'TCP11L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S155.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
TCP11L2 MUTATED 1 2 1
TCP11L2 WILD-TYPE 54 33 25
'TCP11L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S156.  Gene #13: 'TCP11L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
TCP11L2 MUTATED 1 1 2
TCP11L2 WILD-TYPE 42 45 25
'SPOP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S157.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
SPOP MUTATED 2 1 0 2
SPOP WILD-TYPE 10 17 11 8
'SPOP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S158.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
SPOP MUTATED 0 1 1 1 2
SPOP WILD-TYPE 12 9 6 6 13
'SPOP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S159.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
SPOP MUTATED 15 2 3 1 0
SPOP WILD-TYPE 141 21 51 6 2
'SPOP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S160.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SPOP MUTATED 4 1 5
SPOP WILD-TYPE 39 38 48
'SPOP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S161.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SPOP MUTATED 5 3 2 1 3 1
SPOP WILD-TYPE 34 33 35 9 37 23
'SPOP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S162.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SPOP MUTATED 4 6 4 1
SPOP WILD-TYPE 61 58 36 16
'SPOP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S163.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
SPOP MUTATED 5 11 5
SPOP WILD-TYPE 74 74 76
'SPOP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S164.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
SPOP MUTATED 4 11 6
SPOP WILD-TYPE 55 96 73
'SPOP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S165.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
SPOP MUTATED 7 7 7
SPOP WILD-TYPE 71 64 84
'SPOP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S166.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
SPOP MUTATED 6 5 4 6
SPOP WILD-TYPE 40 52 62 65
'SPOP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S167.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
SPOP MUTATED 3 4 2
SPOP WILD-TYPE 52 31 24
'SPOP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S168.  Gene #14: 'SPOP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
SPOP MUTATED 3 2 4
SPOP WILD-TYPE 40 44 23
'RBMX MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S169.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
RBMX MUTATED 3 2 0 0
RBMX WILD-TYPE 9 16 11 10
'RBMX MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.092 (Fisher's exact test), Q value = 1

Table S170.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
RBMX MUTATED 2 0 1 2 0
RBMX WILD-TYPE 10 10 6 5 15
'RBMX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S171.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
RBMX MUTATED 12 0 0 0 0
RBMX WILD-TYPE 144 23 54 7 2
'RBMX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S172.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
RBMX MUTATED 1 0 3
RBMX WILD-TYPE 42 39 50
'RBMX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 1

Table S173.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RBMX MUTATED 1 3 3 3 0 1
RBMX WILD-TYPE 38 33 34 7 40 23

Figure S70.  Get High-res Image Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RBMX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S174.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RBMX MUTATED 3 3 4 1
RBMX WILD-TYPE 62 61 36 16
'RBMX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S175.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
RBMX MUTATED 3 7 3
RBMX WILD-TYPE 76 78 78
'RBMX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S176.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
RBMX MUTATED 2 6 5
RBMX WILD-TYPE 57 101 74
'RBMX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S177.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
RBMX MUTATED 4 4 5
RBMX WILD-TYPE 74 67 86
'RBMX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0259 (Fisher's exact test), Q value = 1

Table S178.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
RBMX MUTATED 1 2 1 9
RBMX WILD-TYPE 45 55 65 62

Figure S71.  Get High-res Image Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'RBMX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S179.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
RBMX MUTATED 3 1 0
RBMX WILD-TYPE 52 34 26
'RBMX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S180.  Gene #15: 'RBMX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
RBMX MUTATED 2 1 1
RBMX WILD-TYPE 41 45 26
'SOX17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00467 (Fisher's exact test), Q value = 1

Table S181.  Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
SOX17 MUTATED 3 2 0 1 1
SOX17 WILD-TYPE 153 21 54 6 1

Figure S72.  Get High-res Image Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SOX17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S182.  Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SOX17 MUTATED 0 3 1
SOX17 WILD-TYPE 43 36 52
'SOX17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S183.  Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SOX17 MUTATED 2 0 3 0 1 0
SOX17 WILD-TYPE 37 36 34 10 39 24
'SOX17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S184.  Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SOX17 MUTATED 1 5 0 0
SOX17 WILD-TYPE 64 59 40 17
'SOX17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S185.  Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
SOX17 MUTATED 1 1 5
SOX17 WILD-TYPE 78 84 76
'SOX17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S186.  Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
SOX17 MUTATED 1 2 4
SOX17 WILD-TYPE 58 105 75
'SOX17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S187.  Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
SOX17 MUTATED 3 1 3
SOX17 WILD-TYPE 75 70 88
'SOX17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S188.  Gene #16: 'SOX17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
SOX17 MUTATED 1 1 4 1
SOX17 WILD-TYPE 45 56 62 70
'NFE2L2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0907 (Fisher's exact test), Q value = 1

Table S189.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
NFE2L2 MUTATED 0 1 3 0
NFE2L2 WILD-TYPE 12 17 8 10
'NFE2L2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S190.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
NFE2L2 MUTATED 1 0 2 0 1
NFE2L2 WILD-TYPE 11 10 5 7 14
'NFE2L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0153 (Fisher's exact test), Q value = 1

Table S191.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
NFE2L2 MUTATED 10 3 0 2 0
NFE2L2 WILD-TYPE 146 20 54 5 2

Figure S73.  Get High-res Image Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NFE2L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S192.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
NFE2L2 MUTATED 1 3 3
NFE2L2 WILD-TYPE 42 36 50
'NFE2L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S193.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
NFE2L2 MUTATED 3 2 4 2 0 2
NFE2L2 WILD-TYPE 36 34 33 8 40 22
'NFE2L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S194.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
NFE2L2 MUTATED 3 3 6 1
NFE2L2 WILD-TYPE 62 61 34 16
'NFE2L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 1

Table S195.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
NFE2L2 MUTATED 2 2 10
NFE2L2 WILD-TYPE 77 83 71

Figure S74.  Get High-res Image Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NFE2L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0195 (Fisher's exact test), Q value = 1

Table S196.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
NFE2L2 MUTATED 3 2 9
NFE2L2 WILD-TYPE 56 105 70

Figure S75.  Get High-res Image Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'NFE2L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S197.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
NFE2L2 MUTATED 3 3 9
NFE2L2 WILD-TYPE 75 68 82
'NFE2L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S198.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
NFE2L2 MUTATED 0 3 7 5
NFE2L2 WILD-TYPE 46 54 59 66
'NFE2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S199.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
NFE2L2 MUTATED 5 1 0
NFE2L2 WILD-TYPE 50 34 26
'NFE2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S200.  Gene #17: 'NFE2L2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
NFE2L2 MUTATED 1 4 1
NFE2L2 WILD-TYPE 42 42 26
'CCND1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S201.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CCND1 MUTATED 2 1 0 1
CCND1 WILD-TYPE 10 17 11 9
'CCND1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S202.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CCND1 MUTATED 1 0 1 1 1
CCND1 WILD-TYPE 11 10 6 6 14
'CCND1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0795 (Fisher's exact test), Q value = 1

Table S203.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
CCND1 MUTATED 14 0 0 0 0
CCND1 WILD-TYPE 142 23 54 7 2
'CCND1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S204.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CCND1 MUTATED 1 1 5
CCND1 WILD-TYPE 42 38 48
'CCND1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S205.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CCND1 MUTATED 4 3 1 0 1 1
CCND1 WILD-TYPE 35 33 36 10 39 23
'CCND1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S206.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CCND1 MUTATED 3 4 2 1
CCND1 WILD-TYPE 62 60 38 16
'CCND1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S207.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
CCND1 MUTATED 3 7 4
CCND1 WILD-TYPE 76 78 77
'CCND1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0305 (Fisher's exact test), Q value = 1

Table S208.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
CCND1 MUTATED 0 10 4
CCND1 WILD-TYPE 59 97 75

Figure S76.  Get High-res Image Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CCND1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.06 (Fisher's exact test), Q value = 1

Table S209.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
CCND1 MUTATED 8 1 5
CCND1 WILD-TYPE 70 70 86
'CCND1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S210.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
CCND1 MUTATED 3 1 4 6
CCND1 WILD-TYPE 43 56 62 65
'CCND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S211.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
CCND1 MUTATED 3 0 1
CCND1 WILD-TYPE 52 35 25
'CCND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S212.  Gene #18: 'CCND1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
CCND1 MUTATED 0 3 1
CCND1 WILD-TYPE 43 43 26
'GNPTAB MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S213.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
GNPTAB MUTATED 1 3 0 0
GNPTAB WILD-TYPE 11 15 11 10
'GNPTAB MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0782 (Fisher's exact test), Q value = 1

Table S214.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
GNPTAB MUTATED 3 0 1 0 0
GNPTAB WILD-TYPE 9 10 6 7 15
'GNPTAB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00728 (Fisher's exact test), Q value = 1

Table S215.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
GNPTAB MUTATED 16 0 1 3 0
GNPTAB WILD-TYPE 140 23 53 4 2

Figure S77.  Get High-res Image Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GNPTAB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S216.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
GNPTAB MUTATED 3 1 8
GNPTAB WILD-TYPE 40 38 45
'GNPTAB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S217.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
GNPTAB MUTATED 5 5 4 1 1 1
GNPTAB WILD-TYPE 34 31 33 9 39 23
'GNPTAB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S218.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
GNPTAB MUTATED 5 7 4 1
GNPTAB WILD-TYPE 60 57 36 16
'GNPTAB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S219.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
GNPTAB MUTATED 9 8 3
GNPTAB WILD-TYPE 70 77 78
'GNPTAB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0547 (Fisher's exact test), Q value = 1

Table S220.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
GNPTAB MUTATED 2 14 4
GNPTAB WILD-TYPE 57 93 75
'GNPTAB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S221.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
GNPTAB MUTATED 8 6 5
GNPTAB WILD-TYPE 70 65 86
'GNPTAB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S222.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
GNPTAB MUTATED 3 5 2 9
GNPTAB WILD-TYPE 43 52 64 62
'GNPTAB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S223.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
GNPTAB MUTATED 5 3 2
GNPTAB WILD-TYPE 50 32 24
'GNPTAB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S224.  Gene #19: 'GNPTAB MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
GNPTAB MUTATED 3 2 5
GNPTAB WILD-TYPE 40 44 22
'ARID5B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S225.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ARID5B MUTATED 3 3 2 2
ARID5B WILD-TYPE 9 15 9 8
'ARID5B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S226.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ARID5B MUTATED 4 0 3 1 2
ARID5B WILD-TYPE 8 10 4 6 13
'ARID5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00613 (Fisher's exact test), Q value = 1

Table S227.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ARID5B MUTATED 25 2 0 1 0
ARID5B WILD-TYPE 131 21 54 6 2

Figure S78.  Get High-res Image Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ARID5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S228.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ARID5B MUTATED 1 1 6
ARID5B WILD-TYPE 42 38 47
'ARID5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S229.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ARID5B MUTATED 4 5 5 4 3 3
ARID5B WILD-TYPE 35 31 32 6 37 21
'ARID5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S230.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ARID5B MUTATED 4 10 7 3
ARID5B WILD-TYPE 61 54 33 14
'ARID5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S231.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ARID5B MUTATED 5 13 11
ARID5B WILD-TYPE 74 72 70
'ARID5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0487 (Fisher's exact test), Q value = 1

Table S232.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ARID5B MUTATED 2 16 11
ARID5B WILD-TYPE 57 91 68

Figure S79.  Get High-res Image Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ARID5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S233.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ARID5B MUTATED 8 5 14
ARID5B WILD-TYPE 70 66 77
'ARID5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S234.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ARID5B MUTATED 4 3 10 10
ARID5B WILD-TYPE 42 54 56 61
'ARID5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S235.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ARID5B MUTATED 5 1 0
ARID5B WILD-TYPE 50 34 26
'ARID5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S236.  Gene #20: 'ARID5B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ARID5B MUTATED 0 3 3
ARID5B WILD-TYPE 43 43 24
'DNER MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S237.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
DNER MUTATED 3 2 0 0
DNER WILD-TYPE 9 16 11 10
'DNER MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.092 (Fisher's exact test), Q value = 1

Table S238.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
DNER MUTATED 2 0 2 1 0
DNER WILD-TYPE 10 10 5 6 15
'DNER MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00165 (Fisher's exact test), Q value = 1

Table S239.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
DNER MUTATED 15 0 0 3 0
DNER WILD-TYPE 141 23 54 4 2

Figure S80.  Get High-res Image Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'DNER MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S240.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
DNER MUTATED 3 1 4
DNER WILD-TYPE 40 38 49
'DNER MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 1

Table S241.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
DNER MUTATED 4 4 4 3 0 0
DNER WILD-TYPE 35 32 33 7 40 24

Figure S81.  Get High-res Image Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DNER MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S242.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
DNER MUTATED 4 5 6 0
DNER WILD-TYPE 61 59 34 17
'DNER MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S243.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
DNER MUTATED 6 7 5
DNER WILD-TYPE 73 78 76
'DNER MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0625 (Fisher's exact test), Q value = 1

Table S244.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
DNER MUTATED 1 12 5
DNER WILD-TYPE 58 95 74
'DNER MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S245.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
DNER MUTATED 7 5 5
DNER WILD-TYPE 71 66 86
'DNER MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S246.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
DNER MUTATED 1 5 4 7
DNER WILD-TYPE 45 52 62 64
'DNER MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S247.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
DNER MUTATED 4 1 2
DNER WILD-TYPE 51 34 24
'DNER MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S248.  Gene #21: 'DNER MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
DNER MUTATED 2 3 2
DNER WILD-TYPE 41 43 25
'EP300 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S249.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
EP300 MUTATED 1 1 1 0
EP300 WILD-TYPE 11 17 10 10
'EP300 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S250.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
EP300 MUTATED 1 0 1 0 1
EP300 WILD-TYPE 11 10 6 7 14
'EP300 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 1

Table S251.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
EP300 MUTATED 18 2 0 1 0
EP300 WILD-TYPE 138 21 54 6 2

Figure S82.  Get High-res Image Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'EP300 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S252.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
EP300 MUTATED 1 2 6
EP300 WILD-TYPE 42 37 47
'EP300 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S253.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
EP300 MUTATED 5 7 3 2 3 0
EP300 WILD-TYPE 34 29 34 8 37 24
'EP300 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S254.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
EP300 MUTATED 8 7 5 0
EP300 WILD-TYPE 57 57 35 17
'EP300 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S255.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
EP300 MUTATED 4 9 7
EP300 WILD-TYPE 75 76 74
'EP300 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S256.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
EP300 MUTATED 2 12 6
EP300 WILD-TYPE 57 95 73
'EP300 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S257.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
EP300 MUTATED 10 5 6
EP300 WILD-TYPE 68 66 85
'EP300 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S258.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
EP300 MUTATED 3 3 6 9
EP300 WILD-TYPE 43 54 60 62
'EP300 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S259.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
EP300 MUTATED 3 1 2
EP300 WILD-TYPE 52 34 24
'EP300 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S260.  Gene #22: 'EP300 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
EP300 MUTATED 2 1 3
EP300 WILD-TYPE 41 45 24
'MAX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 1

Table S261.  Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
MAX MUTATED 9 0 0 2 0
MAX WILD-TYPE 147 23 54 5 2

Figure S83.  Get High-res Image Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MAX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S262.  Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MAX MUTATED 1 3 3
MAX WILD-TYPE 42 36 50
'MAX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S263.  Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MAX MUTATED 3 3 2 0 1 0
MAX WILD-TYPE 36 33 35 10 39 24
'MAX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S264.  Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MAX MUTATED 3 4 2 0
MAX WILD-TYPE 62 60 38 17
'MAX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S265.  Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
MAX MUTATED 5 4 2
MAX WILD-TYPE 74 81 79
'MAX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S266.  Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
MAX MUTATED 1 8 2
MAX WILD-TYPE 58 99 77
'MAX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S267.  Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
MAX MUTATED 4 3 4
MAX WILD-TYPE 74 68 87
'MAX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S268.  Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
MAX MUTATED 2 2 2 5
MAX WILD-TYPE 44 55 64 66
'MAX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S269.  Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
MAX MUTATED 2 2 1
MAX WILD-TYPE 53 33 25
'MAX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S270.  Gene #23: 'MAX MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
MAX MUTATED 2 1 2
MAX WILD-TYPE 41 45 25
'SGK1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S271.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
SGK1 MUTATED 2 1 0 0
SGK1 WILD-TYPE 10 17 11 10
'SGK1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S272.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
SGK1 MUTATED 1 0 1 1 0
SGK1 WILD-TYPE 11 10 6 6 15
'SGK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S273.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
SGK1 MUTATED 10 3 1 1 0
SGK1 WILD-TYPE 146 20 53 6 2
'SGK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S274.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SGK1 MUTATED 1 1 3
SGK1 WILD-TYPE 42 38 50
'SGK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S275.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SGK1 MUTATED 4 5 1 2 1 2
SGK1 WILD-TYPE 35 31 36 8 39 22
'SGK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S276.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SGK1 MUTATED 6 5 3 1
SGK1 WILD-TYPE 59 59 37 16
'SGK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S277.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
SGK1 MUTATED 4 8 3
SGK1 WILD-TYPE 75 77 78
'SGK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S278.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
SGK1 MUTATED 2 8 5
SGK1 WILD-TYPE 57 99 74
'SGK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S279.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
SGK1 MUTATED 7 2 5
SGK1 WILD-TYPE 71 69 86
'SGK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S280.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
SGK1 MUTATED 4 2 2 6
SGK1 WILD-TYPE 42 55 64 65
'SGK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S281.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
SGK1 MUTATED 3 1 0
SGK1 WILD-TYPE 52 34 26
'SGK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S282.  Gene #24: 'SGK1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
SGK1 MUTATED 1 2 1
SGK1 WILD-TYPE 42 44 26
'NRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S283.  Gene #25: 'NRAS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
NRAS MUTATED 7 0 1 1 0
NRAS WILD-TYPE 149 23 53 6 2
'NRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S284.  Gene #25: 'NRAS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
NRAS MUTATED 0 2 0 0 2 2
NRAS WILD-TYPE 39 34 37 10 38 22
'NRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S285.  Gene #25: 'NRAS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
NRAS MUTATED 2 2 0 2
NRAS WILD-TYPE 63 62 40 15
'NRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S286.  Gene #25: 'NRAS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
NRAS MUTATED 4 3 2
NRAS WILD-TYPE 75 82 79
'NRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S287.  Gene #25: 'NRAS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
NRAS MUTATED 2 5 2
NRAS WILD-TYPE 57 102 77
'NRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S288.  Gene #25: 'NRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
NRAS MUTATED 4 3 2
NRAS WILD-TYPE 74 68 89
'NRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S289.  Gene #25: 'NRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
NRAS MUTATED 1 3 2 3
NRAS WILD-TYPE 45 54 64 68
'KLHL8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S290.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
KLHL8 MUTATED 2 1 0 0
KLHL8 WILD-TYPE 10 17 11 10
'KLHL8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S291.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
KLHL8 MUTATED 1 0 1 1 0
KLHL8 WILD-TYPE 11 10 6 6 15
'KLHL8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0944 (Fisher's exact test), Q value = 1

Table S292.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
KLHL8 MUTATED 11 0 0 1 0
KLHL8 WILD-TYPE 145 23 54 6 2
'KLHL8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S293.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
KLHL8 MUTATED 1 1 4
KLHL8 WILD-TYPE 42 38 49
'KLHL8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S294.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
KLHL8 MUTATED 2 2 4 0 1 1
KLHL8 WILD-TYPE 37 34 33 10 39 23
'KLHL8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S295.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
KLHL8 MUTATED 2 4 3 1
KLHL8 WILD-TYPE 63 60 37 16
'KLHL8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S296.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
KLHL8 MUTATED 3 7 2
KLHL8 WILD-TYPE 76 78 79
'KLHL8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S297.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
KLHL8 MUTATED 1 9 2
KLHL8 WILD-TYPE 58 98 77
'KLHL8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S298.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
KLHL8 MUTATED 6 3 3
KLHL8 WILD-TYPE 72 68 88
'KLHL8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S299.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
KLHL8 MUTATED 2 4 1 5
KLHL8 WILD-TYPE 44 53 65 66
'KLHL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S300.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
KLHL8 MUTATED 4 1 0
KLHL8 WILD-TYPE 51 34 26
'KLHL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S301.  Gene #26: 'KLHL8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
KLHL8 MUTATED 2 2 1
KLHL8 WILD-TYPE 41 44 26
'MORC4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S302.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MORC4 MUTATED 1 3 0 1
MORC4 WILD-TYPE 11 15 11 9
'MORC4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S303.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MORC4 MUTATED 2 1 1 0 1
MORC4 WILD-TYPE 10 9 6 7 14
'MORC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S304.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
MORC4 MUTATED 16 2 1 1 0
MORC4 WILD-TYPE 140 21 53 6 2
'MORC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S305.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MORC4 MUTATED 2 5 5
MORC4 WILD-TYPE 41 34 48
'MORC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S306.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MORC4 MUTATED 6 5 1 1 4 0
MORC4 WILD-TYPE 33 31 36 9 36 24
'MORC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S307.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MORC4 MUTATED 9 5 3 0
MORC4 WILD-TYPE 56 59 37 17
'MORC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S308.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
MORC4 MUTATED 7 10 3
MORC4 WILD-TYPE 72 75 78
'MORC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0194 (Fisher's exact test), Q value = 1

Table S309.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
MORC4 MUTATED 2 15 3
MORC4 WILD-TYPE 57 92 76

Figure S84.  Get High-res Image Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MORC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 1

Table S310.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
MORC4 MUTATED 12 3 4
MORC4 WILD-TYPE 66 68 87

Figure S85.  Get High-res Image Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MORC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S311.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
MORC4 MUTATED 4 5 3 7
MORC4 WILD-TYPE 42 52 63 64
'MORC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S312.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
MORC4 MUTATED 3 2 4
MORC4 WILD-TYPE 52 33 22
'MORC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S313.  Gene #27: 'MORC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
MORC4 MUTATED 1 4 4
MORC4 WILD-TYPE 42 42 23
'ZNF781 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S314.  Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ZNF781 MUTATED 10 0 0 0 0
ZNF781 WILD-TYPE 146 23 54 7 2
'ZNF781 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S315.  Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF781 MUTATED 1 2 3
ZNF781 WILD-TYPE 42 37 50
'ZNF781 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S316.  Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF781 MUTATED 3 2 2 1 1 1
ZNF781 WILD-TYPE 36 34 35 9 39 23
'ZNF781 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S317.  Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF781 MUTATED 4 3 2 1
ZNF781 WILD-TYPE 61 61 38 16
'ZNF781 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S318.  Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ZNF781 MUTATED 3 5 2
ZNF781 WILD-TYPE 76 80 79
'ZNF781 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S319.  Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ZNF781 MUTATED 1 6 3
ZNF781 WILD-TYPE 58 101 76
'ZNF781 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S320.  Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ZNF781 MUTATED 3 2 4
ZNF781 WILD-TYPE 75 69 87
'ZNF781 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S321.  Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ZNF781 MUTATED 2 2 1 4
ZNF781 WILD-TYPE 44 55 65 67
'ZNF781 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S322.  Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ZNF781 MUTATED 4 1 1
ZNF781 WILD-TYPE 51 34 25
'ZNF781 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S323.  Gene #28: 'ZNF781 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ZNF781 MUTATED 3 1 2
ZNF781 WILD-TYPE 40 45 25
'MKI67 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 1

Table S324.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MKI67 MUTATED 6 4 0 1
MKI67 WILD-TYPE 6 14 11 9

Figure S86.  Get High-res Image Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'MKI67 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 1

Table S325.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MKI67 MUTATED 4 0 2 4 1
MKI67 WILD-TYPE 8 10 5 3 14

Figure S87.  Get High-res Image Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MKI67 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.4

Table S326.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
MKI67 MUTATED 27 0 0 2 0
MKI67 WILD-TYPE 129 23 54 5 2

Figure S88.  Get High-res Image Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MKI67 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S327.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MKI67 MUTATED 2 3 7
MKI67 WILD-TYPE 41 36 46
'MKI67 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S328.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MKI67 MUTATED 7 6 6 3 4 1
MKI67 WILD-TYPE 32 30 31 7 36 23
'MKI67 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S329.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MKI67 MUTATED 10 8 8 1
MKI67 WILD-TYPE 55 56 32 16
'MKI67 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0742 (Fisher's exact test), Q value = 1

Table S330.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
MKI67 MUTATED 9 15 5
MKI67 WILD-TYPE 70 70 76
'MKI67 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0144 (Fisher's exact test), Q value = 1

Table S331.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
MKI67 MUTATED 3 20 6
MKI67 WILD-TYPE 56 87 73

Figure S89.  Get High-res Image Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MKI67 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S332.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
MKI67 MUTATED 13 5 10
MKI67 WILD-TYPE 65 66 81
'MKI67 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S333.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
MKI67 MUTATED 3 6 5 14
MKI67 WILD-TYPE 43 51 61 57
'MKI67 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S334.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
MKI67 MUTATED 6 4 2
MKI67 WILD-TYPE 49 31 24
'MKI67 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S335.  Gene #29: 'MKI67 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
MKI67 MUTATED 4 3 5
MKI67 WILD-TYPE 39 43 22
'ING1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 1

Table S336.  Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ING1 MUTATED 11 0 0 2 0
ING1 WILD-TYPE 145 23 54 5 2

Figure S90.  Get High-res Image Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ING1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S337.  Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ING1 MUTATED 3 1 4
ING1 WILD-TYPE 40 38 49
'ING1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S338.  Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ING1 MUTATED 4 4 3 1 1 0
ING1 WILD-TYPE 35 32 34 9 39 24
'ING1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S339.  Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ING1 MUTATED 5 5 3 0
ING1 WILD-TYPE 60 59 37 17
'ING1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S340.  Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ING1 MUTATED 4 4 5
ING1 WILD-TYPE 75 81 76
'ING1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S341.  Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ING1 MUTATED 1 7 5
ING1 WILD-TYPE 58 100 74
'ING1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S342.  Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ING1 MUTATED 3 3 6
ING1 WILD-TYPE 75 68 85
'ING1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S343.  Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ING1 MUTATED 1 1 3 7
ING1 WILD-TYPE 45 56 63 64
'ING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S344.  Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ING1 MUTATED 3 1 3
ING1 WILD-TYPE 52 34 23
'ING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S345.  Gene #30: 'ING1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ING1 MUTATED 1 2 4
ING1 WILD-TYPE 42 44 23
'INTS7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S346.  Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
INTS7 MUTATED 2 1 0 0
INTS7 WILD-TYPE 10 17 11 10
'INTS7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S347.  Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
INTS7 MUTATED 1 0 1 1 0
INTS7 WILD-TYPE 11 10 6 6 15
'INTS7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S348.  Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
INTS7 MUTATED 8 0 0 0 0
INTS7 WILD-TYPE 148 23 54 7 2
'INTS7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S349.  Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
INTS7 MUTATED 1 4 0 1 2 0
INTS7 WILD-TYPE 38 32 37 9 38 24
'INTS7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S350.  Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
INTS7 MUTATED 4 3 1 0
INTS7 WILD-TYPE 61 61 39 17
'INTS7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0935 (Fisher's exact test), Q value = 1

Table S351.  Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
INTS7 MUTATED 3 5 0
INTS7 WILD-TYPE 76 80 81
'INTS7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00433 (Fisher's exact test), Q value = 1

Table S352.  Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
INTS7 MUTATED 0 8 0
INTS7 WILD-TYPE 59 99 79

Figure S91.  Get High-res Image Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'INTS7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0324 (Fisher's exact test), Q value = 1

Table S353.  Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
INTS7 MUTATED 5 2 0
INTS7 WILD-TYPE 73 69 91

Figure S92.  Get High-res Image Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'INTS7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S354.  Gene #31: 'INTS7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
INTS7 MUTATED 2 2 0 3
INTS7 WILD-TYPE 44 55 66 68
'CCDC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S355.  Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
CCDC6 MUTATED 4 0 2 0 0
CCDC6 WILD-TYPE 152 23 52 7 2
'CCDC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S356.  Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CCDC6 MUTATED 3 1 1
CCDC6 WILD-TYPE 40 38 52
'CCDC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S357.  Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CCDC6 MUTATED 2 0 1 1 0 1
CCDC6 WILD-TYPE 37 36 36 9 40 23
'CCDC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S358.  Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CCDC6 MUTATED 1 1 2 1
CCDC6 WILD-TYPE 64 63 38 16
'CCDC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S359.  Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
CCDC6 MUTATED 3 1 2
CCDC6 WILD-TYPE 76 84 79
'CCDC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S360.  Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
CCDC6 MUTATED 3 1 2
CCDC6 WILD-TYPE 56 106 77
'CCDC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0956 (Fisher's exact test), Q value = 1

Table S361.  Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
CCDC6 MUTATED 0 4 2
CCDC6 WILD-TYPE 78 67 89
'CCDC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S362.  Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
CCDC6 MUTATED 0 4 1 1
CCDC6 WILD-TYPE 46 53 65 70
'CCDC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S363.  Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
CCDC6 MUTATED 2 3 0
CCDC6 WILD-TYPE 53 32 26
'CCDC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S364.  Gene #32: 'CCDC6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
CCDC6 MUTATED 3 1 1
CCDC6 WILD-TYPE 40 45 26
'EIF2S2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S365.  Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
EIF2S2 MUTATED 9 0 0 0 0
EIF2S2 WILD-TYPE 147 23 54 7 2
'EIF2S2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S366.  Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
EIF2S2 MUTATED 1 1 3
EIF2S2 WILD-TYPE 42 38 50
'EIF2S2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S367.  Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
EIF2S2 MUTATED 2 2 1 1 2 1
EIF2S2 WILD-TYPE 37 34 36 9 38 23
'EIF2S2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S368.  Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
EIF2S2 MUTATED 3 5 1 0
EIF2S2 WILD-TYPE 62 59 39 17
'EIF2S2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S369.  Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
EIF2S2 MUTATED 3 5 1
EIF2S2 WILD-TYPE 76 80 80
'EIF2S2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S370.  Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
EIF2S2 MUTATED 2 6 1
EIF2S2 WILD-TYPE 57 101 78
'EIF2S2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S371.  Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
EIF2S2 MUTATED 4 3 2
EIF2S2 WILD-TYPE 74 68 89
'EIF2S2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S372.  Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
EIF2S2 MUTATED 2 4 1 2
EIF2S2 WILD-TYPE 44 53 65 69
'EIF2S2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S373.  Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
EIF2S2 MUTATED 2 2 0
EIF2S2 WILD-TYPE 53 33 26
'EIF2S2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S374.  Gene #33: 'EIF2S2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
EIF2S2 MUTATED 1 1 2
EIF2S2 WILD-TYPE 42 45 25
'RBBP6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S375.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
RBBP6 MUTATED 1 3 0 1
RBBP6 WILD-TYPE 11 15 11 9
'RBBP6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.021 (Fisher's exact test), Q value = 1

Table S376.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
RBBP6 MUTATED 4 0 0 1 0
RBBP6 WILD-TYPE 8 10 7 6 15

Figure S93.  Get High-res Image Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RBBP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00263 (Fisher's exact test), Q value = 1

Table S377.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
RBBP6 MUTATED 20 0 0 2 0
RBBP6 WILD-TYPE 136 23 54 5 2

Figure S94.  Get High-res Image Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RBBP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S378.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
RBBP6 MUTATED 3 3 5
RBBP6 WILD-TYPE 40 36 48
'RBBP6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S379.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RBBP6 MUTATED 4 6 4 1 4 1
RBBP6 WILD-TYPE 35 30 33 9 36 23
'RBBP6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S380.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RBBP6 MUTATED 7 8 4 1
RBBP6 WILD-TYPE 58 56 36 16
'RBBP6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0577 (Fisher's exact test), Q value = 1

Table S381.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
RBBP6 MUTATED 7 12 3
RBBP6 WILD-TYPE 72 73 78
'RBBP6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00917 (Fisher's exact test), Q value = 1

Table S382.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
RBBP6 MUTATED 1 16 5
RBBP6 WILD-TYPE 58 91 74

Figure S95.  Get High-res Image Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBBP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S383.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
RBBP6 MUTATED 9 5 7
RBBP6 WILD-TYPE 69 66 84
'RBBP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0785 (Fisher's exact test), Q value = 1

Table S384.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
RBBP6 MUTATED 4 4 2 11
RBBP6 WILD-TYPE 42 53 64 60
'RBBP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S385.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
RBBP6 MUTATED 5 2 3
RBBP6 WILD-TYPE 50 33 23
'RBBP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0289 (Fisher's exact test), Q value = 1

Table S386.  Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
RBBP6 MUTATED 2 2 6
RBBP6 WILD-TYPE 41 44 21

Figure S96.  Get High-res Image Gene #34: 'RBBP6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SOS1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S387.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
SOS1 MUTATED 1 1 2 0
SOS1 WILD-TYPE 11 17 9 10
'SOS1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S388.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
SOS1 MUTATED 1 0 1 1 1
SOS1 WILD-TYPE 11 10 6 6 14
'SOS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S389.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
SOS1 MUTATED 11 1 0 0 0
SOS1 WILD-TYPE 145 22 54 7 2
'SOS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S390.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SOS1 MUTATED 2 0 2
SOS1 WILD-TYPE 41 39 51
'SOS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S391.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SOS1 MUTATED 2 4 0 0 3 0
SOS1 WILD-TYPE 37 32 37 10 37 24
'SOS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S392.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SOS1 MUTATED 4 5 0 0
SOS1 WILD-TYPE 61 59 40 17
'SOS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S393.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
SOS1 MUTATED 4 2 4
SOS1 WILD-TYPE 75 83 77
'SOS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S394.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
SOS1 MUTATED 1 5 4
SOS1 WILD-TYPE 58 102 75
'SOS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S395.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
SOS1 MUTATED 6 1 4
SOS1 WILD-TYPE 72 70 87
'SOS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S396.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
SOS1 MUTATED 1 2 2 6
SOS1 WILD-TYPE 45 55 64 65
'SOS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S397.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
SOS1 MUTATED 2 1 1
SOS1 WILD-TYPE 53 34 25
'SOS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S398.  Gene #35: 'SOS1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
SOS1 MUTATED 1 1 2
SOS1 WILD-TYPE 42 45 25
'NAT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S399.  Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
NAT1 MUTATED 2 1 0 0
NAT1 WILD-TYPE 10 17 11 10
'NAT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0796 (Fisher's exact test), Q value = 1

Table S400.  Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
NAT1 MUTATED 1 0 0 2 0
NAT1 WILD-TYPE 11 10 7 5 15
'NAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S401.  Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
NAT1 MUTATED 6 0 0 1 0
NAT1 WILD-TYPE 150 23 54 6 2
'NAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S402.  Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
NAT1 MUTATED 0 1 3 1 0 1
NAT1 WILD-TYPE 39 35 34 9 40 23
'NAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 1

Table S403.  Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
NAT1 MUTATED 1 0 4 1
NAT1 WILD-TYPE 64 64 36 16

Figure S97.  Get High-res Image Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

'NAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S404.  Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
NAT1 MUTATED 2 4 1
NAT1 WILD-TYPE 77 81 80
'NAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S405.  Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
NAT1 MUTATED 0 5 2
NAT1 WILD-TYPE 59 102 77
'NAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S406.  Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
NAT1 MUTATED 2 2 3
NAT1 WILD-TYPE 76 69 88
'NAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S407.  Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
NAT1 MUTATED 1 1 1 4
NAT1 WILD-TYPE 45 56 65 67
'NAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S408.  Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
NAT1 MUTATED 3 0 0
NAT1 WILD-TYPE 52 35 26
'NAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0602 (Fisher's exact test), Q value = 1

Table S409.  Gene #36: 'NAT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
NAT1 MUTATED 3 0 0
NAT1 WILD-TYPE 40 46 27
'ADNP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0828 (Fisher's exact test), Q value = 1

Table S410.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ADNP MUTATED 4 1 1 0
ADNP WILD-TYPE 8 17 10 10
'ADNP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S411.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ADNP MUTATED 1 0 2 2 1
ADNP WILD-TYPE 11 10 5 5 14
'ADNP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0589 (Fisher's exact test), Q value = 1

Table S412.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ADNP MUTATED 13 0 0 1 0
ADNP WILD-TYPE 143 23 54 6 2
'ADNP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S413.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ADNP MUTATED 2 1 3
ADNP WILD-TYPE 41 38 50
'ADNP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S414.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ADNP MUTATED 4 3 2 2 2 1
ADNP WILD-TYPE 35 33 35 8 38 23
'ADNP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S415.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ADNP MUTATED 3 6 4 1
ADNP WILD-TYPE 62 58 36 16
'ADNP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S416.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ADNP MUTATED 4 7 3
ADNP WILD-TYPE 75 78 78
'ADNP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S417.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ADNP MUTATED 1 9 4
ADNP WILD-TYPE 58 98 75
'ADNP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S418.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ADNP MUTATED 6 3 5
ADNP WILD-TYPE 72 68 86
'ADNP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S419.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ADNP MUTATED 3 3 3 5
ADNP WILD-TYPE 43 54 63 66
'ADNP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S420.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ADNP MUTATED 2 2 1
ADNP WILD-TYPE 53 33 25
'ADNP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0416 (Fisher's exact test), Q value = 1

Table S421.  Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ADNP MUTATED 2 0 3
ADNP WILD-TYPE 41 46 24

Figure S98.  Get High-res Image Gene #37: 'ADNP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'VPS11 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S422.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
VPS11 MUTATED 2 1 0 0
VPS11 WILD-TYPE 10 17 11 10
'VPS11 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S423.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
VPS11 MUTATED 1 0 1 1 0
VPS11 WILD-TYPE 11 10 6 6 15
'VPS11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0807 (Fisher's exact test), Q value = 1

Table S424.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
VPS11 MUTATED 9 0 1 2 0
VPS11 WILD-TYPE 147 23 53 5 2
'VPS11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S425.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
VPS11 MUTATED 2 1 2
VPS11 WILD-TYPE 41 38 51
'VPS11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S426.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
VPS11 MUTATED 3 2 2 2 1 0
VPS11 WILD-TYPE 36 34 35 8 39 24
'VPS11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S427.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
VPS11 MUTATED 4 2 4 0
VPS11 WILD-TYPE 61 62 36 17
'VPS11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S428.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
VPS11 MUTATED 4 6 2
VPS11 WILD-TYPE 75 79 79
'VPS11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S429.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
VPS11 MUTATED 2 8 2
VPS11 WILD-TYPE 57 99 77
'VPS11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S430.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
VPS11 MUTATED 4 5 3
VPS11 WILD-TYPE 74 66 88
'VPS11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0427 (Fisher's exact test), Q value = 1

Table S431.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
VPS11 MUTATED 0 5 1 6
VPS11 WILD-TYPE 46 52 65 65

Figure S99.  Get High-res Image Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'VPS11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S432.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
VPS11 MUTATED 1 2 0
VPS11 WILD-TYPE 54 33 26
'VPS11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0611 (Fisher's exact test), Q value = 1

Table S433.  Gene #38: 'VPS11 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
VPS11 MUTATED 3 0 0
VPS11 WILD-TYPE 40 46 27
'L1TD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 1

Table S434.  Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
L1TD1 MUTATED 14 0 0 2 0
L1TD1 WILD-TYPE 142 23 54 5 2

Figure S100.  Get High-res Image Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'L1TD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S435.  Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
L1TD1 MUTATED 2 1 7
L1TD1 WILD-TYPE 41 38 46
'L1TD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0744 (Fisher's exact test), Q value = 1

Table S436.  Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
L1TD1 MUTATED 3 5 2 2 0 1
L1TD1 WILD-TYPE 36 31 35 8 40 23
'L1TD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S437.  Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
L1TD1 MUTATED 4 5 3 1
L1TD1 WILD-TYPE 61 59 37 16
'L1TD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S438.  Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
L1TD1 MUTATED 7 6 3
L1TD1 WILD-TYPE 72 79 78
'L1TD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0935 (Fisher's exact test), Q value = 1

Table S439.  Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
L1TD1 MUTATED 1 11 4
L1TD1 WILD-TYPE 58 96 75
'L1TD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S440.  Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
L1TD1 MUTATED 6 4 5
L1TD1 WILD-TYPE 72 67 86
'L1TD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S441.  Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
L1TD1 MUTATED 3 3 2 7
L1TD1 WILD-TYPE 43 54 64 64
'L1TD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S442.  Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
L1TD1 MUTATED 5 2 1
L1TD1 WILD-TYPE 50 33 25
'L1TD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S443.  Gene #39: 'L1TD1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
L1TD1 MUTATED 2 2 4
L1TD1 WILD-TYPE 41 44 23
'MARK3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S444.  Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MARK3 MUTATED 3 1 0 0
MARK3 WILD-TYPE 9 17 11 10
'MARK3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.091 (Fisher's exact test), Q value = 1

Table S445.  Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MARK3 MUTATED 1 0 2 1 0
MARK3 WILD-TYPE 11 10 5 6 15
'MARK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0246 (Fisher's exact test), Q value = 1

Table S446.  Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
MARK3 MUTATED 9 0 0 2 0
MARK3 WILD-TYPE 147 23 54 5 2

Figure S101.  Get High-res Image Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MARK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0376 (Fisher's exact test), Q value = 1

Table S447.  Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MARK3 MUTATED 0 0 4
MARK3 WILD-TYPE 43 39 49

Figure S102.  Get High-res Image Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MARK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0405 (Fisher's exact test), Q value = 1

Table S448.  Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MARK3 MUTATED 1 6 1 1 1 0
MARK3 WILD-TYPE 38 30 36 9 39 24

Figure S103.  Get High-res Image Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MARK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S449.  Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MARK3 MUTATED 5 4 1 0
MARK3 WILD-TYPE 60 60 39 17
'MARK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S450.  Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
MARK3 MUTATED 4 5 2
MARK3 WILD-TYPE 75 80 79
'MARK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0635 (Fisher's exact test), Q value = 1

Table S451.  Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
MARK3 MUTATED 0 8 3
MARK3 WILD-TYPE 59 99 76
'MARK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S452.  Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
MARK3 MUTATED 6 2 2
MARK3 WILD-TYPE 72 69 89
'MARK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00427 (Fisher's exact test), Q value = 1

Table S453.  Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
MARK3 MUTATED 1 1 0 8
MARK3 WILD-TYPE 45 56 66 63

Figure S104.  Get High-res Image Gene #40: 'MARK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CTNND1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S454.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CTNND1 MUTATED 3 1 1 0
CTNND1 WILD-TYPE 9 17 10 10
'CTNND1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S455.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CTNND1 MUTATED 1 0 2 1 1
CTNND1 WILD-TYPE 11 10 5 6 14
'CTNND1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 1

Table S456.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
CTNND1 MUTATED 16 0 1 2 0
CTNND1 WILD-TYPE 140 23 53 5 2

Figure S105.  Get High-res Image Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CTNND1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S457.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CTNND1 MUTATED 3 2 4
CTNND1 WILD-TYPE 40 37 49
'CTNND1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 1

Table S458.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CTNND1 MUTATED 3 4 1 4 4 0
CTNND1 WILD-TYPE 36 32 36 6 36 24

Figure S106.  Get High-res Image Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'CTNND1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S459.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CTNND1 MUTATED 6 6 4 0
CTNND1 WILD-TYPE 59 58 36 17
'CTNND1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S460.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
CTNND1 MUTATED 8 5 6
CTNND1 WILD-TYPE 71 80 75
'CTNND1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S461.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
CTNND1 MUTATED 2 11 6
CTNND1 WILD-TYPE 57 96 73
'CTNND1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S462.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
CTNND1 MUTATED 5 6 7
CTNND1 WILD-TYPE 73 65 84
'CTNND1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.09 (Fisher's exact test), Q value = 1

Table S463.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
CTNND1 MUTATED 1 4 3 10
CTNND1 WILD-TYPE 45 53 63 61
'CTNND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S464.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
CTNND1 MUTATED 2 3 3
CTNND1 WILD-TYPE 53 32 23
'CTNND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S465.  Gene #41: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
CTNND1 MUTATED 3 2 3
CTNND1 WILD-TYPE 40 44 24
'GFAP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0294 (Fisher's exact test), Q value = 1

Table S466.  Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
GFAP MUTATED 7 0 0 2 0
GFAP WILD-TYPE 149 23 54 5 2

Figure S107.  Get High-res Image Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'GFAP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S467.  Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
GFAP MUTATED 2 0 3
GFAP WILD-TYPE 41 39 50
'GFAP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S468.  Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
GFAP MUTATED 4 2 1 0 0 1
GFAP WILD-TYPE 35 34 36 10 40 23
'GFAP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S469.  Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
GFAP MUTATED 2 4 1 1
GFAP WILD-TYPE 63 60 39 16
'GFAP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0697 (Fisher's exact test), Q value = 1

Table S470.  Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
GFAP MUTATED 4 5 0
GFAP WILD-TYPE 75 80 81
'GFAP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S471.  Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
GFAP MUTATED 1 6 2
GFAP WILD-TYPE 58 101 77
'GFAP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S472.  Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
GFAP MUTATED 5 2 2
GFAP WILD-TYPE 73 69 89
'GFAP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0377 (Fisher's exact test), Q value = 1

Table S473.  Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
GFAP MUTATED 2 1 0 6
GFAP WILD-TYPE 44 56 66 65

Figure S108.  Get High-res Image Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GFAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S474.  Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
GFAP MUTATED 1 1 1
GFAP WILD-TYPE 54 34 25
'GFAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S475.  Gene #42: 'GFAP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
GFAP MUTATED 1 0 2
GFAP WILD-TYPE 42 46 25
'PPP2R1A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0755 (Fisher's exact test), Q value = 1

Table S476.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
PPP2R1A MUTATED 3 5 0 0
PPP2R1A WILD-TYPE 9 13 11 10
'PPP2R1A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0567 (Fisher's exact test), Q value = 1

Table S477.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
PPP2R1A MUTATED 4 2 0 2 0
PPP2R1A WILD-TYPE 8 8 7 5 15
'PPP2R1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.043 (Fisher's exact test), Q value = 1

Table S478.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
PPP2R1A MUTATED 11 2 12 0 0
PPP2R1A WILD-TYPE 145 21 42 7 2

Figure S109.  Get High-res Image Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PPP2R1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 1

Table S479.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PPP2R1A MUTATED 10 1 5
PPP2R1A WILD-TYPE 33 38 48

Figure S110.  Get High-res Image Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'PPP2R1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S480.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PPP2R1A MUTATED 3 7 2 0 2 4
PPP2R1A WILD-TYPE 36 29 35 10 38 20
'PPP2R1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S481.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PPP2R1A MUTATED 8 5 4 1
PPP2R1A WILD-TYPE 57 59 36 16
'PPP2R1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00223 (Fisher's exact test), Q value = 1

Table S482.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
PPP2R1A MUTATED 17 6 4
PPP2R1A WILD-TYPE 62 79 77

Figure S111.  Get High-res Image Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'PPP2R1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00222 (Fisher's exact test), Q value = 1

Table S483.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
PPP2R1A MUTATED 14 9 4
PPP2R1A WILD-TYPE 45 98 75

Figure S112.  Get High-res Image Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PPP2R1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0144 (Fisher's exact test), Q value = 1

Table S484.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
PPP2R1A MUTATED 6 14 5
PPP2R1A WILD-TYPE 72 57 86

Figure S113.  Get High-res Image Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'PPP2R1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00081 (Fisher's exact test), Q value = 1

Table S485.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
PPP2R1A MUTATED 2 14 2 7
PPP2R1A WILD-TYPE 44 43 64 64

Figure S114.  Get High-res Image Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PPP2R1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0947 (Fisher's exact test), Q value = 1

Table S486.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
PPP2R1A MUTATED 4 8 4
PPP2R1A WILD-TYPE 51 27 22
'PPP2R1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S487.  Gene #43: 'PPP2R1A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
PPP2R1A MUTATED 7 3 6
PPP2R1A WILD-TYPE 36 43 21
'C9ORF102 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S488.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
C9ORF102 MUTATED 2 2 0 0
C9ORF102 WILD-TYPE 10 16 11 10
'C9ORF102 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S489.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
C9ORF102 MUTATED 2 0 1 1 0
C9ORF102 WILD-TYPE 10 10 6 6 15
'C9ORF102 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 1

Table S490.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
C9ORF102 MUTATED 14 0 0 2 0
C9ORF102 WILD-TYPE 142 23 54 5 2

Figure S115.  Get High-res Image Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C9ORF102 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S491.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
C9ORF102 MUTATED 2 1 4
C9ORF102 WILD-TYPE 41 38 49
'C9ORF102 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S492.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
C9ORF102 MUTATED 4 4 2 1 2 1
C9ORF102 WILD-TYPE 35 32 35 9 38 23
'C9ORF102 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S493.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
C9ORF102 MUTATED 4 6 3 1
C9ORF102 WILD-TYPE 61 58 37 16
'C9ORF102 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S494.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
C9ORF102 MUTATED 6 8 2
C9ORF102 WILD-TYPE 73 77 79
'C9ORF102 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0394 (Fisher's exact test), Q value = 1

Table S495.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
C9ORF102 MUTATED 1 12 3
C9ORF102 WILD-TYPE 58 95 76

Figure S116.  Get High-res Image Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'C9ORF102 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0904 (Fisher's exact test), Q value = 1

Table S496.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
C9ORF102 MUTATED 9 3 3
C9ORF102 WILD-TYPE 69 68 88
'C9ORF102 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S497.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
C9ORF102 MUTATED 3 4 1 7
C9ORF102 WILD-TYPE 43 53 65 64
'C9ORF102 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S498.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
C9ORF102 MUTATED 3 1 1
C9ORF102 WILD-TYPE 52 34 25
'C9ORF102 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S499.  Gene #44: 'C9ORF102 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
C9ORF102 MUTATED 2 1 2
C9ORF102 WILD-TYPE 41 45 25
'EIF4A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S500.  Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
EIF4A2 MUTATED 6 0 0 1 0
EIF4A2 WILD-TYPE 150 23 54 6 2
'EIF4A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S501.  Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
EIF4A2 MUTATED 1 0 2
EIF4A2 WILD-TYPE 42 39 51
'EIF4A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S502.  Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
EIF4A2 MUTATED 2 1 1 1 2 0
EIF4A2 WILD-TYPE 37 35 36 9 38 24
'EIF4A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S503.  Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
EIF4A2 MUTATED 1 4 2 0
EIF4A2 WILD-TYPE 64 60 38 17
'EIF4A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0637 (Fisher's exact test), Q value = 1

Table S504.  Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
EIF4A2 MUTATED 2 5 0
EIF4A2 WILD-TYPE 77 80 81
'EIF4A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0509 (Fisher's exact test), Q value = 1

Table S505.  Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
EIF4A2 MUTATED 1 6 0
EIF4A2 WILD-TYPE 58 101 79
'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 1

Table S506.  Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
EIF4A2 MUTATED 5 2 0
EIF4A2 WILD-TYPE 73 69 91

Figure S117.  Get High-res Image Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S507.  Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
EIF4A2 MUTATED 2 3 0 2
EIF4A2 WILD-TYPE 44 54 66 69
'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S508.  Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
EIF4A2 MUTATED 1 2 0
EIF4A2 WILD-TYPE 54 33 26
'EIF4A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S509.  Gene #45: 'EIF4A2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
EIF4A2 MUTATED 1 0 2
EIF4A2 WILD-TYPE 42 46 25
'ZNF471 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S510.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZNF471 MUTATED 2 1 1 0
ZNF471 WILD-TYPE 10 17 10 10
'ZNF471 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0914 (Fisher's exact test), Q value = 1

Table S511.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZNF471 MUTATED 1 0 2 1 0
ZNF471 WILD-TYPE 11 10 5 6 15
'ZNF471 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0454 (Fisher's exact test), Q value = 1

Table S512.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ZNF471 MUTATED 14 0 0 1 0
ZNF471 WILD-TYPE 142 23 54 6 2

Figure S118.  Get High-res Image Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF471 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S513.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF471 MUTATED 1 2 4
ZNF471 WILD-TYPE 42 37 49
'ZNF471 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S514.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF471 MUTATED 4 4 2 1 1 1
ZNF471 WILD-TYPE 35 32 35 9 39 23
'ZNF471 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S515.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF471 MUTATED 6 3 3 1
ZNF471 WILD-TYPE 59 61 37 16
'ZNF471 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S516.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ZNF471 MUTATED 5 7 3
ZNF471 WILD-TYPE 74 78 78
'ZNF471 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 1

Table S517.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ZNF471 MUTATED 0 11 4
ZNF471 WILD-TYPE 59 96 75

Figure S119.  Get High-res Image Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF471 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S518.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ZNF471 MUTATED 8 3 3
ZNF471 WILD-TYPE 70 68 88
'ZNF471 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0855 (Fisher's exact test), Q value = 1

Table S519.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ZNF471 MUTATED 3 2 1 8
ZNF471 WILD-TYPE 43 55 65 63
'ZNF471 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S520.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ZNF471 MUTATED 4 1 1
ZNF471 WILD-TYPE 51 34 25
'ZNF471 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S521.  Gene #46: 'ZNF471 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ZNF471 MUTATED 3 1 2
ZNF471 WILD-TYPE 40 45 25
'CDK17 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0462 (Fisher's exact test), Q value = 1

Table S522.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CDK17 MUTATED 3 0 2 0
CDK17 WILD-TYPE 9 18 9 10

Figure S120.  Get High-res Image Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'CDK17 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00259 (Fisher's exact test), Q value = 1

Table S523.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CDK17 MUTATED 0 0 3 2 0
CDK17 WILD-TYPE 12 10 4 5 15

Figure S121.  Get High-res Image Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CDK17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 1

Table S524.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
CDK17 MUTATED 11 0 1 2 0
CDK17 WILD-TYPE 145 23 53 5 2
'CDK17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0604 (Fisher's exact test), Q value = 1

Table S525.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CDK17 MUTATED 0 1 5
CDK17 WILD-TYPE 43 38 48
'CDK17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S526.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CDK17 MUTATED 4 1 3 0 2 1
CDK17 WILD-TYPE 35 35 34 10 38 23
'CDK17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S527.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CDK17 MUTATED 4 4 3 0
CDK17 WILD-TYPE 61 60 37 17
'CDK17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S528.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
CDK17 MUTATED 5 4 4
CDK17 WILD-TYPE 74 81 77
'CDK17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S529.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
CDK17 MUTATED 3 6 4
CDK17 WILD-TYPE 56 101 75
'CDK17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S530.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
CDK17 MUTATED 6 4 4
CDK17 WILD-TYPE 72 67 87
'CDK17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0354 (Fisher's exact test), Q value = 1

Table S531.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
CDK17 MUTATED 1 3 1 9
CDK17 WILD-TYPE 45 54 65 62

Figure S122.  Get High-res Image Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'CDK17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S532.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
CDK17 MUTATED 3 2 1
CDK17 WILD-TYPE 52 33 25
'CDK17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S533.  Gene #47: 'CDK17 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
CDK17 MUTATED 3 1 2
CDK17 WILD-TYPE 40 45 25
'SIN3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 1

Table S534.  Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
SIN3A MUTATED 16 2 0 2 0
SIN3A WILD-TYPE 140 21 54 5 2

Figure S123.  Get High-res Image Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SIN3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S535.  Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SIN3A MUTATED 4 2 8
SIN3A WILD-TYPE 39 37 45
'SIN3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00415 (Fisher's exact test), Q value = 1

Table S536.  Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SIN3A MUTATED 3 9 3 2 0 1
SIN3A WILD-TYPE 36 27 34 8 40 23

Figure S124.  Get High-res Image Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SIN3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S537.  Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SIN3A MUTATED 7 4 6 1
SIN3A WILD-TYPE 58 60 34 16
'SIN3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 1

Table S538.  Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
SIN3A MUTATED 7 12 2
SIN3A WILD-TYPE 72 73 79

Figure S125.  Get High-res Image Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'SIN3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00143 (Fisher's exact test), Q value = 1

Table S539.  Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
SIN3A MUTATED 1 17 3
SIN3A WILD-TYPE 58 90 76

Figure S126.  Get High-res Image Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SIN3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0313 (Fisher's exact test), Q value = 1

Table S540.  Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
SIN3A MUTATED 11 7 3
SIN3A WILD-TYPE 67 64 88

Figure S127.  Get High-res Image Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SIN3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00517 (Fisher's exact test), Q value = 1

Table S541.  Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
SIN3A MUTATED 3 4 1 13
SIN3A WILD-TYPE 43 53 65 58

Figure S128.  Get High-res Image Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SIN3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S542.  Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
SIN3A MUTATED 3 4 3
SIN3A WILD-TYPE 52 31 23
'SIN3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S543.  Gene #48: 'SIN3A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
SIN3A MUTATED 4 2 4
SIN3A WILD-TYPE 39 44 23
'ZNF485 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S544.  Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZNF485 MUTATED 1 1 1 0
ZNF485 WILD-TYPE 11 17 10 10
'ZNF485 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0792 (Fisher's exact test), Q value = 1

Table S545.  Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZNF485 MUTATED 1 0 2 0 0
ZNF485 WILD-TYPE 11 10 5 7 15
'ZNF485 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S546.  Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ZNF485 MUTATED 9 0 0 0 0
ZNF485 WILD-TYPE 147 23 54 7 2
'ZNF485 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S547.  Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF485 MUTATED 1 1 2
ZNF485 WILD-TYPE 42 38 51
'ZNF485 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S548.  Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF485 MUTATED 2 3 0 1 1 1
ZNF485 WILD-TYPE 37 33 37 9 39 23
'ZNF485 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S549.  Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF485 MUTATED 4 2 1 1
ZNF485 WILD-TYPE 61 62 39 16
'ZNF485 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S550.  Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ZNF485 MUTATED 4 3 2
ZNF485 WILD-TYPE 75 82 79
'ZNF485 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S551.  Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ZNF485 MUTATED 2 4 3
ZNF485 WILD-TYPE 57 103 76
'ZNF485 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S552.  Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ZNF485 MUTATED 5 2 2
ZNF485 WILD-TYPE 73 69 89
'ZNF485 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S553.  Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ZNF485 MUTATED 2 3 1 3
ZNF485 WILD-TYPE 44 54 65 68
'ZNF485 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S554.  Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ZNF485 MUTATED 1 2 0
ZNF485 WILD-TYPE 54 33 26
'ZNF485 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S555.  Gene #49: 'ZNF485 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ZNF485 MUTATED 2 0 1
ZNF485 WILD-TYPE 41 46 26
'RSBN1L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S556.  Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
RSBN1L MUTATED 3 1 0 0
RSBN1L WILD-TYPE 9 17 11 10
'RSBN1L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0925 (Fisher's exact test), Q value = 1

Table S557.  Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
RSBN1L MUTATED 1 0 1 2 0
RSBN1L WILD-TYPE 11 10 6 5 15
'RSBN1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0826 (Fisher's exact test), Q value = 1

Table S558.  Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
RSBN1L MUTATED 9 0 1 2 0
RSBN1L WILD-TYPE 147 23 53 5 2
'RSBN1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S559.  Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
RSBN1L MUTATED 2 0 2
RSBN1L WILD-TYPE 41 39 51
'RSBN1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00692 (Fisher's exact test), Q value = 1

Table S560.  Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RSBN1L MUTATED 4 3 0 3 1 0
RSBN1L WILD-TYPE 35 33 37 7 39 24

Figure S129.  Get High-res Image Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'RSBN1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S561.  Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RSBN1L MUTATED 5 3 3 0
RSBN1L WILD-TYPE 60 61 37 17
'RSBN1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S562.  Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
RSBN1L MUTATED 6 4 2
RSBN1L WILD-TYPE 73 81 79
'RSBN1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S563.  Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
RSBN1L MUTATED 1 9 2
RSBN1L WILD-TYPE 58 98 77
'RSBN1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S564.  Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
RSBN1L MUTATED 5 4 2
RSBN1L WILD-TYPE 73 67 89
'RSBN1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S565.  Gene #50: 'RSBN1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
RSBN1L MUTATED 1 3 2 5
RSBN1L WILD-TYPE 45 54 64 66
'CUX1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S566.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CUX1 MUTATED 1 2 0 1
CUX1 WILD-TYPE 11 16 11 9
'CUX1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S567.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CUX1 MUTATED 2 0 0 1 1
CUX1 WILD-TYPE 10 10 7 6 14
'CUX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00661 (Fisher's exact test), Q value = 1

Table S568.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
CUX1 MUTATED 20 1 0 2 0
CUX1 WILD-TYPE 136 22 54 5 2

Figure S130.  Get High-res Image Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CUX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S569.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CUX1 MUTATED 3 2 8
CUX1 WILD-TYPE 40 37 45
'CUX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S570.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CUX1 MUTATED 4 4 4 1 5 1
CUX1 WILD-TYPE 35 32 33 9 35 23
'CUX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S571.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CUX1 MUTATED 4 7 7 1
CUX1 WILD-TYPE 61 57 33 16
'CUX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S572.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
CUX1 MUTATED 7 11 5
CUX1 WILD-TYPE 72 74 76
'CUX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S573.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
CUX1 MUTATED 3 14 6
CUX1 WILD-TYPE 56 93 73
'CUX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S574.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
CUX1 MUTATED 8 6 7
CUX1 WILD-TYPE 70 65 84
'CUX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S575.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
CUX1 MUTATED 3 5 4 9
CUX1 WILD-TYPE 43 52 62 62
'CUX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S576.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
CUX1 MUTATED 5 3 3
CUX1 WILD-TYPE 50 32 23
'CUX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S577.  Gene #51: 'CUX1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
CUX1 MUTATED 5 3 3
CUX1 WILD-TYPE 38 43 24
'BCOR MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S578.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
BCOR MUTATED 1 2 0 0
BCOR WILD-TYPE 11 16 11 10
'BCOR MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S579.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
BCOR MUTATED 2 0 0 1 0
BCOR WILD-TYPE 10 10 7 6 15
'BCOR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.86

Table S580.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
BCOR MUTATED 25 1 0 3 0
BCOR WILD-TYPE 131 22 54 4 2

Figure S131.  Get High-res Image Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BCOR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 1

Table S581.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
BCOR MUTATED 1 3 11
BCOR WILD-TYPE 42 36 42

Figure S132.  Get High-res Image Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'BCOR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S582.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
BCOR MUTATED 5 6 3 3 5 2
BCOR WILD-TYPE 34 30 34 7 35 22
'BCOR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S583.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
BCOR MUTATED 9 6 7 2
BCOR WILD-TYPE 56 58 33 15
'BCOR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 1

Table S584.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
BCOR MUTATED 6 17 7
BCOR WILD-TYPE 73 68 74

Figure S133.  Get High-res Image Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'BCOR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00504 (Fisher's exact test), Q value = 1

Table S585.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
BCOR MUTATED 2 21 7
BCOR WILD-TYPE 57 86 72

Figure S134.  Get High-res Image Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'BCOR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S586.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
BCOR MUTATED 11 9 9
BCOR WILD-TYPE 67 62 82
'BCOR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S587.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
BCOR MUTATED 7 6 5 11
BCOR WILD-TYPE 39 51 61 60
'BCOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S588.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
BCOR MUTATED 7 3 3
BCOR WILD-TYPE 48 32 23
'BCOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0272 (Fisher's exact test), Q value = 1

Table S589.  Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
BCOR MUTATED 2 4 7
BCOR WILD-TYPE 41 42 20

Figure S135.  Get High-res Image Gene #52: 'BCOR MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'WDR45 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S590.  Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
WDR45 MUTATED 9 0 1 1 0
WDR45 WILD-TYPE 147 23 53 6 2
'WDR45 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S591.  Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
WDR45 MUTATED 1 3 2
WDR45 WILD-TYPE 42 36 51
'WDR45 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0376 (Fisher's exact test), Q value = 1

Table S592.  Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
WDR45 MUTATED 4 3 0 2 1 0
WDR45 WILD-TYPE 35 33 37 8 39 24

Figure S136.  Get High-res Image Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'WDR45 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S593.  Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
WDR45 MUTATED 3 5 2 0
WDR45 WILD-TYPE 62 59 38 17
'WDR45 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S594.  Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
WDR45 MUTATED 4 3 4
WDR45 WILD-TYPE 75 82 77
'WDR45 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S595.  Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
WDR45 MUTATED 1 6 4
WDR45 WILD-TYPE 58 101 75
'WDR45 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S596.  Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
WDR45 MUTATED 6 1 4
WDR45 WILD-TYPE 72 70 87
'WDR45 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S597.  Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
WDR45 MUTATED 0 1 4 6
WDR45 WILD-TYPE 46 56 62 65
'WDR45 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S598.  Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
WDR45 MUTATED 2 0 2
WDR45 WILD-TYPE 53 35 24
'WDR45 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S599.  Gene #53: 'WDR45 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
WDR45 MUTATED 1 2 1
WDR45 WILD-TYPE 42 44 26
'CAB39L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S600.  Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
CAB39L MUTATED 7 0 0 1 0
CAB39L WILD-TYPE 149 23 54 6 2
'CAB39L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0954 (Fisher's exact test), Q value = 1

Table S601.  Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CAB39L MUTATED 0 2 0 1 3 0
CAB39L WILD-TYPE 39 34 37 9 37 24
'CAB39L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S602.  Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CAB39L MUTATED 3 1 2 0
CAB39L WILD-TYPE 62 63 38 17
'CAB39L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S603.  Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
CAB39L MUTATED 2 4 2
CAB39L WILD-TYPE 77 81 79
'CAB39L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0472 (Fisher's exact test), Q value = 1

Table S604.  Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
CAB39L MUTATED 0 7 1
CAB39L WILD-TYPE 59 100 78

Figure S137.  Get High-res Image Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'CAB39L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S605.  Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
CAB39L MUTATED 5 2 1
CAB39L WILD-TYPE 73 69 90
'CAB39L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S606.  Gene #54: 'CAB39L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
CAB39L MUTATED 3 2 0 3
CAB39L WILD-TYPE 43 55 66 68
'TAB3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S607.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
TAB3 MUTATED 3 1 0 0
TAB3 WILD-TYPE 9 17 11 10
'TAB3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0924 (Fisher's exact test), Q value = 1

Table S608.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
TAB3 MUTATED 1 0 1 2 0
TAB3 WILD-TYPE 11 10 6 5 15
'TAB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 1

Table S609.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
TAB3 MUTATED 17 0 0 1 0
TAB3 WILD-TYPE 139 23 54 6 2

Figure S138.  Get High-res Image Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TAB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S610.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
TAB3 MUTATED 2 2 7
TAB3 WILD-TYPE 41 37 46
'TAB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S611.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TAB3 MUTATED 4 2 3 1 1 1
TAB3 WILD-TYPE 35 34 34 9 39 23
'TAB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S612.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TAB3 MUTATED 2 5 4 1
TAB3 WILD-TYPE 63 59 36 16
'TAB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0598 (Fisher's exact test), Q value = 1

Table S613.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
TAB3 MUTATED 4 11 3
TAB3 WILD-TYPE 75 74 78
'TAB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0336 (Fisher's exact test), Q value = 1

Table S614.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
TAB3 MUTATED 1 13 4
TAB3 WILD-TYPE 58 94 75

Figure S139.  Get High-res Image Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'TAB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S615.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
TAB3 MUTATED 7 3 8
TAB3 WILD-TYPE 71 68 83
'TAB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S616.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
TAB3 MUTATED 3 4 2 9
TAB3 WILD-TYPE 43 53 64 62
'TAB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S617.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
TAB3 MUTATED 4 1 2
TAB3 WILD-TYPE 51 34 24
'TAB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S618.  Gene #55: 'TAB3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
TAB3 MUTATED 2 2 3
TAB3 WILD-TYPE 41 44 24
'OAZ3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 1

Table S619.  Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
OAZ3 MUTATED 5 0 1 2 0
OAZ3 WILD-TYPE 151 23 53 5 2
'OAZ3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S620.  Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
OAZ3 MUTATED 2 0 2
OAZ3 WILD-TYPE 41 39 51
'OAZ3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S621.  Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
OAZ3 MUTATED 3 2 0 0 1 0
OAZ3 WILD-TYPE 36 34 37 10 39 24
'OAZ3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S622.  Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
OAZ3 MUTATED 2 4 0 0
OAZ3 WILD-TYPE 63 60 40 17
'OAZ3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 1

Table S623.  Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
OAZ3 MUTATED 5 3 0
OAZ3 WILD-TYPE 74 82 81
'OAZ3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0228 (Fisher's exact test), Q value = 1

Table S624.  Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
OAZ3 MUTATED 1 7 0
OAZ3 WILD-TYPE 58 100 79

Figure S140.  Get High-res Image Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'OAZ3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S625.  Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
OAZ3 MUTATED 5 2 1
OAZ3 WILD-TYPE 73 69 90
'OAZ3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S626.  Gene #56: 'OAZ3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
OAZ3 MUTATED 1 2 0 5
OAZ3 WILD-TYPE 45 55 66 66
'AHCYL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S627.  Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
AHCYL1 MUTATED 5 0 0 1 0
AHCYL1 WILD-TYPE 151 23 54 6 2
'AHCYL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S628.  Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
AHCYL1 MUTATED 1 1 1
AHCYL1 WILD-TYPE 42 38 52
'AHCYL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S629.  Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
AHCYL1 MUTATED 3 0 1 0 1 0
AHCYL1 WILD-TYPE 36 36 36 10 39 24
'AHCYL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S630.  Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
AHCYL1 MUTATED 1 3 1 0
AHCYL1 WILD-TYPE 64 61 39 17
'AHCYL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S631.  Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
AHCYL1 MUTATED 2 2 2
AHCYL1 WILD-TYPE 77 83 79
'AHCYL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S632.  Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
AHCYL1 MUTATED 0 4 2
AHCYL1 WILD-TYPE 59 103 77
'AHCYL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S633.  Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
AHCYL1 MUTATED 3 1 2
AHCYL1 WILD-TYPE 75 70 89
'AHCYL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S634.  Gene #57: 'AHCYL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
AHCYL1 MUTATED 1 0 1 4
AHCYL1 WILD-TYPE 45 57 65 67
'ATM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 1

Table S635.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ATM MUTATED 6 2 1 0
ATM WILD-TYPE 6 16 10 10

Figure S141.  Get High-res Image Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ATM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00031 (Fisher's exact test), Q value = 0.65

Table S636.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ATM MUTATED 2 0 2 5 0
ATM WILD-TYPE 10 10 5 2 15

Figure S142.  Get High-res Image Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.53

Table S637.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ATM MUTATED 22 1 0 3 1
ATM WILD-TYPE 134 22 54 4 1

Figure S143.  Get High-res Image Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S638.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ATM MUTATED 4 2 6
ATM WILD-TYPE 39 37 47
'ATM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S639.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ATM MUTATED 6 5 5 3 5 0
ATM WILD-TYPE 33 31 32 7 35 24
'ATM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S640.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ATM MUTATED 8 9 7 0
ATM WILD-TYPE 57 55 33 17
'ATM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S641.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ATM MUTATED 11 9 8
ATM WILD-TYPE 68 76 73
'ATM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0816 (Fisher's exact test), Q value = 1

Table S642.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ATM MUTATED 4 18 6
ATM WILD-TYPE 55 89 73
'ATM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S643.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ATM MUTATED 12 8 8
ATM WILD-TYPE 66 63 83
'ATM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0183 (Fisher's exact test), Q value = 1

Table S644.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ATM MUTATED 2 7 4 15
ATM WILD-TYPE 44 50 62 56

Figure S144.  Get High-res Image Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S645.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ATM MUTATED 6 4 2
ATM WILD-TYPE 49 31 24
'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S646.  Gene #58: 'ATM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ATM MUTATED 7 3 2
ATM WILD-TYPE 36 43 25
'MSH4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S647.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MSH4 MUTATED 2 1 1 0
MSH4 WILD-TYPE 10 17 10 10
'MSH4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0916 (Fisher's exact test), Q value = 1

Table S648.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MSH4 MUTATED 1 0 2 1 0
MSH4 WILD-TYPE 11 10 5 6 15
'MSH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 1

Table S649.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
MSH4 MUTATED 13 0 0 2 0
MSH4 WILD-TYPE 143 23 54 5 2

Figure S145.  Get High-res Image Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MSH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S650.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MSH4 MUTATED 2 1 3
MSH4 WILD-TYPE 41 38 50
'MSH4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S651.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MSH4 MUTATED 4 3 1 2 2 1
MSH4 WILD-TYPE 35 33 36 8 38 23
'MSH4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S652.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MSH4 MUTATED 3 5 4 1
MSH4 WILD-TYPE 62 59 36 16
'MSH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S653.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
MSH4 MUTATED 5 6 4
MSH4 WILD-TYPE 74 79 77
'MSH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S654.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
MSH4 MUTATED 1 9 5
MSH4 WILD-TYPE 58 98 74
'MSH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S655.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
MSH4 MUTATED 7 3 4
MSH4 WILD-TYPE 71 68 87
'MSH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S656.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
MSH4 MUTATED 3 2 2 7
MSH4 WILD-TYPE 43 55 64 64
'MSH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S657.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
MSH4 MUTATED 3 1 1
MSH4 WILD-TYPE 52 34 25
'MSH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S658.  Gene #59: 'MSH4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
MSH4 MUTATED 2 1 2
MSH4 WILD-TYPE 41 45 25
'FAM65B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00239 (Fisher's exact test), Q value = 1

Table S659.  Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
FAM65B MUTATED 13 0 0 3 0
FAM65B WILD-TYPE 143 23 54 4 2

Figure S146.  Get High-res Image Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAM65B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S660.  Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
FAM65B MUTATED 3 1 6
FAM65B WILD-TYPE 40 38 47
'FAM65B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S661.  Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
FAM65B MUTATED 3 4 3 2 1 0
FAM65B WILD-TYPE 36 32 34 8 39 24
'FAM65B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S662.  Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
FAM65B MUTATED 4 5 4 0
FAM65B WILD-TYPE 61 59 36 17
'FAM65B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S663.  Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
FAM65B MUTATED 7 5 4
FAM65B WILD-TYPE 72 80 77
'FAM65B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S664.  Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
FAM65B MUTATED 2 10 4
FAM65B WILD-TYPE 57 97 75
'FAM65B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S665.  Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
FAM65B MUTATED 5 5 5
FAM65B WILD-TYPE 73 66 86
'FAM65B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0256 (Fisher's exact test), Q value = 1

Table S666.  Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
FAM65B MUTATED 0 4 2 9
FAM65B WILD-TYPE 46 53 64 62

Figure S147.  Get High-res Image Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FAM65B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S667.  Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
FAM65B MUTATED 3 2 3
FAM65B WILD-TYPE 52 33 23
'FAM65B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S668.  Gene #60: 'FAM65B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
FAM65B MUTATED 2 2 4
FAM65B WILD-TYPE 41 44 23
'FN1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S669.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
FN1 MUTATED 3 3 0 0
FN1 WILD-TYPE 9 15 11 10
'FN1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0598 (Fisher's exact test), Q value = 1

Table S670.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
FN1 MUTATED 3 0 1 2 0
FN1 WILD-TYPE 9 10 6 5 15
'FN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00523 (Fisher's exact test), Q value = 1

Table S671.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
FN1 MUTATED 21 1 0 2 0
FN1 WILD-TYPE 135 22 54 5 2

Figure S148.  Get High-res Image Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S672.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
FN1 MUTATED 3 2 7
FN1 WILD-TYPE 40 37 46
'FN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S673.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
FN1 MUTATED 7 4 3 2 2 1
FN1 WILD-TYPE 32 32 34 8 38 23
'FN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S674.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
FN1 MUTATED 6 8 4 1
FN1 WILD-TYPE 59 56 36 16
'FN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S675.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
FN1 MUTATED 7 11 5
FN1 WILD-TYPE 72 74 76
'FN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0737 (Fisher's exact test), Q value = 1

Table S676.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
FN1 MUTATED 2 15 6
FN1 WILD-TYPE 57 92 73
'FN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S677.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
FN1 MUTATED 10 4 9
FN1 WILD-TYPE 68 67 82
'FN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 1

Table S678.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
FN1 MUTATED 2 4 3 14
FN1 WILD-TYPE 44 53 63 57

Figure S149.  Get High-res Image Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S679.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
FN1 MUTATED 6 2 3
FN1 WILD-TYPE 49 33 23
'FN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S680.  Gene #61: 'FN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
FN1 MUTATED 4 4 3
FN1 WILD-TYPE 39 42 24
'JAKMIP2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S681.  Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
JAKMIP2 MUTATED 2 1 0 0
JAKMIP2 WILD-TYPE 10 17 11 10
'JAKMIP2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S682.  Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
JAKMIP2 MUTATED 1 0 1 1 0
JAKMIP2 WILD-TYPE 11 10 6 6 15
'JAKMIP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 1

Table S683.  Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
JAKMIP2 MUTATED 9 1 0 2 0
JAKMIP2 WILD-TYPE 147 22 54 5 2

Figure S150.  Get High-res Image Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'JAKMIP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S684.  Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
JAKMIP2 MUTATED 2 0 2
JAKMIP2 WILD-TYPE 41 39 51
'JAKMIP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 1

Table S685.  Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
JAKMIP2 MUTATED 3 4 0 2 1 0
JAKMIP2 WILD-TYPE 36 32 37 8 39 24

Figure S151.  Get High-res Image Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'JAKMIP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S686.  Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
JAKMIP2 MUTATED 3 5 2 0
JAKMIP2 WILD-TYPE 62 59 38 17
'JAKMIP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0736 (Fisher's exact test), Q value = 1

Table S687.  Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
JAKMIP2 MUTATED 7 4 1
JAKMIP2 WILD-TYPE 72 81 80
'JAKMIP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0637 (Fisher's exact test), Q value = 1

Table S688.  Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
JAKMIP2 MUTATED 2 9 1
JAKMIP2 WILD-TYPE 57 98 78
'JAKMIP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0866 (Fisher's exact test), Q value = 1

Table S689.  Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
JAKMIP2 MUTATED 6 4 1
JAKMIP2 WILD-TYPE 72 67 90
'JAKMIP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S690.  Gene #62: 'JAKMIP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
JAKMIP2 MUTATED 1 3 1 6
JAKMIP2 WILD-TYPE 45 54 65 65
'WBP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S691.  Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
WBP4 MUTATED 7 0 0 1 0
WBP4 WILD-TYPE 149 23 54 6 2
'WBP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S692.  Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
WBP4 MUTATED 1 0 5
WBP4 WILD-TYPE 42 39 48
'WBP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S693.  Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
WBP4 MUTATED 1 4 2 0 0 1
WBP4 WILD-TYPE 38 32 35 10 40 23
'WBP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S694.  Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
WBP4 MUTATED 3 2 2 1
WBP4 WILD-TYPE 62 62 38 16
'WBP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S695.  Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
WBP4 MUTATED 4 3 1
WBP4 WILD-TYPE 75 82 80
'WBP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S696.  Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
WBP4 MUTATED 0 6 2
WBP4 WILD-TYPE 59 101 77
'WBP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.068 (Fisher's exact test), Q value = 1

Table S697.  Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
WBP4 MUTATED 5 0 2
WBP4 WILD-TYPE 73 71 89
'WBP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0868 (Fisher's exact test), Q value = 1

Table S698.  Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
WBP4 MUTATED 1 1 0 5
WBP4 WILD-TYPE 45 56 66 66
'WBP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S699.  Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
WBP4 MUTATED 2 0 2
WBP4 WILD-TYPE 53 35 24
'WBP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S700.  Gene #63: 'WBP4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
WBP4 MUTATED 2 0 2
WBP4 WILD-TYPE 41 46 25
'RASA1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S701.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
RASA1 MUTATED 3 2 1 0
RASA1 WILD-TYPE 9 16 10 10
'RASA1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S702.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
RASA1 MUTATED 2 0 1 2 1
RASA1 WILD-TYPE 10 10 6 5 14
'RASA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S703.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
RASA1 MUTATED 20 1 1 0 0
RASA1 WILD-TYPE 136 22 53 7 2
'RASA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S704.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
RASA1 MUTATED 3 1 5
RASA1 WILD-TYPE 40 38 48
'RASA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S705.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RASA1 MUTATED 4 3 3 3 4 1
RASA1 WILD-TYPE 35 33 34 7 36 23
'RASA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S706.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RASA1 MUTATED 5 7 5 1
RASA1 WILD-TYPE 60 57 35 16
'RASA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S707.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
RASA1 MUTATED 7 8 6
RASA1 WILD-TYPE 72 77 75
'RASA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S708.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
RASA1 MUTATED 4 11 6
RASA1 WILD-TYPE 55 96 73
'RASA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S709.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
RASA1 MUTATED 9 5 7
RASA1 WILD-TYPE 69 66 84
'RASA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S710.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
RASA1 MUTATED 2 7 5 7
RASA1 WILD-TYPE 44 50 61 64
'RASA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S711.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
RASA1 MUTATED 4 3 1
RASA1 WILD-TYPE 51 32 25
'RASA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S712.  Gene #64: 'RASA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
RASA1 MUTATED 3 2 3
RASA1 WILD-TYPE 40 44 24
'ALPK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0313 (Fisher's exact test), Q value = 1

Table S713.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ALPK2 MUTATED 4 1 0 0
ALPK2 WILD-TYPE 8 17 11 10

Figure S152.  Get High-res Image Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'ALPK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 1

Table S714.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ALPK2 MUTATED 1 0 1 3 0
ALPK2 WILD-TYPE 11 10 6 4 15

Figure S153.  Get High-res Image Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 1

Table S715.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ALPK2 MUTATED 18 0 0 1 0
ALPK2 WILD-TYPE 138 23 54 6 2

Figure S154.  Get High-res Image Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ALPK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S716.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ALPK2 MUTATED 3 1 5
ALPK2 WILD-TYPE 40 38 48
'ALPK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S717.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ALPK2 MUTATED 4 3 3 2 4 1
ALPK2 WILD-TYPE 35 33 34 8 36 23
'ALPK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S718.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ALPK2 MUTATED 4 6 6 1
ALPK2 WILD-TYPE 61 58 34 16
'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S719.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ALPK2 MUTATED 5 10 4
ALPK2 WILD-TYPE 74 75 77
'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S720.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ALPK2 MUTATED 3 11 5
ALPK2 WILD-TYPE 56 96 74
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S721.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ALPK2 MUTATED 9 4 6
ALPK2 WILD-TYPE 69 67 85
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S722.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ALPK2 MUTATED 5 5 3 6
ALPK2 WILD-TYPE 41 52 63 65
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S723.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ALPK2 MUTATED 6 2 1
ALPK2 WILD-TYPE 49 33 25
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S724.  Gene #65: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ALPK2 MUTATED 5 2 2
ALPK2 WILD-TYPE 38 44 25
'POLE MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S725.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
POLE MUTATED 2 3 1 0
POLE WILD-TYPE 10 15 10 10
'POLE MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0607 (Fisher's exact test), Q value = 1

Table S726.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
POLE MUTATED 3 0 2 1 0
POLE WILD-TYPE 9 10 5 6 15
'POLE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00644 (Fisher's exact test), Q value = 1

Table S727.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
POLE MUTATED 23 0 1 2 0
POLE WILD-TYPE 133 23 53 5 2

Figure S155.  Get High-res Image Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'POLE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S728.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
POLE MUTATED 2 6 6
POLE WILD-TYPE 41 33 47
'POLE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S729.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
POLE MUTATED 6 6 5 2 2 1
POLE WILD-TYPE 33 30 32 8 38 23
'POLE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S730.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
POLE MUTATED 9 8 4 1
POLE WILD-TYPE 56 56 36 16
'POLE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S731.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
POLE MUTATED 9 10 8
POLE WILD-TYPE 70 75 73
'POLE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S732.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
POLE MUTATED 3 15 9
POLE WILD-TYPE 56 92 70
'POLE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S733.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
POLE MUTATED 10 7 9
POLE WILD-TYPE 68 64 82
'POLE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S734.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
POLE MUTATED 3 6 4 13
POLE WILD-TYPE 43 51 62 58
'POLE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S735.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
POLE MUTATED 6 3 2
POLE WILD-TYPE 49 32 24
'POLE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S736.  Gene #66: 'POLE MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
POLE MUTATED 4 3 4
POLE WILD-TYPE 39 43 23
'KIF20B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S737.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
KIF20B MUTATED 3 1 1 0
KIF20B WILD-TYPE 9 17 10 10
'KIF20B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0457 (Fisher's exact test), Q value = 1

Table S738.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
KIF20B MUTATED 1 0 2 2 0
KIF20B WILD-TYPE 11 10 5 5 15

Figure S156.  Get High-res Image Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'KIF20B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00378 (Fisher's exact test), Q value = 1

Table S739.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
KIF20B MUTATED 19 0 0 2 0
KIF20B WILD-TYPE 137 23 54 5 2

Figure S157.  Get High-res Image Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KIF20B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S740.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
KIF20B MUTATED 3 3 6
KIF20B WILD-TYPE 40 36 47
'KIF20B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S741.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
KIF20B MUTATED 5 5 4 1 1 2
KIF20B WILD-TYPE 34 31 33 9 39 22
'KIF20B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S742.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
KIF20B MUTATED 6 6 4 2
KIF20B WILD-TYPE 59 58 36 15
'KIF20B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S743.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
KIF20B MUTATED 7 9 5
KIF20B WILD-TYPE 72 76 76
'KIF20B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0324 (Fisher's exact test), Q value = 1

Table S744.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
KIF20B MUTATED 1 14 6
KIF20B WILD-TYPE 58 93 73

Figure S158.  Get High-res Image Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'KIF20B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S745.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
KIF20B MUTATED 9 5 6
KIF20B WILD-TYPE 69 66 85
'KIF20B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S746.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
KIF20B MUTATED 3 5 2 10
KIF20B WILD-TYPE 43 52 64 61
'KIF20B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S747.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
KIF20B MUTATED 5 2 2
KIF20B WILD-TYPE 50 33 24
'KIF20B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S748.  Gene #67: 'KIF20B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
KIF20B MUTATED 4 1 4
KIF20B WILD-TYPE 39 45 23
'C14ORF166B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0285 (Fisher's exact test), Q value = 1

Table S749.  Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
C14ORF166B MUTATED 8 0 0 2 0
C14ORF166B WILD-TYPE 148 23 54 5 2

Figure S159.  Get High-res Image Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C14ORF166B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0126 (Fisher's exact test), Q value = 1

Table S750.  Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
C14ORF166B MUTATED 0 0 5
C14ORF166B WILD-TYPE 43 39 48

Figure S160.  Get High-res Image Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'C14ORF166B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 1

Table S751.  Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
C14ORF166B MUTATED 0 3 2 2 0 1
C14ORF166B WILD-TYPE 39 33 35 8 40 23

Figure S161.  Get High-res Image Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'C14ORF166B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S752.  Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
C14ORF166B MUTATED 2 2 3 1
C14ORF166B WILD-TYPE 63 62 37 16
'C14ORF166B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S753.  Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
C14ORF166B MUTATED 3 4 3
C14ORF166B WILD-TYPE 76 81 78
'C14ORF166B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S754.  Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
C14ORF166B MUTATED 0 6 4
C14ORF166B WILD-TYPE 59 101 75
'C14ORF166B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S755.  Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
C14ORF166B MUTATED 2 2 5
C14ORF166B WILD-TYPE 76 69 86
'C14ORF166B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S756.  Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
C14ORF166B MUTATED 1 1 2 5
C14ORF166B WILD-TYPE 45 56 64 66
'C14ORF166B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S757.  Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
C14ORF166B MUTATED 4 0 0
C14ORF166B WILD-TYPE 51 35 26
'C14ORF166B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S758.  Gene #68: 'C14ORF166B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
C14ORF166B MUTATED 2 1 1
C14ORF166B WILD-TYPE 41 45 26
'SLC26A8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 1

Table S759.  Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
SLC26A8 MUTATED 10 0 0 2 0
SLC26A8 WILD-TYPE 146 23 54 5 2

Figure S162.  Get High-res Image Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SLC26A8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S760.  Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SLC26A8 MUTATED 2 1 4
SLC26A8 WILD-TYPE 41 38 49
'SLC26A8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S761.  Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SLC26A8 MUTATED 4 4 2 1 0 0
SLC26A8 WILD-TYPE 35 32 35 9 40 24
'SLC26A8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S762.  Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SLC26A8 MUTATED 4 4 3 0
SLC26A8 WILD-TYPE 61 60 37 17
'SLC26A8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S763.  Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
SLC26A8 MUTATED 6 4 2
SLC26A8 WILD-TYPE 73 81 79
'SLC26A8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S764.  Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
SLC26A8 MUTATED 1 9 2
SLC26A8 WILD-TYPE 58 98 77
'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S765.  Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
SLC26A8 MUTATED 6 4 2
SLC26A8 WILD-TYPE 72 67 89
'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S766.  Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
SLC26A8 MUTATED 1 4 1 6
SLC26A8 WILD-TYPE 45 53 65 65
'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S767.  Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
SLC26A8 MUTATED 2 2 1
SLC26A8 WILD-TYPE 53 33 25
'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S768.  Gene #69: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
SLC26A8 MUTATED 1 1 3
SLC26A8 WILD-TYPE 42 45 24
'ZNF334 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S769.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZNF334 MUTATED 1 1 1 0
ZNF334 WILD-TYPE 11 17 10 10
'ZNF334 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0782 (Fisher's exact test), Q value = 1

Table S770.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZNF334 MUTATED 1 0 2 0 0
ZNF334 WILD-TYPE 11 10 5 7 15
'ZNF334 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0559 (Fisher's exact test), Q value = 1

Table S771.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ZNF334 MUTATED 13 0 1 2 0
ZNF334 WILD-TYPE 143 23 53 5 2
'ZNF334 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S772.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF334 MUTATED 4 1 6
ZNF334 WILD-TYPE 39 38 47
'ZNF334 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S773.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF334 MUTATED 6 4 2 0 1 2
ZNF334 WILD-TYPE 33 32 35 10 39 22
'ZNF334 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S774.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF334 MUTATED 6 6 1 2
ZNF334 WILD-TYPE 59 58 39 15
'ZNF334 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S775.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ZNF334 MUTATED 8 4 5
ZNF334 WILD-TYPE 71 81 76
'ZNF334 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S776.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ZNF334 MUTATED 3 8 6
ZNF334 WILD-TYPE 56 99 73
'ZNF334 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S777.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ZNF334 MUTATED 6 4 6
ZNF334 WILD-TYPE 72 67 85
'ZNF334 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S778.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ZNF334 MUTATED 2 4 3 7
ZNF334 WILD-TYPE 44 53 63 64
'ZNF334 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S779.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ZNF334 MUTATED 5 3 1
ZNF334 WILD-TYPE 50 32 25
'ZNF334 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S780.  Gene #70: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ZNF334 MUTATED 4 2 3
ZNF334 WILD-TYPE 39 44 24
'RRAS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 1

Table S781.  Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
RRAS2 MUTATED 2 0 0 2 0
RRAS2 WILD-TYPE 154 23 54 5 2

Figure S163.  Get High-res Image Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RRAS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S782.  Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RRAS2 MUTATED 1 0 1 1 0 1
RRAS2 WILD-TYPE 38 36 36 9 40 23
'RRAS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S783.  Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RRAS2 MUTATED 0 2 2 0
RRAS2 WILD-TYPE 65 62 38 17
'RRAS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S784.  Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
RRAS2 MUTATED 1 0 3
RRAS2 WILD-TYPE 78 85 78
'RRAS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S785.  Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
RRAS2 MUTATED 1 1 2
RRAS2 WILD-TYPE 58 106 77
'RRAS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S786.  Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
RRAS2 MUTATED 0 2 2
RRAS2 WILD-TYPE 78 69 89
'RRAS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S787.  Gene #71: 'RRAS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
RRAS2 MUTATED 0 1 1 2
RRAS2 WILD-TYPE 46 56 65 69
'PPM1N MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S788.  Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
PPM1N MUTATED 2 1 0 0
PPM1N WILD-TYPE 10 17 11 10
'PPM1N MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S789.  Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
PPM1N MUTATED 1 0 1 1 0
PPM1N WILD-TYPE 11 10 6 6 15
'PPM1N MUTATION STATUS' versus 'CN_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S790.  Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
PPM1N MUTATED 7 0 0 0 0
PPM1N WILD-TYPE 149 23 54 7 2
'PPM1N MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S791.  Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PPM1N MUTATED 1 1 1
PPM1N WILD-TYPE 42 38 52
'PPM1N MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S792.  Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PPM1N MUTATED 2 0 1 1 2 1
PPM1N WILD-TYPE 37 36 36 9 38 23
'PPM1N MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S793.  Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PPM1N MUTATED 1 3 2 1
PPM1N WILD-TYPE 64 61 38 16
'PPM1N MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0632 (Fisher's exact test), Q value = 1

Table S794.  Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
PPM1N MUTATED 2 5 0
PPM1N WILD-TYPE 77 80 81
'PPM1N MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S795.  Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
PPM1N MUTATED 1 5 1
PPM1N WILD-TYPE 58 102 78
'PPM1N MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S796.  Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
PPM1N MUTATED 4 2 1
PPM1N WILD-TYPE 74 69 90
'PPM1N MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S797.  Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
PPM1N MUTATED 2 3 0 2
PPM1N WILD-TYPE 44 54 66 69
'PPM1N MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S798.  Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
PPM1N MUTATED 1 1 1
PPM1N WILD-TYPE 54 34 25
'PPM1N MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S799.  Gene #72: 'PPM1N MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
PPM1N MUTATED 2 0 1
PPM1N WILD-TYPE 41 46 26
'FCN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S800.  Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
FCN1 MUTATED 7 0 0 1 0
FCN1 WILD-TYPE 149 23 54 6 2
'FCN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S801.  Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
FCN1 MUTATED 2 0 3
FCN1 WILD-TYPE 41 39 50
'FCN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S802.  Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
FCN1 MUTATED 2 1 1 1 0 1
FCN1 WILD-TYPE 37 35 36 9 40 23
'FCN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S803.  Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
FCN1 MUTATED 1 3 1 1
FCN1 WILD-TYPE 64 61 39 16
'FCN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S804.  Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
FCN1 MUTATED 4 3 1
FCN1 WILD-TYPE 75 82 80
'FCN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S805.  Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
FCN1 MUTATED 1 5 2
FCN1 WILD-TYPE 58 102 77
'FCN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S806.  Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
FCN1 MUTATED 3 2 3
FCN1 WILD-TYPE 75 69 88
'FCN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S807.  Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
FCN1 MUTATED 2 2 1 3
FCN1 WILD-TYPE 44 55 65 68
'FCN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S808.  Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
FCN1 MUTATED 2 1 1
FCN1 WILD-TYPE 53 34 25
'FCN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0381 (Fisher's exact test), Q value = 1

Table S809.  Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
FCN1 MUTATED 1 0 3
FCN1 WILD-TYPE 42 46 24

Figure S164.  Get High-res Image Gene #73: 'FCN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TIAL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S810.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
TIAL1 MUTATED 2 1 0 0
TIAL1 WILD-TYPE 10 17 11 10
'TIAL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0789 (Fisher's exact test), Q value = 1

Table S811.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
TIAL1 MUTATED 1 0 0 2 0
TIAL1 WILD-TYPE 11 10 7 5 15
'TIAL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S812.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
TIAL1 MUTATED 9 0 0 1 0
TIAL1 WILD-TYPE 147 23 54 6 2
'TIAL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S813.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
TIAL1 MUTATED 1 0 5
TIAL1 WILD-TYPE 42 39 48
'TIAL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S814.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TIAL1 MUTATED 1 1 4 1 1 1
TIAL1 WILD-TYPE 38 35 33 9 39 23
'TIAL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0508 (Fisher's exact test), Q value = 1

Table S815.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TIAL1 MUTATED 0 4 4 1
TIAL1 WILD-TYPE 65 60 36 16
'TIAL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0776 (Fisher's exact test), Q value = 1

Table S816.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
TIAL1 MUTATED 2 7 1
TIAL1 WILD-TYPE 77 78 80
'TIAL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S817.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
TIAL1 MUTATED 1 7 2
TIAL1 WILD-TYPE 58 100 77
'TIAL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S818.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
TIAL1 MUTATED 3 2 5
TIAL1 WILD-TYPE 75 69 86
'TIAL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S819.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
TIAL1 MUTATED 1 3 1 5
TIAL1 WILD-TYPE 45 54 65 66
'TIAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S820.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
TIAL1 MUTATED 5 1 0
TIAL1 WILD-TYPE 50 34 26
'TIAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0516 (Fisher's exact test), Q value = 1

Table S821.  Gene #74: 'TIAL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
TIAL1 MUTATED 3 0 3
TIAL1 WILD-TYPE 40 46 24
'PSMC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S822.  Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
PSMC4 MUTATED 9 0 0 1 0
PSMC4 WILD-TYPE 147 23 54 6 2
'PSMC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S823.  Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PSMC4 MUTATED 2 0 3
PSMC4 WILD-TYPE 41 39 50
'PSMC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S824.  Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PSMC4 MUTATED 3 3 0 1 0 1
PSMC4 WILD-TYPE 36 33 37 9 40 23
'PSMC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S825.  Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PSMC4 MUTATED 4 2 1 1
PSMC4 WILD-TYPE 61 62 39 16
'PSMC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S826.  Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
PSMC4 MUTATED 6 2 3
PSMC4 WILD-TYPE 73 83 78
'PSMC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S827.  Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
PSMC4 MUTATED 1 7 3
PSMC4 WILD-TYPE 58 100 76
'PSMC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S828.  Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
PSMC4 MUTATED 3 4 3
PSMC4 WILD-TYPE 75 67 88
'PSMC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0936 (Fisher's exact test), Q value = 1

Table S829.  Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
PSMC4 MUTATED 0 3 1 6
PSMC4 WILD-TYPE 46 54 65 65
'PSMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S830.  Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
PSMC4 MUTATED 1 2 1
PSMC4 WILD-TYPE 54 33 25
'PSMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0545 (Fisher's exact test), Q value = 1

Table S831.  Gene #75: 'PSMC4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
PSMC4 MUTATED 0 1 3
PSMC4 WILD-TYPE 43 45 24
'MFAP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S832.  Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
MFAP5 MUTATED 8 0 0 1 0
MFAP5 WILD-TYPE 148 23 54 6 2
'MFAP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S833.  Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MFAP5 MUTATED 3 1 1
MFAP5 WILD-TYPE 40 38 52
'MFAP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0042 (Fisher's exact test), Q value = 1

Table S834.  Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MFAP5 MUTATED 5 2 0 2 0 0
MFAP5 WILD-TYPE 34 34 37 8 40 24

Figure S165.  Get High-res Image Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MFAP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S835.  Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MFAP5 MUTATED 4 3 2 0
MFAP5 WILD-TYPE 61 61 38 17
'MFAP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S836.  Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
MFAP5 MUTATED 4 3 2
MFAP5 WILD-TYPE 75 82 79
'MFAP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S837.  Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
MFAP5 MUTATED 3 5 1
MFAP5 WILD-TYPE 56 102 78
'MFAP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S838.  Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
MFAP5 MUTATED 4 4 1
MFAP5 WILD-TYPE 74 67 90
'MFAP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S839.  Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
MFAP5 MUTATED 1 5 1 2
MFAP5 WILD-TYPE 45 52 65 69
'MFAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S840.  Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
MFAP5 MUTATED 0 2 1
MFAP5 WILD-TYPE 55 33 25
'MFAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S841.  Gene #76: 'MFAP5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
MFAP5 MUTATED 1 0 2
MFAP5 WILD-TYPE 42 46 25
'RAB3GAP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S842.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
RAB3GAP1 MUTATED 1 1 1 0
RAB3GAP1 WILD-TYPE 11 17 10 10
'RAB3GAP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0768 (Fisher's exact test), Q value = 1

Table S843.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
RAB3GAP1 MUTATED 1 0 2 0 0
RAB3GAP1 WILD-TYPE 11 10 5 7 15
'RAB3GAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 1

Table S844.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
RAB3GAP1 MUTATED 12 2 0 2 0
RAB3GAP1 WILD-TYPE 144 21 54 5 2

Figure S166.  Get High-res Image Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RAB3GAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S845.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
RAB3GAP1 MUTATED 1 2 5
RAB3GAP1 WILD-TYPE 42 37 48
'RAB3GAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S846.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RAB3GAP1 MUTATED 4 5 3 0 0 2
RAB3GAP1 WILD-TYPE 35 31 34 10 40 22
'RAB3GAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S847.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RAB3GAP1 MUTATED 5 5 2 2
RAB3GAP1 WILD-TYPE 60 59 38 15
'RAB3GAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S848.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
RAB3GAP1 MUTATED 6 5 4
RAB3GAP1 WILD-TYPE 73 80 77
'RAB3GAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S849.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
RAB3GAP1 MUTATED 3 8 4
RAB3GAP1 WILD-TYPE 56 99 75
'RAB3GAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S850.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
RAB3GAP1 MUTATED 4 6 5
RAB3GAP1 WILD-TYPE 74 65 86
'RAB3GAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 1

Table S851.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
RAB3GAP1 MUTATED 2 2 3 8
RAB3GAP1 WILD-TYPE 44 55 63 63
'RAB3GAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S852.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
RAB3GAP1 MUTATED 3 2 1
RAB3GAP1 WILD-TYPE 52 33 25
'RAB3GAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0791 (Fisher's exact test), Q value = 1

Table S853.  Gene #77: 'RAB3GAP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
RAB3GAP1 MUTATED 4 0 2
RAB3GAP1 WILD-TYPE 39 46 25
'MSH6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S854.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MSH6 MUTATED 2 1 0 0
MSH6 WILD-TYPE 10 17 11 10
'MSH6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S855.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MSH6 MUTATED 1 0 1 1 0
MSH6 WILD-TYPE 11 10 6 6 15
'MSH6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00092 (Fisher's exact test), Q value = 1

Table S856.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
MSH6 MUTATED 12 0 1 4 0
MSH6 WILD-TYPE 144 23 53 3 2

Figure S167.  Get High-res Image Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MSH6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S857.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MSH6 MUTATED 2 1 4
MSH6 WILD-TYPE 41 38 49
'MSH6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S858.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MSH6 MUTATED 4 5 1 2 1 2
MSH6 WILD-TYPE 35 31 36 8 39 22
'MSH6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S859.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MSH6 MUTATED 5 6 3 1
MSH6 WILD-TYPE 60 58 37 16
'MSH6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S860.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
MSH6 MUTATED 7 7 3
MSH6 WILD-TYPE 72 78 78
'MSH6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S861.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
MSH6 MUTATED 3 11 3
MSH6 WILD-TYPE 56 96 76
'MSH6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S862.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
MSH6 MUTATED 7 5 4
MSH6 WILD-TYPE 71 66 87
'MSH6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0918 (Fisher's exact test), Q value = 1

Table S863.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
MSH6 MUTATED 2 5 1 8
MSH6 WILD-TYPE 44 52 65 63
'MSH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S864.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
MSH6 MUTATED 3 1 1
MSH6 WILD-TYPE 52 34 25
'MSH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S865.  Gene #78: 'MSH6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
MSH6 MUTATED 2 1 2
MSH6 WILD-TYPE 41 45 25
'BMP2K MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S866.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
BMP2K MUTATED 3 1 0 0
BMP2K WILD-TYPE 9 17 11 10
'BMP2K MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0921 (Fisher's exact test), Q value = 1

Table S867.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
BMP2K MUTATED 1 0 1 2 0
BMP2K WILD-TYPE 11 10 6 5 15
'BMP2K MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 1

Table S868.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
BMP2K MUTATED 12 0 0 1 0
BMP2K WILD-TYPE 144 23 54 6 2
'BMP2K MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S869.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
BMP2K MUTATED 1 1 5
BMP2K WILD-TYPE 42 38 48
'BMP2K MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S870.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
BMP2K MUTATED 4 2 2 0 2 1
BMP2K WILD-TYPE 35 34 35 10 38 23
'BMP2K MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S871.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
BMP2K MUTATED 4 4 2 1
BMP2K WILD-TYPE 61 60 38 16
'BMP2K MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S872.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
BMP2K MUTATED 2 6 4
BMP2K WILD-TYPE 77 79 77
'BMP2K MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S873.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
BMP2K MUTATED 1 7 4
BMP2K WILD-TYPE 58 100 75
'BMP2K MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S874.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
BMP2K MUTATED 6 1 6
BMP2K WILD-TYPE 72 70 85
'BMP2K MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S875.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
BMP2K MUTATED 2 2 3 6
BMP2K WILD-TYPE 44 55 63 65
'BMP2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S876.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
BMP2K MUTATED 6 1 0
BMP2K WILD-TYPE 49 34 26
'BMP2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S877.  Gene #79: 'BMP2K MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
BMP2K MUTATED 2 4 1
BMP2K WILD-TYPE 41 42 26
'ZNF606 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S878.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZNF606 MUTATED 3 1 0 0
ZNF606 WILD-TYPE 9 17 11 10
'ZNF606 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.092 (Fisher's exact test), Q value = 1

Table S879.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZNF606 MUTATED 1 0 1 2 0
ZNF606 WILD-TYPE 11 10 6 5 15
'ZNF606 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 1

Table S880.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ZNF606 MUTATED 14 0 0 2 0
ZNF606 WILD-TYPE 142 23 54 5 2

Figure S168.  Get High-res Image Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF606 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S881.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF606 MUTATED 1 1 6
ZNF606 WILD-TYPE 42 38 47
'ZNF606 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S882.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF606 MUTATED 3 5 3 0 2 1
ZNF606 WILD-TYPE 36 31 34 10 38 23
'ZNF606 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S883.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF606 MUTATED 6 5 2 1
ZNF606 WILD-TYPE 59 59 38 16
'ZNF606 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S884.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ZNF606 MUTATED 6 6 4
ZNF606 WILD-TYPE 73 79 77
'ZNF606 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S885.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ZNF606 MUTATED 3 9 4
ZNF606 WILD-TYPE 56 98 75
'ZNF606 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S886.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ZNF606 MUTATED 5 5 5
ZNF606 WILD-TYPE 73 66 86
'ZNF606 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S887.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ZNF606 MUTATED 2 3 3 7
ZNF606 WILD-TYPE 44 54 63 64
'ZNF606 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S888.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ZNF606 MUTATED 4 2 0
ZNF606 WILD-TYPE 51 33 26
'ZNF606 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S889.  Gene #80: 'ZNF606 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ZNF606 MUTATED 3 1 2
ZNF606 WILD-TYPE 40 45 25
'ZNF263 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S890.  Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ZNF263 MUTATED 7 0 0 0 0
ZNF263 WILD-TYPE 149 23 54 7 2
'ZNF263 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S891.  Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF263 MUTATED 1 0 3
ZNF263 WILD-TYPE 42 39 50
'ZNF263 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S892.  Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF263 MUTATED 3 1 2 0 1 0
ZNF263 WILD-TYPE 36 35 35 10 39 24
'ZNF263 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S893.  Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF263 MUTATED 2 3 2 0
ZNF263 WILD-TYPE 63 61 38 17
'ZNF263 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S894.  Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ZNF263 MUTATED 1 4 2
ZNF263 WILD-TYPE 78 81 79
'ZNF263 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S895.  Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ZNF263 MUTATED 0 4 3
ZNF263 WILD-TYPE 59 103 76
'ZNF263 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S896.  Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ZNF263 MUTATED 3 0 4
ZNF263 WILD-TYPE 75 71 87
'ZNF263 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S897.  Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ZNF263 MUTATED 1 0 1 5
ZNF263 WILD-TYPE 45 57 65 66
'ZNF263 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S898.  Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ZNF263 MUTATED 3 0 1
ZNF263 WILD-TYPE 52 35 25
'ZNF263 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S899.  Gene #81: 'ZNF263 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ZNF263 MUTATED 3 0 1
ZNF263 WILD-TYPE 40 46 26
'CHEK2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S900.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CHEK2 MUTATED 1 2 0 0
CHEK2 WILD-TYPE 11 16 11 10
'CHEK2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S901.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CHEK2 MUTATED 2 0 1 0 0
CHEK2 WILD-TYPE 10 10 6 7 15
'CHEK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0704 (Fisher's exact test), Q value = 1

Table S902.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
CHEK2 MUTATED 10 0 1 2 0
CHEK2 WILD-TYPE 146 23 53 5 2
'CHEK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S903.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CHEK2 MUTATED 2 0 4
CHEK2 WILD-TYPE 41 39 49
'CHEK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S904.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CHEK2 MUTATED 2 5 1 1 1 0
CHEK2 WILD-TYPE 37 31 36 9 39 24
'CHEK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S905.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CHEK2 MUTATED 4 3 3 0
CHEK2 WILD-TYPE 61 61 37 17
'CHEK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S906.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
CHEK2 MUTATED 7 4 2
CHEK2 WILD-TYPE 72 81 79
'CHEK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0615 (Fisher's exact test), Q value = 1

Table S907.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
CHEK2 MUTATED 1 10 2
CHEK2 WILD-TYPE 58 97 77
'CHEK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S908.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
CHEK2 MUTATED 7 2 3
CHEK2 WILD-TYPE 71 69 88
'CHEK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S909.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
CHEK2 MUTATED 2 2 2 6
CHEK2 WILD-TYPE 44 55 64 65
'CHEK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S910.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
CHEK2 MUTATED 3 0 1
CHEK2 WILD-TYPE 52 35 25
'CHEK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S911.  Gene #82: 'CHEK2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
CHEK2 MUTATED 1 2 1
CHEK2 WILD-TYPE 42 44 26
'MGA MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S912.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MGA MUTATED 3 2 0 1
MGA WILD-TYPE 9 16 11 9
'MGA MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S913.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MGA MUTATED 2 0 1 2 1
MGA WILD-TYPE 10 10 6 5 14
'MGA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S914.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
MGA MUTATED 20 1 3 2 0
MGA WILD-TYPE 136 22 51 5 2
'MGA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S915.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MGA MUTATED 5 3 5
MGA WILD-TYPE 38 36 48
'MGA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S916.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MGA MUTATED 8 6 1 2 3 2
MGA WILD-TYPE 31 30 36 8 37 22
'MGA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S917.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MGA MUTATED 11 7 2 2
MGA WILD-TYPE 54 57 38 15
'MGA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 1

Table S918.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
MGA MUTATED 12 10 3
MGA WILD-TYPE 67 75 78

Figure S169.  Get High-res Image Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'MGA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0395 (Fisher's exact test), Q value = 1

Table S919.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
MGA MUTATED 6 16 3
MGA WILD-TYPE 53 91 76

Figure S170.  Get High-res Image Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MGA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S920.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
MGA MUTATED 8 11 5
MGA WILD-TYPE 70 60 86
'MGA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0515 (Fisher's exact test), Q value = 1

Table S921.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
MGA MUTATED 2 7 3 12
MGA WILD-TYPE 44 50 63 59
'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S922.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
MGA MUTATED 3 5 3
MGA WILD-TYPE 52 30 23
'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0388 (Fisher's exact test), Q value = 1

Table S923.  Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
MGA MUTATED 3 2 6
MGA WILD-TYPE 40 44 21

Figure S171.  Get High-res Image Gene #83: 'MGA MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RHBDD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S924.  Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
RHBDD3 MUTATED 4 0 0 0 0
RHBDD3 WILD-TYPE 152 23 54 7 2
'RHBDD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S925.  Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
RHBDD3 MUTATED 0 0 3
RHBDD3 WILD-TYPE 43 39 50
'RHBDD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S926.  Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RHBDD3 MUTATED 0 1 1 0 1 1
RHBDD3 WILD-TYPE 39 35 36 10 39 23
'RHBDD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S927.  Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RHBDD3 MUTATED 1 1 1 1
RHBDD3 WILD-TYPE 64 63 39 16
'RHBDD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S928.  Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
RHBDD3 MUTATED 1 3 0
RHBDD3 WILD-TYPE 78 82 81
'RHBDD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S929.  Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
RHBDD3 MUTATED 0 3 1
RHBDD3 WILD-TYPE 59 104 78
'RHBDD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S930.  Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
RHBDD3 MUTATED 1 2 1
RHBDD3 WILD-TYPE 77 69 90
'RHBDD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S931.  Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
RHBDD3 MUTATED 1 0 0 3
RHBDD3 WILD-TYPE 45 57 66 68
'RHBDD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S932.  Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
RHBDD3 MUTATED 1 1 1
RHBDD3 WILD-TYPE 54 34 25
'RHBDD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S933.  Gene #84: 'RHBDD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
RHBDD3 MUTATED 1 0 2
RHBDD3 WILD-TYPE 42 46 25
'TAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0292 (Fisher's exact test), Q value = 1

Table S934.  Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
TAP1 MUTATED 6 0 0 2 0
TAP1 WILD-TYPE 150 23 54 5 2

Figure S172.  Get High-res Image Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'TAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S935.  Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
TAP1 MUTATED 1 0 2
TAP1 WILD-TYPE 42 39 51
'TAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S936.  Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TAP1 MUTATED 1 3 1 0 1 1
TAP1 WILD-TYPE 38 33 36 10 39 23
'TAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S937.  Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TAP1 MUTATED 2 3 1 1
TAP1 WILD-TYPE 63 61 39 16
'TAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S938.  Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
TAP1 MUTATED 4 4 0
TAP1 WILD-TYPE 75 81 81
'TAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S939.  Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
TAP1 MUTATED 1 6 1
TAP1 WILD-TYPE 58 101 78
'TAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S940.  Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
TAP1 MUTATED 4 2 1
TAP1 WILD-TYPE 74 69 90
'TAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0865 (Fisher's exact test), Q value = 1

Table S941.  Gene #85: 'TAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
TAP1 MUTATED 1 1 0 5
TAP1 WILD-TYPE 45 56 66 66
'RB1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S942.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
RB1 MUTATED 1 3 2 0
RB1 WILD-TYPE 11 15 9 10
'RB1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00572 (Fisher's exact test), Q value = 1

Table S943.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
RB1 MUTATED 5 0 0 1 0
RB1 WILD-TYPE 7 10 7 6 15

Figure S173.  Get High-res Image Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'RB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S944.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
RB1 MUTATED 15 1 2 2 0
RB1 WILD-TYPE 141 22 52 5 2
'RB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S945.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
RB1 MUTATED 2 1 6
RB1 WILD-TYPE 41 38 47
'RB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S946.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RB1 MUTATED 3 6 2 3 3 1
RB1 WILD-TYPE 36 30 35 7 37 23
'RB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S947.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RB1 MUTATED 7 4 6 1
RB1 WILD-TYPE 58 60 34 16
'RB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S948.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
RB1 MUTATED 9 6 5
RB1 WILD-TYPE 70 79 76
'RB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S949.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
RB1 MUTATED 2 13 5
RB1 WILD-TYPE 57 94 74
'RB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S950.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
RB1 MUTATED 9 4 6
RB1 WILD-TYPE 69 67 85
'RB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0912 (Fisher's exact test), Q value = 1

Table S951.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
RB1 MUTATED 1 5 3 10
RB1 WILD-TYPE 45 52 63 61
'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S952.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
RB1 MUTATED 3 1 1
RB1 WILD-TYPE 52 34 25
'RB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0812 (Fisher's exact test), Q value = 1

Table S953.  Gene #86: 'RB1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
RB1 MUTATED 4 0 1
RB1 WILD-TYPE 39 46 26
'SLC1A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S954.  Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
SLC1A3 MUTATED 8 0 2 2 0
SLC1A3 WILD-TYPE 148 23 52 5 2
'SLC1A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S955.  Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SLC1A3 MUTATED 3 1 2
SLC1A3 WILD-TYPE 40 38 51
'SLC1A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 1

Table S956.  Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SLC1A3 MUTATED 2 4 1 2 0 0
SLC1A3 WILD-TYPE 37 32 36 8 40 24

Figure S174.  Get High-res Image Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'SLC1A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S957.  Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SLC1A3 MUTATED 4 2 3 0
SLC1A3 WILD-TYPE 61 62 37 17
'SLC1A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S958.  Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
SLC1A3 MUTATED 7 2 3
SLC1A3 WILD-TYPE 72 83 78
'SLC1A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S959.  Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
SLC1A3 MUTATED 3 6 3
SLC1A3 WILD-TYPE 56 101 76
'SLC1A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S960.  Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
SLC1A3 MUTATED 3 6 3
SLC1A3 WILD-TYPE 75 65 88
'SLC1A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S961.  Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
SLC1A3 MUTATED 0 4 2 6
SLC1A3 WILD-TYPE 46 53 64 65
'SLC1A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S962.  Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
SLC1A3 MUTATED 2 3 1
SLC1A3 WILD-TYPE 53 32 25
'SLC1A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S963.  Gene #87: 'SLC1A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
SLC1A3 MUTATED 2 1 3
SLC1A3 WILD-TYPE 41 45 24
'ATAD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0508 (Fisher's exact test), Q value = 1

Table S964.  Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ATAD5 MUTATED 14 0 1 2 0
ATAD5 WILD-TYPE 142 23 53 5 2
'ATAD5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S965.  Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ATAD5 MUTATED 3 1 6
ATAD5 WILD-TYPE 40 38 47
'ATAD5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S966.  Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ATAD5 MUTATED 2 4 2 2 2 1
ATAD5 WILD-TYPE 37 32 35 8 38 23
'ATAD5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S967.  Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ATAD5 MUTATED 4 5 4 0
ATAD5 WILD-TYPE 61 59 36 17
'ATAD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S968.  Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ATAD5 MUTATED 7 5 5
ATAD5 WILD-TYPE 72 80 76
'ATAD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S969.  Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ATAD5 MUTATED 1 11 5
ATAD5 WILD-TYPE 58 96 74
'ATAD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S970.  Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ATAD5 MUTATED 7 3 6
ATAD5 WILD-TYPE 71 68 85
'ATAD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S971.  Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ATAD5 MUTATED 1 4 3 8
ATAD5 WILD-TYPE 45 53 63 63
'ATAD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S972.  Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ATAD5 MUTATED 4 1 2
ATAD5 WILD-TYPE 51 34 24
'ATAD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S973.  Gene #88: 'ATAD5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ATAD5 MUTATED 2 2 3
ATAD5 WILD-TYPE 41 44 24
'ALG8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S974.  Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ALG8 MUTATED 1 1 1 0
ALG8 WILD-TYPE 11 17 10 10
'ALG8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S975.  Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ALG8 MUTATED 2 0 1 0 0
ALG8 WILD-TYPE 10 10 6 7 15
'ALG8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S976.  Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ALG8 MUTATED 8 0 1 1 0
ALG8 WILD-TYPE 148 23 53 6 2
'ALG8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 1

Table S977.  Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ALG8 MUTATED 0 0 4
ALG8 WILD-TYPE 43 39 49

Figure S175.  Get High-res Image Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'ALG8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S978.  Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ALG8 MUTATED 1 3 2 1 1 2
ALG8 WILD-TYPE 38 33 35 9 39 22
'ALG8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S979.  Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ALG8 MUTATED 2 4 2 2
ALG8 WILD-TYPE 63 60 38 15
'ALG8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S980.  Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ALG8 MUTATED 2 5 3
ALG8 WILD-TYPE 77 80 78
'ALG8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S981.  Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ALG8 MUTATED 1 5 4
ALG8 WILD-TYPE 58 102 75
'ALG8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S982.  Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ALG8 MUTATED 4 2 4
ALG8 WILD-TYPE 74 69 87
'ALG8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S983.  Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ALG8 MUTATED 3 1 3 3
ALG8 WILD-TYPE 43 56 63 68
'ALG8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S984.  Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ALG8 MUTATED 2 1 0
ALG8 WILD-TYPE 53 34 26
'ALG8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S985.  Gene #89: 'ALG8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ALG8 MUTATED 1 1 1
ALG8 WILD-TYPE 42 45 26
'TIGD4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S986.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
TIGD4 MUTATED 1 2 1 0
TIGD4 WILD-TYPE 11 16 10 10
'TIGD4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S987.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
TIGD4 MUTATED 2 0 1 0 1
TIGD4 WILD-TYPE 10 10 6 7 14
'TIGD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S988.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
TIGD4 MUTATED 10 1 1 1 0
TIGD4 WILD-TYPE 146 22 53 6 2
'TIGD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S989.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
TIGD4 MUTATED 2 1 3
TIGD4 WILD-TYPE 41 38 50
'TIGD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 1

Table S990.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TIGD4 MUTATED 4 5 1 2 0 0
TIGD4 WILD-TYPE 35 31 36 8 40 24

Figure S176.  Get High-res Image Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'TIGD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S991.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TIGD4 MUTATED 5 3 4 0
TIGD4 WILD-TYPE 60 61 36 17
'TIGD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S992.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
TIGD4 MUTATED 6 5 2
TIGD4 WILD-TYPE 73 80 79
'TIGD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0613 (Fisher's exact test), Q value = 1

Table S993.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
TIGD4 MUTATED 1 10 2
TIGD4 WILD-TYPE 58 97 77
'TIGD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S994.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
TIGD4 MUTATED 7 3 2
TIGD4 WILD-TYPE 71 68 89
'TIGD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S995.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
TIGD4 MUTATED 1 4 2 5
TIGD4 WILD-TYPE 45 53 64 66
'TIGD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S996.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
TIGD4 MUTATED 2 2 1
TIGD4 WILD-TYPE 53 33 25
'TIGD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S997.  Gene #90: 'TIGD4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
TIGD4 MUTATED 1 1 3
TIGD4 WILD-TYPE 42 45 24
'PARG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0167 (Fisher's exact test), Q value = 1

Table S998.  Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
PARG MUTATED 7 0 0 1 1
PARG WILD-TYPE 149 23 54 6 1

Figure S177.  Get High-res Image Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PARG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S999.  Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PARG MUTATED 2 1 3
PARG WILD-TYPE 41 38 50
'PARG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S1000.  Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PARG MUTATED 2 3 2 1 0 0
PARG WILD-TYPE 37 33 35 9 40 24
'PARG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S1001.  Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PARG MUTATED 2 4 2 0
PARG WILD-TYPE 63 60 38 17
'PARG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S1002.  Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
PARG MUTATED 5 2 1
PARG WILD-TYPE 74 83 80
'PARG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S1003.  Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
PARG MUTATED 1 6 1
PARG WILD-TYPE 58 101 78
'PARG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S1004.  Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
PARG MUTATED 5 3 1
PARG WILD-TYPE 73 68 90
'PARG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S1005.  Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
PARG MUTATED 0 4 1 4
PARG WILD-TYPE 46 53 65 67
'PARG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S1006.  Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
PARG MUTATED 1 2 1
PARG WILD-TYPE 54 33 25
'PARG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0566 (Fisher's exact test), Q value = 1

Table S1007.  Gene #91: 'PARG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
PARG MUTATED 0 1 3
PARG WILD-TYPE 43 45 24
'FAT1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.00606 (Fisher's exact test), Q value = 1

Table S1008.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
FAT1 MUTATED 6 5 0 0
FAT1 WILD-TYPE 6 13 11 10

Figure S178.  Get High-res Image Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'FAT1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00135 (Fisher's exact test), Q value = 1

Table S1009.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
FAT1 MUTATED 4 1 1 5 0
FAT1 WILD-TYPE 8 9 6 2 15

Figure S179.  Get High-res Image Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'FAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.028 (Fisher's exact test), Q value = 1

Table S1010.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
FAT1 MUTATED 31 3 3 3 0
FAT1 WILD-TYPE 125 20 51 4 2

Figure S180.  Get High-res Image Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'FAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00645 (Fisher's exact test), Q value = 1

Table S1011.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
FAT1 MUTATED 4 2 15
FAT1 WILD-TYPE 39 37 38

Figure S181.  Get High-res Image Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'FAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S1012.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
FAT1 MUTATED 9 9 7 3 3 4
FAT1 WILD-TYPE 30 27 30 7 37 20
'FAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S1013.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
FAT1 MUTATED 14 7 11 3
FAT1 WILD-TYPE 51 57 29 14
'FAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S1014.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
FAT1 MUTATED 11 19 10
FAT1 WILD-TYPE 68 66 71
'FAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.041 (Fisher's exact test), Q value = 1

Table S1015.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
FAT1 MUTATED 4 23 13
FAT1 WILD-TYPE 55 84 66

Figure S182.  Get High-res Image Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'FAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S1016.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
FAT1 MUTATED 16 9 13
FAT1 WILD-TYPE 62 62 78
'FAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0349 (Fisher's exact test), Q value = 1

Table S1017.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
FAT1 MUTATED 4 7 8 19
FAT1 WILD-TYPE 42 50 58 52

Figure S183.  Get High-res Image Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'FAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S1018.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
FAT1 MUTATED 8 6 4
FAT1 WILD-TYPE 47 29 22
'FAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S1019.  Gene #92: 'FAT1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
FAT1 MUTATED 6 5 7
FAT1 WILD-TYPE 37 41 20
'DYM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S1020.  Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
DYM MUTATED 10 0 0 0 0
DYM WILD-TYPE 146 23 54 7 2
'DYM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S1021.  Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
DYM MUTATED 2 0 4
DYM WILD-TYPE 41 39 49
'DYM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S1022.  Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
DYM MUTATED 2 3 2 0 0 2
DYM WILD-TYPE 37 33 35 10 40 22
'DYM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S1023.  Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
DYM MUTATED 4 2 1 2
DYM WILD-TYPE 61 62 39 15
'DYM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S1024.  Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
DYM MUTATED 4 4 2
DYM WILD-TYPE 75 81 79
'DYM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1025.  Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
DYM MUTATED 2 5 3
DYM WILD-TYPE 57 102 76
'DYM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1026.  Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
DYM MUTATED 3 3 3
DYM WILD-TYPE 75 68 88
'DYM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S1027.  Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
DYM MUTATED 1 4 0 4
DYM WILD-TYPE 45 53 66 67
'DYM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S1028.  Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
DYM MUTATED 3 2 0
DYM WILD-TYPE 52 33 26
'DYM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S1029.  Gene #93: 'DYM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
DYM MUTATED 3 0 2
DYM WILD-TYPE 40 46 25
'PSMD3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S1030.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
PSMD3 MUTATED 1 2 0 0
PSMD3 WILD-TYPE 11 16 11 10
'PSMD3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S1031.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
PSMD3 MUTATED 2 0 0 1 0
PSMD3 WILD-TYPE 10 10 7 6 15
'PSMD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S1032.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
PSMD3 MUTATED 9 0 0 1 0
PSMD3 WILD-TYPE 147 23 54 6 2
'PSMD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S1033.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PSMD3 MUTATED 3 1 1
PSMD3 WILD-TYPE 40 38 52
'PSMD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S1034.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PSMD3 MUTATED 5 1 1 0 2 0
PSMD3 WILD-TYPE 34 35 36 10 38 24
'PSMD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1035.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PSMD3 MUTATED 4 4 1 0
PSMD3 WILD-TYPE 61 60 39 17
'PSMD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S1036.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
PSMD3 MUTATED 5 4 2
PSMD3 WILD-TYPE 74 81 79
'PSMD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S1037.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
PSMD3 MUTATED 3 6 2
PSMD3 WILD-TYPE 56 101 77
'PSMD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S1038.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
PSMD3 MUTATED 5 4 2
PSMD3 WILD-TYPE 73 67 89
'PSMD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S1039.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
PSMD3 MUTATED 2 4 2 3
PSMD3 WILD-TYPE 44 53 64 68
'PSMD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S1040.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
PSMD3 MUTATED 1 2 1
PSMD3 WILD-TYPE 54 33 25
'PSMD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S1041.  Gene #94: 'PSMD3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
PSMD3 MUTATED 1 1 2
PSMD3 WILD-TYPE 42 45 25
'PPM1D MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1042.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
PPM1D MUTATED 2 1 0 0
PPM1D WILD-TYPE 10 17 11 10
'PPM1D MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S1043.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
PPM1D MUTATED 1 0 1 1 0
PPM1D WILD-TYPE 11 10 6 6 15
'PPM1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S1044.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
PPM1D MUTATED 10 0 0 1 0
PPM1D WILD-TYPE 146 23 54 6 2
'PPM1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S1045.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PPM1D MUTATED 0 1 4
PPM1D WILD-TYPE 43 38 49
'PPM1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S1046.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PPM1D MUTATED 2 5 2 1 1 0
PPM1D WILD-TYPE 37 31 35 9 39 24
'PPM1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S1047.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PPM1D MUTATED 5 3 3 0
PPM1D WILD-TYPE 60 61 37 17
'PPM1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S1048.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
PPM1D MUTATED 3 6 2
PPM1D WILD-TYPE 76 79 79
'PPM1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0291 (Fisher's exact test), Q value = 1

Table S1049.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
PPM1D MUTATED 0 9 2
PPM1D WILD-TYPE 59 98 77

Figure S184.  Get High-res Image Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'PPM1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S1050.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
PPM1D MUTATED 4 4 2
PPM1D WILD-TYPE 74 67 89
'PPM1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S1051.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
PPM1D MUTATED 2 1 1 6
PPM1D WILD-TYPE 44 56 65 65
'PPM1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S1052.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
PPM1D MUTATED 1 2 1
PPM1D WILD-TYPE 54 33 25
'PPM1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S1053.  Gene #95: 'PPM1D MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
PPM1D MUTATED 1 1 2
PPM1D WILD-TYPE 42 45 25
'ZMYM2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S1054.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZMYM2 MUTATED 2 1 0 0
ZMYM2 WILD-TYPE 10 17 11 10
'ZMYM2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0776 (Fisher's exact test), Q value = 1

Table S1055.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZMYM2 MUTATED 1 0 0 2 0
ZMYM2 WILD-TYPE 11 10 7 5 15
'ZMYM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 1

Table S1056.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ZMYM2 MUTATED 13 0 1 2 0
ZMYM2 WILD-TYPE 143 23 53 5 2
'ZMYM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1057.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZMYM2 MUTATED 3 2 4
ZMYM2 WILD-TYPE 40 37 49
'ZMYM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S1058.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZMYM2 MUTATED 3 5 2 1 1 1
ZMYM2 WILD-TYPE 36 31 35 9 39 23
'ZMYM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S1059.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZMYM2 MUTATED 6 3 3 1
ZMYM2 WILD-TYPE 59 61 37 16
'ZMYM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S1060.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ZMYM2 MUTATED 8 6 3
ZMYM2 WILD-TYPE 71 79 78
'ZMYM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S1061.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ZMYM2 MUTATED 3 11 3
ZMYM2 WILD-TYPE 56 96 76
'ZMYM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S1062.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ZMYM2 MUTATED 6 5 5
ZMYM2 WILD-TYPE 72 66 86
'ZMYM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S1063.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ZMYM2 MUTATED 1 5 2 8
ZMYM2 WILD-TYPE 45 52 64 63
'ZMYM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S1064.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ZMYM2 MUTATED 1 3 1
ZMYM2 WILD-TYPE 54 32 25
'ZMYM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S1065.  Gene #96: 'ZMYM2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ZMYM2 MUTATED 3 0 2
ZMYM2 WILD-TYPE 40 46 25
'INPP4B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S1066.  Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
INPP4B MUTATED 1 3 0 0
INPP4B WILD-TYPE 11 15 11 10
'INPP4B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0765 (Fisher's exact test), Q value = 1

Table S1067.  Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
INPP4B MUTATED 3 0 1 0 0
INPP4B WILD-TYPE 9 10 6 7 15
'INPP4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S1068.  Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
INPP4B MUTATED 10 0 0 1 0
INPP4B WILD-TYPE 146 23 54 6 2
'INPP4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0281 (Fisher's exact test), Q value = 1

Table S1069.  Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
INPP4B MUTATED 1 4 2 2 0 0
INPP4B WILD-TYPE 38 32 35 8 40 24

Figure S185.  Get High-res Image Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'INPP4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S1070.  Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
INPP4B MUTATED 4 1 4 0
INPP4B WILD-TYPE 61 63 36 17
'INPP4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1071.  Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
INPP4B MUTATED 4 4 4
INPP4B WILD-TYPE 75 81 77
'INPP4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0711 (Fisher's exact test), Q value = 1

Table S1072.  Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
INPP4B MUTATED 0 8 4
INPP4B WILD-TYPE 59 99 75
'INPP4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S1073.  Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
INPP4B MUTATED 5 2 4
INPP4B WILD-TYPE 73 69 87
'INPP4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S1074.  Gene #97: 'INPP4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
INPP4B MUTATED 1 3 2 5
INPP4B WILD-TYPE 45 54 64 66
'USP28 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S1075.  Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
USP28 MUTATED 9 0 0 1 0
USP28 WILD-TYPE 147 23 54 6 2
'USP28 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S1076.  Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
USP28 MUTATED 1 0 4
USP28 WILD-TYPE 42 39 49
'USP28 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S1077.  Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
USP28 MUTATED 2 1 2 1 2 1
USP28 WILD-TYPE 37 35 35 9 38 23
'USP28 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1078.  Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
USP28 MUTATED 2 3 3 1
USP28 WILD-TYPE 63 61 37 16
'USP28 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S1079.  Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
USP28 MUTATED 2 6 2
USP28 WILD-TYPE 77 79 79
'USP28 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S1080.  Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
USP28 MUTATED 1 5 4
USP28 WILD-TYPE 58 102 75
'USP28 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1081.  Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
USP28 MUTATED 3 3 4
USP28 WILD-TYPE 75 68 87
'USP28 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0596 (Fisher's exact test), Q value = 1

Table S1082.  Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
USP28 MUTATED 1 3 0 6
USP28 WILD-TYPE 45 54 66 65
'USP28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S1083.  Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
USP28 MUTATED 3 1 0
USP28 WILD-TYPE 52 34 26
'USP28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S1084.  Gene #98: 'USP28 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
USP28 MUTATED 3 0 1
USP28 WILD-TYPE 40 46 26
'EMR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S1085.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
EMR1 MUTATED 2 1 1 0
EMR1 WILD-TYPE 10 17 10 10
'EMR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0918 (Fisher's exact test), Q value = 1

Table S1086.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
EMR1 MUTATED 1 0 2 1 0
EMR1 WILD-TYPE 11 10 5 6 15
'EMR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S1087.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
EMR1 MUTATED 13 0 0 0 0
EMR1 WILD-TYPE 143 23 54 7 2
'EMR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S1088.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
EMR1 MUTATED 2 0 4
EMR1 WILD-TYPE 41 39 49
'EMR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S1089.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
EMR1 MUTATED 4 3 3 1 0 1
EMR1 WILD-TYPE 35 33 34 9 40 23
'EMR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S1090.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
EMR1 MUTATED 3 5 3 1
EMR1 WILD-TYPE 62 59 37 16
'EMR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1091.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
EMR1 MUTATED 4 6 3
EMR1 WILD-TYPE 75 79 78
'EMR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S1092.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
EMR1 MUTATED 1 8 4
EMR1 WILD-TYPE 58 99 75
'EMR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S1093.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
EMR1 MUTATED 5 2 5
EMR1 WILD-TYPE 73 69 86
'EMR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S1094.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
EMR1 MUTATED 2 3 1 6
EMR1 WILD-TYPE 44 54 65 65
'EMR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1095.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
EMR1 MUTATED 3 1 1
EMR1 WILD-TYPE 52 34 25
'EMR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.042 (Fisher's exact test), Q value = 1

Table S1096.  Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
EMR1 MUTATED 2 0 3
EMR1 WILD-TYPE 41 46 24

Figure S186.  Get High-res Image Gene #99: 'EMR1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZNF385B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S1097.  Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ZNF385B MUTATED 6 0 0 1 0
ZNF385B WILD-TYPE 150 23 54 6 2
'ZNF385B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S1098.  Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF385B MUTATED 1 1 3
ZNF385B WILD-TYPE 42 38 50
'ZNF385B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S1099.  Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF385B MUTATED 2 3 0 1 0 1
ZNF385B WILD-TYPE 37 33 37 9 40 23
'ZNF385B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S1100.  Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF385B MUTATED 3 2 1 1
ZNF385B WILD-TYPE 62 62 39 16
'ZNF385B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S1101.  Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ZNF385B MUTATED 4 2 1
ZNF385B WILD-TYPE 75 83 80
'ZNF385B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S1102.  Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ZNF385B MUTATED 0 5 2
ZNF385B WILD-TYPE 59 102 77
'ZNF385B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S1103.  Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ZNF385B MUTATED 3 1 2
ZNF385B WILD-TYPE 75 70 89
'ZNF385B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S1104.  Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ZNF385B MUTATED 1 2 1 2
ZNF385B WILD-TYPE 45 55 65 69
'ZNF385B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S1105.  Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ZNF385B MUTATED 2 0 1
ZNF385B WILD-TYPE 53 35 25
'ZNF385B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1106.  Gene #100: 'ZNF385B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ZNF385B MUTATED 1 1 1
ZNF385B WILD-TYPE 42 45 26
'RAE1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S1107.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
RAE1 MUTATED 1 3 0 0
RAE1 WILD-TYPE 11 15 11 10
'RAE1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0776 (Fisher's exact test), Q value = 1

Table S1108.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
RAE1 MUTATED 3 0 1 0 0
RAE1 WILD-TYPE 9 10 6 7 15
'RAE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0719 (Fisher's exact test), Q value = 1

Table S1109.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
RAE1 MUTATED 8 0 1 2 0
RAE1 WILD-TYPE 148 23 53 5 2
'RAE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S1110.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
RAE1 MUTATED 1 0 4
RAE1 WILD-TYPE 42 39 49
'RAE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S1111.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RAE1 MUTATED 1 3 3 1 0 1
RAE1 WILD-TYPE 38 33 34 9 40 23
'RAE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S1112.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RAE1 MUTATED 3 1 4 1
RAE1 WILD-TYPE 62 63 36 16
'RAE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S1113.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
RAE1 MUTATED 5 4 2
RAE1 WILD-TYPE 74 81 79
'RAE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S1114.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
RAE1 MUTATED 2 7 2
RAE1 WILD-TYPE 57 100 77
'RAE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S1115.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
RAE1 MUTATED 4 4 2
RAE1 WILD-TYPE 74 67 89
'RAE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S1116.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
RAE1 MUTATED 0 4 1 5
RAE1 WILD-TYPE 46 53 65 66
'RAE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S1117.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
RAE1 MUTATED 2 2 1
RAE1 WILD-TYPE 53 33 25
'RAE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S1118.  Gene #101: 'RAE1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
RAE1 MUTATED 2 1 2
RAE1 WILD-TYPE 41 45 25
'TRIM59 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 1

Table S1119.  Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
TRIM59 MUTATED 8 0 0 0 1
TRIM59 WILD-TYPE 148 23 54 7 1
'TRIM59 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S1120.  Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
TRIM59 MUTATED 1 2 2
TRIM59 WILD-TYPE 42 37 51
'TRIM59 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S1121.  Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TRIM59 MUTATED 1 1 3 2 1 0
TRIM59 WILD-TYPE 38 35 34 8 39 24
'TRIM59 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S1122.  Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TRIM59 MUTATED 1 4 3 0
TRIM59 WILD-TYPE 64 60 37 17
'TRIM59 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S1123.  Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
TRIM59 MUTATED 3 2 4
TRIM59 WILD-TYPE 76 83 77
'TRIM59 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S1124.  Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
TRIM59 MUTATED 0 5 4
TRIM59 WILD-TYPE 59 102 75
'TRIM59 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S1125.  Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
TRIM59 MUTATED 3 1 4
TRIM59 WILD-TYPE 75 70 87
'TRIM59 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S1126.  Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
TRIM59 MUTATED 0 1 2 5
TRIM59 WILD-TYPE 46 56 64 66
'TRIM59 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S1127.  Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
TRIM59 MUTATED 2 0 2
TRIM59 WILD-TYPE 53 35 24
'TRIM59 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S1128.  Gene #102: 'TRIM59 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
TRIM59 MUTATED 2 0 2
TRIM59 WILD-TYPE 41 46 25
'ZNF721 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1129.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZNF721 MUTATED 1 1 1 0
ZNF721 WILD-TYPE 11 17 10 10
'ZNF721 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0784 (Fisher's exact test), Q value = 1

Table S1130.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZNF721 MUTATED 1 0 2 0 0
ZNF721 WILD-TYPE 11 10 5 7 15
'ZNF721 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 1

Table S1131.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ZNF721 MUTATED 11 0 0 2 0
ZNF721 WILD-TYPE 145 23 54 5 2

Figure S187.  Get High-res Image Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF721 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S1132.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF721 MUTATED 2 1 4
ZNF721 WILD-TYPE 41 38 49
'ZNF721 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0443 (Fisher's exact test), Q value = 1

Table S1133.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF721 MUTATED 4 4 0 1 0 2
ZNF721 WILD-TYPE 35 32 37 9 40 22

Figure S188.  Get High-res Image Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'ZNF721 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S1134.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF721 MUTATED 4 5 1 1
ZNF721 WILD-TYPE 61 59 39 16
'ZNF721 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S1135.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ZNF721 MUTATED 6 4 3
ZNF721 WILD-TYPE 73 81 78
'ZNF721 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S1136.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ZNF721 MUTATED 1 8 4
ZNF721 WILD-TYPE 58 99 75
'ZNF721 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S1137.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ZNF721 MUTATED 6 3 3
ZNF721 WILD-TYPE 72 68 88
'ZNF721 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S1138.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ZNF721 MUTATED 2 3 2 5
ZNF721 WILD-TYPE 44 54 64 66
'ZNF721 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1139.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ZNF721 MUTATED 3 1 1
ZNF721 WILD-TYPE 52 34 25
'ZNF721 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S1140.  Gene #103: 'ZNF721 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ZNF721 MUTATED 1 2 2
ZNF721 WILD-TYPE 42 44 25
'MCTP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S1141.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MCTP1 MUTATED 2 1 0 0
MCTP1 WILD-TYPE 10 17 11 10
'MCTP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S1142.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MCTP1 MUTATED 0 1 1 1 0
MCTP1 WILD-TYPE 12 9 6 6 15
'MCTP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S1143.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
MCTP1 MUTATED 11 0 1 1 0
MCTP1 WILD-TYPE 145 23 53 6 2
'MCTP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S1144.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MCTP1 MUTATED 3 1 2
MCTP1 WILD-TYPE 40 38 51
'MCTP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S1145.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MCTP1 MUTATED 5 2 2 1 1 0
MCTP1 WILD-TYPE 34 34 35 9 39 24
'MCTP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S1146.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MCTP1 MUTATED 4 4 3 0
MCTP1 WILD-TYPE 61 60 37 17
'MCTP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S1147.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
MCTP1 MUTATED 6 4 3
MCTP1 WILD-TYPE 73 81 78
'MCTP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S1148.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
MCTP1 MUTATED 2 8 3
MCTP1 WILD-TYPE 57 99 76
'MCTP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S1149.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
MCTP1 MUTATED 7 2 3
MCTP1 WILD-TYPE 71 69 88
'MCTP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S1150.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
MCTP1 MUTATED 2 3 2 5
MCTP1 WILD-TYPE 44 54 64 66
'MCTP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S1151.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
MCTP1 MUTATED 1 1 2
MCTP1 WILD-TYPE 54 34 24
'MCTP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0378 (Fisher's exact test), Q value = 1

Table S1152.  Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
MCTP1 MUTATED 1 0 3
MCTP1 WILD-TYPE 42 46 24

Figure S189.  Get High-res Image Gene #104: 'MCTP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZNF774 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S1153.  Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ZNF774 MUTATED 9 0 1 0 0
ZNF774 WILD-TYPE 147 23 53 7 2
'ZNF774 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S1154.  Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF774 MUTATED 3 1 2
ZNF774 WILD-TYPE 40 38 51
'ZNF774 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S1155.  Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF774 MUTATED 4 1 1 1 2 0
ZNF774 WILD-TYPE 35 35 36 9 38 24
'ZNF774 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S1156.  Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF774 MUTATED 3 4 2 0
ZNF774 WILD-TYPE 62 60 38 17
'ZNF774 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S1157.  Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ZNF774 MUTATED 3 5 2
ZNF774 WILD-TYPE 76 80 79
'ZNF774 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S1158.  Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ZNF774 MUTATED 2 6 2
ZNF774 WILD-TYPE 57 101 77
'ZNF774 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S1159.  Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ZNF774 MUTATED 5 3 2
ZNF774 WILD-TYPE 73 68 89
'ZNF774 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S1160.  Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ZNF774 MUTATED 1 3 1 5
ZNF774 WILD-TYPE 45 54 65 66
'ZNF774 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S1161.  Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ZNF774 MUTATED 2 2 2
ZNF774 WILD-TYPE 53 33 24
'ZNF774 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S1162.  Gene #105: 'ZNF774 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ZNF774 MUTATED 2 1 3
ZNF774 WILD-TYPE 41 45 24
'FAM9A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S1163.  Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
FAM9A MUTATED 10 0 3 1 0
FAM9A WILD-TYPE 146 23 51 6 2
'FAM9A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0679 (Fisher's exact test), Q value = 1

Table S1164.  Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
FAM9A MUTATED 5 0 5
FAM9A WILD-TYPE 38 39 48
'FAM9A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S1165.  Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
FAM9A MUTATED 3 5 2 0 0 1
FAM9A WILD-TYPE 36 31 35 10 40 23
'FAM9A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S1166.  Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
FAM9A MUTATED 6 3 1 1
FAM9A WILD-TYPE 59 61 39 16
'FAM9A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0725 (Fisher's exact test), Q value = 1

Table S1167.  Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
FAM9A MUTATED 7 6 1
FAM9A WILD-TYPE 72 79 80
'FAM9A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S1168.  Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
FAM9A MUTATED 5 7 2
FAM9A WILD-TYPE 54 100 77
'FAM9A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S1169.  Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
FAM9A MUTATED 5 5 4
FAM9A WILD-TYPE 73 66 87
'FAM9A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S1170.  Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
FAM9A MUTATED 2 6 1 5
FAM9A WILD-TYPE 44 51 65 66
'FAM9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 1

Table S1171.  Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
FAM9A MUTATED 2 6 0
FAM9A WILD-TYPE 53 29 26

Figure S190.  Get High-res Image Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

'FAM9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0187 (Fisher's exact test), Q value = 1

Table S1172.  Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
FAM9A MUTATED 4 0 4
FAM9A WILD-TYPE 39 46 23

Figure S191.  Get High-res Image Gene #106: 'FAM9A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CFP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S1173.  Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
CFP MUTATED 7 0 0 1 0
CFP WILD-TYPE 149 23 54 6 2
'CFP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1174.  Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CFP MUTATED 2 1 2
CFP WILD-TYPE 41 38 51
'CFP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S1175.  Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CFP MUTATED 2 0 0 1 2 0
CFP WILD-TYPE 37 36 37 9 38 24
'CFP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S1176.  Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CFP MUTATED 2 3 0 0
CFP WILD-TYPE 63 61 40 17
'CFP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S1177.  Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
CFP MUTATED 4 3 1
CFP WILD-TYPE 75 82 80
'CFP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1178.  Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
CFP MUTATED 2 4 2
CFP WILD-TYPE 57 103 77
'CFP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1179.  Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
CFP MUTATED 3 3 2
CFP WILD-TYPE 75 68 89
'CFP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S1180.  Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
CFP MUTATED 1 2 1 4
CFP WILD-TYPE 45 55 65 67
'CFP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S1181.  Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
CFP MUTATED 1 3 1
CFP WILD-TYPE 54 32 25
'CFP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S1182.  Gene #107: 'CFP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
CFP MUTATED 2 1 2
CFP WILD-TYPE 41 45 25
'PER3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 1

Table S1183.  Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
PER3 MUTATED 10 0 0 2 0
PER3 WILD-TYPE 146 23 54 5 2

Figure S192.  Get High-res Image Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PER3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S1184.  Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PER3 MUTATED 2 0 5
PER3 WILD-TYPE 41 39 48
'PER3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S1185.  Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PER3 MUTATED 3 5 2 0 0 1
PER3 WILD-TYPE 36 31 35 10 40 23
'PER3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S1186.  Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PER3 MUTATED 4 5 1 1
PER3 WILD-TYPE 61 59 39 16
'PER3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0748 (Fisher's exact test), Q value = 1

Table S1187.  Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
PER3 MUTATED 7 4 1
PER3 WILD-TYPE 72 81 80
'PER3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S1188.  Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
PER3 MUTATED 1 9 2
PER3 WILD-TYPE 58 98 77
'PER3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S1189.  Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
PER3 MUTATED 5 3 3
PER3 WILD-TYPE 73 68 88
'PER3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S1190.  Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
PER3 MUTATED 1 3 1 6
PER3 WILD-TYPE 45 54 65 65
'PER3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S1191.  Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
PER3 MUTATED 2 2 1
PER3 WILD-TYPE 53 33 25
'PER3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00536 (Fisher's exact test), Q value = 1

Table S1192.  Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
PER3 MUTATED 1 0 4
PER3 WILD-TYPE 42 46 23

Figure S193.  Get High-res Image Gene #108: 'PER3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZRANB3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S1193.  Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZRANB3 MUTATED 1 2 0 0
ZRANB3 WILD-TYPE 11 16 11 10
'ZRANB3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S1194.  Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZRANB3 MUTATED 2 0 0 1 0
ZRANB3 WILD-TYPE 10 10 7 6 15
'ZRANB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S1195.  Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ZRANB3 MUTATED 7 0 0 1 0
ZRANB3 WILD-TYPE 149 23 54 6 2
'ZRANB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S1196.  Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZRANB3 MUTATED 1 3 1 1 1 0
ZRANB3 WILD-TYPE 38 33 36 9 39 24
'ZRANB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S1197.  Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZRANB3 MUTATED 4 1 2 0
ZRANB3 WILD-TYPE 61 63 38 17
'ZRANB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0934 (Fisher's exact test), Q value = 1

Table S1198.  Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ZRANB3 MUTATED 3 5 0
ZRANB3 WILD-TYPE 76 80 81
'ZRANB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.023 (Fisher's exact test), Q value = 1

Table S1199.  Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ZRANB3 MUTATED 1 7 0
ZRANB3 WILD-TYPE 58 100 79

Figure S194.  Get High-res Image Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZRANB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0563 (Fisher's exact test), Q value = 1

Table S1200.  Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ZRANB3 MUTATED 4 3 0
ZRANB3 WILD-TYPE 74 68 91
'ZRANB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0696 (Fisher's exact test), Q value = 1

Table S1201.  Gene #109: 'ZRANB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ZRANB3 MUTATED 0 3 0 4
ZRANB3 WILD-TYPE 46 54 66 67
'OMA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 1

Table S1202.  Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
OMA1 MUTATED 7 0 0 2 0
OMA1 WILD-TYPE 149 23 54 5 2

Figure S195.  Get High-res Image Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OMA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S1203.  Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
OMA1 MUTATED 1 1 4
OMA1 WILD-TYPE 42 38 49
'OMA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S1204.  Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
OMA1 MUTATED 4 2 1 1 0 1
OMA1 WILD-TYPE 35 34 36 9 40 23
'OMA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S1205.  Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
OMA1 MUTATED 3 4 1 1
OMA1 WILD-TYPE 62 60 39 16
'OMA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1206.  Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
OMA1 MUTATED 3 4 3
OMA1 WILD-TYPE 76 81 78
'OMA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S1207.  Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
OMA1 MUTATED 0 6 4
OMA1 WILD-TYPE 59 101 75
'OMA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S1208.  Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
OMA1 MUTATED 4 1 5
OMA1 WILD-TYPE 74 70 86
'OMA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S1209.  Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
OMA1 MUTATED 2 0 3 5
OMA1 WILD-TYPE 44 57 63 66
'OMA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S1210.  Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
OMA1 MUTATED 4 0 1
OMA1 WILD-TYPE 51 35 25
'OMA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S1211.  Gene #110: 'OMA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
OMA1 MUTATED 1 2 2
OMA1 WILD-TYPE 42 44 25
'CLDN15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S1212.  Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
CLDN15 MUTATED 5 0 0 0 0
CLDN15 WILD-TYPE 151 23 54 7 2
'CLDN15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S1213.  Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CLDN15 MUTATED 0 1 3
CLDN15 WILD-TYPE 43 38 50
'CLDN15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S1214.  Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CLDN15 MUTATED 1 1 2 0 0 0
CLDN15 WILD-TYPE 38 35 35 10 40 24
'CLDN15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S1215.  Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CLDN15 MUTATED 1 1 2 0
CLDN15 WILD-TYPE 64 63 38 17
'CLDN15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S1216.  Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
CLDN15 MUTATED 0 4 1
CLDN15 WILD-TYPE 79 81 80
'CLDN15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S1217.  Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
CLDN15 MUTATED 0 4 1
CLDN15 WILD-TYPE 59 103 78
'CLDN15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S1218.  Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
CLDN15 MUTATED 3 0 2
CLDN15 WILD-TYPE 75 71 89
'CLDN15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0604 (Fisher's exact test), Q value = 1

Table S1219.  Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
CLDN15 MUTATED 1 0 0 4
CLDN15 WILD-TYPE 45 57 66 67
'CLDN15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S1220.  Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
CLDN15 MUTATED 1 1 1
CLDN15 WILD-TYPE 54 34 25
'CLDN15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S1221.  Gene #111: 'CLDN15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
CLDN15 MUTATED 1 0 2
CLDN15 WILD-TYPE 42 46 25
'TTC39C MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S1222.  Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
TTC39C MUTATED 1 2 0 0
TTC39C WILD-TYPE 11 16 11 10
'TTC39C MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S1223.  Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
TTC39C MUTATED 2 0 0 1 0
TTC39C WILD-TYPE 10 10 7 6 15
'TTC39C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S1224.  Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
TTC39C MUTATED 6 0 0 1 0
TTC39C WILD-TYPE 150 23 54 6 2
'TTC39C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0862 (Fisher's exact test), Q value = 1

Table S1225.  Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TTC39C MUTATED 1 4 1 1 0 0
TTC39C WILD-TYPE 38 32 36 9 40 24
'TTC39C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S1226.  Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TTC39C MUTATED 4 1 2 0
TTC39C WILD-TYPE 61 63 38 17
'TTC39C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S1227.  Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
TTC39C MUTATED 2 4 1
TTC39C WILD-TYPE 77 81 80
'TTC39C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0943 (Fisher's exact test), Q value = 1

Table S1228.  Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
TTC39C MUTATED 0 6 1
TTC39C WILD-TYPE 59 101 78
'TTC39C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S1229.  Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
TTC39C MUTATED 4 1 1
TTC39C WILD-TYPE 74 70 90
'TTC39C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S1230.  Gene #112: 'TTC39C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
TTC39C MUTATED 0 2 1 3
TTC39C WILD-TYPE 46 55 65 68
'TXNRD1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S1231.  Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
TXNRD1 MUTATED 1 2 0 0
TXNRD1 WILD-TYPE 11 16 11 10
'TXNRD1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S1232.  Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
TXNRD1 MUTATED 2 0 0 1 0
TXNRD1 WILD-TYPE 10 10 7 6 15
'TXNRD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S1233.  Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
TXNRD1 MUTATED 6 0 1 1 0
TXNRD1 WILD-TYPE 150 23 53 6 2
'TXNRD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S1234.  Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
TXNRD1 MUTATED 1 0 3
TXNRD1 WILD-TYPE 42 39 50
'TXNRD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S1235.  Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TXNRD1 MUTATED 1 4 2 0 1 0
TXNRD1 WILD-TYPE 38 32 35 10 39 24
'TXNRD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S1236.  Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TXNRD1 MUTATED 4 2 2 0
TXNRD1 WILD-TYPE 61 62 38 17
'TXNRD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S1237.  Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
TXNRD1 MUTATED 4 3 1
TXNRD1 WILD-TYPE 75 82 80
'TXNRD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S1238.  Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
TXNRD1 MUTATED 2 5 1
TXNRD1 WILD-TYPE 57 102 78
'TXNRD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S1239.  Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
TXNRD1 MUTATED 5 2 1
TXNRD1 WILD-TYPE 73 69 90
'TXNRD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0351 (Fisher's exact test), Q value = 1

Table S1240.  Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
TXNRD1 MUTATED 0 3 0 5
TXNRD1 WILD-TYPE 46 54 66 66

Figure S196.  Get High-res Image Gene #113: 'TXNRD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MECOM MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S1241.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MECOM MUTATED 2 2 0 0
MECOM WILD-TYPE 10 16 11 10
'MECOM MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.047 (Fisher's exact test), Q value = 1

Table S1242.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MECOM MUTATED 2 0 0 2 0
MECOM WILD-TYPE 10 10 7 5 15

Figure S197.  Get High-res Image Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MECOM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S1243.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
MECOM MUTATED 11 1 0 0 0
MECOM WILD-TYPE 145 22 54 7 2
'MECOM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S1244.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MECOM MUTATED 1 2 4
MECOM WILD-TYPE 42 37 49
'MECOM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S1245.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MECOM MUTATED 2 1 1 0 5 2
MECOM WILD-TYPE 37 35 36 10 35 22
'MECOM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0933 (Fisher's exact test), Q value = 1

Table S1246.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MECOM MUTATED 2 5 1 3
MECOM WILD-TYPE 63 59 39 14
'MECOM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S1247.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
MECOM MUTATED 2 5 4
MECOM WILD-TYPE 77 80 77
'MECOM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S1248.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
MECOM MUTATED 1 5 5
MECOM WILD-TYPE 58 102 74
'MECOM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S1249.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
MECOM MUTATED 4 1 6
MECOM WILD-TYPE 74 70 85
'MECOM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S1250.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
MECOM MUTATED 2 2 3 4
MECOM WILD-TYPE 44 55 63 67
'MECOM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S1251.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
MECOM MUTATED 6 1 0
MECOM WILD-TYPE 49 34 26
'MECOM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S1252.  Gene #114: 'MECOM MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
MECOM MUTATED 2 4 1
MECOM WILD-TYPE 41 42 26
'CCDC147 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S1253.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CCDC147 MUTATED 2 1 1 0
CCDC147 WILD-TYPE 10 17 10 10
'CCDC147 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0922 (Fisher's exact test), Q value = 1

Table S1254.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CCDC147 MUTATED 1 0 2 1 0
CCDC147 WILD-TYPE 11 10 5 6 15
'CCDC147 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0459 (Fisher's exact test), Q value = 1

Table S1255.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
CCDC147 MUTATED 14 0 0 1 0
CCDC147 WILD-TYPE 142 23 54 6 2

Figure S198.  Get High-res Image Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC147 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S1256.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CCDC147 MUTATED 3 1 4
CCDC147 WILD-TYPE 40 38 49
'CCDC147 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S1257.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CCDC147 MUTATED 5 4 2 1 0 1
CCDC147 WILD-TYPE 34 32 35 9 40 23
'CCDC147 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S1258.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CCDC147 MUTATED 6 4 2 1
CCDC147 WILD-TYPE 59 60 38 16
'CCDC147 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S1259.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
CCDC147 MUTATED 6 6 3
CCDC147 WILD-TYPE 73 79 78
'CCDC147 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S1260.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
CCDC147 MUTATED 2 9 4
CCDC147 WILD-TYPE 57 98 75
'CCDC147 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S1261.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
CCDC147 MUTATED 6 4 4
CCDC147 WILD-TYPE 72 67 87
'CCDC147 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S1262.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
CCDC147 MUTATED 2 4 1 7
CCDC147 WILD-TYPE 44 53 65 64
'CCDC147 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1263.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
CCDC147 MUTATED 3 2 1
CCDC147 WILD-TYPE 52 33 25
'CCDC147 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.052 (Fisher's exact test), Q value = 1

Table S1264.  Gene #115: 'CCDC147 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
CCDC147 MUTATED 3 0 3
CCDC147 WILD-TYPE 40 46 24
'SACS MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 1

Table S1265.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
SACS MUTATED 6 3 1 0
SACS WILD-TYPE 6 15 10 10

Figure S199.  Get High-res Image Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

'SACS MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00149 (Fisher's exact test), Q value = 1

Table S1266.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
SACS MUTATED 2 1 2 5 0
SACS WILD-TYPE 10 9 5 2 15

Figure S200.  Get High-res Image Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'SACS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00195 (Fisher's exact test), Q value = 1

Table S1267.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
SACS MUTATED 22 0 1 3 0
SACS WILD-TYPE 134 23 53 4 2

Figure S201.  Get High-res Image Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SACS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1268.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SACS MUTATED 2 2 5
SACS WILD-TYPE 41 37 48
'SACS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0794 (Fisher's exact test), Q value = 1

Table S1269.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SACS MUTATED 5 5 4 4 2 1
SACS WILD-TYPE 34 31 33 6 38 23
'SACS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S1270.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SACS MUTATED 6 7 7 1
SACS WILD-TYPE 59 57 33 16
'SACS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S1271.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
SACS MUTATED 7 12 6
SACS WILD-TYPE 72 73 75
'SACS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S1272.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
SACS MUTATED 4 16 5
SACS WILD-TYPE 55 91 74
'SACS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S1273.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
SACS MUTATED 12 5 7
SACS WILD-TYPE 66 66 84
'SACS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S1274.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
SACS MUTATED 3 5 5 11
SACS WILD-TYPE 43 52 61 60
'SACS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S1275.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
SACS MUTATED 7 1 1
SACS WILD-TYPE 48 34 25
'SACS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S1276.  Gene #116: 'SACS MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
SACS MUTATED 2 4 3
SACS WILD-TYPE 41 42 24
'MUTED MUTATION STATUS' versus 'CN_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S1277.  Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
MUTED MUTATED 6 0 0 1 0
MUTED WILD-TYPE 150 23 54 6 2
'MUTED MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S1278.  Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MUTED MUTATED 0 1 2
MUTED WILD-TYPE 43 38 51
'MUTED MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0275 (Fisher's exact test), Q value = 1

Table S1279.  Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MUTED MUTATED 0 2 1 2 0 1
MUTED WILD-TYPE 39 34 36 8 40 23

Figure S202.  Get High-res Image Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'MUTED MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0794 (Fisher's exact test), Q value = 1

Table S1280.  Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MUTED MUTATED 2 0 3 1
MUTED WILD-TYPE 63 64 37 16
'MUTED MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S1281.  Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
MUTED MUTATED 1 3 3
MUTED WILD-TYPE 78 82 78
'MUTED MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S1282.  Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
MUTED MUTATED 0 3 4
MUTED WILD-TYPE 59 104 75
'MUTED MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S1283.  Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
MUTED MUTATED 1 1 4
MUTED WILD-TYPE 77 70 87
'MUTED MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1284.  Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
MUTED MUTATED 1 1 2 2
MUTED WILD-TYPE 45 56 64 69
'MUTED MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S1285.  Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
MUTED MUTATED 3 0 0
MUTED WILD-TYPE 52 35 26
'MUTED MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S1286.  Gene #117: 'MUTED MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
MUTED MUTATED 2 1 0
MUTED WILD-TYPE 41 45 27
'SLC44A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S1287.  Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
SLC44A3 MUTATED 5 0 0 1 0
SLC44A3 WILD-TYPE 151 23 54 6 2
'SLC44A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S1288.  Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SLC44A3 MUTATED 1 2 1
SLC44A3 WILD-TYPE 42 37 52
'SLC44A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S1289.  Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SLC44A3 MUTATED 2 1 1 1 1 0
SLC44A3 WILD-TYPE 37 35 36 9 39 24
'SLC44A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S1290.  Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SLC44A3 MUTATED 1 4 1 0
SLC44A3 WILD-TYPE 64 60 39 17
'SLC44A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1291.  Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
SLC44A3 MUTATED 2 2 2
SLC44A3 WILD-TYPE 77 83 79
'SLC44A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S1292.  Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
SLC44A3 MUTATED 0 4 2
SLC44A3 WILD-TYPE 59 103 77
'SLC44A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S1293.  Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
SLC44A3 MUTATED 3 1 2
SLC44A3 WILD-TYPE 75 70 89
'SLC44A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S1294.  Gene #118: 'SLC44A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
SLC44A3 MUTATED 0 1 2 3
SLC44A3 WILD-TYPE 46 56 64 68
'ZNF674 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 1

Table S1295.  Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ZNF674 MUTATED 11 0 1 2 0
ZNF674 WILD-TYPE 145 23 53 5 2
'ZNF674 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S1296.  Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF674 MUTATED 2 1 3
ZNF674 WILD-TYPE 41 38 50
'ZNF674 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0675 (Fisher's exact test), Q value = 1

Table S1297.  Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF674 MUTATED 3 5 1 2 1 0
ZNF674 WILD-TYPE 36 31 36 8 39 24
'ZNF674 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S1298.  Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF674 MUTATED 4 5 3 0
ZNF674 WILD-TYPE 61 59 37 17
'ZNF674 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S1299.  Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ZNF674 MUTATED 7 5 2
ZNF674 WILD-TYPE 72 80 79
'ZNF674 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S1300.  Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ZNF674 MUTATED 2 10 2
ZNF674 WILD-TYPE 57 97 77
'ZNF674 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S1301.  Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ZNF674 MUTATED 7 4 2
ZNF674 WILD-TYPE 71 67 89
'ZNF674 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S1302.  Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ZNF674 MUTATED 1 4 1 7
ZNF674 WILD-TYPE 45 53 65 64
'ZNF674 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1303.  Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ZNF674 MUTATED 2 1 1
ZNF674 WILD-TYPE 53 34 25
'ZNF674 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S1304.  Gene #119: 'ZNF674 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ZNF674 MUTATED 1 1 2
ZNF674 WILD-TYPE 42 45 25
'CCDC144A MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S1305.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CCDC144A MUTATED 2 2 1 0
CCDC144A WILD-TYPE 10 16 10 10
'CCDC144A MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0942 (Fisher's exact test), Q value = 1

Table S1306.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CCDC144A MUTATED 2 0 2 1 0
CCDC144A WILD-TYPE 10 10 5 6 15
'CCDC144A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0416 (Fisher's exact test), Q value = 1

Table S1307.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
CCDC144A MUTATED 15 0 1 2 0
CCDC144A WILD-TYPE 141 23 53 5 2

Figure S203.  Get High-res Image Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC144A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S1308.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CCDC144A MUTATED 3 1 5
CCDC144A WILD-TYPE 40 38 48
'CCDC144A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S1309.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CCDC144A MUTATED 4 4 4 2 1 0
CCDC144A WILD-TYPE 35 32 33 8 39 24
'CCDC144A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S1310.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CCDC144A MUTATED 5 6 4 0
CCDC144A WILD-TYPE 60 58 36 17
'CCDC144A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S1311.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
CCDC144A MUTATED 7 7 4
CCDC144A WILD-TYPE 72 78 77
'CCDC144A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S1312.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
CCDC144A MUTATED 2 12 4
CCDC144A WILD-TYPE 57 95 75
'CCDC144A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S1313.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
CCDC144A MUTATED 9 4 4
CCDC144A WILD-TYPE 69 67 87
'CCDC144A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S1314.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
CCDC144A MUTATED 2 5 2 8
CCDC144A WILD-TYPE 44 52 64 63
'CCDC144A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1315.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
CCDC144A MUTATED 4 1 2
CCDC144A WILD-TYPE 51 34 24
'CCDC144A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S1316.  Gene #120: 'CCDC144A MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
CCDC144A MUTATED 2 2 3
CCDC144A WILD-TYPE 41 44 24
'OR8B8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0311 (Fisher's exact test), Q value = 1

Table S1317.  Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
OR8B8 MUTATED 5 0 0 2 0
OR8B8 WILD-TYPE 151 23 54 5 2

Figure S204.  Get High-res Image Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'OR8B8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1318.  Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
OR8B8 MUTATED 1 0 2
OR8B8 WILD-TYPE 42 39 51
'OR8B8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S1319.  Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
OR8B8 MUTATED 2 3 1 0 0 0
OR8B8 WILD-TYPE 37 33 36 10 40 24
'OR8B8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S1320.  Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
OR8B8 MUTATED 2 3 1 0
OR8B8 WILD-TYPE 63 61 39 17
'OR8B8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S1321.  Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
OR8B8 MUTATED 4 2 1
OR8B8 WILD-TYPE 75 83 80
'OR8B8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S1322.  Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
OR8B8 MUTATED 2 4 1
OR8B8 WILD-TYPE 57 103 78
'OR8B8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S1323.  Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
OR8B8 MUTATED 3 3 1
OR8B8 WILD-TYPE 75 68 90
'OR8B8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S1324.  Gene #121: 'OR8B8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
OR8B8 MUTATED 1 2 0 4
OR8B8 WILD-TYPE 45 55 66 67
'LNX2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S1325.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
LNX2 MUTATED 2 1 0 0
LNX2 WILD-TYPE 10 17 11 10
'LNX2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S1326.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
LNX2 MUTATED 1 0 1 1 0
LNX2 WILD-TYPE 11 10 6 6 15
'LNX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 1

Table S1327.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
LNX2 MUTATED 12 0 0 2 0
LNX2 WILD-TYPE 144 23 54 5 2

Figure S205.  Get High-res Image Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'LNX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00257 (Fisher's exact test), Q value = 1

Table S1328.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
LNX2 MUTATED 0 0 7
LNX2 WILD-TYPE 43 39 46

Figure S206.  Get High-res Image Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'LNX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S1329.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
LNX2 MUTATED 2 4 2 1 2 1
LNX2 WILD-TYPE 37 32 35 9 38 23
'LNX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1330.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
LNX2 MUTATED 4 4 3 1
LNX2 WILD-TYPE 61 60 37 16
'LNX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 1

Table S1331.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
LNX2 MUTATED 4 9 1
LNX2 WILD-TYPE 75 76 80

Figure S207.  Get High-res Image Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LNX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 1

Table S1332.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
LNX2 MUTATED 0 11 3
LNX2 WILD-TYPE 59 96 76

Figure S208.  Get High-res Image Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'LNX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S1333.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
LNX2 MUTATED 8 3 3
LNX2 WILD-TYPE 70 68 88
'LNX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S1334.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
LNX2 MUTATED 3 3 1 7
LNX2 WILD-TYPE 43 54 65 64
'LNX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1335.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
LNX2 MUTATED 2 1 1
LNX2 WILD-TYPE 53 34 25
'LNX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S1336.  Gene #122: 'LNX2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
LNX2 MUTATED 1 1 2
LNX2 WILD-TYPE 42 45 25
'TMEM62 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S1337.  Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
TMEM62 MUTATED 8 0 0 1 0
TMEM62 WILD-TYPE 148 23 54 6 2
'TMEM62 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S1338.  Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
TMEM62 MUTATED 1 0 2
TMEM62 WILD-TYPE 42 39 51
'TMEM62 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S1339.  Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TMEM62 MUTATED 3 1 2 0 0 1
TMEM62 WILD-TYPE 36 35 35 10 40 23
'TMEM62 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S1340.  Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TMEM62 MUTATED 2 3 1 1
TMEM62 WILD-TYPE 63 61 39 16
'TMEM62 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S1341.  Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
TMEM62 MUTATED 2 6 1
TMEM62 WILD-TYPE 77 79 80
'TMEM62 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S1342.  Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
TMEM62 MUTATED 0 7 2
TMEM62 WILD-TYPE 59 100 77
'TMEM62 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S1343.  Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
TMEM62 MUTATED 3 1 4
TMEM62 WILD-TYPE 75 70 87
'TMEM62 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S1344.  Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
TMEM62 MUTATED 2 0 1 5
TMEM62 WILD-TYPE 44 57 65 66
'TMEM62 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S1345.  Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
TMEM62 MUTATED 2 0 1
TMEM62 WILD-TYPE 53 35 25
'TMEM62 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1346.  Gene #123: 'TMEM62 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
TMEM62 MUTATED 1 1 1
TMEM62 WILD-TYPE 42 45 26
'ATF7IP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S1347.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ATF7IP MUTATED 2 0 1 0
ATF7IP WILD-TYPE 10 18 10 10
'ATF7IP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0234 (Fisher's exact test), Q value = 1

Table S1348.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ATF7IP MUTATED 0 0 2 1 0
ATF7IP WILD-TYPE 12 10 5 6 15

Figure S209.  Get High-res Image Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ATF7IP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 1

Table S1349.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ATF7IP MUTATED 13 1 0 2 0
ATF7IP WILD-TYPE 143 22 54 5 2

Figure S210.  Get High-res Image Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ATF7IP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0934 (Fisher's exact test), Q value = 1

Table S1350.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ATF7IP MUTATED 2 1 8
ATF7IP WILD-TYPE 41 38 45
'ATF7IP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S1351.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ATF7IP MUTATED 2 5 2 0 3 1
ATF7IP WILD-TYPE 37 31 35 10 37 23
'ATF7IP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S1352.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ATF7IP MUTATED 5 5 2 1
ATF7IP WILD-TYPE 60 59 38 16
'ATF7IP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S1353.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ATF7IP MUTATED 7 4 5
ATF7IP WILD-TYPE 72 81 76
'ATF7IP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S1354.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ATF7IP MUTATED 2 8 6
ATF7IP WILD-TYPE 57 99 73
'ATF7IP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1355.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ATF7IP MUTATED 6 5 6
ATF7IP WILD-TYPE 72 66 85
'ATF7IP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S1356.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ATF7IP MUTATED 2 4 2 9
ATF7IP WILD-TYPE 44 53 64 62
'ATF7IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S1357.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ATF7IP MUTATED 3 4 1
ATF7IP WILD-TYPE 52 31 25
'ATF7IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0266 (Fisher's exact test), Q value = 1

Table S1358.  Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ATF7IP MUTATED 5 0 3
ATF7IP WILD-TYPE 38 46 24

Figure S211.  Get High-res Image Gene #124: 'ATF7IP MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IL20 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S1359.  Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
IL20 MUTATED 3 1 0 0
IL20 WILD-TYPE 9 17 11 10
'IL20 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0929 (Fisher's exact test), Q value = 1

Table S1360.  Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
IL20 MUTATED 1 0 1 2 0
IL20 WILD-TYPE 11 10 6 5 15
'IL20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S1361.  Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
IL20 MUTATED 6 0 0 1 0
IL20 WILD-TYPE 150 23 54 6 2
'IL20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S1362.  Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
IL20 MUTATED 3 1 0 1 1 0
IL20 WILD-TYPE 36 35 37 9 39 24
'IL20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S1363.  Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
IL20 MUTATED 2 3 1 0
IL20 WILD-TYPE 63 61 39 17
'IL20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1364.  Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
IL20 MUTATED 3 3 1
IL20 WILD-TYPE 76 82 80
'IL20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00714 (Fisher's exact test), Q value = 1

Table S1365.  Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
IL20 MUTATED 0 7 0
IL20 WILD-TYPE 59 100 79

Figure S212.  Get High-res Image Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'IL20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S1366.  Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
IL20 MUTATED 4 1 1
IL20 WILD-TYPE 74 70 90
'IL20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0558 (Fisher's exact test), Q value = 1

Table S1367.  Gene #125: 'IL20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
IL20 MUTATED 2 0 0 4
IL20 WILD-TYPE 44 57 66 67
'C3AR1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S1368.  Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
C3AR1 MUTATED 2 1 0 0
C3AR1 WILD-TYPE 10 17 11 10
'C3AR1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S1369.  Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
C3AR1 MUTATED 1 0 1 1 0
C3AR1 WILD-TYPE 11 10 6 6 15
'C3AR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S1370.  Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
C3AR1 MUTATED 8 0 0 0 0
C3AR1 WILD-TYPE 148 23 54 7 2
'C3AR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S1371.  Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
C3AR1 MUTATED 1 1 2 2 1 0
C3AR1 WILD-TYPE 38 35 35 8 39 24
'C3AR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S1372.  Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
C3AR1 MUTATED 1 2 4 0
C3AR1 WILD-TYPE 64 62 36 17
'C3AR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S1373.  Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
C3AR1 MUTATED 1 3 4
C3AR1 WILD-TYPE 78 82 77
'C3AR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S1374.  Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
C3AR1 MUTATED 0 4 4
C3AR1 WILD-TYPE 59 103 75
'C3AR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S1375.  Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
C3AR1 MUTATED 2 1 4
C3AR1 WILD-TYPE 76 70 87
'C3AR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S1376.  Gene #126: 'C3AR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
C3AR1 MUTATED 1 1 1 4
C3AR1 WILD-TYPE 45 56 65 67
'PKD2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1377.  Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
PKD2 MUTATED 1 1 1 0
PKD2 WILD-TYPE 11 17 10 10
'PKD2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S1378.  Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
PKD2 MUTATED 1 0 1 0 1
PKD2 WILD-TYPE 11 10 6 7 14
'PKD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.088 (Fisher's exact test), Q value = 1

Table S1379.  Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
PKD2 MUTATED 5 2 0 1 0
PKD2 WILD-TYPE 151 21 54 6 2
'PKD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S1380.  Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PKD2 MUTATED 1 3 1 1 0 0
PKD2 WILD-TYPE 38 33 36 9 40 24
'PKD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1381.  Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PKD2 MUTATED 2 2 2 0
PKD2 WILD-TYPE 63 62 38 17
'PKD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1382.  Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
PKD2 MUTATED 2 3 3
PKD2 WILD-TYPE 77 82 78
'PKD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S1383.  Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
PKD2 MUTATED 0 5 3
PKD2 WILD-TYPE 59 102 76
'PKD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S1384.  Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
PKD2 MUTATED 3 1 3
PKD2 WILD-TYPE 75 70 88
'PKD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S1385.  Gene #127: 'PKD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
PKD2 MUTATED 2 0 2 3
PKD2 WILD-TYPE 44 57 64 68
'BMP5 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S1386.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
BMP5 MUTATED 2 2 1 0
BMP5 WILD-TYPE 10 16 10 10
'BMP5 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0917 (Fisher's exact test), Q value = 1

Table S1387.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
BMP5 MUTATED 2 0 2 1 0
BMP5 WILD-TYPE 10 10 5 6 15
'BMP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S1388.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
BMP5 MUTATED 9 1 1 2 0
BMP5 WILD-TYPE 147 22 53 5 2
'BMP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1389.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
BMP5 MUTATED 2 1 2
BMP5 WILD-TYPE 41 38 51
'BMP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S1390.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
BMP5 MUTATED 1 2 2 2 1 0
BMP5 WILD-TYPE 38 34 35 8 39 24
'BMP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S1391.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
BMP5 MUTATED 2 2 4 0
BMP5 WILD-TYPE 63 62 36 17
'BMP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S1392.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
BMP5 MUTATED 5 4 4
BMP5 WILD-TYPE 74 81 77
'BMP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S1393.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
BMP5 MUTATED 1 8 4
BMP5 WILD-TYPE 58 99 75
'BMP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S1394.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
BMP5 MUTATED 5 4 3
BMP5 WILD-TYPE 73 67 88
'BMP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S1395.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
BMP5 MUTATED 1 4 2 5
BMP5 WILD-TYPE 45 53 64 66
'BMP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S1396.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
BMP5 MUTATED 2 2 0
BMP5 WILD-TYPE 53 33 26
'BMP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S1397.  Gene #128: 'BMP5 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
BMP5 MUTATED 3 1 0
BMP5 WILD-TYPE 40 45 27
'OR52I2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S1398.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
OR52I2 MUTATED 1 2 0 0
OR52I2 WILD-TYPE 11 16 11 10
'OR52I2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S1399.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
OR52I2 MUTATED 1 1 0 1 0
OR52I2 WILD-TYPE 11 9 7 6 15
'OR52I2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S1400.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
OR52I2 MUTATED 6 0 1 1 0
OR52I2 WILD-TYPE 150 23 53 6 2
'OR52I2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 1

Table S1401.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
OR52I2 MUTATED 0 0 4
OR52I2 WILD-TYPE 43 39 49

Figure S213.  Get High-res Image Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'OR52I2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1402.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
OR52I2 MUTATED 1 3 1 0 1 0
OR52I2 WILD-TYPE 38 33 36 10 39 24
'OR52I2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S1403.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
OR52I2 MUTATED 4 1 1 0
OR52I2 WILD-TYPE 61 63 39 17
'OR52I2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S1404.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
OR52I2 MUTATED 5 1 2
OR52I2 WILD-TYPE 74 84 79
'OR52I2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S1405.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
OR52I2 MUTATED 1 5 2
OR52I2 WILD-TYPE 58 102 77
'OR52I2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S1406.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
OR52I2 MUTATED 2 3 2
OR52I2 WILD-TYPE 76 68 89
'OR52I2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S1407.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
OR52I2 MUTATED 0 2 1 4
OR52I2 WILD-TYPE 46 55 65 67
'OR52I2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1408.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
OR52I2 MUTATED 2 1 0
OR52I2 WILD-TYPE 53 34 26
'OR52I2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1409.  Gene #129: 'OR52I2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
OR52I2 MUTATED 1 1 1
OR52I2 WILD-TYPE 42 45 26
'C1ORF100 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S1410.  Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
C1ORF100 MUTATED 2 1 0 0
C1ORF100 WILD-TYPE 10 17 11 10
'C1ORF100 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S1411.  Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
C1ORF100 MUTATED 1 0 1 1 0
C1ORF100 WILD-TYPE 11 10 6 6 15
'C1ORF100 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00305 (Fisher's exact test), Q value = 1

Table S1412.  Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
C1ORF100 MUTATED 6 0 0 3 0
C1ORF100 WILD-TYPE 150 23 54 4 2

Figure S214.  Get High-res Image Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'C1ORF100 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1413.  Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
C1ORF100 MUTATED 1 1 1
C1ORF100 WILD-TYPE 42 38 52
'C1ORF100 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1414.  Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
C1ORF100 MUTATED 2 3 1 0 1 0
C1ORF100 WILD-TYPE 37 33 36 10 39 24
'C1ORF100 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S1415.  Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
C1ORF100 MUTATED 1 5 1 0
C1ORF100 WILD-TYPE 64 59 39 17
'C1ORF100 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S1416.  Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
C1ORF100 MUTATED 3 5 1
C1ORF100 WILD-TYPE 76 80 80
'C1ORF100 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S1417.  Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
C1ORF100 MUTATED 1 7 1
C1ORF100 WILD-TYPE 58 100 78
'C1ORF100 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S1418.  Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
C1ORF100 MUTATED 6 2 1
C1ORF100 WILD-TYPE 72 69 90
'C1ORF100 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S1419.  Gene #130: 'C1ORF100 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
C1ORF100 MUTATED 1 2 1 5
C1ORF100 WILD-TYPE 45 55 65 66
'CCDC160 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S1420.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CCDC160 MUTATED 1 2 0 0
CCDC160 WILD-TYPE 11 16 11 10
'CCDC160 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S1421.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CCDC160 MUTATED 2 0 0 1 0
CCDC160 WILD-TYPE 10 10 7 6 15
'CCDC160 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S1422.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
CCDC160 MUTATED 10 0 0 1 0
CCDC160 WILD-TYPE 146 23 54 6 2
'CCDC160 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1423.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CCDC160 MUTATED 1 1 2
CCDC160 WILD-TYPE 42 38 51
'CCDC160 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S1424.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CCDC160 MUTATED 2 3 1 1 2 1
CCDC160 WILD-TYPE 37 33 36 9 38 23
'CCDC160 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S1425.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CCDC160 MUTATED 4 2 3 1
CCDC160 WILD-TYPE 61 62 37 16
'CCDC160 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S1426.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
CCDC160 MUTATED 4 5 2
CCDC160 WILD-TYPE 75 80 79
'CCDC160 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S1427.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
CCDC160 MUTATED 1 7 3
CCDC160 WILD-TYPE 58 100 76
'CCDC160 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S1428.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
CCDC160 MUTATED 4 3 3
CCDC160 WILD-TYPE 74 68 88
'CCDC160 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S1429.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
CCDC160 MUTATED 2 2 1 5
CCDC160 WILD-TYPE 44 55 65 66
'CCDC160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S1430.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
CCDC160 MUTATED 3 0 1
CCDC160 WILD-TYPE 52 35 25
'CCDC160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S1431.  Gene #131: 'CCDC160 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
CCDC160 MUTATED 2 1 1
CCDC160 WILD-TYPE 41 45 26
'NAA15 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S1432.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
NAA15 MUTATED 2 2 0 0
NAA15 WILD-TYPE 10 16 11 10
'NAA15 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S1433.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
NAA15 MUTATED 2 0 1 1 0
NAA15 WILD-TYPE 10 10 6 6 15
'NAA15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 1

Table S1434.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
NAA15 MUTATED 11 0 1 2 0
NAA15 WILD-TYPE 145 23 53 5 2
'NAA15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 1

Table S1435.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
NAA15 MUTATED 5 1 1
NAA15 WILD-TYPE 38 38 52
'NAA15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S1436.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
NAA15 MUTATED 5 3 1 2 2 0
NAA15 WILD-TYPE 34 33 36 8 38 24
'NAA15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S1437.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
NAA15 MUTATED 3 7 3 0
NAA15 WILD-TYPE 62 57 37 17
'NAA15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S1438.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
NAA15 MUTATED 8 4 2
NAA15 WILD-TYPE 71 81 79
'NAA15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S1439.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
NAA15 MUTATED 2 10 2
NAA15 WILD-TYPE 57 97 77
'NAA15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S1440.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
NAA15 MUTATED 6 5 2
NAA15 WILD-TYPE 72 66 89
'NAA15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S1441.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
NAA15 MUTATED 1 5 2 5
NAA15 WILD-TYPE 45 52 64 66
'NAA15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S1442.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
NAA15 MUTATED 1 2 3
NAA15 WILD-TYPE 54 33 23
'NAA15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0392 (Fisher's exact test), Q value = 1

Table S1443.  Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
NAA15 MUTATED 1 1 4
NAA15 WILD-TYPE 42 45 23

Figure S215.  Get High-res Image Gene #132: 'NAA15 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RNF31 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S1444.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
RNF31 MUTATED 3 2 1 0
RNF31 WILD-TYPE 9 16 10 10
'RNF31 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.05 (Fisher's exact test), Q value = 1

Table S1445.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
RNF31 MUTATED 2 0 2 2 0
RNF31 WILD-TYPE 10 10 5 5 15
'RNF31 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0374 (Fisher's exact test), Q value = 1

Table S1446.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
RNF31 MUTATED 11 1 2 3 0
RNF31 WILD-TYPE 145 22 52 4 2

Figure S216.  Get High-res Image Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RNF31 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S1447.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
RNF31 MUTATED 4 1 3
RNF31 WILD-TYPE 39 38 50
'RNF31 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0729 (Fisher's exact test), Q value = 1

Table S1448.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RNF31 MUTATED 4 5 0 1 2 0
RNF31 WILD-TYPE 35 31 37 9 38 24
'RNF31 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S1449.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RNF31 MUTATED 4 7 1 0
RNF31 WILD-TYPE 61 57 39 17
'RNF31 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0788 (Fisher's exact test), Q value = 1

Table S1450.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
RNF31 MUTATED 9 6 2
RNF31 WILD-TYPE 70 79 79
'RNF31 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0641 (Fisher's exact test), Q value = 1

Table S1451.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
RNF31 MUTATED 3 12 2
RNF31 WILD-TYPE 56 95 77
'RNF31 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 1

Table S1452.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
RNF31 MUTATED 8 7 1
RNF31 WILD-TYPE 70 64 90

Figure S217.  Get High-res Image Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'RNF31 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.067 (Fisher's exact test), Q value = 1

Table S1453.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
RNF31 MUTATED 3 3 1 9
RNF31 WILD-TYPE 43 54 65 62
'RNF31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S1454.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
RNF31 MUTATED 1 4 2
RNF31 WILD-TYPE 54 31 24
'RNF31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0959 (Fisher's exact test), Q value = 1

Table S1455.  Gene #133: 'RNF31 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
RNF31 MUTATED 2 1 4
RNF31 WILD-TYPE 41 45 23
'NFE2L3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S1456.  Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
NFE2L3 MUTATED 8 0 3 1 0
NFE2L3 WILD-TYPE 148 23 51 6 2
'NFE2L3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0333 (Fisher's exact test), Q value = 1

Table S1457.  Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
NFE2L3 MUTATED 6 0 3
NFE2L3 WILD-TYPE 37 39 50

Figure S218.  Get High-res Image Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'NFE2L3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S1458.  Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
NFE2L3 MUTATED 5 1 1 0 1 1
NFE2L3 WILD-TYPE 34 35 36 10 39 23
'NFE2L3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S1459.  Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
NFE2L3 MUTATED 3 4 1 1
NFE2L3 WILD-TYPE 62 60 39 16
'NFE2L3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0436 (Fisher's exact test), Q value = 1

Table S1460.  Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
NFE2L3 MUTATED 8 2 2
NFE2L3 WILD-TYPE 71 83 79

Figure S219.  Get High-res Image Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'NFE2L3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S1461.  Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
NFE2L3 MUTATED 5 4 3
NFE2L3 WILD-TYPE 54 103 76
'NFE2L3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S1462.  Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
NFE2L3 MUTATED 2 6 3
NFE2L3 WILD-TYPE 76 65 88
'NFE2L3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S1463.  Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
NFE2L3 MUTATED 1 5 1 4
NFE2L3 WILD-TYPE 45 52 65 67
'NFE2L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S1464.  Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
NFE2L3 MUTATED 3 4 1
NFE2L3 WILD-TYPE 52 31 25
'NFE2L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S1465.  Gene #134: 'NFE2L3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
NFE2L3 MUTATED 5 1 2
NFE2L3 WILD-TYPE 38 45 25
'ZKSCAN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S1466.  Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ZKSCAN1 MUTATED 7 0 0 0 0
ZKSCAN1 WILD-TYPE 149 23 54 7 2
'ZKSCAN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S1467.  Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZKSCAN1 MUTATED 2 0 3
ZKSCAN1 WILD-TYPE 41 39 50
'ZKSCAN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S1468.  Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZKSCAN1 MUTATED 3 0 2 1 0 1
ZKSCAN1 WILD-TYPE 36 36 35 9 40 23
'ZKSCAN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S1469.  Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZKSCAN1 MUTATED 2 1 3 1
ZKSCAN1 WILD-TYPE 63 63 37 16
'ZKSCAN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S1470.  Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ZKSCAN1 MUTATED 2 4 1
ZKSCAN1 WILD-TYPE 77 81 80
'ZKSCAN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1471.  Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ZKSCAN1 MUTATED 2 3 2
ZKSCAN1 WILD-TYPE 57 104 77
'ZKSCAN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S1472.  Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ZKSCAN1 MUTATED 2 3 2
ZKSCAN1 WILD-TYPE 76 68 89
'ZKSCAN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S1473.  Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ZKSCAN1 MUTATED 1 4 1 1
ZKSCAN1 WILD-TYPE 45 53 65 70
'ZKSCAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S1474.  Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ZKSCAN1 MUTATED 2 2 1
ZKSCAN1 WILD-TYPE 53 33 25
'ZKSCAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S1475.  Gene #135: 'ZKSCAN1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ZKSCAN1 MUTATED 2 1 2
ZKSCAN1 WILD-TYPE 41 45 25
'CDKL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S1476.  Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
CDKL1 MUTATED 6 0 0 1 0
CDKL1 WILD-TYPE 150 23 54 6 2
'CDKL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S1477.  Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CDKL1 MUTATED 1 2 1
CDKL1 WILD-TYPE 42 37 52
'CDKL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S1478.  Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CDKL1 MUTATED 3 1 2 0 0 0
CDKL1 WILD-TYPE 36 35 35 10 40 24
'CDKL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S1479.  Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CDKL1 MUTATED 2 2 2 0
CDKL1 WILD-TYPE 63 62 38 17
'CDKL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S1480.  Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
CDKL1 MUTATED 3 2 2
CDKL1 WILD-TYPE 76 83 79
'CDKL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S1481.  Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
CDKL1 MUTATED 0 5 2
CDKL1 WILD-TYPE 59 102 77
'CDKL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1482.  Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
CDKL1 MUTATED 3 1 2
CDKL1 WILD-TYPE 75 70 89
'CDKL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S1483.  Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
CDKL1 MUTATED 2 0 1 3
CDKL1 WILD-TYPE 44 57 65 68
'CDKL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S1484.  Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
CDKL1 MUTATED 3 0 1
CDKL1 WILD-TYPE 52 35 25
'CDKL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S1485.  Gene #136: 'CDKL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
CDKL1 MUTATED 2 1 1
CDKL1 WILD-TYPE 41 45 26
'ERBB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0947 (Fisher's exact test), Q value = 1

Table S1486.  Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ERBB3 MUTATED 13 1 1 2 0
ERBB3 WILD-TYPE 143 22 53 5 2
'ERBB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S1487.  Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ERBB3 MUTATED 2 3 6
ERBB3 WILD-TYPE 41 36 47
'ERBB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S1488.  Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ERBB3 MUTATED 2 1 3 2 4 1
ERBB3 WILD-TYPE 37 35 34 8 36 23
'ERBB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S1489.  Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ERBB3 MUTATED 4 4 4 1
ERBB3 WILD-TYPE 61 60 36 16
'ERBB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S1490.  Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ERBB3 MUTATED 5 9 3
ERBB3 WILD-TYPE 74 76 78
'ERBB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S1491.  Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ERBB3 MUTATED 2 11 4
ERBB3 WILD-TYPE 57 96 75
'ERBB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S1492.  Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ERBB3 MUTATED 5 6 6
ERBB3 WILD-TYPE 73 65 85
'ERBB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S1493.  Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ERBB3 MUTATED 3 5 3 6
ERBB3 WILD-TYPE 43 52 63 65
'ERBB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S1494.  Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ERBB3 MUTATED 3 2 3
ERBB3 WILD-TYPE 52 33 23
'ERBB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1495.  Gene #137: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ERBB3 MUTATED 3 3 2
ERBB3 WILD-TYPE 40 43 25
'SELP MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S1496.  Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
SELP MUTATED 2 1 0 0
SELP WILD-TYPE 10 17 11 10
'SELP MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S1497.  Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
SELP MUTATED 1 0 1 1 0
SELP WILD-TYPE 11 10 6 6 15
'SELP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S1498.  Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
SELP MUTATED 7 1 0 1 0
SELP WILD-TYPE 149 22 54 6 2
'SELP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S1499.  Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SELP MUTATED 3 2 0 1 1 0
SELP WILD-TYPE 36 34 37 9 39 24
'SELP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1500.  Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SELP MUTATED 3 3 1 0
SELP WILD-TYPE 62 61 39 17
'SELP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S1501.  Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
SELP MUTATED 4 4 1
SELP WILD-TYPE 75 81 80
'SELP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S1502.  Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
SELP MUTATED 2 6 1
SELP WILD-TYPE 57 101 78
'SELP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S1503.  Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
SELP MUTATED 3 4 1
SELP WILD-TYPE 75 67 90
'SELP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S1504.  Gene #138: 'SELP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
SELP MUTATED 1 2 1 4
SELP WILD-TYPE 45 55 65 67
'PPIG MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S1505.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
PPIG MUTATED 3 2 0 0
PPIG WILD-TYPE 9 16 11 10
'PPIG MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0916 (Fisher's exact test), Q value = 1

Table S1506.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
PPIG MUTATED 2 0 1 2 0
PPIG WILD-TYPE 10 10 6 5 15
'PPIG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.046 (Fisher's exact test), Q value = 1

Table S1507.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
PPIG MUTATED 16 0 0 0 0
PPIG WILD-TYPE 140 23 54 7 2

Figure S220.  Get High-res Image Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PPIG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1508.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PPIG MUTATED 3 2 4
PPIG WILD-TYPE 40 37 49
'PPIG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S1509.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PPIG MUTATED 4 3 5 0 2 1
PPIG WILD-TYPE 35 33 32 10 38 23
'PPIG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S1510.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PPIG MUTATED 5 5 4 1
PPIG WILD-TYPE 60 59 36 16
'PPIG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S1511.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
PPIG MUTATED 6 8 2
PPIG WILD-TYPE 73 77 79
'PPIG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S1512.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
PPIG MUTATED 2 11 3
PPIG WILD-TYPE 57 96 76
'PPIG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S1513.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
PPIG MUTATED 8 3 4
PPIG WILD-TYPE 70 68 87
'PPIG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S1514.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
PPIG MUTATED 2 5 2 6
PPIG WILD-TYPE 44 52 64 65
'PPIG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1515.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
PPIG MUTATED 4 3 2
PPIG WILD-TYPE 51 32 24
'PPIG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S1516.  Gene #139: 'PPIG MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
PPIG MUTATED 4 1 4
PPIG WILD-TYPE 39 45 23
'GPRASP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S1517.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
GPRASP1 MUTATED 3 1 1 0
GPRASP1 WILD-TYPE 9 17 10 10
'GPRASP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0448 (Fisher's exact test), Q value = 1

Table S1518.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
GPRASP1 MUTATED 1 0 2 2 0
GPRASP1 WILD-TYPE 11 10 5 5 15

Figure S221.  Get High-res Image Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'GPRASP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0526 (Fisher's exact test), Q value = 1

Table S1519.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
GPRASP1 MUTATED 19 0 1 1 0
GPRASP1 WILD-TYPE 137 23 53 6 2
'GPRASP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S1520.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
GPRASP1 MUTATED 3 2 6
GPRASP1 WILD-TYPE 40 37 47
'GPRASP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S1521.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
GPRASP1 MUTATED 7 4 2 1 2 1
GPRASP1 WILD-TYPE 32 32 35 9 38 23
'GPRASP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1522.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
GPRASP1 MUTATED 6 6 4 1
GPRASP1 WILD-TYPE 59 58 36 16
'GPRASP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1523.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
GPRASP1 MUTATED 6 7 7
GPRASP1 WILD-TYPE 73 78 74
'GPRASP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S1524.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
GPRASP1 MUTATED 2 10 8
GPRASP1 WILD-TYPE 57 97 71
'GPRASP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S1525.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
GPRASP1 MUTATED 9 4 7
GPRASP1 WILD-TYPE 69 67 84
'GPRASP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S1526.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
GPRASP1 MUTATED 3 4 6 7
GPRASP1 WILD-TYPE 43 53 60 64
'GPRASP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1527.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
GPRASP1 MUTATED 5 2 1
GPRASP1 WILD-TYPE 50 33 25
'GPRASP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1528.  Gene #140: 'GPRASP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
GPRASP1 MUTATED 3 3 2
GPRASP1 WILD-TYPE 40 43 25
'REV3L MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S1529.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
REV3L MUTATED 2 1 0 0
REV3L WILD-TYPE 10 17 11 10
'REV3L MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S1530.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
REV3L MUTATED 1 0 1 1 0
REV3L WILD-TYPE 11 10 6 6 15
'REV3L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 1

Table S1531.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
REV3L MUTATED 19 0 0 1 0
REV3L WILD-TYPE 137 23 54 6 2

Figure S222.  Get High-res Image Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'REV3L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S1532.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
REV3L MUTATED 2 4 7
REV3L WILD-TYPE 41 35 46
'REV3L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S1533.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
REV3L MUTATED 5 4 3 2 2 1
REV3L WILD-TYPE 34 32 34 8 38 23
'REV3L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1534.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
REV3L MUTATED 6 6 4 1
REV3L WILD-TYPE 59 58 36 16
'REV3L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S1535.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
REV3L MUTATED 6 9 5
REV3L WILD-TYPE 73 76 76
'REV3L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0439 (Fisher's exact test), Q value = 1

Table S1536.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
REV3L MUTATED 1 13 6
REV3L WILD-TYPE 58 94 73

Figure S223.  Get High-res Image Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'REV3L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S1537.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
REV3L MUTATED 8 4 7
REV3L WILD-TYPE 70 67 84
'REV3L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0548 (Fisher's exact test), Q value = 1

Table S1538.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
REV3L MUTATED 3 3 2 11
REV3L WILD-TYPE 43 54 64 60
'REV3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S1539.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
REV3L MUTATED 6 2 3
REV3L WILD-TYPE 49 33 23
'REV3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S1540.  Gene #141: 'REV3L MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
REV3L MUTATED 5 2 4
REV3L WILD-TYPE 38 44 23
'CTNNA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S1541.  Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
CTNNA1 MUTATED 11 0 1 1 0
CTNNA1 WILD-TYPE 145 23 53 6 2
'CTNNA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S1542.  Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CTNNA1 MUTATED 3 1 2
CTNNA1 WILD-TYPE 40 38 51
'CTNNA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S1543.  Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CTNNA1 MUTATED 4 1 1 2 1 1
CTNNA1 WILD-TYPE 35 35 36 8 39 23
'CTNNA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S1544.  Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CTNNA1 MUTATED 3 3 3 1
CTNNA1 WILD-TYPE 62 61 37 16
'CTNNA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S1545.  Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
CTNNA1 MUTATED 5 6 2
CTNNA1 WILD-TYPE 74 79 79
'CTNNA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S1546.  Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
CTNNA1 MUTATED 2 8 3
CTNNA1 WILD-TYPE 57 99 76
'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S1547.  Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
CTNNA1 MUTATED 3 4 5
CTNNA1 WILD-TYPE 75 67 86
'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S1548.  Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
CTNNA1 MUTATED 2 4 2 4
CTNNA1 WILD-TYPE 44 53 64 67
'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S1549.  Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
CTNNA1 MUTATED 2 2 2
CTNNA1 WILD-TYPE 53 33 24
'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S1550.  Gene #142: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
CTNNA1 MUTATED 2 2 2
CTNNA1 WILD-TYPE 41 44 25
'MRPL47 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S1551.  Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MRPL47 MUTATED 1 2 0 0
MRPL47 WILD-TYPE 11 16 11 10
'MRPL47 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S1552.  Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MRPL47 MUTATED 1 1 1 0 0
MRPL47 WILD-TYPE 11 9 6 7 15
'MRPL47 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1553.  Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
MRPL47 MUTATED 5 0 1 0 0
MRPL47 WILD-TYPE 151 23 53 7 2
'MRPL47 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S1554.  Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MRPL47 MUTATED 1 0 2
MRPL47 WILD-TYPE 42 39 51
'MRPL47 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S1555.  Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MRPL47 MUTATED 3 1 1 0 0 1
MRPL47 WILD-TYPE 36 35 36 10 40 23
'MRPL47 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S1556.  Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MRPL47 MUTATED 2 2 1 1
MRPL47 WILD-TYPE 63 62 39 16
'MRPL47 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S1557.  Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
MRPL47 MUTATED 3 2 1
MRPL47 WILD-TYPE 76 83 80
'MRPL47 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S1558.  Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
MRPL47 MUTATED 2 2 2
MRPL47 WILD-TYPE 57 105 77
'MRPL47 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1559.  Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
MRPL47 MUTATED 1 1 2
MRPL47 WILD-TYPE 77 70 89
'MRPL47 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S1560.  Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
MRPL47 MUTATED 2 1 0 1
MRPL47 WILD-TYPE 44 56 66 70
'MRPL47 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1561.  Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
MRPL47 MUTATED 2 1 0
MRPL47 WILD-TYPE 53 34 26
'MRPL47 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S1562.  Gene #143: 'MRPL47 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
MRPL47 MUTATED 2 0 1
MRPL47 WILD-TYPE 41 46 26
'DEPDC1B MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S1563.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
DEPDC1B MUTATED 1 2 0 0
DEPDC1B WILD-TYPE 11 16 11 10
'DEPDC1B MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S1564.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
DEPDC1B MUTATED 2 0 0 1 0
DEPDC1B WILD-TYPE 10 10 7 6 15
'DEPDC1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S1565.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
DEPDC1B MUTATED 11 0 0 0 0
DEPDC1B WILD-TYPE 145 23 54 7 2
'DEPDC1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S1566.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
DEPDC1B MUTATED 3 1 2
DEPDC1B WILD-TYPE 40 38 51
'DEPDC1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 1

Table S1567.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
DEPDC1B MUTATED 3 2 0 3 1 2
DEPDC1B WILD-TYPE 36 34 37 7 39 22

Figure S224.  Get High-res Image Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'DEPDC1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S1568.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
DEPDC1B MUTATED 4 2 3 2
DEPDC1B WILD-TYPE 61 62 37 15
'DEPDC1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S1569.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
DEPDC1B MUTATED 6 3 2
DEPDC1B WILD-TYPE 73 82 79
'DEPDC1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1570.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
DEPDC1B MUTATED 3 5 3
DEPDC1B WILD-TYPE 56 102 76
'DEPDC1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S1571.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
DEPDC1B MUTATED 3 4 3
DEPDC1B WILD-TYPE 75 67 88
'DEPDC1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S1572.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
DEPDC1B MUTATED 1 4 2 3
DEPDC1B WILD-TYPE 45 53 64 68
'DEPDC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S1573.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
DEPDC1B MUTATED 2 3 1
DEPDC1B WILD-TYPE 53 32 25
'DEPDC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S1574.  Gene #144: 'DEPDC1B MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
DEPDC1B MUTATED 3 1 2
DEPDC1B WILD-TYPE 40 45 25
'CASP8 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1575.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CASP8 MUTATED 2 1 0 0
CASP8 WILD-TYPE 10 17 11 10
'CASP8 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0787 (Fisher's exact test), Q value = 1

Table S1576.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CASP8 MUTATED 1 0 2 0 0
CASP8 WILD-TYPE 11 10 5 7 15
'CASP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0507 (Fisher's exact test), Q value = 1

Table S1577.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
CASP8 MUTATED 14 0 1 2 0
CASP8 WILD-TYPE 142 23 53 5 2
'CASP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S1578.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CASP8 MUTATED 2 1 6
CASP8 WILD-TYPE 41 38 47
'CASP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S1579.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CASP8 MUTATED 3 6 2 2 1 1
CASP8 WILD-TYPE 36 30 35 8 39 23
'CASP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1580.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CASP8 MUTATED 6 5 3 1
CASP8 WILD-TYPE 59 59 37 16
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S1581.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
CASP8 MUTATED 7 6 4
CASP8 WILD-TYPE 72 79 77
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S1582.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
CASP8 MUTATED 3 10 4
CASP8 WILD-TYPE 56 97 75
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S1583.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
CASP8 MUTATED 4 7 5
CASP8 WILD-TYPE 74 64 86
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1584.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
CASP8 MUTATED 2 4 3 7
CASP8 WILD-TYPE 44 53 63 64
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S1585.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
CASP8 MUTATED 4 3 0
CASP8 WILD-TYPE 51 32 26
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S1586.  Gene #145: 'CASP8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
CASP8 MUTATED 2 2 3
CASP8 WILD-TYPE 41 44 24
'CACNB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00387 (Fisher's exact test), Q value = 1

Table S1587.  Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
CACNB4 MUTATED 7 0 0 2 1
CACNB4 WILD-TYPE 149 23 54 5 1

Figure S225.  Get High-res Image Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CACNB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S1588.  Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CACNB4 MUTATED 1 2 4
CACNB4 WILD-TYPE 42 37 49
'CACNB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S1589.  Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CACNB4 MUTATED 1 3 2 1 1 1
CACNB4 WILD-TYPE 38 33 35 9 39 23
'CACNB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1590.  Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CACNB4 MUTATED 3 3 2 1
CACNB4 WILD-TYPE 62 61 38 16
'CACNB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S1591.  Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
CACNB4 MUTATED 5 3 2
CACNB4 WILD-TYPE 74 82 79
'CACNB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S1592.  Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
CACNB4 MUTATED 1 6 3
CACNB4 WILD-TYPE 58 101 76
'CACNB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S1593.  Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
CACNB4 MUTATED 5 2 3
CACNB4 WILD-TYPE 73 69 88
'CACNB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S1594.  Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
CACNB4 MUTATED 1 2 1 6
CACNB4 WILD-TYPE 45 55 65 65
'CACNB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1595.  Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
CACNB4 MUTATED 2 1 1
CACNB4 WILD-TYPE 53 34 25
'CACNB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S1596.  Gene #146: 'CACNB4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
CACNB4 MUTATED 3 0 1
CACNB4 WILD-TYPE 40 46 26
'BHLHB9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S1597.  Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
BHLHB9 MUTATED 7 0 0 1 0
BHLHB9 WILD-TYPE 149 23 54 6 2
'BHLHB9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1598.  Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
BHLHB9 MUTATED 1 1 2
BHLHB9 WILD-TYPE 42 38 51
'BHLHB9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S1599.  Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
BHLHB9 MUTATED 1 2 1 0 2 1
BHLHB9 WILD-TYPE 38 34 36 10 38 23
'BHLHB9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S1600.  Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
BHLHB9 MUTATED 3 3 0 1
BHLHB9 WILD-TYPE 62 61 40 16
'BHLHB9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S1601.  Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
BHLHB9 MUTATED 4 4 0
BHLHB9 WILD-TYPE 75 81 81
'BHLHB9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S1602.  Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
BHLHB9 MUTATED 2 5 1
BHLHB9 WILD-TYPE 57 102 78
'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S1603.  Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
BHLHB9 MUTATED 3 4 1
BHLHB9 WILD-TYPE 75 67 90
'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S1604.  Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
BHLHB9 MUTATED 1 3 0 4
BHLHB9 WILD-TYPE 45 54 66 67
'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S1605.  Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
BHLHB9 MUTATED 1 2 0
BHLHB9 WILD-TYPE 54 33 26
'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S1606.  Gene #147: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
BHLHB9 MUTATED 2 0 1
BHLHB9 WILD-TYPE 41 46 26
'C22ORF25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S1607.  Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
C22ORF25 MUTATED 6 0 0 0 0
C22ORF25 WILD-TYPE 150 23 54 7 2
'C22ORF25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1608.  Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
C22ORF25 MUTATED 1 1 1 0 1 1
C22ORF25 WILD-TYPE 38 35 36 10 39 23
'C22ORF25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S1609.  Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
C22ORF25 MUTATED 1 2 1 1
C22ORF25 WILD-TYPE 64 62 39 16
'C22ORF25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0407 (Fisher's exact test), Q value = 1

Table S1610.  Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
C22ORF25 MUTATED 1 5 0
C22ORF25 WILD-TYPE 78 80 81

Figure S226.  Get High-res Image Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'C22ORF25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0946 (Fisher's exact test), Q value = 1

Table S1611.  Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
C22ORF25 MUTATED 1 5 0
C22ORF25 WILD-TYPE 58 102 79
'C22ORF25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0676 (Fisher's exact test), Q value = 1

Table S1612.  Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
C22ORF25 MUTATED 4 2 0
C22ORF25 WILD-TYPE 74 69 91
'C22ORF25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S1613.  Gene #148: 'C22ORF25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
C22ORF25 MUTATED 1 2 0 3
C22ORF25 WILD-TYPE 45 55 66 68
'GALNT7 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S1614.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
GALNT7 MUTATED 2 1 1 0
GALNT7 WILD-TYPE 10 17 10 10
'GALNT7 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0923 (Fisher's exact test), Q value = 1

Table S1615.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
GALNT7 MUTATED 1 0 2 1 0
GALNT7 WILD-TYPE 11 10 5 6 15
'GALNT7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S1616.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
GALNT7 MUTATED 9 0 1 1 0
GALNT7 WILD-TYPE 147 23 53 6 2
'GALNT7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1617.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
GALNT7 MUTATED 1 0 2
GALNT7 WILD-TYPE 42 39 51
'GALNT7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1618.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
GALNT7 MUTATED 1 2 2 1 2 0
GALNT7 WILD-TYPE 38 34 35 9 38 24
'GALNT7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S1619.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
GALNT7 MUTATED 2 4 2 0
GALNT7 WILD-TYPE 63 60 38 17
'GALNT7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S1620.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
GALNT7 MUTATED 3 6 2
GALNT7 WILD-TYPE 76 79 79
'GALNT7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S1621.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
GALNT7 MUTATED 1 8 2
GALNT7 WILD-TYPE 58 99 77
'GALNT7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S1622.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
GALNT7 MUTATED 6 3 2
GALNT7 WILD-TYPE 72 68 89
'GALNT7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0348 (Fisher's exact test), Q value = 1

Table S1623.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
GALNT7 MUTATED 2 2 0 7
GALNT7 WILD-TYPE 44 55 66 64

Figure S227.  Get High-res Image Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'GALNT7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1624.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
GALNT7 MUTATED 2 1 0
GALNT7 WILD-TYPE 53 34 26
'GALNT7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S1625.  Gene #149: 'GALNT7 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
GALNT7 MUTATED 2 0 1
GALNT7 WILD-TYPE 41 46 26
'LGMN MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1626.  Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
LGMN MUTATED 2 1 0 0
LGMN WILD-TYPE 10 17 11 10
'LGMN MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0793 (Fisher's exact test), Q value = 1

Table S1627.  Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
LGMN MUTATED 1 0 2 0 0
LGMN WILD-TYPE 11 10 5 7 15
'LGMN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S1628.  Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
LGMN MUTATED 6 0 0 1 0
LGMN WILD-TYPE 150 23 54 6 2
'LGMN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 1

Table S1629.  Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
LGMN MUTATED 1 3 0 2 0 1
LGMN WILD-TYPE 38 33 37 8 40 23

Figure S228.  Get High-res Image Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'LGMN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S1630.  Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
LGMN MUTATED 3 2 1 1
LGMN WILD-TYPE 62 62 39 16
'LGMN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S1631.  Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
LGMN MUTATED 3 4 0
LGMN WILD-TYPE 76 81 81
'LGMN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1632.  Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
LGMN MUTATED 1 5 1
LGMN WILD-TYPE 58 102 78
'LGMN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S1633.  Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
LGMN MUTATED 3 2 1
LGMN WILD-TYPE 75 69 90
'LGMN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S1634.  Gene #150: 'LGMN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
LGMN MUTATED 1 2 0 3
LGMN WILD-TYPE 45 55 66 68
'EPS8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S1635.  Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
EPS8 MUTATED 9 0 1 1 0
EPS8 WILD-TYPE 147 23 53 6 2
'EPS8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S1636.  Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
EPS8 MUTATED 3 0 3
EPS8 WILD-TYPE 40 39 50
'EPS8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S1637.  Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
EPS8 MUTATED 4 2 1 0 2 1
EPS8 WILD-TYPE 35 34 36 10 38 23
'EPS8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S1638.  Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
EPS8 MUTATED 3 4 2 1
EPS8 WILD-TYPE 62 60 38 16
'EPS8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S1639.  Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
EPS8 MUTATED 5 4 2
EPS8 WILD-TYPE 74 81 79
'EPS8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S1640.  Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
EPS8 MUTATED 2 7 2
EPS8 WILD-TYPE 57 100 77
'EPS8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S1641.  Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
EPS8 MUTATED 7 3 2
EPS8 WILD-TYPE 71 68 89
'EPS8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S1642.  Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
EPS8 MUTATED 3 3 1 5
EPS8 WILD-TYPE 43 54 65 66
'EPS8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1643.  Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
EPS8 MUTATED 3 2 1
EPS8 WILD-TYPE 52 33 25
'EPS8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S1644.  Gene #151: 'EPS8 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
EPS8 MUTATED 2 2 2
EPS8 WILD-TYPE 41 44 25
'TGOLN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S1645.  Gene #152: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
TGOLN2 MUTATED 3 0 0 0 0
TGOLN2 WILD-TYPE 153 23 54 7 2
'TGOLN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S1646.  Gene #152: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TGOLN2 MUTATED 0 2 1 0 0 0
TGOLN2 WILD-TYPE 39 34 36 10 40 24
'TGOLN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S1647.  Gene #152: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TGOLN2 MUTATED 2 0 1 0
TGOLN2 WILD-TYPE 63 64 39 17
'TGOLN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S1648.  Gene #152: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
TGOLN2 MUTATED 2 0 1
TGOLN2 WILD-TYPE 77 85 80
'TGOLN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1649.  Gene #152: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
TGOLN2 MUTATED 1 1 1
TGOLN2 WILD-TYPE 58 106 78
'TGOLN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1650.  Gene #152: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
TGOLN2 MUTATED 1 1 1
TGOLN2 WILD-TYPE 77 70 90
'TGOLN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S1651.  Gene #152: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
TGOLN2 MUTATED 0 2 0 1
TGOLN2 WILD-TYPE 46 55 66 70
'TPX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S1652.  Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
TPX2 MUTATED 5 0 0 1 0
TPX2 WILD-TYPE 151 23 54 6 2
'TPX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S1653.  Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
TPX2 MUTATED 2 1 1
TPX2 WILD-TYPE 41 38 52
'TPX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S1654.  Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
TPX2 MUTATED 3 2 0 0 1 0
TPX2 WILD-TYPE 36 34 37 10 39 24
'TPX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S1655.  Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
TPX2 MUTATED 2 4 0 0
TPX2 WILD-TYPE 63 60 40 17
'TPX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S1656.  Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
TPX2 MUTATED 4 2 0
TPX2 WILD-TYPE 75 83 81
'TPX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S1657.  Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
TPX2 MUTATED 2 4 0
TPX2 WILD-TYPE 57 103 79
'TPX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0649 (Fisher's exact test), Q value = 1

Table S1658.  Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
TPX2 MUTATED 4 2 0
TPX2 WILD-TYPE 74 69 91
'TPX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S1659.  Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
TPX2 MUTATED 1 2 0 3
TPX2 WILD-TYPE 45 55 66 68
'TPX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S1660.  Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
TPX2 MUTATED 0 2 1
TPX2 WILD-TYPE 55 33 25
'TPX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S1661.  Gene #153: 'TPX2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
TPX2 MUTATED 1 0 2
TPX2 WILD-TYPE 42 46 25
'C14ORF118 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S1662.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
C14ORF118 MUTATED 2 1 1 0
C14ORF118 WILD-TYPE 10 17 10 10
'C14ORF118 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0917 (Fisher's exact test), Q value = 1

Table S1663.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
C14ORF118 MUTATED 1 0 2 1 0
C14ORF118 WILD-TYPE 11 10 5 6 15
'C14ORF118 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0549 (Fisher's exact test), Q value = 1

Table S1664.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
C14ORF118 MUTATED 15 0 0 0 0
C14ORF118 WILD-TYPE 141 23 54 7 2
'C14ORF118 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S1665.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
C14ORF118 MUTATED 2 4 3
C14ORF118 WILD-TYPE 41 35 50
'C14ORF118 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0862 (Fisher's exact test), Q value = 1

Table S1666.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
C14ORF118 MUTATED 6 4 1 1 1 0
C14ORF118 WILD-TYPE 33 32 36 9 39 24
'C14ORF118 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S1667.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
C14ORF118 MUTATED 8 3 2 0
C14ORF118 WILD-TYPE 57 61 38 17
'C14ORF118 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S1668.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
C14ORF118 MUTATED 5 4 6
C14ORF118 WILD-TYPE 74 81 75
'C14ORF118 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S1669.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
C14ORF118 MUTATED 2 7 6
C14ORF118 WILD-TYPE 57 100 73
'C14ORF118 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1670.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
C14ORF118 MUTATED 6 3 5
C14ORF118 WILD-TYPE 72 68 86
'C14ORF118 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S1671.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
C14ORF118 MUTATED 1 4 4 5
C14ORF118 WILD-TYPE 45 53 62 66
'C14ORF118 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1672.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
C14ORF118 MUTATED 4 2 1
C14ORF118 WILD-TYPE 51 33 25
'C14ORF118 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S1673.  Gene #154: 'C14ORF118 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
C14ORF118 MUTATED 2 3 2
C14ORF118 WILD-TYPE 41 43 25
'SLC34A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S1674.  Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
SLC34A3 MUTATED 5 0 0 1 0
SLC34A3 WILD-TYPE 151 23 54 6 2
'SLC34A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S1675.  Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SLC34A3 MUTATED 2 0 3
SLC34A3 WILD-TYPE 41 39 50
'SLC34A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S1676.  Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SLC34A3 MUTATED 3 1 1 0 0 0
SLC34A3 WILD-TYPE 36 35 36 10 40 24
'SLC34A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1677.  Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SLC34A3 MUTATED 2 2 1 0
SLC34A3 WILD-TYPE 63 62 39 17
'SLC34A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S1678.  Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
SLC34A3 MUTATED 3 1 2
SLC34A3 WILD-TYPE 76 84 79
'SLC34A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1679.  Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
SLC34A3 MUTATED 1 3 2
SLC34A3 WILD-TYPE 58 104 77
'SLC34A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S1680.  Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
SLC34A3 MUTATED 2 3 1
SLC34A3 WILD-TYPE 76 68 90
'SLC34A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0328 (Fisher's exact test), Q value = 1

Table S1681.  Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
SLC34A3 MUTATED 0 1 0 5
SLC34A3 WILD-TYPE 46 56 66 66

Figure S229.  Get High-res Image Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'SLC34A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S1682.  Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
SLC34A3 MUTATED 1 2 2
SLC34A3 WILD-TYPE 54 33 24
'SLC34A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0414 (Fisher's exact test), Q value = 1

Table S1683.  Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
SLC34A3 MUTATED 2 0 3
SLC34A3 WILD-TYPE 41 46 24

Figure S230.  Get High-res Image Gene #155: 'SLC34A3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZNF662 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1684.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZNF662 MUTATED 2 1 0 0
ZNF662 WILD-TYPE 10 17 11 10
'ZNF662 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S1685.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZNF662 MUTATED 1 0 1 1 0
ZNF662 WILD-TYPE 11 10 6 6 15
'ZNF662 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0692 (Fisher's exact test), Q value = 1

Table S1686.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ZNF662 MUTATED 10 0 1 2 0
ZNF662 WILD-TYPE 146 23 53 5 2
'ZNF662 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S1687.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF662 MUTATED 3 0 5
ZNF662 WILD-TYPE 40 39 48
'ZNF662 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S1688.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF662 MUTATED 3 3 2 1 1 1
ZNF662 WILD-TYPE 36 33 35 9 39 23
'ZNF662 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S1689.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF662 MUTATED 2 6 2 1
ZNF662 WILD-TYPE 63 58 38 16
'ZNF662 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0741 (Fisher's exact test), Q value = 1

Table S1690.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ZNF662 MUTATED 7 5 1
ZNF662 WILD-TYPE 72 80 80
'ZNF662 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S1691.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ZNF662 MUTATED 2 9 2
ZNF662 WILD-TYPE 57 98 77
'ZNF662 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S1692.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ZNF662 MUTATED 5 4 3
ZNF662 WILD-TYPE 73 67 88
'ZNF662 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0667 (Fisher's exact test), Q value = 1

Table S1693.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ZNF662 MUTATED 2 4 0 6
ZNF662 WILD-TYPE 44 53 66 65
'ZNF662 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1694.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ZNF662 MUTATED 3 2 1
ZNF662 WILD-TYPE 52 33 25
'ZNF662 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0515 (Fisher's exact test), Q value = 1

Table S1695.  Gene #156: 'ZNF662 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ZNF662 MUTATED 3 0 3
ZNF662 WILD-TYPE 40 46 24
'ZDBF2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S1696.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZDBF2 MUTATED 2 3 0 0
ZDBF2 WILD-TYPE 10 15 11 10
'ZDBF2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S1697.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZDBF2 MUTATED 3 0 1 1 0
ZDBF2 WILD-TYPE 9 10 6 6 15
'ZDBF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 1

Table S1698.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ZDBF2 MUTATED 15 1 0 2 0
ZDBF2 WILD-TYPE 141 22 54 5 2

Figure S231.  Get High-res Image Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZDBF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S1699.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZDBF2 MUTATED 3 2 5
ZDBF2 WILD-TYPE 40 37 48
'ZDBF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S1700.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZDBF2 MUTATED 4 6 3 1 2 1
ZDBF2 WILD-TYPE 35 30 34 9 38 23
'ZDBF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S1701.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZDBF2 MUTATED 6 7 3 1
ZDBF2 WILD-TYPE 59 57 37 16
'ZDBF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0781 (Fisher's exact test), Q value = 1

Table S1702.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ZDBF2 MUTATED 9 7 2
ZDBF2 WILD-TYPE 70 78 79
'ZDBF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S1703.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ZDBF2 MUTATED 3 12 3
ZDBF2 WILD-TYPE 56 95 76
'ZDBF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S1704.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ZDBF2 MUTATED 8 5 4
ZDBF2 WILD-TYPE 70 66 87
'ZDBF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0696 (Fisher's exact test), Q value = 1

Table S1705.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ZDBF2 MUTATED 2 6 1 8
ZDBF2 WILD-TYPE 44 51 65 63
'ZDBF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S1706.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ZDBF2 MUTATED 4 3 1
ZDBF2 WILD-TYPE 51 32 25
'ZDBF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S1707.  Gene #157: 'ZDBF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ZDBF2 MUTATED 4 1 3
ZDBF2 WILD-TYPE 39 45 24
'SFRP4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S1708.  Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
SFRP4 MUTATED 2 1 0 0
SFRP4 WILD-TYPE 10 17 11 10
'SFRP4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S1709.  Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
SFRP4 MUTATED 1 0 1 1 0
SFRP4 WILD-TYPE 11 10 6 6 15
'SFRP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0288 (Fisher's exact test), Q value = 1

Table S1710.  Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
SFRP4 MUTATED 6 0 0 2 0
SFRP4 WILD-TYPE 150 23 54 5 2

Figure S232.  Get High-res Image Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SFRP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S1711.  Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SFRP4 MUTATED 0 2 2
SFRP4 WILD-TYPE 43 37 51
'SFRP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S1712.  Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SFRP4 MUTATED 1 2 0 0 3 0
SFRP4 WILD-TYPE 38 34 37 10 37 24
'SFRP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S1713.  Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SFRP4 MUTATED 2 4 0 0
SFRP4 WILD-TYPE 63 60 40 17
'SFRP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S1714.  Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
SFRP4 MUTATED 5 2 1
SFRP4 WILD-TYPE 74 83 80
'SFRP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S1715.  Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
SFRP4 MUTATED 1 6 1
SFRP4 WILD-TYPE 58 101 78
'SFRP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S1716.  Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
SFRP4 MUTATED 4 2 1
SFRP4 WILD-TYPE 74 69 90
'SFRP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S1717.  Gene #158: 'SFRP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
SFRP4 MUTATED 1 1 1 4
SFRP4 WILD-TYPE 45 56 65 67
'CCDC146 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S1718.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CCDC146 MUTATED 1 2 1 0
CCDC146 WILD-TYPE 11 16 10 10
'CCDC146 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0488 (Fisher's exact test), Q value = 1

Table S1719.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CCDC146 MUTATED 2 0 2 0 0
CCDC146 WILD-TYPE 10 10 5 7 15

Figure S233.  Get High-res Image Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'CCDC146 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 1

Table S1720.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
CCDC146 MUTATED 12 0 0 2 0
CCDC146 WILD-TYPE 144 23 54 5 2

Figure S234.  Get High-res Image Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC146 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S1721.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CCDC146 MUTATED 2 1 4
CCDC146 WILD-TYPE 41 38 49
'CCDC146 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S1722.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CCDC146 MUTATED 4 4 3 1 0 0
CCDC146 WILD-TYPE 35 32 34 9 40 24
'CCDC146 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S1723.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CCDC146 MUTATED 4 5 3 0
CCDC146 WILD-TYPE 61 59 37 17
'CCDC146 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S1724.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
CCDC146 MUTATED 6 5 3
CCDC146 WILD-TYPE 73 80 78
'CCDC146 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S1725.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
CCDC146 MUTATED 1 10 3
CCDC146 WILD-TYPE 58 97 76
'CCDC146 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S1726.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
CCDC146 MUTATED 7 3 3
CCDC146 WILD-TYPE 71 68 88
'CCDC146 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S1727.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
CCDC146 MUTATED 1 4 1 7
CCDC146 WILD-TYPE 45 53 65 64
'CCDC146 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1728.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
CCDC146 MUTATED 3 1 1
CCDC146 WILD-TYPE 52 34 25
'CCDC146 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S1729.  Gene #159: 'CCDC146 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
CCDC146 MUTATED 1 1 3
CCDC146 WILD-TYPE 42 45 24
'C7ORF60 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S1730.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
C7ORF60 MUTATED 2 1 0 0
C7ORF60 WILD-TYPE 10 17 11 10
'C7ORF60 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S1731.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
C7ORF60 MUTATED 1 0 1 1 0
C7ORF60 WILD-TYPE 11 10 6 6 15
'C7ORF60 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S1732.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
C7ORF60 MUTATED 10 0 0 0 0
C7ORF60 WILD-TYPE 146 23 54 7 2
'C7ORF60 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1733.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
C7ORF60 MUTATED 2 1 2
C7ORF60 WILD-TYPE 41 38 51
'C7ORF60 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S1734.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
C7ORF60 MUTATED 3 2 1 0 3 0
C7ORF60 WILD-TYPE 36 34 36 10 37 24
'C7ORF60 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S1735.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
C7ORF60 MUTATED 3 4 2 0
C7ORF60 WILD-TYPE 62 60 38 17
'C7ORF60 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S1736.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
C7ORF60 MUTATED 5 4 1
C7ORF60 WILD-TYPE 74 81 80
'C7ORF60 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S1737.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
C7ORF60 MUTATED 2 7 1
C7ORF60 WILD-TYPE 57 100 78
'C7ORF60 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S1738.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
C7ORF60 MUTATED 6 2 1
C7ORF60 WILD-TYPE 72 69 90
'C7ORF60 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S1739.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
C7ORF60 MUTATED 2 3 0 4
C7ORF60 WILD-TYPE 44 54 66 67
'C7ORF60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S1740.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
C7ORF60 MUTATED 1 2 1
C7ORF60 WILD-TYPE 54 33 25
'C7ORF60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S1741.  Gene #160: 'C7ORF60 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
C7ORF60 MUTATED 2 0 2
C7ORF60 WILD-TYPE 41 46 25
'ZNF649 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S1742.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZNF649 MUTATED 2 2 0 0
ZNF649 WILD-TYPE 10 16 11 10
'ZNF649 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S1743.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZNF649 MUTATED 2 0 1 1 0
ZNF649 WILD-TYPE 10 10 6 6 15
'ZNF649 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0766 (Fisher's exact test), Q value = 1

Table S1744.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ZNF649 MUTATED 14 0 0 0 0
ZNF649 WILD-TYPE 142 23 54 7 2
'ZNF649 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1745.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF649 MUTATED 2 2 3
ZNF649 WILD-TYPE 41 37 50
'ZNF649 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S1746.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF649 MUTATED 5 3 2 1 2 1
ZNF649 WILD-TYPE 34 33 35 9 38 23
'ZNF649 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1747.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF649 MUTATED 5 5 3 1
ZNF649 WILD-TYPE 60 59 37 16
'ZNF649 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S1748.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ZNF649 MUTATED 5 5 4
ZNF649 WILD-TYPE 74 80 77
'ZNF649 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1749.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ZNF649 MUTATED 2 7 5
ZNF649 WILD-TYPE 57 100 74
'ZNF649 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S1750.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ZNF649 MUTATED 6 2 5
ZNF649 WILD-TYPE 72 69 86
'ZNF649 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S1751.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ZNF649 MUTATED 2 4 3 4
ZNF649 WILD-TYPE 44 53 63 67
'ZNF649 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1752.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ZNF649 MUTATED 3 2 1
ZNF649 WILD-TYPE 52 33 25
'ZNF649 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S1753.  Gene #161: 'ZNF649 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ZNF649 MUTATED 3 1 2
ZNF649 WILD-TYPE 40 45 25
'RASSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S1754.  Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
RASSF9 MUTATED 7 0 0 1 0
RASSF9 WILD-TYPE 149 23 54 6 2
'RASSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S1755.  Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
RASSF9 MUTATED 1 0 2
RASSF9 WILD-TYPE 42 39 51
'RASSF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1756.  Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RASSF9 MUTATED 2 3 1 0 1 0
RASSF9 WILD-TYPE 37 33 36 10 39 24
'RASSF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1757.  Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RASSF9 MUTATED 3 3 1 0
RASSF9 WILD-TYPE 62 61 39 17
'RASSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S1758.  Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
RASSF9 MUTATED 4 3 2
RASSF9 WILD-TYPE 75 82 79
'RASSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S1759.  Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
RASSF9 MUTATED 0 7 2
RASSF9 WILD-TYPE 59 100 77
'RASSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S1760.  Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
RASSF9 MUTATED 5 1 2
RASSF9 WILD-TYPE 73 70 89
'RASSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0875 (Fisher's exact test), Q value = 1

Table S1761.  Gene #162: 'RASSF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
RASSF9 MUTATED 2 1 0 5
RASSF9 WILD-TYPE 44 56 66 66
'NIPA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S1762.  Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
NIPA2 MUTATED 8 0 0 0 0
NIPA2 WILD-TYPE 148 23 54 7 2
'NIPA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S1763.  Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
NIPA2 MUTATED 2 1 1
NIPA2 WILD-TYPE 41 38 52
'NIPA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S1764.  Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
NIPA2 MUTATED 3 0 1 1 1 0
NIPA2 WILD-TYPE 36 36 36 9 39 24
'NIPA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1765.  Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
NIPA2 MUTATED 2 2 2 0
NIPA2 WILD-TYPE 63 62 38 17
'NIPA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1766.  Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
NIPA2 MUTATED 2 3 3
NIPA2 WILD-TYPE 77 82 78
'NIPA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S1767.  Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
NIPA2 MUTATED 2 3 3
NIPA2 WILD-TYPE 57 104 76
'NIPA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S1768.  Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
NIPA2 MUTATED 3 3 2
NIPA2 WILD-TYPE 75 68 89
'NIPA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S1769.  Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
NIPA2 MUTATED 1 4 2 1
NIPA2 WILD-TYPE 45 53 64 70
'NIPA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S1770.  Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
NIPA2 MUTATED 1 2 0
NIPA2 WILD-TYPE 54 33 26
'NIPA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1771.  Gene #163: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
NIPA2 MUTATED 1 1 1
NIPA2 WILD-TYPE 42 45 26
'FILIP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S1772.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
FILIP1 MUTATED 2 2 0 0
FILIP1 WILD-TYPE 10 16 11 10
'FILIP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S1773.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
FILIP1 MUTATED 2 0 1 1 0
FILIP1 WILD-TYPE 10 10 6 6 15
'FILIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0559 (Fisher's exact test), Q value = 1

Table S1774.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
FILIP1 MUTATED 13 0 1 2 0
FILIP1 WILD-TYPE 143 23 53 5 2
'FILIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S1775.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
FILIP1 MUTATED 2 1 5
FILIP1 WILD-TYPE 41 38 48
'FILIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 1

Table S1776.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
FILIP1 MUTATED 4 6 0 2 1 1
FILIP1 WILD-TYPE 35 30 37 8 39 23

Figure S235.  Get High-res Image Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'FILIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S1777.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
FILIP1 MUTATED 6 5 2 1
FILIP1 WILD-TYPE 59 59 38 16
'FILIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S1778.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
FILIP1 MUTATED 6 6 4
FILIP1 WILD-TYPE 73 79 77
'FILIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S1779.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
FILIP1 MUTATED 1 10 5
FILIP1 WILD-TYPE 58 97 74
'FILIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S1780.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
FILIP1 MUTATED 6 4 5
FILIP1 WILD-TYPE 72 67 86
'FILIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S1781.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
FILIP1 MUTATED 2 3 3 7
FILIP1 WILD-TYPE 44 54 63 64
'FILIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1782.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
FILIP1 MUTATED 3 2 1
FILIP1 WILD-TYPE 52 33 25
'FILIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S1783.  Gene #164: 'FILIP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
FILIP1 MUTATED 3 2 1
FILIP1 WILD-TYPE 40 44 26
'PHKA2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1784.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
PHKA2 MUTATED 2 2 1 1
PHKA2 WILD-TYPE 10 16 10 9
'PHKA2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S1785.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
PHKA2 MUTATED 1 1 1 2 1
PHKA2 WILD-TYPE 11 9 6 5 14
'PHKA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 1

Table S1786.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
PHKA2 MUTATED 13 0 0 2 0
PHKA2 WILD-TYPE 143 23 54 5 2

Figure S236.  Get High-res Image Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'PHKA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S1787.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PHKA2 MUTATED 1 0 4
PHKA2 WILD-TYPE 42 39 49
'PHKA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S1788.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PHKA2 MUTATED 1 3 2 1 3 2
PHKA2 WILD-TYPE 38 33 35 9 37 22
'PHKA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S1789.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PHKA2 MUTATED 2 5 3 2
PHKA2 WILD-TYPE 63 59 37 15
'PHKA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S1790.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
PHKA2 MUTATED 5 8 2
PHKA2 WILD-TYPE 74 77 79
'PHKA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0708 (Fisher's exact test), Q value = 1

Table S1791.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
PHKA2 MUTATED 1 11 3
PHKA2 WILD-TYPE 58 96 76
'PHKA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0517 (Fisher's exact test), Q value = 1

Table S1792.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
PHKA2 MUTATED 9 5 2
PHKA2 WILD-TYPE 69 66 89
'PHKA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00473 (Fisher's exact test), Q value = 1

Table S1793.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
PHKA2 MUTATED 2 4 0 10
PHKA2 WILD-TYPE 44 53 66 61

Figure S237.  Get High-res Image Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'PHKA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1794.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
PHKA2 MUTATED 3 1 1
PHKA2 WILD-TYPE 52 34 25
'PHKA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S1795.  Gene #165: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
PHKA2 MUTATED 2 1 2
PHKA2 WILD-TYPE 41 45 25
'COBLL1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S1796.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
COBLL1 MUTATED 2 2 0 0
COBLL1 WILD-TYPE 10 16 11 10
'COBLL1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S1797.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
COBLL1 MUTATED 2 0 1 1 0
COBLL1 WILD-TYPE 10 10 6 6 15
'COBLL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S1798.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
COBLL1 MUTATED 13 0 1 1 0
COBLL1 WILD-TYPE 143 23 53 6 2
'COBLL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S1799.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
COBLL1 MUTATED 3 0 5
COBLL1 WILD-TYPE 40 39 48
'COBLL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S1800.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
COBLL1 MUTATED 4 4 2 1 2 1
COBLL1 WILD-TYPE 35 32 35 9 38 23
'COBLL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S1801.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
COBLL1 MUTATED 4 6 3 1
COBLL1 WILD-TYPE 61 58 37 16
'COBLL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S1802.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
COBLL1 MUTATED 6 7 2
COBLL1 WILD-TYPE 73 78 79
'COBLL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S1803.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
COBLL1 MUTATED 2 10 3
COBLL1 WILD-TYPE 57 97 76
'COBLL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S1804.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
COBLL1 MUTATED 8 3 3
COBLL1 WILD-TYPE 70 68 88
'COBLL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S1805.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
COBLL1 MUTATED 3 5 1 5
COBLL1 WILD-TYPE 43 52 65 66
'COBLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1806.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
COBLL1 MUTATED 3 2 1
COBLL1 WILD-TYPE 52 33 25
'COBLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S1807.  Gene #166: 'COBLL1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
COBLL1 MUTATED 3 1 2
COBLL1 WILD-TYPE 40 45 25
'AGPAT9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S1808.  Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
AGPAT9 MUTATED 8 0 0 0 0
AGPAT9 WILD-TYPE 148 23 54 7 2
'AGPAT9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S1809.  Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
AGPAT9 MUTATED 0 0 3
AGPAT9 WILD-TYPE 43 39 50
'AGPAT9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S1810.  Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
AGPAT9 MUTATED 2 2 1 2 0 1
AGPAT9 WILD-TYPE 37 34 36 8 40 23
'AGPAT9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S1811.  Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
AGPAT9 MUTATED 3 1 3 1
AGPAT9 WILD-TYPE 62 63 37 16
'AGPAT9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 1

Table S1812.  Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
AGPAT9 MUTATED 0 6 2
AGPAT9 WILD-TYPE 79 79 79

Figure S238.  Get High-res Image Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'AGPAT9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S1813.  Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
AGPAT9 MUTATED 0 4 4
AGPAT9 WILD-TYPE 59 103 75
'AGPAT9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1814.  Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
AGPAT9 MUTATED 3 2 3
AGPAT9 WILD-TYPE 75 69 88
'AGPAT9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S1815.  Gene #167: 'AGPAT9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
AGPAT9 MUTATED 2 2 1 3
AGPAT9 WILD-TYPE 44 55 65 68
'NOP56 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 1

Table S1816.  Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
NOP56 MUTATED 9 0 0 2 0
NOP56 WILD-TYPE 147 23 54 5 2

Figure S239.  Get High-res Image Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'NOP56 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S1817.  Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
NOP56 MUTATED 2 1 4
NOP56 WILD-TYPE 41 38 49
'NOP56 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00986 (Fisher's exact test), Q value = 1

Table S1818.  Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
NOP56 MUTATED 5 4 0 1 0 0
NOP56 WILD-TYPE 34 32 37 9 40 24

Figure S240.  Get High-res Image Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'NOP56 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S1819.  Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
NOP56 MUTATED 6 3 1 0
NOP56 WILD-TYPE 59 61 39 17
'NOP56 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S1820.  Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
NOP56 MUTATED 6 2 3
NOP56 WILD-TYPE 73 83 78
'NOP56 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1821.  Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
NOP56 MUTATED 2 5 4
NOP56 WILD-TYPE 57 102 75
'NOP56 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S1822.  Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
NOP56 MUTATED 3 5 3
NOP56 WILD-TYPE 75 66 88
'NOP56 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S1823.  Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
NOP56 MUTATED 0 3 2 6
NOP56 WILD-TYPE 46 54 64 65
'NOP56 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S1824.  Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
NOP56 MUTATED 1 2 1
NOP56 WILD-TYPE 54 33 25
'NOP56 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S1825.  Gene #168: 'NOP56 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
NOP56 MUTATED 1 1 2
NOP56 WILD-TYPE 42 45 25
'RBL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S1826.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
RBL2 MUTATED 2 2 0 0
RBL2 WILD-TYPE 10 16 11 10
'RBL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S1827.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
RBL2 MUTATED 2 0 1 1 0
RBL2 WILD-TYPE 10 10 6 6 15
'RBL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 1

Table S1828.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
RBL2 MUTATED 10 0 0 2 0
RBL2 WILD-TYPE 146 23 54 5 2

Figure S241.  Get High-res Image Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'RBL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S1829.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
RBL2 MUTATED 1 2 2
RBL2 WILD-TYPE 42 37 51
'RBL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S1830.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
RBL2 MUTATED 3 3 3 1 1 0
RBL2 WILD-TYPE 36 33 34 9 39 24
'RBL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S1831.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
RBL2 MUTATED 3 4 4 0
RBL2 WILD-TYPE 62 60 36 17
'RBL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S1832.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
RBL2 MUTATED 4 6 2
RBL2 WILD-TYPE 75 79 79
'RBL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 1

Table S1833.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
RBL2 MUTATED 0 10 2
RBL2 WILD-TYPE 59 97 77

Figure S242.  Get High-res Image Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'RBL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S1834.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
RBL2 MUTATED 7 3 2
RBL2 WILD-TYPE 71 68 89
'RBL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S1835.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
RBL2 MUTATED 1 2 2 7
RBL2 WILD-TYPE 45 55 64 64
'RBL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S1836.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
RBL2 MUTATED 2 0 2
RBL2 WILD-TYPE 53 35 24
'RBL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S1837.  Gene #169: 'RBL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
RBL2 MUTATED 0 2 2
RBL2 WILD-TYPE 43 44 25
'ABCC6 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1838.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ABCC6 MUTATED 2 1 1 0
ABCC6 WILD-TYPE 10 17 10 10
'ABCC6 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.00891 (Fisher's exact test), Q value = 1

Table S1839.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ABCC6 MUTATED 1 0 3 0 0
ABCC6 WILD-TYPE 11 10 4 7 15

Figure S243.  Get High-res Image Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'ABCC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S1840.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ABCC6 MUTATED 12 0 0 0 0
ABCC6 WILD-TYPE 144 23 54 7 2
'ABCC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S1841.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ABCC6 MUTATED 1 2 2
ABCC6 WILD-TYPE 42 37 51
'ABCC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0781 (Fisher's exact test), Q value = 1

Table S1842.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ABCC6 MUTATED 4 2 1 2 0 2
ABCC6 WILD-TYPE 35 34 36 8 40 22
'ABCC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S1843.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ABCC6 MUTATED 6 3 1 1
ABCC6 WILD-TYPE 59 61 39 16
'ABCC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S1844.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ABCC6 MUTATED 3 6 3
ABCC6 WILD-TYPE 76 79 78
'ABCC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S1845.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ABCC6 MUTATED 1 6 5
ABCC6 WILD-TYPE 58 101 74
'ABCC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S1846.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ABCC6 MUTATED 4 1 6
ABCC6 WILD-TYPE 74 70 85
'ABCC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S1847.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ABCC6 MUTATED 3 1 3 4
ABCC6 WILD-TYPE 43 56 63 67
'ABCC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S1848.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ABCC6 MUTATED 3 0 1
ABCC6 WILD-TYPE 52 35 25
'ABCC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1849.  Gene #170: 'ABCC6 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ABCC6 MUTATED 1 2 1
ABCC6 WILD-TYPE 42 44 26
'CCDC104 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 1

Table S1850.  Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
CCDC104 MUTATED 8 0 0 2 0
CCDC104 WILD-TYPE 148 23 54 5 2

Figure S244.  Get High-res Image Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'CCDC104 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S1851.  Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CCDC104 MUTATED 0 1 4
CCDC104 WILD-TYPE 43 38 49
'CCDC104 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0761 (Fisher's exact test), Q value = 1

Table S1852.  Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CCDC104 MUTATED 1 4 1 2 1 0
CCDC104 WILD-TYPE 38 32 36 8 39 24
'CCDC104 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S1853.  Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CCDC104 MUTATED 4 2 3 0
CCDC104 WILD-TYPE 61 62 37 17
'CCDC104 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S1854.  Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
CCDC104 MUTATED 3 3 4
CCDC104 WILD-TYPE 76 82 77
'CCDC104 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S1855.  Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
CCDC104 MUTATED 1 6 3
CCDC104 WILD-TYPE 58 101 76
'CCDC104 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S1856.  Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
CCDC104 MUTATED 4 2 3
CCDC104 WILD-TYPE 74 69 88
'CCDC104 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S1857.  Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
CCDC104 MUTATED 0 3 2 4
CCDC104 WILD-TYPE 46 54 64 67
'CCDC104 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S1858.  Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
CCDC104 MUTATED 3 0 0
CCDC104 WILD-TYPE 52 35 26
'CCDC104 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S1859.  Gene #171: 'CCDC104 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
CCDC104 MUTATED 1 2 0
CCDC104 WILD-TYPE 42 44 27
'MLL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S1860.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MLL2 MUTATED 4 4 1 1
MLL2 WILD-TYPE 8 14 10 9
'MLL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0511 (Fisher's exact test), Q value = 1

Table S1861.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MLL2 MUTATED 4 0 2 3 1
MLL2 WILD-TYPE 8 10 5 4 14
'MLL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0091 (Fisher's exact test), Q value = 1

Table S1862.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
MLL2 MUTATED 28 2 1 2 0
MLL2 WILD-TYPE 128 21 53 5 2

Figure S245.  Get High-res Image Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MLL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 1

Table S1863.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MLL2 MUTATED 4 1 11
MLL2 WILD-TYPE 39 38 42

Figure S246.  Get High-res Image Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MLL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0752 (Fisher's exact test), Q value = 1

Table S1864.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MLL2 MUTATED 3 7 7 4 3 2
MLL2 WILD-TYPE 36 29 30 6 37 22
'MLL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0656 (Fisher's exact test), Q value = 1

Table S1865.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MLL2 MUTATED 7 6 11 2
MLL2 WILD-TYPE 58 58 29 15
'MLL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S1866.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
MLL2 MUTATED 10 13 10
MLL2 WILD-TYPE 69 72 71
'MLL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S1867.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
MLL2 MUTATED 6 17 10
MLL2 WILD-TYPE 53 90 69
'MLL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S1868.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
MLL2 MUTATED 13 10 9
MLL2 WILD-TYPE 65 61 82
'MLL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S1869.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
MLL2 MUTATED 4 8 6 14
MLL2 WILD-TYPE 42 49 60 57
'MLL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S1870.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
MLL2 MUTATED 6 3 4
MLL2 WILD-TYPE 49 32 22
'MLL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S1871.  Gene #172: 'MLL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
MLL2 MUTATED 4 5 4
MLL2 WILD-TYPE 39 41 23
'SSH2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S1872.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
SSH2 MUTATED 2 1 1 0
SSH2 WILD-TYPE 10 17 10 10
'SSH2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0935 (Fisher's exact test), Q value = 1

Table S1873.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
SSH2 MUTATED 1 0 2 1 0
SSH2 WILD-TYPE 11 10 5 6 15
'SSH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S1874.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
SSH2 MUTATED 12 0 0 0 0
SSH2 WILD-TYPE 144 23 54 7 2
'SSH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S1875.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SSH2 MUTATED 2 1 1
SSH2 WILD-TYPE 41 38 52
'SSH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S1876.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SSH2 MUTATED 4 2 1 2 2 0
SSH2 WILD-TYPE 35 34 36 8 38 24
'SSH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S1877.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SSH2 MUTATED 4 4 3 0
SSH2 WILD-TYPE 61 60 37 17
'SSH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S1878.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
SSH2 MUTATED 3 5 4
SSH2 WILD-TYPE 76 80 77
'SSH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S1879.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
SSH2 MUTATED 2 6 4
SSH2 WILD-TYPE 57 101 75
'SSH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S1880.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
SSH2 MUTATED 5 3 3
SSH2 WILD-TYPE 73 68 88
'SSH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S1881.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
SSH2 MUTATED 2 3 2 4
SSH2 WILD-TYPE 44 54 64 67
'SSH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S1882.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
SSH2 MUTATED 2 2 0
SSH2 WILD-TYPE 53 33 26
'SSH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S1883.  Gene #173: 'SSH2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
SSH2 MUTATED 2 1 1
SSH2 WILD-TYPE 41 45 26
'ZNF709 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S1884.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZNF709 MUTATED 2 1 0 0
ZNF709 WILD-TYPE 10 17 11 10
'ZNF709 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S1885.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZNF709 MUTATED 1 0 1 1 0
ZNF709 WILD-TYPE 11 10 6 6 15
'ZNF709 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 1

Table S1886.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ZNF709 MUTATED 10 0 0 2 0
ZNF709 WILD-TYPE 146 23 54 5 2

Figure S247.  Get High-res Image Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF709 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S1887.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF709 MUTATED 1 0 5
ZNF709 WILD-TYPE 42 39 48
'ZNF709 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S1888.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF709 MUTATED 2 3 1 2 1 1
ZNF709 WILD-TYPE 37 33 36 8 39 23
'ZNF709 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S1889.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF709 MUTATED 2 5 2 1
ZNF709 WILD-TYPE 63 59 38 16
'ZNF709 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S1890.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ZNF709 MUTATED 5 6 1
ZNF709 WILD-TYPE 74 79 80
'ZNF709 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.011 (Fisher's exact test), Q value = 1

Table S1891.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ZNF709 MUTATED 0 10 2
ZNF709 WILD-TYPE 59 97 77

Figure S248.  Get High-res Image Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF709 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S1892.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ZNF709 MUTATED 5 2 4
ZNF709 WILD-TYPE 73 69 87
'ZNF709 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S1893.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ZNF709 MUTATED 2 2 1 6
ZNF709 WILD-TYPE 44 55 65 65
'ZNF709 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S1894.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ZNF709 MUTATED 2 0 2
ZNF709 WILD-TYPE 53 35 24
'ZNF709 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S1895.  Gene #174: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ZNF709 MUTATED 1 1 2
ZNF709 WILD-TYPE 42 45 25
'BRDT MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1896.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
BRDT MUTATED 1 1 1 0
BRDT WILD-TYPE 11 17 10 10
'BRDT MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S1897.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
BRDT MUTATED 1 0 1 0 1
BRDT WILD-TYPE 11 10 6 7 14
'BRDT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0331 (Fisher's exact test), Q value = 1

Table S1898.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
BRDT MUTATED 11 1 0 2 0
BRDT WILD-TYPE 145 22 54 5 2

Figure S249.  Get High-res Image Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'BRDT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S1899.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
BRDT MUTATED 2 1 4
BRDT WILD-TYPE 41 38 49
'BRDT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 1

Table S1900.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
BRDT MUTATED 4 4 1 3 0 1
BRDT WILD-TYPE 35 32 36 7 40 23

Figure S250.  Get High-res Image Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'BRDT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S1901.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
BRDT MUTATED 4 5 3 1
BRDT WILD-TYPE 61 59 37 16
'BRDT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S1902.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
BRDT MUTATED 6 5 3
BRDT WILD-TYPE 73 80 78
'BRDT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S1903.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
BRDT MUTATED 1 10 3
BRDT WILD-TYPE 58 97 76
'BRDT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S1904.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
BRDT MUTATED 5 3 5
BRDT WILD-TYPE 73 68 86
'BRDT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S1905.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
BRDT MUTATED 3 3 2 5
BRDT WILD-TYPE 43 54 64 66
'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1906.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
BRDT MUTATED 3 1 1
BRDT WILD-TYPE 52 34 25
'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S1907.  Gene #175: 'BRDT MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
BRDT MUTATED 1 1 3
BRDT WILD-TYPE 42 45 24
'SH3BGRL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 1

Table S1908.  Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
SH3BGRL MUTATED 4 0 0 2 0
SH3BGRL WILD-TYPE 152 23 54 5 2

Figure S251.  Get High-res Image Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'SH3BGRL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S1909.  Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SH3BGRL MUTATED 0 2 0 1 1 0
SH3BGRL WILD-TYPE 39 34 37 9 39 24
'SH3BGRL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S1910.  Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SH3BGRL MUTATED 1 1 2 0
SH3BGRL WILD-TYPE 64 63 38 17
'SH3BGRL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S1911.  Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
SH3BGRL MUTATED 2 3 1
SH3BGRL WILD-TYPE 77 82 80
'SH3BGRL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S1912.  Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
SH3BGRL MUTATED 0 5 1
SH3BGRL WILD-TYPE 59 102 78
'SH3BGRL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0661 (Fisher's exact test), Q value = 1

Table S1913.  Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
SH3BGRL MUTATED 4 2 0
SH3BGRL WILD-TYPE 74 69 91
'SH3BGRL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S1914.  Gene #176: 'SH3BGRL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
SH3BGRL MUTATED 1 1 0 4
SH3BGRL WILD-TYPE 45 56 66 67
'MLH3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S1915.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MLH3 MUTATED 1 2 1 0
MLH3 WILD-TYPE 11 16 10 10
'MLH3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0477 (Fisher's exact test), Q value = 1

Table S1916.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MLH3 MUTATED 2 0 2 0 0
MLH3 WILD-TYPE 10 10 5 7 15

Figure S252.  Get High-res Image Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

'MLH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 1

Table S1917.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
MLH3 MUTATED 16 0 0 1 0
MLH3 WILD-TYPE 140 23 54 6 2

Figure S253.  Get High-res Image Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MLH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1918.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MLH3 MUTATED 3 2 4
MLH3 WILD-TYPE 40 37 49
'MLH3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S1919.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MLH3 MUTATED 6 4 1 1 1 2
MLH3 WILD-TYPE 33 32 36 9 39 22
'MLH3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1920.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MLH3 MUTATED 6 5 3 1
MLH3 WILD-TYPE 59 59 37 16
'MLH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S1921.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
MLH3 MUTATED 6 5 6
MLH3 WILD-TYPE 73 80 75
'MLH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S1922.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
MLH3 MUTATED 2 8 7
MLH3 WILD-TYPE 57 99 72
'MLH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S1923.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
MLH3 MUTATED 7 3 6
MLH3 WILD-TYPE 71 68 85
'MLH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S1924.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
MLH3 MUTATED 3 4 3 6
MLH3 WILD-TYPE 43 53 63 65
'MLH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1925.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
MLH3 MUTATED 5 2 1
MLH3 WILD-TYPE 50 33 25
'MLH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1926.  Gene #177: 'MLH3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
MLH3 MUTATED 3 3 2
MLH3 WILD-TYPE 40 43 25
'CCDC150 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S1927.  Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
CCDC150 MUTATED 11 0 0 0 0
CCDC150 WILD-TYPE 145 23 54 7 2
'CCDC150 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S1928.  Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CCDC150 MUTATED 2 1 6
CCDC150 WILD-TYPE 41 38 47
'CCDC150 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S1929.  Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CCDC150 MUTATED 4 4 2 1 0 1
CCDC150 WILD-TYPE 35 32 35 9 40 23
'CCDC150 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S1930.  Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CCDC150 MUTATED 7 1 3 1
CCDC150 WILD-TYPE 58 63 37 16
'CCDC150 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S1931.  Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
CCDC150 MUTATED 4 3 5
CCDC150 WILD-TYPE 75 82 76
'CCDC150 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S1932.  Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
CCDC150 MUTATED 1 5 6
CCDC150 WILD-TYPE 58 102 73
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S1933.  Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
CCDC150 MUTATED 3 3 5
CCDC150 WILD-TYPE 75 68 86
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S1934.  Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
CCDC150 MUTATED 1 3 2 5
CCDC150 WILD-TYPE 45 54 64 66
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S1935.  Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
CCDC150 MUTATED 4 3 1
CCDC150 WILD-TYPE 51 32 25
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S1936.  Gene #178: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
CCDC150 MUTATED 4 2 2
CCDC150 WILD-TYPE 39 44 25
'NT5C3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S1937.  Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
NT5C3 MUTATED 2 1 1 0
NT5C3 WILD-TYPE 10 17 10 10
'NT5C3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.091 (Fisher's exact test), Q value = 1

Table S1938.  Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
NT5C3 MUTATED 1 0 2 1 0
NT5C3 WILD-TYPE 11 10 5 6 15
'NT5C3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S1939.  Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
NT5C3 MUTATED 7 0 0 0 0
NT5C3 WILD-TYPE 149 23 54 7 2
'NT5C3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S1940.  Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
NT5C3 MUTATED 2 2 0 1 1 0
NT5C3 WILD-TYPE 37 34 37 9 39 24
'NT5C3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S1941.  Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
NT5C3 MUTATED 2 3 1 0
NT5C3 WILD-TYPE 63 61 39 17
'NT5C3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S1942.  Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
NT5C3 MUTATED 3 3 1
NT5C3 WILD-TYPE 76 82 80
'NT5C3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1943.  Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
NT5C3 MUTATED 1 5 1
NT5C3 WILD-TYPE 58 102 78
'NT5C3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.067 (Fisher's exact test), Q value = 1

Table S1944.  Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
NT5C3 MUTATED 4 2 0
NT5C3 WILD-TYPE 74 69 91
'NT5C3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S1945.  Gene #179: 'NT5C3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
NT5C3 MUTATED 1 3 0 2
NT5C3 WILD-TYPE 45 54 66 69
'APAF1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S1946.  Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
APAF1 MUTATED 3 2 0 0
APAF1 WILD-TYPE 9 16 11 10
'APAF1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0912 (Fisher's exact test), Q value = 1

Table S1947.  Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
APAF1 MUTATED 2 0 1 2 0
APAF1 WILD-TYPE 10 10 6 5 15
'APAF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 1

Table S1948.  Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
APAF1 MUTATED 10 1 0 2 0
APAF1 WILD-TYPE 146 22 54 5 2

Figure S254.  Get High-res Image Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'APAF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S1949.  Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
APAF1 MUTATED 0 0 3
APAF1 WILD-TYPE 43 39 50
'APAF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S1950.  Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
APAF1 MUTATED 1 4 2 1 2 1
APAF1 WILD-TYPE 38 32 35 9 38 23
'APAF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S1951.  Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
APAF1 MUTATED 3 4 3 1
APAF1 WILD-TYPE 62 60 37 16
'APAF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0952 (Fisher's exact test), Q value = 1

Table S1952.  Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
APAF1 MUTATED 4 7 1
APAF1 WILD-TYPE 75 78 80
'APAF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0116 (Fisher's exact test), Q value = 1

Table S1953.  Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
APAF1 MUTATED 0 10 2
APAF1 WILD-TYPE 59 97 77

Figure S255.  Get High-res Image Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'APAF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.055 (Fisher's exact test), Q value = 1

Table S1954.  Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
APAF1 MUTATED 8 2 2
APAF1 WILD-TYPE 70 69 89
'APAF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00962 (Fisher's exact test), Q value = 1

Table S1955.  Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
APAF1 MUTATED 4 1 0 7
APAF1 WILD-TYPE 42 56 66 64

Figure S256.  Get High-res Image Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'APAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S1956.  Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
APAF1 MUTATED 3 0 0
APAF1 WILD-TYPE 52 35 26
'APAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S1957.  Gene #180: 'APAF1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
APAF1 MUTATED 2 1 0
APAF1 WILD-TYPE 41 45 27
'KANK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 1

Table S1958.  Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
KANK4 MUTATED 7 1 0 2 0
KANK4 WILD-TYPE 149 22 54 5 2

Figure S257.  Get High-res Image Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'KANK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S1959.  Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
KANK4 MUTATED 2 1 5
KANK4 WILD-TYPE 41 38 48
'KANK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 1

Table S1960.  Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
KANK4 MUTATED 4 5 1 0 0 0
KANK4 WILD-TYPE 35 31 36 10 40 24

Figure S258.  Get High-res Image Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'KANK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S1961.  Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
KANK4 MUTATED 6 4 0 0
KANK4 WILD-TYPE 59 60 40 17
'KANK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S1962.  Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
KANK4 MUTATED 6 3 2
KANK4 WILD-TYPE 73 82 79
'KANK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S1963.  Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
KANK4 MUTATED 1 8 2
KANK4 WILD-TYPE 58 99 77
'KANK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S1964.  Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
KANK4 MUTATED 4 3 3
KANK4 WILD-TYPE 74 68 88
'KANK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0487 (Fisher's exact test), Q value = 1

Table S1965.  Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
KANK4 MUTATED 0 1 2 7
KANK4 WILD-TYPE 46 56 64 64

Figure S259.  Get High-res Image Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'KANK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S1966.  Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
KANK4 MUTATED 3 2 2
KANK4 WILD-TYPE 52 33 24
'KANK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S1967.  Gene #181: 'KANK4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
KANK4 MUTATED 1 2 4
KANK4 WILD-TYPE 42 44 23
'NRIP1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1968.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
NRIP1 MUTATED 2 1 0 0
NRIP1 WILD-TYPE 10 17 11 10
'NRIP1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0775 (Fisher's exact test), Q value = 1

Table S1969.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
NRIP1 MUTATED 1 0 0 2 0
NRIP1 WILD-TYPE 11 10 7 5 15
'NRIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0697 (Fisher's exact test), Q value = 1

Table S1970.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
NRIP1 MUTATED 10 0 1 2 0
NRIP1 WILD-TYPE 146 23 53 5 2
'NRIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S1971.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
NRIP1 MUTATED 3 1 3
NRIP1 WILD-TYPE 40 38 50
'NRIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S1972.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
NRIP1 MUTATED 3 4 2 1 1 0
NRIP1 WILD-TYPE 36 32 35 9 39 24
'NRIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S1973.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
NRIP1 MUTATED 4 4 3 0
NRIP1 WILD-TYPE 61 60 37 17
'NRIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S1974.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
NRIP1 MUTATED 6 5 2
NRIP1 WILD-TYPE 73 80 79
'NRIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S1975.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
NRIP1 MUTATED 2 9 2
NRIP1 WILD-TYPE 57 98 77
'NRIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S1976.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
NRIP1 MUTATED 7 4 2
NRIP1 WILD-TYPE 71 67 89
'NRIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0264 (Fisher's exact test), Q value = 1

Table S1977.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
NRIP1 MUTATED 0 5 1 7
NRIP1 WILD-TYPE 46 52 65 64

Figure S260.  Get High-res Image Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'NRIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S1978.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
NRIP1 MUTATED 2 2 1
NRIP1 WILD-TYPE 53 33 25
'NRIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S1979.  Gene #182: 'NRIP1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
NRIP1 MUTATED 2 1 2
NRIP1 WILD-TYPE 41 45 25
'GTF2H1 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S1980.  Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
GTF2H1 MUTATED 1 2 0 0
GTF2H1 WILD-TYPE 11 16 11 10
'GTF2H1 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S1981.  Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
GTF2H1 MUTATED 2 0 1 0 0
GTF2H1 WILD-TYPE 10 10 6 7 15
'GTF2H1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S1982.  Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
GTF2H1 MUTATED 8 0 0 0 0
GTF2H1 WILD-TYPE 148 23 54 7 2
'GTF2H1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1983.  Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
GTF2H1 MUTATED 1 0 2
GTF2H1 WILD-TYPE 42 39 51
'GTF2H1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S1984.  Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
GTF2H1 MUTATED 2 1 2 0 1 2
GTF2H1 WILD-TYPE 37 35 35 10 39 22
'GTF2H1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S1985.  Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
GTF2H1 MUTATED 1 3 2 2
GTF2H1 WILD-TYPE 64 61 38 15
'GTF2H1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S1986.  Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
GTF2H1 MUTATED 2 5 1
GTF2H1 WILD-TYPE 77 80 80
'GTF2H1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S1987.  Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
GTF2H1 MUTATED 1 5 2
GTF2H1 WILD-TYPE 58 102 77
'GTF2H1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S1988.  Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
GTF2H1 MUTATED 4 2 2
GTF2H1 WILD-TYPE 74 69 89
'GTF2H1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S1989.  Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
GTF2H1 MUTATED 3 3 0 2
GTF2H1 WILD-TYPE 43 54 66 69
'GTF2H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S1990.  Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
GTF2H1 MUTATED 2 0 1
GTF2H1 WILD-TYPE 53 35 25
'GTF2H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S1991.  Gene #183: 'GTF2H1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
GTF2H1 MUTATED 2 0 1
GTF2H1 WILD-TYPE 41 46 26
'ASXL2 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1992.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ASXL2 MUTATED 2 1 0 0
ASXL2 WILD-TYPE 10 17 11 10
'ASXL2 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S1993.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ASXL2 MUTATED 1 0 1 1 0
ASXL2 WILD-TYPE 11 10 6 6 15
'ASXL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0642 (Fisher's exact test), Q value = 1

Table S1994.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ASXL2 MUTATED 11 0 1 2 0
ASXL2 WILD-TYPE 145 23 53 5 2
'ASXL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S1995.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ASXL2 MUTATED 2 1 5
ASXL2 WILD-TYPE 41 38 48
'ASXL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S1996.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ASXL2 MUTATED 3 4 1 0 2 1
ASXL2 WILD-TYPE 36 32 36 10 38 23
'ASXL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S1997.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ASXL2 MUTATED 3 6 1 1
ASXL2 WILD-TYPE 62 58 39 16
'ASXL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S1998.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ASXL2 MUTATED 6 6 2
ASXL2 WILD-TYPE 73 79 79
'ASXL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S1999.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ASXL2 MUTATED 2 9 3
ASXL2 WILD-TYPE 57 98 76
'ASXL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S2000.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ASXL2 MUTATED 6 4 3
ASXL2 WILD-TYPE 72 67 88
'ASXL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0154 (Fisher's exact test), Q value = 1

Table S2001.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ASXL2 MUTATED 3 2 0 8
ASXL2 WILD-TYPE 43 55 66 63

Figure S261.  Get High-res Image Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'ASXL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S2002.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ASXL2 MUTATED 2 2 3
ASXL2 WILD-TYPE 53 33 23
'ASXL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S2003.  Gene #184: 'ASXL2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ASXL2 MUTATED 3 1 3
ASXL2 WILD-TYPE 40 45 24
'ZNF611 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2004.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
ZNF611 MUTATED 1 1 1 0
ZNF611 WILD-TYPE 11 17 10 10
'ZNF611 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0791 (Fisher's exact test), Q value = 1

Table S2005.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
ZNF611 MUTATED 1 0 2 0 0
ZNF611 WILD-TYPE 11 10 5 7 15
'ZNF611 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S2006.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ZNF611 MUTATED 11 0 1 0 0
ZNF611 WILD-TYPE 145 23 53 7 2
'ZNF611 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S2007.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF611 MUTATED 3 0 5
ZNF611 WILD-TYPE 40 39 48
'ZNF611 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S2008.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF611 MUTATED 5 2 2 1 0 1
ZNF611 WILD-TYPE 34 34 35 9 40 23
'ZNF611 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2009.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF611 MUTATED 4 4 2 1
ZNF611 WILD-TYPE 61 60 38 16
'ZNF611 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S2010.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ZNF611 MUTATED 5 5 2
ZNF611 WILD-TYPE 74 80 79
'ZNF611 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S2011.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ZNF611 MUTATED 2 7 3
ZNF611 WILD-TYPE 57 100 76
'ZNF611 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S2012.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ZNF611 MUTATED 6 3 3
ZNF611 WILD-TYPE 72 68 88
'ZNF611 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0655 (Fisher's exact test), Q value = 1

Table S2013.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ZNF611 MUTATED 2 4 0 6
ZNF611 WILD-TYPE 44 53 66 65
'ZNF611 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S2014.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ZNF611 MUTATED 3 1 2
ZNF611 WILD-TYPE 52 34 24
'ZNF611 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0126 (Fisher's exact test), Q value = 1

Table S2015.  Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ZNF611 MUTATED 2 0 4
ZNF611 WILD-TYPE 41 46 23

Figure S262.  Get High-res Image Gene #185: 'ZNF611 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SUN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S2016.  Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
SUN3 MUTATED 6 0 0 0 0
SUN3 WILD-TYPE 150 23 54 7 2
'SUN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S2017.  Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SUN3 MUTATED 2 2 0 1 1 0
SUN3 WILD-TYPE 37 34 37 9 39 24
'SUN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S2018.  Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SUN3 MUTATED 2 3 1 0
SUN3 WILD-TYPE 63 61 39 17
'SUN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S2019.  Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
SUN3 MUTATED 2 4 0
SUN3 WILD-TYPE 77 81 81
'SUN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0211 (Fisher's exact test), Q value = 1

Table S2020.  Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
SUN3 MUTATED 0 6 0
SUN3 WILD-TYPE 59 101 79

Figure S263.  Get High-res Image Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SUN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0181 (Fisher's exact test), Q value = 1

Table S2021.  Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
SUN3 MUTATED 5 1 0
SUN3 WILD-TYPE 73 70 91

Figure S264.  Get High-res Image Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'SUN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S2022.  Gene #186: 'SUN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
SUN3 MUTATED 1 2 0 3
SUN3 WILD-TYPE 45 55 66 68
'ZNF195 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0248 (Fisher's exact test), Q value = 1

Table S2023.  Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
ZNF195 MUTATED 9 0 0 2 0
ZNF195 WILD-TYPE 147 23 54 5 2

Figure S265.  Get High-res Image Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'ZNF195 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S2024.  Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
ZNF195 MUTATED 1 0 4
ZNF195 WILD-TYPE 42 39 49
'ZNF195 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0979 (Fisher's exact test), Q value = 1

Table S2025.  Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
ZNF195 MUTATED 2 5 1 1 0 1
ZNF195 WILD-TYPE 37 31 36 9 40 23
'ZNF195 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2026.  Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
ZNF195 MUTATED 4 3 2 1
ZNF195 WILD-TYPE 61 61 38 16
'ZNF195 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S2027.  Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
ZNF195 MUTATED 5 5 1
ZNF195 WILD-TYPE 74 80 80
'ZNF195 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0291 (Fisher's exact test), Q value = 1

Table S2028.  Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
ZNF195 MUTATED 0 9 2
ZNF195 WILD-TYPE 59 98 77

Figure S266.  Get High-res Image Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'ZNF195 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S2029.  Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
ZNF195 MUTATED 5 3 2
ZNF195 WILD-TYPE 73 68 89
'ZNF195 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S2030.  Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
ZNF195 MUTATED 2 3 0 5
ZNF195 WILD-TYPE 44 54 66 66
'ZNF195 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S2031.  Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
ZNF195 MUTATED 2 0 1
ZNF195 WILD-TYPE 53 35 25
'ZNF195 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S2032.  Gene #187: 'ZNF195 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
ZNF195 MUTATED 2 0 1
ZNF195 WILD-TYPE 41 46 26
'EXOSC9 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S2033.  Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
EXOSC9 MUTATED 1 2 0 0
EXOSC9 WILD-TYPE 11 16 11 10
'EXOSC9 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S2034.  Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
EXOSC9 MUTATED 2 0 1 0 0
EXOSC9 WILD-TYPE 10 10 6 7 15
'EXOSC9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S2035.  Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
EXOSC9 MUTATED 9 0 0 1 0
EXOSC9 WILD-TYPE 147 23 54 6 2
'EXOSC9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S2036.  Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
EXOSC9 MUTATED 0 0 3
EXOSC9 WILD-TYPE 43 39 50
'EXOSC9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S2037.  Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
EXOSC9 MUTATED 2 3 2 0 0 1
EXOSC9 WILD-TYPE 37 33 35 10 40 23
'EXOSC9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S2038.  Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
EXOSC9 MUTATED 4 1 2 1
EXOSC9 WILD-TYPE 61 63 38 16
'EXOSC9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S2039.  Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
EXOSC9 MUTATED 3 5 2
EXOSC9 WILD-TYPE 76 80 79
'EXOSC9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.065 (Fisher's exact test), Q value = 1

Table S2040.  Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
EXOSC9 MUTATED 0 8 2
EXOSC9 WILD-TYPE 59 99 77
'EXOSC9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S2041.  Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
EXOSC9 MUTATED 4 2 3
EXOSC9 WILD-TYPE 74 69 88
'EXOSC9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S2042.  Gene #188: 'EXOSC9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
EXOSC9 MUTATED 1 3 1 4
EXOSC9 WILD-TYPE 45 54 65 67
'MFN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S2043.  Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
MFN2 MUTATED 8 0 0 1 0
MFN2 WILD-TYPE 148 23 54 6 2
'MFN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S2044.  Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MFN2 MUTATED 1 2 3
MFN2 WILD-TYPE 42 37 50
'MFN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S2045.  Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MFN2 MUTATED 1 2 0 0 3 1
MFN2 WILD-TYPE 38 34 37 10 37 23
'MFN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S2046.  Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MFN2 MUTATED 3 3 0 1
MFN2 WILD-TYPE 62 61 40 16
'MFN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S2047.  Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
MFN2 MUTATED 3 4 2
MFN2 WILD-TYPE 76 81 79
'MFN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S2048.  Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
MFN2 MUTATED 0 6 3
MFN2 WILD-TYPE 59 101 76
'MFN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 1

Table S2049.  Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
MFN2 MUTATED 6 0 3
MFN2 WILD-TYPE 72 71 88

Figure S267.  Get High-res Image Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

'MFN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S2050.  Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
MFN2 MUTATED 1 1 1 6
MFN2 WILD-TYPE 45 56 65 65
'MFN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S2051.  Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
MFN2 MUTATED 3 0 2
MFN2 WILD-TYPE 52 35 24
'MFN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S2052.  Gene #189: 'MFN2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
MFN2 MUTATED 3 1 1
MFN2 WILD-TYPE 40 45 26
'LIMA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S2053.  Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
LIMA1 MUTATED 6 0 1 1 0
LIMA1 WILD-TYPE 150 23 53 6 2
'LIMA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S2054.  Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
LIMA1 MUTATED 1 0 3
LIMA1 WILD-TYPE 42 39 50
'LIMA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S2055.  Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
LIMA1 MUTATED 1 2 1 1 1 2
LIMA1 WILD-TYPE 38 34 36 9 39 22
'LIMA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S2056.  Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
LIMA1 MUTATED 1 4 2 1
LIMA1 WILD-TYPE 64 60 38 16
'LIMA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 1

Table S2057.  Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
LIMA1 MUTATED 2 6 0
LIMA1 WILD-TYPE 77 79 81

Figure S268.  Get High-res Image Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

'LIMA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S2058.  Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
LIMA1 MUTATED 1 6 1
LIMA1 WILD-TYPE 58 101 78
'LIMA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S2059.  Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
LIMA1 MUTATED 4 2 2
LIMA1 WILD-TYPE 74 69 89
'LIMA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S2060.  Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
LIMA1 MUTATED 2 2 0 4
LIMA1 WILD-TYPE 44 55 66 67
'LIMA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S2061.  Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
LIMA1 MUTATED 1 1 1
LIMA1 WILD-TYPE 54 34 25
'LIMA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S2062.  Gene #190: 'LIMA1 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
LIMA1 MUTATED 1 0 2
LIMA1 WILD-TYPE 42 46 25
'PTPN12 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0567 (Fisher's exact test), Q value = 1

Table S2063.  Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
PTPN12 MUTATED 3 0 1 0
PTPN12 WILD-TYPE 9 18 10 10
'PTPN12 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S2064.  Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
PTPN12 MUTATED 0 0 2 1 1
PTPN12 WILD-TYPE 12 10 5 6 14
'PTPN12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S2065.  Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
PTPN12 MUTATED 8 1 0 1 0
PTPN12 WILD-TYPE 148 22 54 6 2
'PTPN12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S2066.  Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
PTPN12 MUTATED 1 0 2
PTPN12 WILD-TYPE 42 39 51
'PTPN12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00176 (Fisher's exact test), Q value = 1

Table S2067.  Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
PTPN12 MUTATED 2 2 1 4 0 1
PTPN12 WILD-TYPE 37 34 36 6 40 23

Figure S269.  Get High-res Image Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

'PTPN12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0959 (Fisher's exact test), Q value = 1

Table S2068.  Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
PTPN12 MUTATED 1 3 5 1
PTPN12 WILD-TYPE 64 61 35 16
'PTPN12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S2069.  Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
PTPN12 MUTATED 2 6 2
PTPN12 WILD-TYPE 77 79 79
'PTPN12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S2070.  Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
PTPN12 MUTATED 1 6 3
PTPN12 WILD-TYPE 58 101 76
'PTPN12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2071.  Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
PTPN12 MUTATED 3 3 4
PTPN12 WILD-TYPE 75 68 87
'PTPN12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S2072.  Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
PTPN12 MUTATED 2 3 3 2
PTPN12 WILD-TYPE 44 54 63 69
'PTPN12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2073.  Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
PTPN12 MUTATED 2 1 0
PTPN12 WILD-TYPE 53 34 26
'PTPN12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S2074.  Gene #191: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
PTPN12 MUTATED 2 0 1
PTPN12 WILD-TYPE 41 46 26
'MTF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S2075.  Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
MTF2 MUTATED 8 0 0 1 0
MTF2 WILD-TYPE 148 23 54 6 2
'MTF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S2076.  Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MTF2 MUTATED 1 0 5
MTF2 WILD-TYPE 42 39 48
'MTF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S2077.  Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MTF2 MUTATED 1 3 1 1 0 1
MTF2 WILD-TYPE 38 33 36 9 40 23
'MTF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S2078.  Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MTF2 MUTATED 2 2 2 1
MTF2 WILD-TYPE 63 62 38 16
'MTF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S2079.  Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
MTF2 MUTATED 4 3 2
MTF2 WILD-TYPE 75 82 79
'MTF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S2080.  Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
MTF2 MUTATED 0 6 3
MTF2 WILD-TYPE 59 101 76
'MTF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S2081.  Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
MTF2 MUTATED 4 1 3
MTF2 WILD-TYPE 74 70 88
'MTF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S2082.  Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
MTF2 MUTATED 1 2 0 5
MTF2 WILD-TYPE 45 55 66 66
'MTF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S2083.  Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
MTF2 MUTATED 2 0 2
MTF2 WILD-TYPE 53 35 24
'MTF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S2084.  Gene #192: 'MTF2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
MTF2 MUTATED 2 1 1
MTF2 WILD-TYPE 41 45 26
'MLL4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S2085.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
MLL4 MUTATED 2 1 1 0
MLL4 WILD-TYPE 10 17 10 10
'MLL4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.0917 (Fisher's exact test), Q value = 1

Table S2086.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
MLL4 MUTATED 1 0 2 1 0
MLL4 WILD-TYPE 11 10 5 6 15
'MLL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.53

Table S2087.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
MLL4 MUTATED 27 0 0 2 0
MLL4 WILD-TYPE 129 23 54 5 2

Figure S270.  Get High-res Image Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

'MLL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0389 (Fisher's exact test), Q value = 1

Table S2088.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MLL4 MUTATED 4 2 12
MLL4 WILD-TYPE 39 37 41

Figure S271.  Get High-res Image Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

'MLL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S2089.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MLL4 MUTATED 8 4 2 1 4 1
MLL4 WILD-TYPE 31 32 35 9 36 23
'MLL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S2090.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MLL4 MUTATED 8 8 3 1
MLL4 WILD-TYPE 57 56 37 16
'MLL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S2091.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
MLL4 MUTATED 7 13 10
MLL4 WILD-TYPE 72 72 71
'MLL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0427 (Fisher's exact test), Q value = 1

Table S2092.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
MLL4 MUTATED 2 16 12
MLL4 WILD-TYPE 57 91 67

Figure S272.  Get High-res Image Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S2093.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
MLL4 MUTATED 10 4 14
MLL4 WILD-TYPE 68 67 77
'MLL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0172 (Fisher's exact test), Q value = 1

Table S2094.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
MLL4 MUTATED 3 4 5 16
MLL4 WILD-TYPE 43 53 61 55

Figure S273.  Get High-res Image Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S2095.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
MLL4 MUTATED 9 3 3
MLL4 WILD-TYPE 46 32 23
'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S2096.  Gene #193: 'MLL4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
MLL4 MUTATED 5 5 5
MLL4 WILD-TYPE 38 41 22
'C1ORF101 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S2097.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
C1ORF101 MUTATED 1 1 2 0
C1ORF101 WILD-TYPE 11 17 9 10
'C1ORF101 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S2098.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
C1ORF101 MUTATED 1 0 2 0 1
C1ORF101 WILD-TYPE 11 10 5 7 14
'C1ORF101 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S2099.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
C1ORF101 MUTATED 10 1 0 1 0
C1ORF101 WILD-TYPE 146 22 54 6 2
'C1ORF101 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S2100.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
C1ORF101 MUTATED 2 1 1
C1ORF101 WILD-TYPE 41 38 52
'C1ORF101 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S2101.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
C1ORF101 MUTATED 3 2 1 2 1 0
C1ORF101 WILD-TYPE 36 34 36 8 39 24
'C1ORF101 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S2102.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
C1ORF101 MUTATED 3 4 2 0
C1ORF101 WILD-TYPE 62 60 38 17
'C1ORF101 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S2103.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
C1ORF101 MUTATED 6 3 3
C1ORF101 WILD-TYPE 73 82 78
'C1ORF101 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S2104.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
C1ORF101 MUTATED 2 7 3
C1ORF101 WILD-TYPE 57 100 76
'C1ORF101 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S2105.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
C1ORF101 MUTATED 5 4 2
C1ORF101 WILD-TYPE 73 67 89
'C1ORF101 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S2106.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
C1ORF101 MUTATED 2 3 2 4
C1ORF101 WILD-TYPE 44 54 64 67
'C1ORF101 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S2107.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
C1ORF101 MUTATED 0 2 1
C1ORF101 WILD-TYPE 55 33 25
'C1ORF101 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S2108.  Gene #194: 'C1ORF101 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
C1ORF101 MUTATED 1 0 2
C1ORF101 WILD-TYPE 42 46 25
'MBOAT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S2109.  Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
MBOAT2 MUTATED 5 0 1 1 0
MBOAT2 WILD-TYPE 151 23 53 6 2
'MBOAT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S2110.  Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
MBOAT2 MUTATED 1 1 3
MBOAT2 WILD-TYPE 42 38 50
'MBOAT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S2111.  Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
MBOAT2 MUTATED 1 2 2 0 0 0
MBOAT2 WILD-TYPE 38 34 35 10 40 24
'MBOAT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S2112.  Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
MBOAT2 MUTATED 3 0 2 0
MBOAT2 WILD-TYPE 62 64 38 17
'MBOAT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S2113.  Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
MBOAT2 MUTATED 4 1 2
MBOAT2 WILD-TYPE 75 84 79
'MBOAT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S2114.  Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
MBOAT2 MUTATED 1 4 2
MBOAT2 WILD-TYPE 58 103 77
'MBOAT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2115.  Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
MBOAT2 MUTATED 2 2 2
MBOAT2 WILD-TYPE 76 69 89
'MBOAT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S2116.  Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
MBOAT2 MUTATED 0 2 1 3
MBOAT2 WILD-TYPE 46 55 65 68
'MBOAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S2117.  Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
MBOAT2 MUTATED 2 2 0
MBOAT2 WILD-TYPE 53 33 26
'MBOAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S2118.  Gene #195: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
MBOAT2 MUTATED 2 1 1
MBOAT2 WILD-TYPE 41 45 26
'CHD4 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.0989 (Fisher's exact test), Q value = 1

Table S2119.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
CHD4 MUTATED 1 6 0 2
CHD4 WILD-TYPE 11 12 11 8
'CHD4 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S2120.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
CHD4 MUTATED 2 4 0 1 2
CHD4 WILD-TYPE 10 6 7 6 13
'CHD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S2121.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
CHD4 MUTATED 25 1 7 2 0
CHD4 WILD-TYPE 131 22 47 5 2
'CHD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S2122.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
CHD4 MUTATED 7 4 8
CHD4 WILD-TYPE 36 35 45
'CHD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.983 (Fisher's exact test), Q value = 1

Table S2123.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
CHD4 MUTATED 7 6 5 1 5 3
CHD4 WILD-TYPE 32 30 32 9 35 21
'CHD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S2124.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
CHD4 MUTATED 11 9 3 4
CHD4 WILD-TYPE 54 55 37 13
'CHD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S2125.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
CHD4 MUTATED 15 10 10
CHD4 WILD-TYPE 64 75 71
'CHD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S2126.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
CHD4 MUTATED 9 16 10
CHD4 WILD-TYPE 50 91 69
'CHD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S2127.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
CHD4 MUTATED 12 9 9
CHD4 WILD-TYPE 66 62 82
'CHD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S2128.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
CHD4 MUTATED 5 9 7 9
CHD4 WILD-TYPE 41 48 59 62
'CHD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S2129.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
CHD4 MUTATED 10 4 2
CHD4 WILD-TYPE 45 31 24
'CHD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S2130.  Gene #196: 'CHD4 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
CHD4 MUTATED 8 4 4
CHD4 WILD-TYPE 35 42 23
'SESN3 MUTATION STATUS' versus 'MRNA_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S2131.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #1: 'MRNA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 12 18 11 10
SESN3 MUTATED 2 2 0 0
SESN3 WILD-TYPE 10 16 11 10
'SESN3 MUTATION STATUS' versus 'MRNA_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S2132.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #2: 'MRNA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 12 10 7 7 15
SESN3 MUTATED 2 0 1 1 0
SESN3 WILD-TYPE 10 10 6 6 15
'SESN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0652 (Fisher's exact test), Q value = 1

Table S2133.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #3: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 156 23 54 7 2
SESN3 MUTATED 12 0 0 1 0
SESN3 WILD-TYPE 144 23 54 6 2
'SESN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S2134.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #4: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 39 53
SESN3 MUTATED 1 1 5
SESN3 WILD-TYPE 42 38 48
'SESN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S2135.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #5: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 39 36 37 10 40 24
SESN3 MUTATED 3 2 3 1 1 0
SESN3 WILD-TYPE 36 34 34 9 39 24
'SESN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S2136.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #6: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 65 64 40 17
SESN3 MUTATED 3 3 4 0
SESN3 WILD-TYPE 62 61 36 17
'SESN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S2137.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #7: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 79 85 81
SESN3 MUTATED 3 6 4
SESN3 WILD-TYPE 76 79 77
'SESN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0487 (Fisher's exact test), Q value = 1

Table S2138.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 59 107 79
SESN3 MUTATED 0 9 4
SESN3 WILD-TYPE 59 98 75

Figure S274.  Get High-res Image Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #8: 'MRNASEQ_CHIERARCHICAL'

'SESN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S2139.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 78 71 91
SESN3 MUTATED 5 1 6
SESN3 WILD-TYPE 73 70 85
'SESN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S2140.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 46 57 66 71
SESN3 MUTATED 1 3 2 6
SESN3 WILD-TYPE 45 54 64 65
'SESN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S2141.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #11: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 55 35 26
SESN3 MUTATED 4 0 2
SESN3 WILD-TYPE 51 35 24
'SESN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2142.  Gene #197: 'SESN3 MUTATION STATUS' versus Molecular Subtype #12: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 43 46 27
SESN3 MUTATED 2 3 1
SESN3 WILD-TYPE 41 43 26
Methods & Data
Input

  • Mutation data file = transformed.cor.cli.txt

  • Molecular subtypes file = UCEC-TP.transferedmergedcluster.txt

  • Number of patients = 248

  • Number of significantly mutated genes = 197

  • Number of Molecular subtypes = 12

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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