This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 30 focal events and 12 molecular subtypes across 528 patients, 126 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_1q24.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
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amp_1q32.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_3q26.32 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_5q35.1 cnv correlated to 'CN_CNMF'.
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amp_7q36.3 cnv correlated to 'CN_CNMF', 'RPPA_CNMF', and 'MRNASEQ_CNMF'.
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amp_8q24.22 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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amp_10p14 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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amp_xp11.4 cnv correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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del_1p36.23 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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del_1p31.1 cnv correlated to 'CN_CNMF', 'RPPA_CNMF', and 'MIRSEQ_CNMF'.
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del_1q43 cnv correlated to 'CN_CNMF'.
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del_2q37.3 cnv correlated to 'MRNA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.
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del_3p26.3 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_3p22.2 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_3p14.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_3p12.2 cnv correlated to 'CN_CNMF'.
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del_3q11.2 cnv correlated to 'CN_CNMF'.
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del_4q34.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_6q26 cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_6q26 cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_8p23.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_9p23 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_9p21.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_10q23.31 cnv correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
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del_13q14.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_14q31.1 cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
del 14q31 1 | 228 (43%) | 300 |
7e-05 (0.0183) |
0.00041 (0.1) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
4e-05 (0.0107) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
0.0906 (1.00) |
0.952 (1.00) |
amp 8q24 22 | 79 (15%) | 449 |
0.225 (1.00) |
0.105 (1.00) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
3e-05 (0.0081) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
0.0245 (1.00) |
del 3p26 3 | 455 (86%) | 73 |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
3e-05 (0.0081) |
0.032 (1.00) |
1e-05 (0.0036) |
1e-05 (0.0036) |
8e-05 (0.0207) |
2e-05 (0.00562) |
0.00238 (0.521) |
0.0101 (1.00) |
del 3p22 2 | 465 (88%) | 63 |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
0.0698 (1.00) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
0.0064 (1.00) |
0.0303 (1.00) |
del 1p36 23 | 103 (20%) | 425 |
0.00016 (0.0405) |
0.00097 (0.229) |
1e-05 (0.0036) |
0.0811 (1.00) |
2e-05 (0.00562) |
3e-05 (0.0081) |
0.00017 (0.0427) |
0.0001 (0.0256) |
1e-05 (0.0036) |
0.0041 (0.849) |
0.021 (1.00) |
0.313 (1.00) |
del 9p23 | 152 (29%) | 376 |
0.00397 (0.826) |
0.0357 (1.00) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
2e-05 (0.00562) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
0.00275 (0.597) |
0.124 (1.00) |
del 9p21 3 | 159 (30%) | 369 |
0.00129 (0.298) |
0.0166 (1.00) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
0.00127 (0.295) |
0.0121 (1.00) |
del 13q14 2 | 82 (16%) | 446 |
0.0142 (1.00) |
0.0838 (1.00) |
1e-05 (0.0036) |
8e-05 (0.0207) |
1e-05 (0.0036) |
9e-05 (0.0231) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
0.0971 (1.00) |
0.149 (1.00) |
amp 3q26 32 | 87 (16%) | 441 |
0.0566 (1.00) |
0.12 (1.00) |
1e-05 (0.0036) |
4e-05 (0.0107) |
0.00264 (0.576) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
1e-05 (0.0036) |
0.00095 (0.225) |
0.00541 (1.00) |
0.128 (1.00) |
del 6q26 | 151 (29%) | 377 |
0.0152 (1.00) |
0.0986 (1.00) |
1e-05 (0.0036) |
0.0131 (1.00) |
4e-05 (0.0107) |
1e-05 (0.0036) |
0.00106 (0.249) |
0.00012 (0.0306) |
2e-05 (0.00562) |
0.00018 (0.0448) |
0.03 (1.00) |
0.133 (1.00) |
del 6q26 | 151 (29%) | 377 |
0.0149 (1.00) |
0.0983 (1.00) |
1e-05 (0.0036) |
0.0126 (1.00) |
2e-05 (0.00562) |
1e-05 (0.0036) |
0.00054 (0.131) |
0.00012 (0.0306) |
1e-05 (0.0036) |
0.00017 (0.0427) |
0.0293 (1.00) |
0.133 (1.00) |
amp 1q32 1 | 62 (12%) | 466 |
0.407 (1.00) |
0.9 (1.00) |
1e-05 (0.0036) |
0.0395 (1.00) |
0.0675 (1.00) |
0.0502 (1.00) |
1e-05 (0.0036) |
0.00492 (1.00) |
1e-05 (0.0036) |
0.00071 (0.17) |
0.277 (1.00) |
0.748 (1.00) |
del 4q34 3 | 78 (15%) | 450 |
0.239 (1.00) |
0.493 (1.00) |
1e-05 (0.0036) |
2e-05 (0.00562) |
0.0402 (1.00) |
0.00582 (1.00) |
0.00016 (0.0405) |
1e-05 (0.0036) |
0.15 (1.00) |
0.00861 (1.00) |
0.18 (1.00) |
0.0159 (1.00) |
del 8p23 2 | 154 (29%) | 374 |
0.503 (1.00) |
0.246 (1.00) |
1e-05 (0.0036) |
0.0413 (1.00) |
0.00632 (1.00) |
0.0111 (1.00) |
0.00185 (0.414) |
1e-05 (0.0036) |
0.0008 (0.191) |
0.00088 (0.209) |
0.139 (1.00) |
0.338 (1.00) |
amp 1q24 1 | 62 (12%) | 466 |
0.258 (1.00) |
0.785 (1.00) |
1e-05 (0.0036) |
0.147 (1.00) |
0.165 (1.00) |
0.135 (1.00) |
2e-05 (0.00562) |
0.00489 (1.00) |
2e-05 (0.00562) |
0.00725 (1.00) |
0.584 (1.00) |
0.926 (1.00) |
amp 7q36 3 | 176 (33%) | 352 |
0.453 (1.00) |
0.86 (1.00) |
1e-05 (0.0036) |
0.00588 (1.00) |
0.00054 (0.131) |
0.00334 (0.715) |
4e-05 (0.0107) |
0.00362 (0.767) |
0.00682 (1.00) |
0.0147 (1.00) |
0.147 (1.00) |
0.787 (1.00) |
del 1p31 1 | 77 (15%) | 451 |
0.00155 (0.355) |
0.00659 (1.00) |
1e-05 (0.0036) |
0.0948 (1.00) |
0.00024 (0.0595) |
0.00116 (0.27) |
0.0123 (1.00) |
0.00375 (0.784) |
1e-05 (0.0036) |
0.00296 (0.636) |
0.00494 (1.00) |
0.618 (1.00) |
del 3p14 1 | 373 (71%) | 155 |
0.00347 (0.739) |
0.0104 (1.00) |
1e-05 (0.0036) |
0.00558 (1.00) |
0.0931 (1.00) |
0.0554 (1.00) |
1e-05 (0.0036) |
0.00026 (0.064) |
0.0916 (1.00) |
0.00676 (1.00) |
0.335 (1.00) |
0.882 (1.00) |
amp 10p14 | 20 (4%) | 508 |
0.189 (1.00) |
0.774 (1.00) |
2e-05 (0.00562) |
0.18 (1.00) |
0.33 (1.00) |
0.201 (1.00) |
0.00218 (0.482) |
2e-05 (0.00562) |
0.032 (1.00) |
0.036 (1.00) |
0.862 (1.00) |
0.369 (1.00) |
amp xp11 4 | 33 (6%) | 495 |
0.841 (1.00) |
0.798 (1.00) |
0.00171 (0.386) |
0.114 (1.00) |
0.0007 (0.169) |
0.00203 (0.453) |
0.0292 (1.00) |
7e-05 (0.0183) |
0.0484 (1.00) |
0.245 (1.00) |
0.791 (1.00) |
1 (1.00) |
del 2q37 3 | 50 (9%) | 478 |
0.00157 (0.358) |
0.00047 (0.115) |
0.765 (1.00) |
0.621 (1.00) |
0.239 (1.00) |
0.113 (1.00) |
2e-05 (0.00562) |
0.00218 (0.482) |
0.012 (1.00) |
0.0692 (1.00) |
0.252 (1.00) |
0.135 (1.00) |
del 10q23 31 | 96 (18%) | 432 |
0.442 (1.00) |
0.546 (1.00) |
1e-05 (0.0036) |
0.00161 (0.365) |
0.915 (1.00) |
0.00674 (1.00) |
0.0467 (1.00) |
0.00286 (0.618) |
0.0147 (1.00) |
5e-05 (0.0131) |
0.8 (1.00) |
0.438 (1.00) |
amp 5q35 1 | 332 (63%) | 196 |
0.0618 (1.00) |
0.0508 (1.00) |
0.00024 (0.0595) |
0.332 (1.00) |
0.0392 (1.00) |
0.00942 (1.00) |
0.00372 (0.781) |
0.0845 (1.00) |
0.13 (1.00) |
0.405 (1.00) |
0.621 (1.00) |
0.742 (1.00) |
del 1q43 | 42 (8%) | 486 |
0.0114 (1.00) |
0.0111 (1.00) |
4e-05 (0.0107) |
0.358 (1.00) |
0.019 (1.00) |
0.0636 (1.00) |
0.00364 (0.768) |
0.222 (1.00) |
0.0993 (1.00) |
0.0157 (1.00) |
0.292 (1.00) |
0.823 (1.00) |
del 3p12 2 | 305 (58%) | 223 |
0.0398 (1.00) |
0.0636 (1.00) |
1e-05 (0.0036) |
0.0201 (1.00) |
0.35 (1.00) |
0.559 (1.00) |
0.0013 (0.299) |
0.0232 (1.00) |
0.256 (1.00) |
0.0456 (1.00) |
0.524 (1.00) |
0.737 (1.00) |
del 3q11 2 | 161 (30%) | 367 |
0.183 (1.00) |
0.165 (1.00) |
1e-05 (0.0036) |
0.0415 (1.00) |
0.865 (1.00) |
0.471 (1.00) |
0.505 (1.00) |
0.187 (1.00) |
0.538 (1.00) |
0.0632 (1.00) |
0.749 (1.00) |
0.757 (1.00) |
amp 4q32 1 | 16 (3%) | 512 |
0.189 (1.00) |
0.775 (1.00) |
0.236 (1.00) |
0.706 (1.00) |
0.633 (1.00) |
0.219 (1.00) |
0.0131 (1.00) |
0.0194 (1.00) |
0.00175 (0.394) |
0.102 (1.00) |
0.236 (1.00) |
0.493 (1.00) |
amp xp22 2 | 31 (6%) | 497 |
1 (1.00) |
0.524 (1.00) |
0.00809 (1.00) |
0.236 (1.00) |
0.00107 (0.25) |
0.0153 (1.00) |
0.0577 (1.00) |
0.00204 (0.453) |
0.0368 (1.00) |
0.348 (1.00) |
0.942 (1.00) |
0.879 (1.00) |
amp xq11 2 | 29 (5%) | 499 |
0.172 (1.00) |
0.161 (1.00) |
0.165 (1.00) |
0.257 (1.00) |
0.167 (1.00) |
0.0278 (1.00) |
0.173 (1.00) |
0.0767 (1.00) |
0.141 (1.00) |
0.426 (1.00) |
0.393 (1.00) |
0.855 (1.00) |
amp xq28 | 37 (7%) | 491 |
0.491 (1.00) |
0.703 (1.00) |
0.163 (1.00) |
0.637 (1.00) |
0.184 (1.00) |
0.106 (1.00) |
0.0651 (1.00) |
0.0686 (1.00) |
0.108 (1.00) |
0.327 (1.00) |
0.73 (1.00) |
0.486 (1.00) |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
AMP PEAK 1(1Q24.1) MUTATED | 12 | 3 | 47 |
AMP PEAK 1(1Q24.1) WILD-TYPE | 226 | 132 | 108 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 222 | 195 |
AMP PEAK 1(1Q24.1) MUTATED | 3 | 19 | 38 |
AMP PEAK 1(1Q24.1) WILD-TYPE | 103 | 203 | 157 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
AMP PEAK 1(1Q24.1) MUTATED | 4 | 19 | 37 |
AMP PEAK 1(1Q24.1) WILD-TYPE | 120 | 185 | 145 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
AMP PEAK 2(1Q32.1) MUTATED | 9 | 3 | 50 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 229 | 132 | 105 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 222 | 195 |
AMP PEAK 2(1Q32.1) MUTATED | 2 | 19 | 39 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 104 | 203 | 156 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
AMP PEAK 2(1Q32.1) MUTATED | 4 | 18 | 38 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 120 | 186 | 144 |
P value = 0.00071 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
AMP PEAK 2(1Q32.1) MUTATED | 12 | 20 | 16 | 12 |
AMP PEAK 2(1Q32.1) WILD-TYPE | 132 | 114 | 179 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
AMP PEAK 3(3Q26.32) MUTATED | 14 | 19 | 54 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 224 | 116 | 101 |
P value = 4e-05 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
AMP PEAK 3(3Q26.32) MUTATED | 7 | 14 | 30 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 121 | 62 | 80 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 196 | 130 |
AMP PEAK 3(3Q26.32) MUTATED | 14 | 22 | 42 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 107 | 174 | 88 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 222 | 195 |
AMP PEAK 3(3Q26.32) MUTATED | 14 | 18 | 55 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 92 | 204 | 140 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 237 | 125 |
AMP PEAK 3(3Q26.32) MUTATED | 24 | 21 | 42 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 137 | 216 | 83 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
AMP PEAK 3(3Q26.32) MUTATED | 13 | 16 | 55 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 111 | 188 | 127 |
P value = 0.00095 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
AMP PEAK 3(3Q26.32) MUTATED | 29 | 32 | 17 | 6 |
AMP PEAK 3(3Q26.32) WILD-TYPE | 115 | 102 | 178 | 31 |
P value = 0.00024 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
AMP PEAK 5(5Q35.1) MUTATED | 162 | 65 | 105 |
AMP PEAK 5(5Q35.1) WILD-TYPE | 76 | 70 | 50 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
AMP PEAK 6(7Q36.3) MUTATED | 39 | 48 | 89 |
AMP PEAK 6(7Q36.3) WILD-TYPE | 199 | 87 | 66 |
P value = 0.00054 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 62 | 75 | 80 | 79 | 43 |
AMP PEAK 6(7Q36.3) MUTATED | 23 | 30 | 31 | 35 | 23 | 10 |
AMP PEAK 6(7Q36.3) WILD-TYPE | 85 | 32 | 44 | 45 | 56 | 33 |
P value = 4e-05 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 222 | 195 |
AMP PEAK 6(7Q36.3) MUTATED | 33 | 53 | 88 |
AMP PEAK 6(7Q36.3) WILD-TYPE | 73 | 169 | 107 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
AMP PEAK 7(8Q24.22) MUTATED | 6 | 17 | 56 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 232 | 118 | 99 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
AMP PEAK 7(8Q24.22) MUTATED | 6 | 14 | 33 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 122 | 62 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 62 | 75 | 80 | 79 | 43 |
AMP PEAK 7(8Q24.22) MUTATED | 5 | 24 | 15 | 15 | 10 | 2 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 103 | 38 | 60 | 65 | 69 | 41 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 196 | 130 |
AMP PEAK 7(8Q24.22) MUTATED | 15 | 18 | 38 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 106 | 178 | 92 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 222 | 195 |
AMP PEAK 7(8Q24.22) MUTATED | 8 | 9 | 61 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 98 | 213 | 134 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 237 | 125 |
AMP PEAK 7(8Q24.22) MUTATED | 12 | 15 | 51 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 149 | 222 | 74 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
AMP PEAK 7(8Q24.22) MUTATED | 13 | 11 | 53 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 111 | 193 | 129 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
AMP PEAK 7(8Q24.22) MUTATED | 29 | 24 | 11 | 13 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 115 | 110 | 184 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 38 | 21 | 48 | 35 |
AMP PEAK 7(8Q24.22) MUTATED | 3 | 1 | 1 | 14 |
AMP PEAK 7(8Q24.22) WILD-TYPE | 35 | 20 | 47 | 21 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
AMP PEAK 8(10P14) MUTATED | 1 | 5 | 14 |
AMP PEAK 8(10P14) WILD-TYPE | 237 | 130 | 141 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 237 | 125 |
AMP PEAK 8(10P14) MUTATED | 5 | 2 | 13 |
AMP PEAK 8(10P14) WILD-TYPE | 156 | 235 | 112 |
P value = 7e-04 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 62 | 75 | 80 | 79 | 43 |
AMP PEAK 10(XP11.4) MUTATED | 0 | 5 | 5 | 10 | 5 | 0 |
AMP PEAK 10(XP11.4) WILD-TYPE | 108 | 57 | 70 | 70 | 74 | 43 |
P value = 7e-05 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 237 | 125 |
AMP PEAK 10(XP11.4) MUTATED | 6 | 8 | 19 |
AMP PEAK 10(XP11.4) WILD-TYPE | 155 | 229 | 106 |
P value = 0.00016 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 24 | 13 |
DEL PEAK 1(1P36.23) MUTATED | 2 | 8 | 8 |
DEL PEAK 1(1P36.23) WILD-TYPE | 31 | 16 | 5 |
P value = 0.00097 (Fisher's exact test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 1(1P36.23) MUTATED | 0 | 2 | 2 | 5 | 1 | 1 | 7 |
DEL PEAK 1(1P36.23) WILD-TYPE | 11 | 10 | 2 | 6 | 12 | 8 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 1(1P36.23) MUTATED | 13 | 37 | 53 |
DEL PEAK 1(1P36.23) WILD-TYPE | 225 | 98 | 102 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 62 | 75 | 80 | 79 | 43 |
DEL PEAK 1(1P36.23) MUTATED | 10 | 20 | 20 | 26 | 7 | 6 |
DEL PEAK 1(1P36.23) WILD-TYPE | 98 | 42 | 55 | 54 | 72 | 37 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 196 | 130 |
DEL PEAK 1(1P36.23) MUTATED | 26 | 22 | 41 |
DEL PEAK 1(1P36.23) WILD-TYPE | 95 | 174 | 89 |
P value = 0.00017 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 222 | 195 |
DEL PEAK 1(1P36.23) MUTATED | 20 | 27 | 56 |
DEL PEAK 1(1P36.23) WILD-TYPE | 86 | 195 | 139 |
P value = 1e-04 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 237 | 125 |
DEL PEAK 1(1P36.23) MUTATED | 38 | 28 | 37 |
DEL PEAK 1(1P36.23) WILD-TYPE | 123 | 209 | 88 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 1(1P36.23) MUTATED | 19 | 23 | 61 |
DEL PEAK 1(1P36.23) WILD-TYPE | 105 | 181 | 121 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 2(1P31.1) MUTATED | 8 | 29 | 40 |
DEL PEAK 2(1P31.1) WILD-TYPE | 230 | 106 | 115 |
P value = 0.00024 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 62 | 75 | 80 | 79 | 43 |
DEL PEAK 2(1P31.1) MUTATED | 9 | 16 | 12 | 21 | 4 | 5 |
DEL PEAK 2(1P31.1) WILD-TYPE | 99 | 46 | 63 | 59 | 75 | 38 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 2(1P31.1) MUTATED | 10 | 20 | 47 |
DEL PEAK 2(1P31.1) WILD-TYPE | 114 | 184 | 135 |
P value = 4e-05 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 3(1Q43) MUTATED | 7 | 22 | 13 |
DEL PEAK 3(1Q43) WILD-TYPE | 231 | 113 | 142 |
P value = 0.00047 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 4(2Q37.3) MUTATED | 0 | 4 | 0 | 0 | 1 | 0 | 6 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 11 | 8 | 4 | 11 | 12 | 9 | 4 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 222 | 195 |
DEL PEAK 4(2Q37.3) MUTATED | 21 | 8 | 20 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 85 | 214 | 175 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 24 | 13 |
DEL PEAK 5(3P26.3) MUTATED | 32 | 22 | 3 |
DEL PEAK 5(3P26.3) WILD-TYPE | 1 | 2 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 5(3P26.3) MUTATED | 11 | 11 | 1 | 11 | 12 | 9 | 2 |
DEL PEAK 5(3P26.3) WILD-TYPE | 0 | 1 | 3 | 0 | 1 | 0 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 5(3P26.3) MUTATED | 236 | 69 | 150 |
DEL PEAK 5(3P26.3) WILD-TYPE | 2 | 66 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
DEL PEAK 5(3P26.3) MUTATED | 118 | 50 | 103 |
DEL PEAK 5(3P26.3) WILD-TYPE | 10 | 26 | 7 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 62 | 75 | 80 | 79 | 43 |
DEL PEAK 5(3P26.3) MUTATED | 106 | 54 | 67 | 60 | 64 | 39 |
DEL PEAK 5(3P26.3) WILD-TYPE | 2 | 8 | 8 | 20 | 15 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 222 | 195 |
DEL PEAK 5(3P26.3) MUTATED | 67 | 212 | 172 |
DEL PEAK 5(3P26.3) WILD-TYPE | 39 | 10 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 237 | 125 |
DEL PEAK 5(3P26.3) MUTATED | 115 | 228 | 108 |
DEL PEAK 5(3P26.3) WILD-TYPE | 46 | 9 | 17 |
P value = 8e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 5(3P26.3) MUTATED | 103 | 191 | 144 |
DEL PEAK 5(3P26.3) WILD-TYPE | 21 | 13 | 38 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 5(3P26.3) MUTATED | 112 | 108 | 184 | 34 |
DEL PEAK 5(3P26.3) WILD-TYPE | 32 | 26 | 11 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 24 | 13 |
DEL PEAK 6(3P22.2) MUTATED | 32 | 22 | 3 |
DEL PEAK 6(3P22.2) WILD-TYPE | 1 | 2 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 6(3P22.2) MUTATED | 11 | 11 | 1 | 11 | 12 | 9 | 2 |
DEL PEAK 6(3P22.2) WILD-TYPE | 0 | 1 | 3 | 0 | 1 | 0 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 6(3P22.2) MUTATED | 238 | 75 | 152 |
DEL PEAK 6(3P22.2) WILD-TYPE | 0 | 60 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
DEL PEAK 6(3P22.2) MUTATED | 119 | 52 | 106 |
DEL PEAK 6(3P22.2) WILD-TYPE | 9 | 24 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 62 | 75 | 80 | 79 | 43 |
DEL PEAK 6(3P22.2) MUTATED | 107 | 59 | 66 | 63 | 65 | 40 |
DEL PEAK 6(3P22.2) WILD-TYPE | 1 | 3 | 9 | 17 | 14 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 222 | 195 |
DEL PEAK 6(3P22.2) MUTATED | 67 | 217 | 177 |
DEL PEAK 6(3P22.2) WILD-TYPE | 39 | 5 | 18 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 237 | 125 |
DEL PEAK 6(3P22.2) MUTATED | 117 | 234 | 110 |
DEL PEAK 6(3P22.2) WILD-TYPE | 44 | 3 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 6(3P22.2) MUTATED | 103 | 197 | 148 |
DEL PEAK 6(3P22.2) WILD-TYPE | 21 | 7 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 6(3P22.2) MUTATED | 114 | 111 | 187 | 36 |
DEL PEAK 6(3P22.2) WILD-TYPE | 30 | 23 | 8 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 7(3P14.1) MUTATED | 199 | 32 | 142 |
DEL PEAK 7(3P14.1) WILD-TYPE | 39 | 103 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 222 | 195 |
DEL PEAK 7(3P14.1) MUTATED | 47 | 175 | 148 |
DEL PEAK 7(3P14.1) WILD-TYPE | 59 | 47 | 47 |
P value = 0.00026 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 237 | 125 |
DEL PEAK 7(3P14.1) MUTATED | 94 | 182 | 94 |
DEL PEAK 7(3P14.1) WILD-TYPE | 67 | 55 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 8(3P12.2) MUTATED | 160 | 22 | 123 |
DEL PEAK 8(3P12.2) WILD-TYPE | 78 | 113 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 9(3Q11.2) MUTATED | 83 | 13 | 65 |
DEL PEAK 9(3Q11.2) WILD-TYPE | 155 | 122 | 90 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 10(4Q34.3) MUTATED | 10 | 17 | 51 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 228 | 118 | 104 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
DEL PEAK 10(4Q34.3) MUTATED | 10 | 9 | 34 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 118 | 67 | 76 |
P value = 0.00016 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 222 | 195 |
DEL PEAK 10(4Q34.3) MUTATED | 7 | 26 | 45 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 99 | 196 | 150 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 237 | 125 |
DEL PEAK 10(4Q34.3) MUTATED | 11 | 30 | 37 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 150 | 207 | 88 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 11(6Q26) MUTATED | 37 | 26 | 88 |
DEL PEAK 11(6Q26) WILD-TYPE | 201 | 109 | 67 |
P value = 4e-05 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 62 | 75 | 80 | 79 | 43 |
DEL PEAK 11(6Q26) MUTATED | 35 | 30 | 25 | 23 | 9 | 8 |
DEL PEAK 11(6Q26) WILD-TYPE | 73 | 32 | 50 | 57 | 70 | 35 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 196 | 130 |
DEL PEAK 11(6Q26) MUTATED | 39 | 36 | 55 |
DEL PEAK 11(6Q26) WILD-TYPE | 82 | 160 | 75 |
P value = 0.00106 (Fisher's exact test), Q value = 0.25
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 222 | 195 |
DEL PEAK 11(6Q26) MUTATED | 21 | 54 | 73 |
DEL PEAK 11(6Q26) WILD-TYPE | 85 | 168 | 122 |
P value = 0.00012 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 237 | 125 |
DEL PEAK 11(6Q26) MUTATED | 41 | 53 | 54 |
DEL PEAK 11(6Q26) WILD-TYPE | 120 | 184 | 71 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 11(6Q26) MUTATED | 25 | 43 | 79 |
DEL PEAK 11(6Q26) WILD-TYPE | 99 | 161 | 103 |
P value = 0.00018 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 11(6Q26) MUTATED | 38 | 50 | 40 | 19 |
DEL PEAK 11(6Q26) WILD-TYPE | 106 | 84 | 155 | 18 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 12(6Q26) MUTATED | 37 | 26 | 88 |
DEL PEAK 12(6Q26) WILD-TYPE | 201 | 109 | 67 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 62 | 75 | 80 | 79 | 43 |
DEL PEAK 12(6Q26) MUTATED | 34 | 31 | 25 | 23 | 9 | 8 |
DEL PEAK 12(6Q26) WILD-TYPE | 74 | 31 | 50 | 57 | 70 | 35 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 196 | 130 |
DEL PEAK 12(6Q26) MUTATED | 39 | 36 | 55 |
DEL PEAK 12(6Q26) WILD-TYPE | 82 | 160 | 75 |
P value = 0.00054 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 222 | 195 |
DEL PEAK 12(6Q26) MUTATED | 20 | 54 | 74 |
DEL PEAK 12(6Q26) WILD-TYPE | 86 | 168 | 121 |
P value = 0.00012 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 237 | 125 |
DEL PEAK 12(6Q26) MUTATED | 40 | 53 | 55 |
DEL PEAK 12(6Q26) WILD-TYPE | 121 | 184 | 70 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 12(6Q26) MUTATED | 24 | 43 | 80 |
DEL PEAK 12(6Q26) WILD-TYPE | 100 | 161 | 102 |
P value = 0.00017 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 12(6Q26) MUTATED | 38 | 50 | 40 | 19 |
DEL PEAK 12(6Q26) WILD-TYPE | 106 | 84 | 155 | 18 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 13(8P23.2) MUTATED | 43 | 37 | 74 |
DEL PEAK 13(8P23.2) WILD-TYPE | 195 | 98 | 81 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 237 | 125 |
DEL PEAK 13(8P23.2) MUTATED | 39 | 56 | 57 |
DEL PEAK 13(8P23.2) WILD-TYPE | 122 | 181 | 68 |
P value = 8e-04 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 13(8P23.2) MUTATED | 36 | 44 | 71 |
DEL PEAK 13(8P23.2) WILD-TYPE | 88 | 160 | 111 |
P value = 0.00088 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 13(8P23.2) MUTATED | 51 | 39 | 42 | 19 |
DEL PEAK 13(8P23.2) WILD-TYPE | 93 | 95 | 153 | 18 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 14(9P23) MUTATED | 9 | 34 | 109 |
DEL PEAK 14(9P23) WILD-TYPE | 229 | 101 | 46 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
DEL PEAK 14(9P23) MUTATED | 6 | 21 | 68 |
DEL PEAK 14(9P23) WILD-TYPE | 122 | 55 | 42 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 62 | 75 | 80 | 79 | 43 |
DEL PEAK 14(9P23) MUTATED | 17 | 38 | 31 | 21 | 19 | 10 |
DEL PEAK 14(9P23) WILD-TYPE | 91 | 24 | 44 | 59 | 60 | 33 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 196 | 130 |
DEL PEAK 14(9P23) MUTATED | 34 | 42 | 60 |
DEL PEAK 14(9P23) WILD-TYPE | 87 | 154 | 70 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 222 | 195 |
DEL PEAK 14(9P23) MUTATED | 14 | 25 | 111 |
DEL PEAK 14(9P23) WILD-TYPE | 92 | 197 | 84 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 237 | 125 |
DEL PEAK 14(9P23) MUTATED | 37 | 35 | 78 |
DEL PEAK 14(9P23) WILD-TYPE | 124 | 202 | 47 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 14(9P23) MUTATED | 26 | 25 | 96 |
DEL PEAK 14(9P23) WILD-TYPE | 98 | 179 | 86 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 14(9P23) MUTATED | 44 | 56 | 23 | 24 |
DEL PEAK 14(9P23) WILD-TYPE | 100 | 78 | 172 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 15(9P21.3) MUTATED | 12 | 35 | 112 |
DEL PEAK 15(9P21.3) WILD-TYPE | 226 | 100 | 43 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
DEL PEAK 15(9P21.3) MUTATED | 6 | 24 | 68 |
DEL PEAK 15(9P21.3) WILD-TYPE | 122 | 52 | 42 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 62 | 75 | 80 | 79 | 43 |
DEL PEAK 15(9P21.3) MUTATED | 18 | 40 | 31 | 22 | 22 | 10 |
DEL PEAK 15(9P21.3) WILD-TYPE | 90 | 22 | 44 | 58 | 57 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 196 | 130 |
DEL PEAK 15(9P21.3) MUTATED | 34 | 45 | 64 |
DEL PEAK 15(9P21.3) WILD-TYPE | 87 | 151 | 66 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 222 | 195 |
DEL PEAK 15(9P21.3) MUTATED | 16 | 27 | 114 |
DEL PEAK 15(9P21.3) WILD-TYPE | 90 | 195 | 81 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 237 | 125 |
DEL PEAK 15(9P21.3) MUTATED | 38 | 35 | 84 |
DEL PEAK 15(9P21.3) WILD-TYPE | 123 | 202 | 41 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 15(9P21.3) MUTATED | 29 | 26 | 98 |
DEL PEAK 15(9P21.3) WILD-TYPE | 95 | 178 | 84 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 15(9P21.3) MUTATED | 48 | 55 | 24 | 26 |
DEL PEAK 15(9P21.3) WILD-TYPE | 96 | 79 | 171 | 11 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 16(10Q23.31) MUTATED | 17 | 29 | 50 |
DEL PEAK 16(10Q23.31) WILD-TYPE | 221 | 106 | 105 |
P value = 5e-05 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 16(10Q23.31) MUTATED | 21 | 35 | 23 | 15 |
DEL PEAK 16(10Q23.31) WILD-TYPE | 123 | 99 | 172 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 17(13Q14.2) MUTATED | 11 | 23 | 48 |
DEL PEAK 17(13Q14.2) WILD-TYPE | 227 | 112 | 107 |
P value = 8e-05 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
DEL PEAK 17(13Q14.2) MUTATED | 8 | 16 | 27 |
DEL PEAK 17(13Q14.2) WILD-TYPE | 120 | 60 | 83 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 62 | 75 | 80 | 79 | 43 |
DEL PEAK 17(13Q14.2) MUTATED | 3 | 22 | 15 | 14 | 11 | 7 |
DEL PEAK 17(13Q14.2) WILD-TYPE | 105 | 40 | 60 | 66 | 68 | 36 |
P value = 9e-05 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 196 | 130 |
DEL PEAK 17(13Q14.2) MUTATED | 15 | 20 | 37 |
DEL PEAK 17(13Q14.2) WILD-TYPE | 106 | 176 | 93 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 222 | 195 |
DEL PEAK 17(13Q14.2) MUTATED | 13 | 19 | 50 |
DEL PEAK 17(13Q14.2) WILD-TYPE | 93 | 203 | 145 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 237 | 125 |
DEL PEAK 17(13Q14.2) MUTATED | 23 | 16 | 43 |
DEL PEAK 17(13Q14.2) WILD-TYPE | 138 | 221 | 82 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 17(13Q14.2) MUTATED | 14 | 16 | 50 |
DEL PEAK 17(13Q14.2) WILD-TYPE | 110 | 188 | 132 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 17(13Q14.2) MUTATED | 20 | 33 | 14 | 13 |
DEL PEAK 17(13Q14.2) WILD-TYPE | 124 | 101 | 181 | 24 |
P value = 7e-05 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 33 | 24 | 13 |
DEL PEAK 18(14Q31.1) MUTATED | 10 | 19 | 2 |
DEL PEAK 18(14Q31.1) WILD-TYPE | 23 | 5 | 11 |
P value = 0.00041 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 11 | 12 | 4 | 11 | 13 | 9 | 10 |
DEL PEAK 18(14Q31.1) MUTATED | 4 | 7 | 1 | 11 | 5 | 1 | 2 |
DEL PEAK 18(14Q31.1) WILD-TYPE | 7 | 5 | 3 | 0 | 8 | 8 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 238 | 135 | 155 |
DEL PEAK 18(14Q31.1) MUTATED | 70 | 47 | 111 |
DEL PEAK 18(14Q31.1) WILD-TYPE | 168 | 88 | 44 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 128 | 76 | 110 |
DEL PEAK 18(14Q31.1) MUTATED | 32 | 36 | 65 |
DEL PEAK 18(14Q31.1) WILD-TYPE | 96 | 40 | 45 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 108 | 62 | 75 | 80 | 79 | 43 |
DEL PEAK 18(14Q31.1) MUTATED | 37 | 41 | 56 | 27 | 26 | 13 |
DEL PEAK 18(14Q31.1) WILD-TYPE | 71 | 21 | 19 | 53 | 53 | 30 |
P value = 4e-05 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 121 | 196 | 130 |
DEL PEAK 18(14Q31.1) MUTATED | 69 | 64 | 67 |
DEL PEAK 18(14Q31.1) WILD-TYPE | 52 | 132 | 63 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 106 | 222 | 195 |
DEL PEAK 18(14Q31.1) MUTATED | 19 | 73 | 132 |
DEL PEAK 18(14Q31.1) WILD-TYPE | 87 | 149 | 63 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 161 | 237 | 125 |
DEL PEAK 18(14Q31.1) MUTATED | 71 | 78 | 75 |
DEL PEAK 18(14Q31.1) WILD-TYPE | 90 | 159 | 50 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 124 | 204 | 182 |
DEL PEAK 18(14Q31.1) MUTATED | 38 | 66 | 118 |
DEL PEAK 18(14Q31.1) WILD-TYPE | 86 | 138 | 64 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 144 | 134 | 195 | 37 |
DEL PEAK 18(14Q31.1) MUTATED | 52 | 84 | 62 | 24 |
DEL PEAK 18(14Q31.1) WILD-TYPE | 92 | 50 | 133 | 13 |
-
Copy number data file = transformed.cor.cli.txt
-
Molecular subtype file = KIRC-TP.transferedmergedcluster.txt
-
Number of patients = 528
-
Number of significantly focal cnvs = 30
-
Number of molecular subtypes = 12
-
Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.