This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 68 focal events and 12 molecular subtypes across 450 patients, 185 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_2q33.1 cnv correlated to 'CN_CNMF'.
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amp_5p13.2 cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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amp_6p21.1 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_7p21.2 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_8p11.23 cnv correlated to 'CN_CNMF'.
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amp_8p11.21 cnv correlated to 'CN_CNMF'.
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amp_8q12.1 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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amp_8q24.21 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_11p15.5 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_13q12.13 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_13q22.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_16p11.2 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_16q12.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_17q12 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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amp_17q24.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_19p13.2 cnv correlated to 'CN_CNMF'.
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amp_19q13.11 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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amp_20p12.1 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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amp_20p11.21 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_20q11.21 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_20q12 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_20q13.12 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_1p36.11 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_1p33 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_1p13.1 cnv correlated to 'CN_CNMF'.
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del_1q43 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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del_4p16.2 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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del_4q22.1 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_4q35.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_5q12.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_5q21.1 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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del_5q22.2 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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del_8p23.3 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_8p22 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_10p15.3 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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del_10q21.1 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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del_10q23.31 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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del_10q25.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_12p13.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_14q31.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_15q11.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_15q15.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_15q21.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_15q22.33 cnv correlated to 'MRNA_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_17p12 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_18p11.31 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_18q12.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_18q21.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_19p13.3 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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del_20p12.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_21q11.2 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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del_22q13.32 cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
amp 20q13 12 | 326 (72%) | 124 |
1e-05 (0.00812) |
1e-05 (0.00812) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.00036 (0.227) |
0.00033 (0.209) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.789 (1.00) |
0.00244 (1.00) |
1 (1.00) |
0.00547 (1.00) |
del 14q31 1 | 150 (33%) | 300 |
1e-05 (0.00812) |
8e-05 (0.0526) |
1e-05 (0.00812) |
2e-05 (0.0136) |
0.00038 (0.239) |
0.0188 (1.00) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.278 (1.00) |
0.0207 (1.00) |
0.266 (1.00) |
0.0146 (1.00) |
amp 11p15 5 | 94 (21%) | 356 |
7e-05 (0.0461) |
0.00549 (1.00) |
1e-05 (0.00812) |
2e-05 (0.0136) |
0.00096 (0.567) |
0.0335 (1.00) |
2e-05 (0.0136) |
1e-05 (0.00812) |
0.106 (1.00) |
1e-05 (0.00812) |
0.941 (1.00) |
0.277 (1.00) |
amp 13q12 13 | 275 (61%) | 175 |
2e-05 (0.0136) |
1e-05 (0.00812) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.00485 (1.00) |
0.0197 (1.00) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.574 (1.00) |
0.812 (1.00) |
0.398 (1.00) |
0.0156 (1.00) |
amp 13q22 1 | 277 (62%) | 173 |
0.00013 (0.0842) |
1e-05 (0.00812) |
1e-05 (0.00812) |
2e-05 (0.0136) |
0.00885 (1.00) |
0.0484 (1.00) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.452 (1.00) |
0.996 (1.00) |
0.397 (1.00) |
0.077 (1.00) |
amp 20q11 21 | 323 (72%) | 127 |
1e-05 (0.00812) |
1e-05 (0.00812) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.00085 (0.507) |
0.00234 (1.00) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.823 (1.00) |
0.0016 (0.918) |
1 (1.00) |
0.00414 (1.00) |
amp 20q12 | 324 (72%) | 126 |
1e-05 (0.00812) |
1e-05 (0.00812) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.00048 (0.298) |
0.0004 (0.251) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.775 (1.00) |
0.00132 (0.764) |
1 (1.00) |
0.00545 (1.00) |
del 17p12 | 254 (56%) | 196 |
1e-05 (0.00812) |
1e-05 (0.00812) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.0122 (1.00) |
0.00124 (0.72) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.668 (1.00) |
0.0216 (1.00) |
0.604 (1.00) |
0.00141 (0.815) |
del 18p11 31 | 246 (55%) | 204 |
1e-05 (0.00812) |
1e-05 (0.00812) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.00071 (0.428) |
0.01 (1.00) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.834 (1.00) |
0.0107 (1.00) |
0.16 (1.00) |
0.00303 (1.00) |
del 18q12 2 | 274 (61%) | 176 |
1e-05 (0.00812) |
1e-05 (0.00812) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.004 (1.00) |
0.00128 (0.742) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.916 (1.00) |
0.0206 (1.00) |
0.152 (1.00) |
0.00503 (1.00) |
del 18q21 2 | 287 (64%) | 163 |
1e-05 (0.00812) |
1e-05 (0.00812) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.00072 (0.433) |
0.0005 (0.31) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.382 (1.00) |
0.0351 (1.00) |
0.0928 (1.00) |
0.00777 (1.00) |
amp 7p21 2 | 255 (57%) | 195 |
0.00972 (1.00) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.00013 (0.0842) |
0.00118 (0.693) |
0.00167 (0.957) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.544 (1.00) |
0.456 (1.00) |
0.841 (1.00) |
0.0341 (1.00) |
amp 20p11 21 | 252 (56%) | 198 |
0.00218 (1.00) |
1e-05 (0.00812) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.00362 (1.00) |
0.103 (1.00) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.166 (1.00) |
0.0366 (1.00) |
0.919 (1.00) |
0.0493 (1.00) |
del 1p36 11 | 168 (37%) | 282 |
0.0001 (0.0652) |
0.00798 (1.00) |
1e-05 (0.00812) |
2e-05 (0.0136) |
0.0221 (1.00) |
0.0183 (1.00) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.664 (1.00) |
0.0211 (1.00) |
0.921 (1.00) |
0.258 (1.00) |
del 8p23 3 | 189 (42%) | 261 |
0.0121 (1.00) |
0.00018 (0.116) |
1e-05 (0.00812) |
2e-05 (0.0136) |
0.00439 (1.00) |
0.00829 (1.00) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.219 (1.00) |
0.0519 (1.00) |
0.892 (1.00) |
0.0441 (1.00) |
del 8p22 | 203 (45%) | 247 |
0.00489 (1.00) |
0.00014 (0.0904) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.00743 (1.00) |
0.00115 (0.676) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.453 (1.00) |
0.0146 (1.00) |
0.762 (1.00) |
0.0484 (1.00) |
del 15q22 33 | 161 (36%) | 289 |
0.00032 (0.203) |
0.00054 (0.332) |
1e-05 (0.00812) |
0.00024 (0.153) |
0.0744 (1.00) |
0.032 (1.00) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.787 (1.00) |
0.853 (1.00) |
0.102 (1.00) |
0.0802 (1.00) |
amp 16q12 1 | 111 (25%) | 339 |
5e-05 (0.0334) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.0564 (1.00) |
0.11 (1.00) |
0.187 (1.00) |
0.00088 (0.524) |
1e-05 (0.00812) |
0.975 (1.00) |
0.0827 (1.00) |
0.555 (1.00) |
0.0236 (1.00) |
amp 17q24 1 | 106 (24%) | 344 |
0.0168 (1.00) |
0.00763 (1.00) |
1e-05 (0.00812) |
0.00025 (0.159) |
0.0627 (1.00) |
0.00212 (1.00) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.0122 (1.00) |
0.0543 (1.00) |
0.211 (1.00) |
0.534 (1.00) |
del 4q22 1 | 151 (34%) | 299 |
0.00036 (0.227) |
0.0044 (1.00) |
1e-05 (0.00812) |
5e-05 (0.0334) |
0.104 (1.00) |
0.155 (1.00) |
0.00141 (0.815) |
1e-05 (0.00812) |
0.39 (1.00) |
0.173 (1.00) |
0.318 (1.00) |
0.206 (1.00) |
del 4q35 1 | 159 (35%) | 291 |
0.00119 (0.697) |
0.0076 (1.00) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.0132 (1.00) |
0.297 (1.00) |
0.00015 (0.0964) |
1e-05 (0.00812) |
0.362 (1.00) |
0.414 (1.00) |
0.548 (1.00) |
0.913 (1.00) |
del 10q25 2 | 109 (24%) | 341 |
0.124 (1.00) |
0.0173 (1.00) |
1e-05 (0.00812) |
9e-05 (0.0589) |
0.00626 (1.00) |
0.0876 (1.00) |
2e-05 (0.0136) |
1e-05 (0.00812) |
0.962 (1.00) |
0.486 (1.00) |
0.53 (1.00) |
0.738 (1.00) |
del 22q13 32 | 160 (36%) | 290 |
0.00053 (0.326) |
0.00024 (0.153) |
1e-05 (0.00812) |
0.00067 (0.405) |
0.113 (1.00) |
0.2 (1.00) |
0.00021 (0.134) |
1e-05 (0.00812) |
0.417 (1.00) |
0.792 (1.00) |
0.732 (1.00) |
0.544 (1.00) |
amp 6p21 1 | 96 (21%) | 354 |
0.266 (1.00) |
5e-05 (0.0334) |
1e-05 (0.00812) |
0.0961 (1.00) |
0.506 (1.00) |
0.7 (1.00) |
0.0094 (1.00) |
9e-05 (0.0589) |
0.706 (1.00) |
0.774 (1.00) |
0.309 (1.00) |
0.397 (1.00) |
amp 8q24 21 | 260 (58%) | 190 |
0.561 (1.00) |
0.0282 (1.00) |
1e-05 (0.00812) |
0.00059 (0.359) |
0.0395 (1.00) |
0.0132 (1.00) |
0.00036 (0.227) |
6e-05 (0.0397) |
0.712 (1.00) |
0.0384 (1.00) |
0.265 (1.00) |
0.0157 (1.00) |
amp 16p11 2 | 126 (28%) | 324 |
0.00041 (0.257) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.0255 (1.00) |
0.0305 (1.00) |
0.124 (1.00) |
0.00047 (0.292) |
1e-05 (0.00812) |
0.892 (1.00) |
0.142 (1.00) |
0.959 (1.00) |
0.0611 (1.00) |
del 1p33 | 123 (27%) | 327 |
0.0155 (1.00) |
0.56 (1.00) |
1e-05 (0.00812) |
0.00019 (0.122) |
0.83 (1.00) |
0.494 (1.00) |
0.00061 (0.37) |
0.0001 (0.0652) |
0.717 (1.00) |
0.152 (1.00) |
1 (1.00) |
0.351 (1.00) |
del 5q12 1 | 105 (23%) | 345 |
0.00106 (0.624) |
0.00355 (1.00) |
1e-05 (0.00812) |
0.0107 (1.00) |
0.00096 (0.567) |
0.033 (1.00) |
0.00028 (0.178) |
6e-05 (0.0397) |
0.705 (1.00) |
0.566 (1.00) |
1 (1.00) |
0.139 (1.00) |
del 12p13 2 | 60 (13%) | 390 |
0.00922 (1.00) |
0.00316 (1.00) |
1e-05 (0.00812) |
0.00794 (1.00) |
0.308 (1.00) |
0.918 (1.00) |
2e-05 (0.0136) |
1e-05 (0.00812) |
0.794 (1.00) |
0.354 (1.00) |
0.224 (1.00) |
0.00218 (1.00) |
del 15q11 2 | 177 (39%) | 273 |
0.00042 (0.262) |
0.00071 (0.428) |
1e-05 (0.00812) |
0.0005 (0.31) |
0.0208 (1.00) |
0.0638 (1.00) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.98 (1.00) |
0.779 (1.00) |
0.258 (1.00) |
0.27 (1.00) |
del 15q15 2 | 172 (38%) | 278 |
0.00158 (0.908) |
0.00065 (0.393) |
1e-05 (0.00812) |
0.00041 (0.257) |
0.00927 (1.00) |
0.025 (1.00) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.923 (1.00) |
0.555 (1.00) |
0.154 (1.00) |
0.167 (1.00) |
del 15q21 1 | 169 (38%) | 281 |
0.019 (1.00) |
0.0148 (1.00) |
1e-05 (0.00812) |
0.00092 (0.545) |
0.00943 (1.00) |
0.0537 (1.00) |
1e-05 (0.00812) |
1e-05 (0.00812) |
0.885 (1.00) |
0.677 (1.00) |
0.137 (1.00) |
0.129 (1.00) |
del 20p12 1 | 86 (19%) | 364 |
0.0492 (1.00) |
0.0288 (1.00) |
2e-05 (0.0136) |
0.00081 (0.484) |
0.727 (1.00) |
0.197 (1.00) |
1e-05 (0.00812) |
2e-05 (0.0136) |
0.104 (1.00) |
0.0106 (1.00) |
0.802 (1.00) |
0.0475 (1.00) |
amp 8q12 1 | 236 (52%) | 214 |
0.49 (1.00) |
0.00576 (1.00) |
1e-05 (0.00812) |
0.00698 (1.00) |
0.00994 (1.00) |
0.00346 (1.00) |
0.00192 (1.00) |
0.00014 (0.0904) |
0.383 (1.00) |
0.0372 (1.00) |
0.275 (1.00) |
0.0128 (1.00) |
amp 17q12 | 114 (25%) | 336 |
0.0257 (1.00) |
0.0143 (1.00) |
1e-05 (0.00812) |
0.00054 (0.332) |
0.14 (1.00) |
0.00245 (1.00) |
5e-05 (0.0334) |
0.00089 (0.529) |
0.0375 (1.00) |
0.0141 (1.00) |
0.533 (1.00) |
0.56 (1.00) |
amp 19q13 11 | 95 (21%) | 355 |
0.183 (1.00) |
0.0313 (1.00) |
8e-05 (0.0526) |
0.0945 (1.00) |
0.0341 (1.00) |
0.313 (1.00) |
0.0458 (1.00) |
0.00014 (0.0904) |
0.46 (1.00) |
0.557 (1.00) |
0.0177 (1.00) |
0.00156 (0.899) |
amp 20p12 1 | 208 (46%) | 242 |
0.0468 (1.00) |
0.00088 (0.524) |
1e-05 (0.00812) |
0.128 (1.00) |
0.00927 (1.00) |
0.265 (1.00) |
0.00325 (1.00) |
1e-05 (0.00812) |
0.262 (1.00) |
0.34 (1.00) |
0.278 (1.00) |
0.522 (1.00) |
del 1q43 | 54 (12%) | 396 |
0.0616 (1.00) |
0.501 (1.00) |
1e-05 (0.00812) |
0.031 (1.00) |
0.473 (1.00) |
0.717 (1.00) |
0.0005 (0.31) |
6e-05 (0.0397) |
0.139 (1.00) |
0.00057 (0.348) |
0.0277 (1.00) |
0.961 (1.00) |
del 4p16 2 | 139 (31%) | 311 |
0.00073 (0.438) |
0.00173 (0.99) |
1e-05 (0.00812) |
0.00058 (0.354) |
0.0262 (1.00) |
0.16 (1.00) |
0.00194 (1.00) |
1e-05 (0.00812) |
0.354 (1.00) |
0.447 (1.00) |
0.147 (1.00) |
0.235 (1.00) |
del 5q21 1 | 127 (28%) | 323 |
0.276 (1.00) |
0.0442 (1.00) |
1e-05 (0.00812) |
0.0127 (1.00) |
0.0247 (1.00) |
0.4 (1.00) |
0.00122 (0.711) |
2e-05 (0.0136) |
0.944 (1.00) |
0.89 (1.00) |
0.87 (1.00) |
0.497 (1.00) |
del 5q22 2 | 130 (29%) | 320 |
0.0142 (1.00) |
0.00924 (1.00) |
1e-05 (0.00812) |
0.0316 (1.00) |
0.0477 (1.00) |
0.343 (1.00) |
0.00058 (0.354) |
2e-05 (0.0136) |
0.913 (1.00) |
0.277 (1.00) |
0.616 (1.00) |
0.455 (1.00) |
del 10p15 3 | 80 (18%) | 370 |
0.115 (1.00) |
0.105 (1.00) |
1e-05 (0.00812) |
0.00074 (0.443) |
0.0222 (1.00) |
0.141 (1.00) |
0.00123 (0.716) |
8e-05 (0.0526) |
0.454 (1.00) |
0.177 (1.00) |
0.52 (1.00) |
0.0218 (1.00) |
del 10q21 1 | 98 (22%) | 352 |
0.00356 (1.00) |
0.0289 (1.00) |
1e-05 (0.00812) |
0.00982 (1.00) |
0.0696 (1.00) |
0.259 (1.00) |
0.0018 (1.00) |
0.0001 (0.0652) |
0.753 (1.00) |
0.49 (1.00) |
0.754 (1.00) |
0.732 (1.00) |
del 10q23 31 | 109 (24%) | 341 |
0.0969 (1.00) |
0.0623 (1.00) |
1e-05 (0.00812) |
0.00344 (1.00) |
0.146 (1.00) |
0.47 (1.00) |
0.00044 (0.274) |
9e-05 (0.0589) |
0.58 (1.00) |
0.136 (1.00) |
0.35 (1.00) |
0.399 (1.00) |
del 19p13 3 | 63 (14%) | 387 |
0.132 (1.00) |
0.125 (1.00) |
4e-05 (0.0268) |
0.11 (1.00) |
0.981 (1.00) |
0.21 (1.00) |
0.0794 (1.00) |
0.00021 (0.134) |
0.654 (1.00) |
0.00853 (1.00) |
0.486 (1.00) |
0.283 (1.00) |
del 21q11 2 | 141 (31%) | 309 |
0.0159 (1.00) |
0.0692 (1.00) |
1e-05 (0.00812) |
0.0511 (1.00) |
0.161 (1.00) |
0.821 (1.00) |
0.00064 (0.388) |
0.0001 (0.0652) |
0.936 (1.00) |
0.126 (1.00) |
0.67 (1.00) |
0.35 (1.00) |
amp 2q33 1 | 92 (20%) | 358 |
0.165 (1.00) |
0.114 (1.00) |
5e-05 (0.0334) |
0.00459 (1.00) |
0.0431 (1.00) |
0.0495 (1.00) |
0.0219 (1.00) |
0.00089 (0.529) |
0.293 (1.00) |
0.108 (1.00) |
0.951 (1.00) |
0.673 (1.00) |
amp 5p13 2 | 88 (20%) | 362 |
0.379 (1.00) |
0.193 (1.00) |
0.0012 (0.702) |
0.546 (1.00) |
0.00458 (1.00) |
0.914 (1.00) |
0.243 (1.00) |
0.00027 (0.171) |
0.73 (1.00) |
0.664 (1.00) |
0.754 (1.00) |
0.584 (1.00) |
amp 8p11 23 | 158 (35%) | 292 |
0.302 (1.00) |
0.109 (1.00) |
1e-05 (0.00812) |
0.386 (1.00) |
0.765 (1.00) |
0.625 (1.00) |
0.00832 (1.00) |
0.0312 (1.00) |
0.358 (1.00) |
0.266 (1.00) |
0.505 (1.00) |
0.127 (1.00) |
amp 8p11 21 | 188 (42%) | 262 |
0.445 (1.00) |
0.0186 (1.00) |
1e-05 (0.00812) |
0.289 (1.00) |
0.242 (1.00) |
0.0245 (1.00) |
0.0182 (1.00) |
0.00507 (1.00) |
0.718 (1.00) |
0.323 (1.00) |
0.538 (1.00) |
0.104 (1.00) |
amp 19p13 2 | 75 (17%) | 375 |
0.0679 (1.00) |
0.0543 (1.00) |
5e-05 (0.0334) |
0.0128 (1.00) |
0.675 (1.00) |
0.383 (1.00) |
0.254 (1.00) |
0.00181 (1.00) |
0.348 (1.00) |
0.436 (1.00) |
0.104 (1.00) |
0.0229 (1.00) |
del 1p13 1 | 119 (26%) | 331 |
0.0852 (1.00) |
0.546 (1.00) |
1e-05 (0.00812) |
0.0118 (1.00) |
0.679 (1.00) |
0.893 (1.00) |
0.00812 (1.00) |
0.0005 (0.31) |
0.799 (1.00) |
0.166 (1.00) |
0.953 (1.00) |
0.643 (1.00) |
amp 5q22 3 | 46 (10%) | 404 |
0.922 (1.00) |
1 (1.00) |
0.0121 (1.00) |
0.805 (1.00) |
0.327 (1.00) |
0.641 (1.00) |
0.29 (1.00) |
0.123 (1.00) |
0.95 (1.00) |
0.701 (1.00) |
0.356 (1.00) |
0.333 (1.00) |
amp 12p13 33 | 111 (25%) | 339 |
0.656 (1.00) |
0.796 (1.00) |
0.0162 (1.00) |
0.0489 (1.00) |
0.428 (1.00) |
0.875 (1.00) |
0.374 (1.00) |
0.82 (1.00) |
0.512 (1.00) |
0.796 (1.00) |
0.629 (1.00) |
0.848 (1.00) |
amp 17p11 2 | 44 (10%) | 406 |
0.265 (1.00) |
0.00394 (1.00) |
0.041 (1.00) |
0.0868 (1.00) |
0.00407 (1.00) |
0.0609 (1.00) |
0.00653 (1.00) |
0.16 (1.00) |
0.545 (1.00) |
0.803 (1.00) |
0.173 (1.00) |
0.0649 (1.00) |
del 2p21 | 17 (4%) | 433 |
0.593 (1.00) |
0.865 (1.00) |
1 (1.00) |
0.765 (1.00) |
0.808 (1.00) |
0.714 (1.00) |
0.161 (1.00) |
0.207 (1.00) |
0.0921 (1.00) |
0.347 (1.00) |
||
del 2q22 1 | 24 (5%) | 426 |
0.973 (1.00) |
0.538 (1.00) |
0.482 (1.00) |
0.724 (1.00) |
0.0858 (1.00) |
0.363 (1.00) |
0.121 (1.00) |
0.311 (1.00) |
0.249 (1.00) |
0.166 (1.00) |
1 (1.00) |
0.849 (1.00) |
del 3p26 2 | 72 (16%) | 378 |
0.221 (1.00) |
0.234 (1.00) |
0.00054 (0.332) |
0.134 (1.00) |
0.729 (1.00) |
0.501 (1.00) |
0.212 (1.00) |
0.0542 (1.00) |
0.739 (1.00) |
0.789 (1.00) |
0.536 (1.00) |
0.41 (1.00) |
del 3p14 2 | 88 (20%) | 362 |
0.554 (1.00) |
0.835 (1.00) |
0.0446 (1.00) |
0.274 (1.00) |
0.528 (1.00) |
0.0413 (1.00) |
0.0964 (1.00) |
0.135 (1.00) |
0.652 (1.00) |
0.699 (1.00) |
0.127 (1.00) |
0.706 (1.00) |
del 3q26 31 | 46 (10%) | 404 |
0.642 (1.00) |
0.539 (1.00) |
0.0645 (1.00) |
0.662 (1.00) |
0.601 (1.00) |
0.835 (1.00) |
0.696 (1.00) |
0.15 (1.00) |
0.157 (1.00) |
0.818 (1.00) |
0.0918 (1.00) |
0.704 (1.00) |
del 6p25 3 | 56 (12%) | 394 |
0.85 (1.00) |
0.735 (1.00) |
0.197 (1.00) |
0.0302 (1.00) |
0.0416 (1.00) |
0.572 (1.00) |
1 (1.00) |
0.827 (1.00) |
0.667 (1.00) |
0.939 (1.00) |
0.0552 (1.00) |
0.0435 (1.00) |
del 6q26 | 62 (14%) | 388 |
0.586 (1.00) |
0.4 (1.00) |
0.635 (1.00) |
0.477 (1.00) |
0.0829 (1.00) |
0.22 (1.00) |
0.166 (1.00) |
0.431 (1.00) |
0.696 (1.00) |
0.938 (1.00) |
0.441 (1.00) |
0.0613 (1.00) |
del 7q31 1 | 13 (3%) | 437 |
1 (1.00) |
0.601 (1.00) |
0.0896 (1.00) |
0.601 (1.00) |
0.165 (1.00) |
0.465 (1.00) |
0.385 (1.00) |
0.792 (1.00) |
0.794 (1.00) |
0.829 (1.00) |
||
del 8q11 1 | 30 (7%) | 420 |
0.261 (1.00) |
0.0969 (1.00) |
0.0467 (1.00) |
0.628 (1.00) |
0.268 (1.00) |
0.166 (1.00) |
0.318 (1.00) |
0.0197 (1.00) |
0.2 (1.00) |
0.295 (1.00) |
0.662 (1.00) |
0.891 (1.00) |
del 9p21 3 | 62 (14%) | 388 |
0.455 (1.00) |
0.0893 (1.00) |
0.00121 (0.707) |
0.0729 (1.00) |
0.823 (1.00) |
0.41 (1.00) |
0.16 (1.00) |
0.00279 (1.00) |
0.618 (1.00) |
0.258 (1.00) |
0.202 (1.00) |
0.582 (1.00) |
del 16p13 3 | 56 (12%) | 394 |
0.228 (1.00) |
0.0618 (1.00) |
0.0427 (1.00) |
0.0584 (1.00) |
0.393 (1.00) |
0.514 (1.00) |
0.0419 (1.00) |
0.0841 (1.00) |
0.848 (1.00) |
0.701 (1.00) |
0.617 (1.00) |
1 (1.00) |
del 16q23 1 | 61 (14%) | 389 |
0.27 (1.00) |
0.00566 (1.00) |
0.241 (1.00) |
0.852 (1.00) |
0.14 (1.00) |
0.614 (1.00) |
0.628 (1.00) |
0.0297 (1.00) |
0.528 (1.00) |
0.463 (1.00) |
0.723 (1.00) |
0.481 (1.00) |
del 17q24 3 | 69 (15%) | 381 |
0.0952 (1.00) |
0.515 (1.00) |
0.00053 (0.326) |
0.0204 (1.00) |
0.867 (1.00) |
0.18 (1.00) |
0.296 (1.00) |
0.0386 (1.00) |
0.724 (1.00) |
0.97 (1.00) |
0.81 (1.00) |
0.433 (1.00) |
P value = 5e-05 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
AMP PEAK 1(2Q33.1) MUTATED | 25 | 56 | 11 |
AMP PEAK 1(2Q33.1) WILD-TYPE | 178 | 126 | 54 |
P value = 0.00027 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
AMP PEAK 2(5P13.2) MUTATED | 15 | 24 | 8 | 33 | 4 |
AMP PEAK 2(5P13.2) WILD-TYPE | 91 | 50 | 82 | 95 | 32 |
P value = 5e-05 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 72 | 32 |
AMP PEAK 4(6P21.1) MUTATED | 3 | 10 | 16 |
AMP PEAK 4(6P21.1) WILD-TYPE | 39 | 62 | 16 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
AMP PEAK 4(6P21.1) MUTATED | 17 | 65 | 14 |
AMP PEAK 4(6P21.1) WILD-TYPE | 186 | 117 | 51 |
P value = 9e-05 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
AMP PEAK 4(6P21.1) MUTATED | 25 | 26 | 7 | 33 | 3 |
AMP PEAK 4(6P21.1) WILD-TYPE | 81 | 48 | 83 | 95 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 72 | 32 |
AMP PEAK 5(7P21.2) MUTATED | 10 | 34 | 26 |
AMP PEAK 5(7P21.2) WILD-TYPE | 32 | 38 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
AMP PEAK 5(7P21.2) MUTATED | 73 | 135 | 47 |
AMP PEAK 5(7P21.2) WILD-TYPE | 130 | 47 | 18 |
P value = 0.00013 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 92 | 71 |
AMP PEAK 5(7P21.2) MUTATED | 87 | 44 | 37 |
AMP PEAK 5(7P21.2) WILD-TYPE | 31 | 48 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
AMP PEAK 5(7P21.2) MUTATED | 101 | 68 | 75 |
AMP PEAK 5(7P21.2) WILD-TYPE | 39 | 83 | 68 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
AMP PEAK 5(7P21.2) MUTATED | 72 | 56 | 31 | 76 | 9 |
AMP PEAK 5(7P21.2) WILD-TYPE | 34 | 18 | 59 | 52 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
AMP PEAK 6(8P11.23) MUTATED | 49 | 59 | 50 |
AMP PEAK 6(8P11.23) WILD-TYPE | 154 | 123 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
AMP PEAK 7(8P11.21) MUTATED | 55 | 77 | 56 |
AMP PEAK 7(8P11.21) WILD-TYPE | 148 | 105 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
AMP PEAK 8(8Q12.1) MUTATED | 67 | 107 | 62 |
AMP PEAK 8(8Q12.1) WILD-TYPE | 136 | 75 | 3 |
P value = 0.00014 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
AMP PEAK 8(8Q12.1) MUTATED | 63 | 48 | 36 | 70 | 9 |
AMP PEAK 8(8Q12.1) WILD-TYPE | 43 | 26 | 54 | 58 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
AMP PEAK 9(8Q24.21) MUTATED | 75 | 121 | 64 |
AMP PEAK 9(8Q24.21) WILD-TYPE | 128 | 61 | 1 |
P value = 0.00036 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
AMP PEAK 9(8Q24.21) MUTATED | 99 | 75 | 75 |
AMP PEAK 9(8Q24.21) WILD-TYPE | 41 | 76 | 68 |
P value = 6e-05 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
AMP PEAK 9(8Q24.21) MUTATED | 67 | 52 | 41 | 79 | 10 |
AMP PEAK 9(8Q24.21) WILD-TYPE | 39 | 22 | 49 | 49 | 26 |
P value = 7e-05 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
AMP PEAK 10(11P15.5) MUTATED | 2 | 18 | 3 | 12 |
AMP PEAK 10(11P15.5) WILD-TYPE | 33 | 43 | 26 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
AMP PEAK 10(11P15.5) MUTATED | 22 | 55 | 17 |
AMP PEAK 10(11P15.5) WILD-TYPE | 181 | 127 | 48 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 92 | 71 |
AMP PEAK 10(11P15.5) MUTATED | 36 | 6 | 11 |
AMP PEAK 10(11P15.5) WILD-TYPE | 82 | 86 | 60 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
AMP PEAK 10(11P15.5) MUTATED | 39 | 13 | 38 |
AMP PEAK 10(11P15.5) WILD-TYPE | 101 | 138 | 105 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
AMP PEAK 10(11P15.5) MUTATED | 24 | 20 | 4 | 42 | 0 |
AMP PEAK 10(11P15.5) WILD-TYPE | 82 | 54 | 86 | 86 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 135 | 50 | 77 | 135 |
AMP PEAK 10(11P15.5) MUTATED | 8 | 12 | 46 | 18 |
AMP PEAK 10(11P15.5) WILD-TYPE | 127 | 38 | 31 | 117 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
AMP PEAK 12(13Q12.13) MUTATED | 15 | 51 | 10 | 16 |
AMP PEAK 12(13Q12.13) WILD-TYPE | 20 | 10 | 19 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 72 | 32 |
AMP PEAK 12(13Q12.13) MUTATED | 13 | 49 | 30 |
AMP PEAK 12(13Q12.13) WILD-TYPE | 29 | 23 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
AMP PEAK 12(13Q12.13) MUTATED | 66 | 166 | 43 |
AMP PEAK 12(13Q12.13) WILD-TYPE | 137 | 16 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 92 | 71 |
AMP PEAK 12(13Q12.13) MUTATED | 93 | 42 | 37 |
AMP PEAK 12(13Q12.13) WILD-TYPE | 25 | 50 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
AMP PEAK 12(13Q12.13) MUTATED | 112 | 65 | 88 |
AMP PEAK 12(13Q12.13) WILD-TYPE | 28 | 86 | 55 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
AMP PEAK 12(13Q12.13) MUTATED | 75 | 62 | 25 | 94 | 9 |
AMP PEAK 12(13Q12.13) WILD-TYPE | 31 | 12 | 65 | 34 | 27 |
P value = 0.00013 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
AMP PEAK 13(13Q22.1) MUTATED | 15 | 49 | 12 | 15 |
AMP PEAK 13(13Q22.1) WILD-TYPE | 20 | 12 | 17 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 72 | 32 |
AMP PEAK 13(13Q22.1) MUTATED | 13 | 48 | 30 |
AMP PEAK 13(13Q22.1) WILD-TYPE | 29 | 24 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
AMP PEAK 13(13Q22.1) MUTATED | 71 | 162 | 44 |
AMP PEAK 13(13Q22.1) WILD-TYPE | 132 | 20 | 21 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 92 | 71 |
AMP PEAK 13(13Q22.1) MUTATED | 93 | 45 | 37 |
AMP PEAK 13(13Q22.1) WILD-TYPE | 25 | 47 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
AMP PEAK 13(13Q22.1) MUTATED | 112 | 69 | 87 |
AMP PEAK 13(13Q22.1) WILD-TYPE | 28 | 82 | 56 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
AMP PEAK 13(13Q22.1) MUTATED | 76 | 61 | 29 | 92 | 10 |
AMP PEAK 13(13Q22.1) WILD-TYPE | 30 | 13 | 61 | 36 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 72 | 32 |
AMP PEAK 14(16P11.2) MUTATED | 6 | 16 | 23 |
AMP PEAK 14(16P11.2) WILD-TYPE | 36 | 56 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
AMP PEAK 14(16P11.2) MUTATED | 20 | 92 | 14 |
AMP PEAK 14(16P11.2) WILD-TYPE | 183 | 90 | 51 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
AMP PEAK 14(16P11.2) MUTATED | 26 | 31 | 10 | 52 | 2 |
AMP PEAK 14(16P11.2) WILD-TYPE | 80 | 43 | 80 | 76 | 34 |
P value = 5e-05 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
AMP PEAK 15(16Q12.1) MUTATED | 4 | 22 | 2 | 12 |
AMP PEAK 15(16Q12.1) WILD-TYPE | 31 | 39 | 27 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 72 | 32 |
AMP PEAK 15(16Q12.1) MUTATED | 3 | 17 | 20 |
AMP PEAK 15(16Q12.1) WILD-TYPE | 39 | 55 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
AMP PEAK 15(16Q12.1) MUTATED | 16 | 85 | 10 |
AMP PEAK 15(16Q12.1) WILD-TYPE | 187 | 97 | 55 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
AMP PEAK 15(16Q12.1) MUTATED | 22 | 30 | 8 | 47 | 0 |
AMP PEAK 15(16Q12.1) WILD-TYPE | 84 | 44 | 82 | 81 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
AMP PEAK 17(17Q12) MUTATED | 24 | 67 | 23 |
AMP PEAK 17(17Q12) WILD-TYPE | 179 | 115 | 42 |
P value = 5e-05 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
AMP PEAK 17(17Q12) MUTATED | 53 | 22 | 33 |
AMP PEAK 17(17Q12) WILD-TYPE | 87 | 129 | 110 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
AMP PEAK 18(17Q24.1) MUTATED | 19 | 64 | 23 |
AMP PEAK 18(17Q24.1) WILD-TYPE | 184 | 118 | 42 |
P value = 0.00025 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 92 | 71 |
AMP PEAK 18(17Q24.1) MUTATED | 43 | 18 | 8 |
AMP PEAK 18(17Q24.1) WILD-TYPE | 75 | 74 | 63 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
AMP PEAK 18(17Q24.1) MUTATED | 53 | 18 | 31 |
AMP PEAK 18(17Q24.1) WILD-TYPE | 87 | 133 | 112 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
AMP PEAK 18(17Q24.1) MUTATED | 38 | 18 | 8 | 36 | 2 |
AMP PEAK 18(17Q24.1) WILD-TYPE | 68 | 56 | 82 | 92 | 34 |
P value = 5e-05 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
AMP PEAK 19(19P13.2) MUTATED | 18 | 48 | 9 |
AMP PEAK 19(19P13.2) WILD-TYPE | 185 | 134 | 56 |
P value = 8e-05 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
AMP PEAK 20(19Q13.11) MUTATED | 29 | 57 | 9 |
AMP PEAK 20(19Q13.11) WILD-TYPE | 174 | 125 | 56 |
P value = 0.00014 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
AMP PEAK 20(19Q13.11) MUTATED | 22 | 25 | 13 | 30 | 0 |
AMP PEAK 20(19Q13.11) WILD-TYPE | 84 | 49 | 77 | 98 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
AMP PEAK 21(20P12.1) MUTATED | 66 | 113 | 29 |
AMP PEAK 21(20P12.1) WILD-TYPE | 137 | 69 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
AMP PEAK 21(20P12.1) MUTATED | 53 | 36 | 28 | 78 | 5 |
AMP PEAK 21(20P12.1) WILD-TYPE | 53 | 38 | 62 | 50 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 72 | 32 |
AMP PEAK 22(20P11.21) MUTATED | 11 | 48 | 23 |
AMP PEAK 22(20P11.21) WILD-TYPE | 31 | 24 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
AMP PEAK 22(20P11.21) MUTATED | 69 | 149 | 34 |
AMP PEAK 22(20P11.21) WILD-TYPE | 134 | 33 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 92 | 71 |
AMP PEAK 22(20P11.21) MUTATED | 87 | 40 | 32 |
AMP PEAK 22(20P11.21) WILD-TYPE | 31 | 52 | 39 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
AMP PEAK 22(20P11.21) MUTATED | 102 | 59 | 81 |
AMP PEAK 22(20P11.21) WILD-TYPE | 38 | 92 | 62 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
AMP PEAK 22(20P11.21) MUTATED | 71 | 49 | 29 | 88 | 5 |
AMP PEAK 22(20P11.21) WILD-TYPE | 35 | 25 | 61 | 40 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
AMP PEAK 23(20Q11.21) MUTATED | 13 | 58 | 16 | 18 |
AMP PEAK 23(20Q11.21) WILD-TYPE | 22 | 3 | 13 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 72 | 32 |
AMP PEAK 23(20Q11.21) MUTATED | 12 | 62 | 31 |
AMP PEAK 23(20Q11.21) WILD-TYPE | 30 | 10 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
AMP PEAK 23(20Q11.21) MUTATED | 89 | 181 | 53 |
AMP PEAK 23(20Q11.21) WILD-TYPE | 114 | 1 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 92 | 71 |
AMP PEAK 23(20Q11.21) MUTATED | 112 | 47 | 44 |
AMP PEAK 23(20Q11.21) WILD-TYPE | 6 | 45 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
AMP PEAK 23(20Q11.21) MUTATED | 136 | 72 | 103 |
AMP PEAK 23(20Q11.21) WILD-TYPE | 4 | 79 | 40 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
AMP PEAK 23(20Q11.21) MUTATED | 92 | 68 | 33 | 112 | 6 |
AMP PEAK 23(20Q11.21) WILD-TYPE | 14 | 6 | 57 | 16 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
AMP PEAK 24(20Q12) MUTATED | 12 | 58 | 15 | 18 |
AMP PEAK 24(20Q12) WILD-TYPE | 23 | 3 | 14 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 72 | 32 |
AMP PEAK 24(20Q12) MUTATED | 11 | 61 | 31 |
AMP PEAK 24(20Q12) WILD-TYPE | 31 | 11 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
AMP PEAK 24(20Q12) MUTATED | 88 | 181 | 55 |
AMP PEAK 24(20Q12) WILD-TYPE | 115 | 1 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 92 | 71 |
AMP PEAK 24(20Q12) MUTATED | 112 | 49 | 45 |
AMP PEAK 24(20Q12) WILD-TYPE | 6 | 43 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
AMP PEAK 24(20Q12) MUTATED | 136 | 75 | 101 |
AMP PEAK 24(20Q12) WILD-TYPE | 4 | 76 | 42 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
AMP PEAK 24(20Q12) MUTATED | 92 | 69 | 35 | 111 | 5 |
AMP PEAK 24(20Q12) WILD-TYPE | 14 | 5 | 55 | 17 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
AMP PEAK 25(20Q13.12) MUTATED | 13 | 58 | 16 | 18 |
AMP PEAK 25(20Q13.12) WILD-TYPE | 22 | 3 | 13 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 72 | 32 |
AMP PEAK 25(20Q13.12) MUTATED | 12 | 62 | 31 |
AMP PEAK 25(20Q13.12) WILD-TYPE | 30 | 10 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
AMP PEAK 25(20Q13.12) MUTATED | 88 | 181 | 57 |
AMP PEAK 25(20Q13.12) WILD-TYPE | 115 | 1 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 92 | 71 |
AMP PEAK 25(20Q13.12) MUTATED | 112 | 49 | 45 |
AMP PEAK 25(20Q13.12) WILD-TYPE | 6 | 43 | 26 |
P value = 0.00036 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 127 | 26 | 94 |
AMP PEAK 25(20Q13.12) MUTATED | 64 | 96 | 21 | 51 |
AMP PEAK 25(20Q13.12) WILD-TYPE | 14 | 31 | 5 | 43 |
P value = 0.00033 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 59 | 48 | 56 | 68 | 68 | 26 |
AMP PEAK 25(20Q13.12) MUTATED | 52 | 38 | 42 | 49 | 37 | 14 |
AMP PEAK 25(20Q13.12) WILD-TYPE | 7 | 10 | 14 | 19 | 31 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
AMP PEAK 25(20Q13.12) MUTATED | 136 | 76 | 102 |
AMP PEAK 25(20Q13.12) WILD-TYPE | 4 | 75 | 41 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
AMP PEAK 25(20Q13.12) MUTATED | 92 | 69 | 35 | 112 | 6 |
AMP PEAK 25(20Q13.12) WILD-TYPE | 14 | 5 | 55 | 16 | 30 |
P value = 1e-04 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
DEL PEAK 1(1P36.11) MUTATED | 9 | 36 | 4 | 10 |
DEL PEAK 1(1P36.11) WILD-TYPE | 26 | 25 | 25 | 11 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 1(1P36.11) MUTATED | 40 | 106 | 22 |
DEL PEAK 1(1P36.11) WILD-TYPE | 163 | 76 | 43 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 92 | 71 |
DEL PEAK 1(1P36.11) MUTATED | 61 | 19 | 24 |
DEL PEAK 1(1P36.11) WILD-TYPE | 57 | 73 | 47 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
DEL PEAK 1(1P36.11) MUTATED | 76 | 36 | 52 |
DEL PEAK 1(1P36.11) WILD-TYPE | 64 | 115 | 91 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 1(1P36.11) MUTATED | 48 | 39 | 12 | 61 | 4 |
DEL PEAK 1(1P36.11) WILD-TYPE | 58 | 35 | 78 | 67 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 2(1P33) MUTATED | 32 | 83 | 8 |
DEL PEAK 2(1P33) WILD-TYPE | 171 | 99 | 57 |
P value = 0.00019 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 92 | 71 |
DEL PEAK 2(1P33) MUTATED | 47 | 13 | 19 |
DEL PEAK 2(1P33) WILD-TYPE | 71 | 79 | 52 |
P value = 1e-04 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 2(1P33) MUTATED | 34 | 31 | 10 | 38 | 7 |
DEL PEAK 2(1P33) WILD-TYPE | 72 | 43 | 80 | 90 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 3(1P13.1) MUTATED | 35 | 78 | 6 |
DEL PEAK 3(1P13.1) WILD-TYPE | 168 | 104 | 59 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 4(1Q43) MUTATED | 9 | 37 | 8 |
DEL PEAK 4(1Q43) WILD-TYPE | 194 | 145 | 57 |
P value = 6e-05 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 4(1Q43) MUTATED | 18 | 18 | 2 | 14 | 1 |
DEL PEAK 4(1Q43) WILD-TYPE | 88 | 56 | 88 | 114 | 35 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 10(4P16.2) MUTATED | 31 | 91 | 17 |
DEL PEAK 10(4P16.2) WILD-TYPE | 172 | 91 | 48 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 10(4P16.2) MUTATED | 34 | 35 | 7 | 51 | 5 |
DEL PEAK 10(4P16.2) WILD-TYPE | 72 | 39 | 83 | 77 | 31 |
P value = 0.00036 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
DEL PEAK 11(4Q22.1) MUTATED | 9 | 27 | 2 | 11 |
DEL PEAK 11(4Q22.1) WILD-TYPE | 26 | 34 | 27 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 11(4Q22.1) MUTATED | 34 | 102 | 15 |
DEL PEAK 11(4Q22.1) WILD-TYPE | 169 | 80 | 50 |
P value = 5e-05 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 92 | 71 |
DEL PEAK 11(4Q22.1) MUTATED | 53 | 16 | 25 |
DEL PEAK 11(4Q22.1) WILD-TYPE | 65 | 76 | 46 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 11(4Q22.1) MUTATED | 40 | 37 | 9 | 51 | 5 |
DEL PEAK 11(4Q22.1) WILD-TYPE | 66 | 37 | 81 | 77 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 12(4Q35.1) MUTATED | 34 | 105 | 20 |
DEL PEAK 12(4Q35.1) WILD-TYPE | 169 | 77 | 45 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 92 | 71 |
DEL PEAK 12(4Q35.1) MUTATED | 56 | 13 | 26 |
DEL PEAK 12(4Q35.1) WILD-TYPE | 62 | 79 | 45 |
P value = 0.00015 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
DEL PEAK 12(4Q35.1) MUTATED | 63 | 34 | 54 |
DEL PEAK 12(4Q35.1) WILD-TYPE | 77 | 117 | 89 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 12(4Q35.1) MUTATED | 41 | 37 | 11 | 56 | 6 |
DEL PEAK 12(4Q35.1) WILD-TYPE | 65 | 37 | 79 | 72 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 13(5Q12.1) MUTATED | 19 | 65 | 21 |
DEL PEAK 13(5Q12.1) WILD-TYPE | 184 | 117 | 44 |
P value = 0.00028 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
DEL PEAK 13(5Q12.1) MUTATED | 47 | 21 | 32 |
DEL PEAK 13(5Q12.1) WILD-TYPE | 93 | 130 | 111 |
P value = 6e-05 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 13(5Q12.1) MUTATED | 25 | 28 | 8 | 35 | 4 |
DEL PEAK 13(5Q12.1) WILD-TYPE | 81 | 46 | 82 | 93 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 14(5Q21.1) MUTATED | 27 | 76 | 24 |
DEL PEAK 14(5Q21.1) WILD-TYPE | 176 | 106 | 41 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 14(5Q21.1) MUTATED | 34 | 28 | 10 | 45 | 5 |
DEL PEAK 14(5Q21.1) WILD-TYPE | 72 | 46 | 80 | 83 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 15(5Q22.2) MUTATED | 28 | 76 | 26 |
DEL PEAK 15(5Q22.2) WILD-TYPE | 175 | 106 | 39 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 15(5Q22.2) MUTATED | 37 | 28 | 12 | 44 | 3 |
DEL PEAK 15(5Q22.2) WILD-TYPE | 69 | 46 | 78 | 84 | 33 |
P value = 0.00018 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 72 | 32 |
DEL PEAK 19(8P23.3) MUTATED | 10 | 29 | 23 |
DEL PEAK 19(8P23.3) WILD-TYPE | 32 | 43 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 19(8P23.3) MUTATED | 33 | 108 | 48 |
DEL PEAK 19(8P23.3) WILD-TYPE | 170 | 74 | 17 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 92 | 71 |
DEL PEAK 19(8P23.3) MUTATED | 69 | 24 | 25 |
DEL PEAK 19(8P23.3) WILD-TYPE | 49 | 68 | 46 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
DEL PEAK 19(8P23.3) MUTATED | 79 | 42 | 61 |
DEL PEAK 19(8P23.3) WILD-TYPE | 61 | 109 | 82 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 19(8P23.3) MUTATED | 47 | 45 | 17 | 68 | 5 |
DEL PEAK 19(8P23.3) WILD-TYPE | 59 | 29 | 73 | 60 | 31 |
P value = 0.00014 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 72 | 32 |
DEL PEAK 20(8P22) MUTATED | 8 | 34 | 21 |
DEL PEAK 20(8P22) WILD-TYPE | 34 | 38 | 11 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 20(8P22) MUTATED | 34 | 117 | 52 |
DEL PEAK 20(8P22) WILD-TYPE | 169 | 65 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 92 | 71 |
DEL PEAK 20(8P22) MUTATED | 76 | 28 | 27 |
DEL PEAK 20(8P22) WILD-TYPE | 42 | 64 | 44 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
DEL PEAK 20(8P22) MUTATED | 86 | 45 | 65 |
DEL PEAK 20(8P22) WILD-TYPE | 54 | 106 | 78 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 20(8P22) MUTATED | 51 | 50 | 21 | 70 | 4 |
DEL PEAK 20(8P22) WILD-TYPE | 55 | 24 | 69 | 58 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 23(10P15.3) MUTATED | 16 | 48 | 16 |
DEL PEAK 23(10P15.3) WILD-TYPE | 187 | 134 | 49 |
P value = 8e-05 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 23(10P15.3) MUTATED | 18 | 26 | 6 | 23 | 3 |
DEL PEAK 23(10P15.3) WILD-TYPE | 88 | 48 | 84 | 105 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 24(10Q21.1) MUTATED | 17 | 63 | 18 |
DEL PEAK 24(10Q21.1) WILD-TYPE | 186 | 119 | 47 |
P value = 1e-04 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 24(10Q21.1) MUTATED | 24 | 25 | 9 | 32 | 1 |
DEL PEAK 24(10Q21.1) WILD-TYPE | 82 | 49 | 81 | 96 | 35 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 25(10Q23.31) MUTATED | 23 | 66 | 20 |
DEL PEAK 25(10Q23.31) WILD-TYPE | 180 | 116 | 45 |
P value = 9e-05 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 25(10Q23.31) MUTATED | 31 | 26 | 12 | 34 | 1 |
DEL PEAK 25(10Q23.31) WILD-TYPE | 75 | 48 | 78 | 94 | 35 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 26(10Q25.2) MUTATED | 22 | 70 | 17 |
DEL PEAK 26(10Q25.2) WILD-TYPE | 181 | 112 | 48 |
P value = 9e-05 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 92 | 71 |
DEL PEAK 26(10Q25.2) MUTATED | 45 | 12 | 14 |
DEL PEAK 26(10Q25.2) WILD-TYPE | 73 | 80 | 57 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
DEL PEAK 26(10Q25.2) MUTATED | 51 | 18 | 35 |
DEL PEAK 26(10Q25.2) WILD-TYPE | 89 | 133 | 108 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 26(10Q25.2) MUTATED | 29 | 28 | 7 | 39 | 1 |
DEL PEAK 26(10Q25.2) WILD-TYPE | 77 | 46 | 83 | 89 | 35 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 27(12P13.2) MUTATED | 5 | 45 | 10 |
DEL PEAK 27(12P13.2) WILD-TYPE | 198 | 137 | 55 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
DEL PEAK 27(12P13.2) MUTATED | 34 | 8 | 16 |
DEL PEAK 27(12P13.2) WILD-TYPE | 106 | 143 | 127 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 27(12P13.2) MUTATED | 20 | 15 | 2 | 21 | 0 |
DEL PEAK 27(12P13.2) WILD-TYPE | 86 | 59 | 88 | 107 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
DEL PEAK 28(14Q31.1) MUTATED | 6 | 36 | 3 | 10 |
DEL PEAK 28(14Q31.1) WILD-TYPE | 29 | 25 | 26 | 11 |
P value = 8e-05 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 72 | 32 |
DEL PEAK 28(14Q31.1) MUTATED | 6 | 29 | 20 |
DEL PEAK 28(14Q31.1) WILD-TYPE | 36 | 43 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 28(14Q31.1) MUTATED | 24 | 114 | 12 |
DEL PEAK 28(14Q31.1) WILD-TYPE | 179 | 68 | 53 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 92 | 71 |
DEL PEAK 28(14Q31.1) MUTATED | 54 | 16 | 17 |
DEL PEAK 28(14Q31.1) WILD-TYPE | 64 | 76 | 54 |
P value = 0.00038 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 78 | 127 | 26 | 94 |
DEL PEAK 28(14Q31.1) MUTATED | 28 | 53 | 9 | 15 |
DEL PEAK 28(14Q31.1) WILD-TYPE | 50 | 74 | 17 | 79 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
DEL PEAK 28(14Q31.1) MUTATED | 65 | 24 | 55 |
DEL PEAK 28(14Q31.1) WILD-TYPE | 75 | 127 | 88 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 28(14Q31.1) MUTATED | 42 | 31 | 9 | 60 | 2 |
DEL PEAK 28(14Q31.1) WILD-TYPE | 64 | 43 | 81 | 68 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 29(15Q11.2) MUTATED | 33 | 125 | 19 |
DEL PEAK 29(15Q11.2) WILD-TYPE | 170 | 57 | 46 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
DEL PEAK 29(15Q11.2) MUTATED | 81 | 33 | 56 |
DEL PEAK 29(15Q11.2) WILD-TYPE | 59 | 118 | 87 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 29(15Q11.2) MUTATED | 50 | 42 | 9 | 65 | 4 |
DEL PEAK 29(15Q11.2) WILD-TYPE | 56 | 32 | 81 | 63 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 30(15Q15.2) MUTATED | 34 | 120 | 18 |
DEL PEAK 30(15Q15.2) WILD-TYPE | 169 | 62 | 47 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
DEL PEAK 30(15Q15.2) MUTATED | 79 | 30 | 56 |
DEL PEAK 30(15Q15.2) WILD-TYPE | 61 | 121 | 87 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 30(15Q15.2) MUTATED | 49 | 38 | 10 | 65 | 3 |
DEL PEAK 30(15Q15.2) WILD-TYPE | 57 | 36 | 80 | 63 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 31(15Q21.1) MUTATED | 34 | 117 | 18 |
DEL PEAK 31(15Q21.1) WILD-TYPE | 169 | 65 | 47 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
DEL PEAK 31(15Q21.1) MUTATED | 76 | 30 | 56 |
DEL PEAK 31(15Q21.1) WILD-TYPE | 64 | 121 | 87 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 31(15Q21.1) MUTATED | 47 | 37 | 9 | 63 | 6 |
DEL PEAK 31(15Q21.1) WILD-TYPE | 59 | 37 | 81 | 65 | 30 |
P value = 0.00032 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
DEL PEAK 32(15Q22.33) MUTATED | 8 | 31 | 3 | 10 |
DEL PEAK 32(15Q22.33) WILD-TYPE | 27 | 30 | 26 | 11 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 32(15Q22.33) MUTATED | 28 | 117 | 16 |
DEL PEAK 32(15Q22.33) WILD-TYPE | 175 | 65 | 49 |
P value = 0.00024 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 92 | 71 |
DEL PEAK 32(15Q22.33) MUTATED | 58 | 20 | 24 |
DEL PEAK 32(15Q22.33) WILD-TYPE | 60 | 72 | 47 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
DEL PEAK 32(15Q22.33) MUTATED | 77 | 29 | 48 |
DEL PEAK 32(15Q22.33) WILD-TYPE | 63 | 122 | 95 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 32(15Q22.33) MUTATED | 45 | 39 | 9 | 59 | 2 |
DEL PEAK 32(15Q22.33) WILD-TYPE | 61 | 35 | 81 | 69 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
DEL PEAK 35(17P12) MUTATED | 10 | 49 | 8 | 15 |
DEL PEAK 35(17P12) WILD-TYPE | 25 | 12 | 21 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 72 | 32 |
DEL PEAK 35(17P12) MUTATED | 9 | 47 | 26 |
DEL PEAK 35(17P12) WILD-TYPE | 33 | 25 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 35(17P12) MUTATED | 51 | 158 | 45 |
DEL PEAK 35(17P12) WILD-TYPE | 152 | 24 | 20 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 92 | 71 |
DEL PEAK 35(17P12) MUTATED | 95 | 31 | 34 |
DEL PEAK 35(17P12) WILD-TYPE | 23 | 61 | 37 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
DEL PEAK 35(17P12) MUTATED | 110 | 52 | 83 |
DEL PEAK 35(17P12) WILD-TYPE | 30 | 99 | 60 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 35(17P12) MUTATED | 80 | 51 | 19 | 91 | 4 |
DEL PEAK 35(17P12) WILD-TYPE | 26 | 23 | 71 | 37 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
DEL PEAK 37(18P11.31) MUTATED | 6 | 50 | 7 | 15 |
DEL PEAK 37(18P11.31) WILD-TYPE | 29 | 11 | 22 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 72 | 32 |
DEL PEAK 37(18P11.31) MUTATED | 5 | 47 | 26 |
DEL PEAK 37(18P11.31) WILD-TYPE | 37 | 25 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 37(18P11.31) MUTATED | 43 | 163 | 40 |
DEL PEAK 37(18P11.31) WILD-TYPE | 160 | 19 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 92 | 71 |
DEL PEAK 37(18P11.31) MUTATED | 98 | 23 | 35 |
DEL PEAK 37(18P11.31) WILD-TYPE | 20 | 69 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
DEL PEAK 37(18P11.31) MUTATED | 121 | 38 | 77 |
DEL PEAK 37(18P11.31) WILD-TYPE | 19 | 113 | 66 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 37(18P11.31) MUTATED | 77 | 57 | 11 | 90 | 1 |
DEL PEAK 37(18P11.31) WILD-TYPE | 29 | 17 | 79 | 38 | 35 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
DEL PEAK 38(18Q12.2) MUTATED | 8 | 53 | 9 | 16 |
DEL PEAK 38(18Q12.2) WILD-TYPE | 27 | 8 | 20 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 72 | 32 |
DEL PEAK 38(18Q12.2) MUTATED | 7 | 51 | 28 |
DEL PEAK 38(18Q12.2) WILD-TYPE | 35 | 21 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 38(18Q12.2) MUTATED | 52 | 170 | 52 |
DEL PEAK 38(18Q12.2) WILD-TYPE | 151 | 12 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 92 | 71 |
DEL PEAK 38(18Q12.2) MUTATED | 106 | 31 | 36 |
DEL PEAK 38(18Q12.2) WILD-TYPE | 12 | 61 | 35 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
DEL PEAK 38(18Q12.2) MUTATED | 126 | 51 | 86 |
DEL PEAK 38(18Q12.2) WILD-TYPE | 14 | 100 | 57 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 38(18Q12.2) MUTATED | 83 | 62 | 18 | 98 | 2 |
DEL PEAK 38(18Q12.2) WILD-TYPE | 23 | 12 | 72 | 30 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 35 | 61 | 29 | 21 |
DEL PEAK 39(18Q21.2) MUTATED | 8 | 53 | 10 | 16 |
DEL PEAK 39(18Q21.2) WILD-TYPE | 27 | 8 | 19 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 72 | 32 |
DEL PEAK 39(18Q21.2) MUTATED | 7 | 52 | 28 |
DEL PEAK 39(18Q21.2) WILD-TYPE | 35 | 20 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 39(18Q21.2) MUTATED | 60 | 172 | 55 |
DEL PEAK 39(18Q21.2) WILD-TYPE | 143 | 10 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 118 | 92 | 71 |
DEL PEAK 39(18Q21.2) MUTATED | 107 | 41 | 38 |
DEL PEAK 39(18Q21.2) WILD-TYPE | 11 | 51 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
DEL PEAK 39(18Q21.2) MUTATED | 128 | 62 | 87 |
DEL PEAK 39(18Q21.2) WILD-TYPE | 12 | 89 | 56 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 39(18Q21.2) MUTATED | 86 | 64 | 26 | 98 | 3 |
DEL PEAK 39(18Q21.2) WILD-TYPE | 20 | 10 | 64 | 30 | 33 |
P value = 4e-05 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 40(19P13.3) MUTATED | 13 | 38 | 12 |
DEL PEAK 40(19P13.3) WILD-TYPE | 190 | 144 | 53 |
P value = 0.00021 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 40(19P13.3) MUTATED | 20 | 10 | 5 | 28 | 0 |
DEL PEAK 40(19P13.3) WILD-TYPE | 86 | 64 | 85 | 100 | 36 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 41(20P12.1) MUTATED | 18 | 49 | 19 |
DEL PEAK 41(20P12.1) WILD-TYPE | 185 | 133 | 46 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
DEL PEAK 41(20P12.1) MUTATED | 49 | 14 | 21 |
DEL PEAK 41(20P12.1) WILD-TYPE | 91 | 137 | 122 |
P value = 2e-05 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 41(20P12.1) MUTATED | 30 | 22 | 5 | 23 | 4 |
DEL PEAK 41(20P12.1) WILD-TYPE | 76 | 52 | 85 | 105 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 42(21Q11.2) MUTATED | 39 | 89 | 13 |
DEL PEAK 42(21Q11.2) WILD-TYPE | 164 | 93 | 52 |
P value = 1e-04 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 42(21Q11.2) MUTATED | 33 | 34 | 17 | 48 | 4 |
DEL PEAK 42(21Q11.2) WILD-TYPE | 73 | 40 | 73 | 80 | 32 |
P value = 0.00024 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 72 | 32 |
DEL PEAK 43(22Q13.32) MUTATED | 6 | 35 | 16 |
DEL PEAK 43(22Q13.32) WILD-TYPE | 36 | 37 | 16 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 203 | 182 | 65 |
DEL PEAK 43(22Q13.32) MUTATED | 37 | 105 | 18 |
DEL PEAK 43(22Q13.32) WILD-TYPE | 166 | 77 | 47 |
P value = 0.00021 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 140 | 151 | 143 |
DEL PEAK 43(22Q13.32) MUTATED | 66 | 36 | 52 |
DEL PEAK 43(22Q13.32) WILD-TYPE | 74 | 115 | 91 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 106 | 74 | 90 | 128 | 36 |
DEL PEAK 43(22Q13.32) MUTATED | 42 | 35 | 13 | 60 | 4 |
DEL PEAK 43(22Q13.32) WILD-TYPE | 64 | 39 | 77 | 68 | 32 |
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Copy number data file = transformed.cor.cli.txt
-
Molecular subtype file = COAD-TP.transferedmergedcluster.txt
-
Number of patients = 450
-
Number of significantly focal cnvs = 68
-
Number of molecular subtypes = 12
-
Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.