This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.
Testing the association between mutation status of 25 genes and 6 molecular subtypes across 195 patients, 26 significant findings detected with P value < 0.05 and Q value < 0.25.
-
FLT3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
-
NPM1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
-
DNMT3A mutation correlated to 'METHLYATION_CNMF'.
-
IDH2 mutation correlated to 'METHLYATION_CNMF'.
-
RUNX1 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
-
WT1 mutation correlated to 'METHLYATION_CNMF'.
-
TP53 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
-
CEBPA mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
||
nMutated (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
FLT3 | 53 (27%) | 142 |
0.00031 (0.0387) |
9e-05 (0.0118) |
1e-05 (0.00144) |
0.00012 (0.0154) |
0.00061 (0.0744) |
0.00036 (0.0446) |
NPM1 | 52 (27%) | 143 |
1e-05 (0.00144) |
1e-05 (0.00144) |
1e-05 (0.00144) |
1e-05 (0.00144) |
1e-05 (0.00144) |
1e-05 (0.00144) |
RUNX1 | 18 (9%) | 177 |
0.361 (1.00) |
4e-05 (0.00528) |
0.00187 (0.223) |
9e-05 (0.0118) |
0.00043 (0.0529) |
0.00107 (0.128) |
TP53 | 15 (8%) | 180 |
1e-05 (0.00144) |
1e-05 (0.00144) |
0.00095 (0.115) |
0.00222 (0.26) |
0.00021 (0.0265) |
0.00011 (0.0142) |
DNMT3A | 49 (25%) | 146 |
0.854 (1.00) |
1e-05 (0.00144) |
0.0242 (1.00) |
0.00301 (0.343) |
0.00228 (0.264) |
0.00286 (0.329) |
IDH2 | 20 (10%) | 175 |
0.1 (1.00) |
2e-05 (0.00266) |
0.686 (1.00) |
0.343 (1.00) |
0.748 (1.00) |
0.183 (1.00) |
WT1 | 12 (6%) | 183 |
0.42 (1.00) |
1e-05 (0.00144) |
0.0817 (1.00) |
0.366 (1.00) |
0.0682 (1.00) |
0.274 (1.00) |
CEBPA | 13 (7%) | 182 |
0.593 (1.00) |
0.00804 (0.9) |
0.199 (1.00) |
0.00012 (0.0154) |
0.0355 (1.00) |
0.0101 (1.00) |
IDH1 | 18 (9%) | 177 |
1 (1.00) |
0.00218 (0.257) |
0.255 (1.00) |
0.256 (1.00) |
0.236 (1.00) |
0.805 (1.00) |
TET2 | 17 (9%) | 178 |
0.355 (1.00) |
0.516 (1.00) |
0.292 (1.00) |
0.572 (1.00) |
0.658 (1.00) |
0.847 (1.00) |
NRAS | 15 (8%) | 180 |
0.418 (1.00) |
0.887 (1.00) |
0.605 (1.00) |
0.937 (1.00) |
0.813 (1.00) |
0.665 (1.00) |
U2AF1 | 8 (4%) | 187 |
1 (1.00) |
0.149 (1.00) |
0.233 (1.00) |
0.256 (1.00) |
0.0764 (1.00) |
0.471 (1.00) |
PHF6 | 6 (3%) | 189 |
1 (1.00) |
0.0843 (1.00) |
0.73 (1.00) |
0.471 (1.00) |
0.729 (1.00) |
0.343 (1.00) |
KRAS | 8 (4%) | 187 |
0.0753 (1.00) |
0.363 (1.00) |
0.325 (1.00) |
0.647 (1.00) |
0.254 (1.00) |
0.682 (1.00) |
SMC3 | 7 (4%) | 188 |
1 (1.00) |
0.298 (1.00) |
0.551 (1.00) |
0.444 (1.00) |
0.217 (1.00) |
0.417 (1.00) |
KIT | 8 (4%) | 187 |
0.102 (1.00) |
0.13 (1.00) |
0.324 (1.00) |
0.00527 (0.596) |
0.357 (1.00) |
0.191 (1.00) |
RAD21 | 5 (3%) | 190 |
0.478 (1.00) |
0.663 (1.00) |
0.606 (1.00) |
0.184 (1.00) |
0.214 (1.00) |
0.605 (1.00) |
EZH2 | 3 (2%) | 192 |
0.103 (1.00) |
0.256 (1.00) |
0.591 (1.00) |
0.159 (1.00) |
0.419 (1.00) |
|
STAG2 | 6 (3%) | 189 |
0.563 (1.00) |
0.331 (1.00) |
0.132 (1.00) |
0.0263 (1.00) |
0.686 (1.00) |
0.0638 (1.00) |
PTPN11 | 9 (5%) | 186 |
0.681 (1.00) |
0.39 (1.00) |
0.0466 (1.00) |
0.506 (1.00) |
0.1 (1.00) |
0.205 (1.00) |
ASXL1 | 5 (3%) | 190 |
0.737 (1.00) |
0.217 (1.00) |
0.259 (1.00) |
0.591 (1.00) |
0.157 (1.00) |
0.417 (1.00) |
SUZ12 | 3 (2%) | 192 |
0.286 (1.00) |
0.332 (1.00) |
0.256 (1.00) |
0.59 (1.00) |
0.198 (1.00) |
0.141 (1.00) |
PHACTR1 | 3 (2%) | 192 |
0.331 (1.00) |
0.89 (1.00) |
0.418 (1.00) |
|||
SMC1A | 6 (3%) | 189 |
0.761 (1.00) |
0.552 (1.00) |
0.573 (1.00) |
0.244 (1.00) |
0.174 (1.00) |
0.663 (1.00) |
KDM6A | 3 (2%) | 192 |
0.55 (1.00) |
1 (1.00) |
0.89 (1.00) |
0.785 (1.00) |
P value = 0.00031 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
FLT3 MUTATED | 48 | 3 | 0 | 0 |
FLT3 WILD-TYPE | 95 | 11 | 27 | 2 |
P value = 9e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
FLT3 MUTATED | 24 | 11 | 8 | 2 | 7 |
FLT3 WILD-TYPE | 22 | 33 | 57 | 12 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
FLT3 MUTATED | 6 | 17 | 23 |
FLT3 WILD-TYPE | 67 | 33 | 22 |
P value = 0.00012 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
FLT3 MUTATED | 5 | 2 | 2 | 6 | 14 | 17 |
FLT3 WILD-TYPE | 11 | 11 | 13 | 51 | 12 | 24 |
P value = 0.00061 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
FLT3 MUTATED | 23 | 4 | 6 | 18 |
FLT3 WILD-TYPE | 34 | 34 | 36 | 28 |
P value = 0.00036 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
FLT3 MUTATED | 30 | 5 | 16 |
FLT3 WILD-TYPE | 37 | 30 | 65 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
NPM1 MUTATED | 50 | 0 | 0 | 0 |
NPM1 WILD-TYPE | 93 | 14 | 27 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
NPM1 MUTATED | 34 | 0 | 4 | 9 | 4 |
NPM1 WILD-TYPE | 12 | 44 | 61 | 5 | 16 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
NPM1 MUTATED | 1 | 20 | 25 |
NPM1 WILD-TYPE | 72 | 30 | 20 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
NPM1 MUTATED | 0 | 0 | 0 | 1 | 23 | 22 |
NPM1 WILD-TYPE | 16 | 13 | 15 | 56 | 3 | 19 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
NPM1 MUTATED | 35 | 2 | 1 | 12 |
NPM1 WILD-TYPE | 22 | 36 | 41 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
NPM1 MUTATED | 48 | 1 | 1 |
NPM1 WILD-TYPE | 19 | 34 | 80 |
P value = 0.854 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
DNMT3A MUTATED | 36 | 4 | 5 | 0 |
DNMT3A WILD-TYPE | 107 | 10 | 22 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
DNMT3A MUTATED | 23 | 1 | 19 | 1 | 3 |
DNMT3A WILD-TYPE | 23 | 43 | 46 | 13 | 17 |
P value = 0.0242 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
DNMT3A MUTATED | 11 | 18 | 12 |
DNMT3A WILD-TYPE | 62 | 32 | 33 |
P value = 0.00301 (Fisher's exact test), Q value = 0.34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
DNMT3A MUTATED | 0 | 3 | 0 | 14 | 11 | 13 |
DNMT3A WILD-TYPE | 16 | 10 | 15 | 43 | 15 | 28 |
P value = 0.00228 (Fisher's exact test), Q value = 0.26
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
DNMT3A MUTATED | 22 | 4 | 5 | 13 |
DNMT3A WILD-TYPE | 35 | 34 | 37 | 33 |
P value = 0.00286 (Fisher's exact test), Q value = 0.33
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
DNMT3A MUTATED | 25 | 3 | 16 |
DNMT3A WILD-TYPE | 42 | 32 | 65 |
P value = 0.1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
IDH2 MUTATED | 14 | 4 | 1 | 0 |
IDH2 WILD-TYPE | 129 | 10 | 26 | 2 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
IDH2 MUTATED | 0 | 0 | 11 | 6 | 1 |
IDH2 WILD-TYPE | 46 | 44 | 54 | 8 | 19 |
P value = 0.686 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
IDH2 MUTATED | 8 | 6 | 3 |
IDH2 WILD-TYPE | 65 | 44 | 42 |
P value = 0.343 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
IDH2 MUTATED | 0 | 2 | 0 | 9 | 2 | 4 |
IDH2 WILD-TYPE | 16 | 11 | 15 | 48 | 24 | 37 |
P value = 0.748 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
IDH2 MUTATED | 5 | 2 | 5 | 5 |
IDH2 WILD-TYPE | 52 | 36 | 37 | 41 |
P value = 0.183 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
IDH2 MUTATED | 5 | 1 | 11 |
IDH2 WILD-TYPE | 62 | 34 | 70 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
IDH1 MUTATED | 14 | 1 | 2 | 0 |
IDH1 WILD-TYPE | 129 | 13 | 25 | 2 |
P value = 0.00218 (Fisher's exact test), Q value = 0.26
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
IDH1 MUTATED | 4 | 0 | 10 | 4 | 0 |
IDH1 WILD-TYPE | 42 | 44 | 55 | 10 | 20 |
P value = 0.255 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
IDH1 MUTATED | 7 | 2 | 6 |
IDH1 WILD-TYPE | 66 | 48 | 39 |
P value = 0.256 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
IDH1 MUTATED | 0 | 0 | 0 | 8 | 4 | 3 |
IDH1 WILD-TYPE | 16 | 13 | 15 | 49 | 22 | 38 |
P value = 0.236 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
IDH1 MUTATED | 4 | 4 | 2 | 8 |
IDH1 WILD-TYPE | 53 | 34 | 40 | 38 |
P value = 0.805 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
IDH1 MUTATED | 8 | 3 | 7 |
IDH1 WILD-TYPE | 59 | 32 | 74 |
P value = 0.361 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
RUNX1 MUTATED | 12 | 3 | 3 | 0 |
RUNX1 WILD-TYPE | 131 | 11 | 24 | 2 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
RUNX1 MUTATED | 0 | 0 | 13 | 0 | 3 |
RUNX1 WILD-TYPE | 46 | 44 | 52 | 14 | 17 |
P value = 0.00187 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
RUNX1 MUTATED | 13 | 3 | 0 |
RUNX1 WILD-TYPE | 60 | 47 | 45 |
P value = 9e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
RUNX1 MUTATED | 0 | 1 | 0 | 15 | 0 | 0 |
RUNX1 WILD-TYPE | 16 | 12 | 15 | 42 | 26 | 41 |
P value = 0.00043 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
RUNX1 MUTATED | 1 | 4 | 10 | 1 |
RUNX1 WILD-TYPE | 56 | 34 | 32 | 45 |
P value = 0.00107 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
RUNX1 MUTATED | 0 | 4 | 12 |
RUNX1 WILD-TYPE | 67 | 31 | 69 |
P value = 0.355 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
TET2 MUTATED | 11 | 3 | 2 | 0 |
TET2 WILD-TYPE | 132 | 11 | 25 | 2 |
P value = 0.516 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
TET2 MUTATED | 3 | 2 | 8 | 2 | 1 |
TET2 WILD-TYPE | 43 | 42 | 57 | 12 | 19 |
P value = 0.292 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
TET2 MUTATED | 9 | 2 | 4 |
TET2 WILD-TYPE | 64 | 48 | 41 |
P value = 0.572 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
TET2 MUTATED | 0 | 0 | 2 | 7 | 3 | 3 |
TET2 WILD-TYPE | 16 | 13 | 13 | 50 | 23 | 38 |
P value = 0.658 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
TET2 MUTATED | 6 | 2 | 3 | 6 |
TET2 WILD-TYPE | 51 | 36 | 39 | 40 |
P value = 0.847 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
TET2 MUTATED | 7 | 2 | 8 |
TET2 WILD-TYPE | 60 | 33 | 73 |
P value = 0.418 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
NRAS MUTATED | 10 | 1 | 4 | 0 |
NRAS WILD-TYPE | 133 | 13 | 23 | 2 |
P value = 0.887 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
NRAS MUTATED | 4 | 3 | 5 | 2 | 1 |
NRAS WILD-TYPE | 42 | 41 | 60 | 12 | 19 |
P value = 0.605 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
NRAS MUTATED | 5 | 5 | 2 |
NRAS WILD-TYPE | 68 | 45 | 43 |
P value = 0.937 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
NRAS MUTATED | 0 | 1 | 1 | 4 | 2 | 4 |
NRAS WILD-TYPE | 16 | 12 | 14 | 53 | 24 | 37 |
P value = 0.813 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
NRAS MUTATED | 5 | 3 | 4 | 2 |
NRAS WILD-TYPE | 52 | 35 | 38 | 44 |
P value = 0.665 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
NRAS MUTATED | 7 | 2 | 5 |
NRAS WILD-TYPE | 60 | 33 | 76 |
P value = 0.42 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
WT1 MUTATED | 11 | 1 | 0 | 0 |
WT1 WILD-TYPE | 132 | 13 | 27 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
WT1 MUTATED | 1 | 1 | 0 | 2 | 7 |
WT1 WILD-TYPE | 45 | 43 | 65 | 12 | 13 |
P value = 0.0817 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
WT1 MUTATED | 2 | 2 | 6 |
WT1 WILD-TYPE | 71 | 48 | 39 |
P value = 0.366 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
WT1 MUTATED | 0 | 1 | 0 | 3 | 4 | 2 |
WT1 WILD-TYPE | 16 | 12 | 15 | 54 | 22 | 39 |
P value = 0.0682 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
WT1 MUTATED | 2 | 0 | 3 | 6 |
WT1 WILD-TYPE | 55 | 38 | 39 | 40 |
P value = 0.274 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
WT1 MUTATED | 5 | 0 | 6 |
WT1 WILD-TYPE | 62 | 35 | 75 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
U2AF1 MUTATED | 5 | 0 | 1 | 0 |
U2AF1 WILD-TYPE | 138 | 14 | 26 | 2 |
P value = 0.149 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
U2AF1 MUTATED | 1 | 0 | 6 | 0 | 1 |
U2AF1 WILD-TYPE | 45 | 44 | 59 | 14 | 19 |
P value = 0.233 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
U2AF1 MUTATED | 5 | 2 | 0 |
U2AF1 WILD-TYPE | 68 | 48 | 45 |
P value = 0.256 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
U2AF1 MUTATED | 0 | 0 | 0 | 6 | 0 | 1 |
U2AF1 WILD-TYPE | 16 | 13 | 15 | 51 | 26 | 40 |
P value = 0.0764 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
U2AF1 MUTATED | 1 | 2 | 4 | 0 |
U2AF1 WILD-TYPE | 56 | 36 | 38 | 46 |
P value = 0.471 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
U2AF1 MUTATED | 1 | 2 | 4 |
U2AF1 WILD-TYPE | 66 | 33 | 77 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
TP53 MUTATED | 0 | 2 | 13 | 0 |
TP53 WILD-TYPE | 143 | 12 | 14 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
TP53 MUTATED | 0 | 0 | 15 | 0 | 0 |
TP53 WILD-TYPE | 46 | 44 | 50 | 14 | 20 |
P value = 0.00095 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
TP53 MUTATED | 12 | 1 | 0 |
TP53 WILD-TYPE | 61 | 49 | 45 |
P value = 0.00222 (Fisher's exact test), Q value = 0.26
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
TP53 MUTATED | 0 | 0 | 0 | 12 | 0 | 1 |
TP53 WILD-TYPE | 16 | 13 | 15 | 45 | 26 | 40 |
P value = 0.00021 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
TP53 MUTATED | 0 | 9 | 3 | 2 |
TP53 WILD-TYPE | 57 | 29 | 39 | 44 |
P value = 0.00011 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
TP53 MUTATED | 0 | 8 | 6 |
TP53 WILD-TYPE | 67 | 27 | 75 |
P value = 0.593 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
CEBPA MUTATED | 9 | 0 | 3 | 0 |
CEBPA WILD-TYPE | 134 | 14 | 24 | 2 |
P value = 0.00804 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
CEBPA MUTATED | 0 | 6 | 2 | 2 | 3 |
CEBPA WILD-TYPE | 46 | 38 | 63 | 12 | 17 |
P value = 0.199 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
CEBPA MUTATED | 9 | 2 | 2 |
CEBPA WILD-TYPE | 64 | 48 | 43 |
P value = 0.00012 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
CEBPA MUTATED | 0 | 0 | 7 | 4 | 1 | 1 |
CEBPA WILD-TYPE | 16 | 13 | 8 | 53 | 25 | 40 |
P value = 0.0355 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
CEBPA MUTATED | 1 | 1 | 4 | 7 |
CEBPA WILD-TYPE | 56 | 37 | 38 | 39 |
P value = 0.0101 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
CEBPA MUTATED | 2 | 0 | 11 |
CEBPA WILD-TYPE | 65 | 35 | 70 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
PHF6 MUTATED | 5 | 0 | 1 | 0 |
PHF6 WILD-TYPE | 138 | 14 | 26 | 2 |
P value = 0.0843 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
PHF6 MUTATED | 1 | 1 | 1 | 0 | 3 |
PHF6 WILD-TYPE | 45 | 43 | 64 | 14 | 17 |
P value = 0.73 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
PHF6 MUTATED | 2 | 1 | 2 |
PHF6 WILD-TYPE | 71 | 49 | 43 |
P value = 0.471 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
PHF6 MUTATED | 0 | 0 | 0 | 4 | 1 | 0 |
PHF6 WILD-TYPE | 16 | 13 | 15 | 53 | 25 | 41 |
P value = 0.729 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
PHF6 MUTATED | 2 | 0 | 2 | 1 |
PHF6 WILD-TYPE | 55 | 38 | 40 | 45 |
P value = 0.343 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
PHF6 MUTATED | 1 | 0 | 4 |
PHF6 WILD-TYPE | 66 | 35 | 77 |
P value = 0.0753 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
KRAS MUTATED | 5 | 0 | 2 | 1 |
KRAS WILD-TYPE | 138 | 14 | 25 | 1 |
P value = 0.363 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
KRAS MUTATED | 1 | 0 | 3 | 1 | 1 |
KRAS WILD-TYPE | 45 | 44 | 62 | 13 | 19 |
P value = 0.325 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
KRAS MUTATED | 4 | 3 | 0 |
KRAS WILD-TYPE | 69 | 47 | 45 |
P value = 0.647 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
KRAS MUTATED | 0 | 0 | 0 | 4 | 0 | 3 |
KRAS WILD-TYPE | 16 | 13 | 15 | 53 | 26 | 38 |
P value = 0.254 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
KRAS MUTATED | 3 | 3 | 0 | 1 |
KRAS WILD-TYPE | 54 | 35 | 42 | 45 |
P value = 0.682 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
KRAS MUTATED | 3 | 2 | 2 |
KRAS WILD-TYPE | 64 | 33 | 79 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
SMC3 MUTATED | 6 | 0 | 1 | 0 |
SMC3 WILD-TYPE | 137 | 14 | 26 | 2 |
P value = 0.298 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
SMC3 MUTATED | 3 | 1 | 1 | 0 | 2 |
SMC3 WILD-TYPE | 43 | 43 | 64 | 14 | 18 |
P value = 0.551 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
SMC3 MUTATED | 2 | 2 | 3 |
SMC3 WILD-TYPE | 71 | 48 | 42 |
P value = 0.444 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
SMC3 MUTATED | 0 | 0 | 1 | 2 | 3 | 1 |
SMC3 WILD-TYPE | 16 | 13 | 14 | 55 | 23 | 40 |
P value = 0.217 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
SMC3 MUTATED | 1 | 0 | 3 | 3 |
SMC3 WILD-TYPE | 56 | 38 | 39 | 43 |
P value = 0.417 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
SMC3 MUTATED | 4 | 0 | 3 |
SMC3 WILD-TYPE | 63 | 35 | 78 |
P value = 0.102 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
KIT MUTATED | 6 | 0 | 0 | 1 |
KIT WILD-TYPE | 137 | 14 | 27 | 1 |
P value = 0.13 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
KIT MUTATED | 1 | 5 | 1 | 0 | 1 |
KIT WILD-TYPE | 45 | 39 | 64 | 14 | 19 |
P value = 0.324 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
KIT MUTATED | 4 | 3 | 0 |
KIT WILD-TYPE | 69 | 47 | 45 |
P value = 0.00527 (Fisher's exact test), Q value = 0.6
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
KIT MUTATED | 0 | 3 | 2 | 2 | 0 | 0 |
KIT WILD-TYPE | 16 | 10 | 13 | 55 | 26 | 41 |
P value = 0.357 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
KIT MUTATED | 1 | 3 | 3 | 1 |
KIT WILD-TYPE | 56 | 35 | 39 | 45 |
P value = 0.191 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
KIT MUTATED | 1 | 3 | 4 |
KIT WILD-TYPE | 66 | 32 | 77 |
P value = 0.478 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
RAD21 MUTATED | 4 | 1 | 0 | 0 |
RAD21 WILD-TYPE | 139 | 13 | 27 | 2 |
P value = 0.663 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
RAD21 MUTATED | 3 | 1 | 1 | 0 | 0 |
RAD21 WILD-TYPE | 43 | 43 | 64 | 14 | 20 |
P value = 0.606 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
RAD21 MUTATED | 1 | 2 | 2 |
RAD21 WILD-TYPE | 72 | 48 | 43 |
P value = 0.184 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
RAD21 MUTATED | 0 | 0 | 1 | 0 | 2 | 2 |
RAD21 WILD-TYPE | 16 | 13 | 14 | 57 | 24 | 39 |
P value = 0.214 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
RAD21 MUTATED | 2 | 0 | 0 | 3 |
RAD21 WILD-TYPE | 55 | 38 | 42 | 43 |
P value = 0.605 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
RAD21 MUTATED | 3 | 0 | 2 |
RAD21 WILD-TYPE | 64 | 35 | 79 |
P value = 0.103 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
EZH2 MUTATED | 1 | 0 | 2 | 0 |
EZH2 WILD-TYPE | 142 | 14 | 25 | 2 |
P value = 0.256 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
EZH2 MUTATED | 3 | 0 | 0 |
EZH2 WILD-TYPE | 70 | 50 | 45 |
P value = 0.591 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
EZH2 MUTATED | 0 | 0 | 0 | 3 | 0 | 0 |
EZH2 WILD-TYPE | 16 | 13 | 15 | 54 | 26 | 41 |
P value = 0.159 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
EZH2 MUTATED | 0 | 1 | 2 | 0 |
EZH2 WILD-TYPE | 57 | 37 | 40 | 46 |
P value = 0.419 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
EZH2 MUTATED | 0 | 1 | 2 |
EZH2 WILD-TYPE | 67 | 34 | 79 |
P value = 0.563 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
STAG2 MUTATED | 5 | 1 | 0 | 0 |
STAG2 WILD-TYPE | 138 | 13 | 27 | 2 |
P value = 0.331 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
STAG2 MUTATED | 1 | 0 | 2 | 1 | 1 |
STAG2 WILD-TYPE | 45 | 44 | 63 | 13 | 19 |
P value = 0.132 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
STAG2 MUTATED | 2 | 0 | 3 |
STAG2 WILD-TYPE | 71 | 50 | 42 |
P value = 0.0263 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
STAG2 MUTATED | 0 | 0 | 0 | 1 | 4 | 0 |
STAG2 WILD-TYPE | 16 | 13 | 15 | 56 | 22 | 41 |
P value = 0.686 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
STAG2 MUTATED | 2 | 1 | 0 | 2 |
STAG2 WILD-TYPE | 55 | 37 | 42 | 44 |
P value = 0.0638 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
STAG2 MUTATED | 4 | 1 | 0 |
STAG2 WILD-TYPE | 63 | 34 | 81 |
P value = 0.681 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
PTPN11 MUTATED | 6 | 0 | 2 | 0 |
PTPN11 WILD-TYPE | 137 | 14 | 25 | 2 |
P value = 0.39 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
PTPN11 MUTATED | 4 | 1 | 2 | 0 | 2 |
PTPN11 WILD-TYPE | 42 | 43 | 63 | 14 | 18 |
P value = 0.0466 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
PTPN11 MUTATED | 1 | 2 | 5 |
PTPN11 WILD-TYPE | 72 | 48 | 40 |
P value = 0.506 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
PTPN11 MUTATED | 0 | 1 | 0 | 2 | 3 | 2 |
PTPN11 WILD-TYPE | 16 | 12 | 15 | 55 | 23 | 39 |
P value = 0.1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
PTPN11 MUTATED | 6 | 1 | 0 | 2 |
PTPN11 WILD-TYPE | 51 | 37 | 42 | 44 |
P value = 0.205 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
PTPN11 MUTATED | 6 | 1 | 2 |
PTPN11 WILD-TYPE | 61 | 34 | 79 |
P value = 0.737 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
ASXL1 MUTATED | 4 | 0 | 1 | 0 |
ASXL1 WILD-TYPE | 139 | 14 | 26 | 2 |
P value = 0.217 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
ASXL1 MUTATED | 0 | 0 | 4 | 0 | 0 |
ASXL1 WILD-TYPE | 46 | 44 | 61 | 14 | 20 |
P value = 0.259 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
ASXL1 MUTATED | 3 | 0 | 0 |
ASXL1 WILD-TYPE | 70 | 50 | 45 |
P value = 0.591 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
ASXL1 MUTATED | 0 | 0 | 0 | 3 | 0 | 0 |
ASXL1 WILD-TYPE | 16 | 13 | 15 | 54 | 26 | 41 |
P value = 0.157 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
ASXL1 MUTATED | 0 | 1 | 2 | 0 |
ASXL1 WILD-TYPE | 57 | 37 | 40 | 46 |
P value = 0.417 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
ASXL1 MUTATED | 0 | 1 | 2 |
ASXL1 WILD-TYPE | 67 | 34 | 79 |
P value = 0.286 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
SUZ12 MUTATED | 2 | 1 | 0 | 0 |
SUZ12 WILD-TYPE | 141 | 13 | 27 | 2 |
P value = 0.332 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
SUZ12 MUTATED | 0 | 0 | 2 | 0 | 1 |
SUZ12 WILD-TYPE | 46 | 44 | 63 | 14 | 19 |
P value = 0.256 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
SUZ12 MUTATED | 3 | 0 | 0 |
SUZ12 WILD-TYPE | 70 | 50 | 45 |
P value = 0.59 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
SUZ12 MUTATED | 0 | 0 | 0 | 3 | 0 | 0 |
SUZ12 WILD-TYPE | 16 | 13 | 15 | 54 | 26 | 41 |
P value = 0.198 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
SUZ12 MUTATED | 0 | 1 | 0 | 2 |
SUZ12 WILD-TYPE | 57 | 37 | 42 | 44 |
P value = 0.141 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
SUZ12 MUTATED | 0 | 2 | 1 |
SUZ12 WILD-TYPE | 67 | 33 | 80 |
P value = 0.331 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
PHACTR1 MUTATED | 0 | 0 | 2 | 0 | 1 |
PHACTR1 WILD-TYPE | 46 | 44 | 63 | 14 | 19 |
P value = 0.89 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
PHACTR1 MUTATED | 1 | 1 | 0 | 1 |
PHACTR1 WILD-TYPE | 56 | 37 | 42 | 45 |
P value = 0.418 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
PHACTR1 MUTATED | 0 | 1 | 2 |
PHACTR1 WILD-TYPE | 67 | 34 | 79 |
P value = 0.761 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
SMC1A MUTATED | 6 | 0 | 0 | 0 |
SMC1A WILD-TYPE | 137 | 14 | 27 | 2 |
P value = 0.552 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
SMC1A MUTATED | 2 | 1 | 1 | 1 | 1 |
SMC1A WILD-TYPE | 44 | 43 | 64 | 13 | 19 |
P value = 0.573 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 73 | 50 | 45 |
SMC1A MUTATED | 2 | 3 | 1 |
SMC1A WILD-TYPE | 71 | 47 | 44 |
P value = 0.244 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 16 | 13 | 15 | 57 | 26 | 41 |
SMC1A MUTATED | 0 | 0 | 1 | 1 | 0 | 4 |
SMC1A WILD-TYPE | 16 | 13 | 14 | 56 | 26 | 37 |
P value = 0.174 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
SMC1A MUTATED | 3 | 0 | 0 | 3 |
SMC1A WILD-TYPE | 54 | 38 | 42 | 43 |
P value = 0.663 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
SMC1A MUTATED | 3 | 0 | 3 |
SMC1A WILD-TYPE | 64 | 35 | 78 |
P value = 0.55 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 143 | 14 | 27 | 2 |
KDM6A MUTATED | 2 | 0 | 1 | 0 |
KDM6A WILD-TYPE | 141 | 14 | 26 | 2 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 46 | 44 | 65 | 14 | 20 |
KDM6A MUTATED | 1 | 1 | 1 | 0 | 0 |
KDM6A WILD-TYPE | 45 | 43 | 64 | 14 | 20 |
P value = 0.89 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 57 | 38 | 42 | 46 |
KDM6A MUTATED | 1 | 1 | 0 | 1 |
KDM6A WILD-TYPE | 56 | 37 | 42 | 45 |
P value = 0.785 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 35 | 81 |
KDM6A MUTATED | 1 | 1 | 1 |
KDM6A WILD-TYPE | 66 | 34 | 80 |
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Mutation data file = transformed.cor.cli.txt
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Molecular subtypes file = LAML-TB.transferedmergedcluster.txt
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Number of patients = 195
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Number of significantly mutated genes = 25
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Number of Molecular subtypes = 6
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Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.