This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 82 arm-level events and 10 molecular subtypes across 90 patients, 211 significant findings detected with P value < 0.05 and Q value < 0.25.
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1q gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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2p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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2q gain cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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4q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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5p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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5q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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6p gain cnv correlated to 'CN_CNMF'.
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7p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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7q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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8p gain cnv correlated to 'CN_CNMF'.
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8q gain cnv correlated to 'CN_CNMF'.
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9p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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9q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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10p gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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10q gain cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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11q gain cnv correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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12p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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12q gain cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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13q gain cnv correlated to 'MRNASEQ_CNMF'.
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14q gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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15q gain cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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16p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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16q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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17q gain cnv correlated to 'CN_CNMF'.
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19p gain cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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19q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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20p gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20q gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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21q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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xp gain cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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xq gain cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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1p loss cnv correlated to 'MIRSEQ_MATURE_CNMF'.
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1q loss cnv correlated to 'RPPA_CHIERARCHICAL'.
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2p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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2q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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3q loss cnv correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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4p loss cnv correlated to 'MRNASEQ_CNMF'.
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4q loss cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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5p loss cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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8p loss cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8q loss cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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9q loss cnv correlated to 'RPPA_CHIERARCHICAL'.
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11p loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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11q loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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12p loss cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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12q loss cnv correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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13q loss cnv correlated to 'CN_CNMF'.
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14q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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15q loss cnv correlated to 'MIRSEQ_CHIERARCHICAL'.
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16p loss cnv correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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16q loss cnv correlated to 'MIRSEQ_MATURE_CNMF'.
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17p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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17q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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18p loss cnv correlated to 'CN_CNMF'.
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18q loss cnv correlated to 'CN_CNMF'.
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19p loss cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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20p loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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22q loss cnv correlated to 'CN_CNMF'.
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xp loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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xq loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
14q gain | 21 (23%) | 69 |
0.0148 (0.0882) |
0.0584 (0.207) |
0.0247 (0.122) |
0.43 (0.663) |
0.00045 (0.00683) |
0.00109 (0.0135) |
1e-05 (0.00039) |
0.00017 (0.00317) |
6e-05 (0.00154) |
1e-05 (0.00039) |
16p gain | 49 (54%) | 41 |
1e-05 (0.00039) |
0.0107 (0.0752) |
1 (1.00) |
0.038 (0.159) |
1e-05 (0.00039) |
1e-05 (0.00039) |
0.0451 (0.181) |
0.026 (0.127) |
0.0293 (0.135) |
0.276 (0.5) |
20p gain | 46 (51%) | 44 |
1e-05 (0.00039) |
0.235 (0.46) |
0.00265 (0.0265) |
0.00853 (0.0636) |
0.00017 (0.00317) |
0.0001 (0.00222) |
0.00488 (0.0414) |
0.0892 (0.266) |
0.00945 (0.0686) |
0.00408 (0.0372) |
16q gain | 47 (52%) | 43 |
1e-05 (0.00039) |
0.00792 (0.0601) |
1 (1.00) |
0.322 (0.549) |
0.00011 (0.00237) |
1e-05 (0.00039) |
0.0245 (0.122) |
0.013 (0.0847) |
0.0141 (0.0873) |
0.46 (0.691) |
20q gain | 49 (54%) | 41 |
1e-05 (0.00039) |
0.0658 (0.226) |
0.0157 (0.0918) |
0.0759 (0.245) |
7e-05 (0.00174) |
0.00031 (0.00508) |
0.0187 (0.103) |
0.277 (0.5) |
0.0115 (0.0776) |
0.0145 (0.0874) |
21q gain | 31 (34%) | 59 |
0.0213 (0.112) |
0.00789 (0.0601) |
0.121 (0.318) |
0.235 (0.46) |
0.0187 (0.103) |
0.00101 (0.0129) |
0.0134 (0.0852) |
0.0204 (0.109) |
0.0029 (0.0273) |
0.0841 (0.255) |
2q gain | 12 (13%) | 78 |
0.0527 (0.197) |
0.00235 (0.0238) |
1 (1.00) |
0.174 (0.394) |
0.0183 (0.103) |
0.00285 (0.0273) |
0.0539 (0.198) |
0.00495 (0.0414) |
0.0209 (0.11) |
0.0237 (0.12) |
9q gain | 29 (32%) | 61 |
0.00033 (0.00531) |
0.00102 (0.0129) |
0.00425 (0.038) |
0.0693 (0.23) |
0.0242 (0.122) |
0.00185 (0.02) |
0.034 (0.151) |
0.35 (0.575) |
0.089 (0.266) |
0.0841 (0.255) |
10p gain | 25 (28%) | 65 |
0.002 (0.0211) |
0.0591 (0.209) |
0.0284 (0.133) |
0.0142 (0.0873) |
4e-05 (0.00113) |
0.00022 (0.00384) |
0.0343 (0.151) |
0.509 (0.719) |
0.0552 (0.199) |
0.453 (0.683) |
10q gain | 26 (29%) | 64 |
0.00156 (0.0173) |
0.0709 (0.234) |
0.0549 (0.198) |
0.0143 (0.0873) |
3e-05 (0.000946) |
0.00045 (0.00683) |
0.0205 (0.109) |
0.344 (0.567) |
0.0299 (0.136) |
0.846 (0.989) |
9p loss | 20 (22%) | 70 |
0.00165 (0.018) |
0.0475 (0.186) |
0.101 (0.288) |
0.116 (0.312) |
0.0001 (0.00222) |
0.00102 (0.0129) |
0.00931 (0.0682) |
0.14 (0.347) |
0.00431 (0.038) |
0.936 (1.00) |
17p loss | 32 (36%) | 58 |
0.00278 (0.0273) |
0.00018 (0.00321) |
0.342 (0.567) |
0.194 (0.417) |
0.0111 (0.0763) |
0.0136 (0.086) |
0.0807 (0.252) |
0.0028 (0.0273) |
0.0132 (0.0852) |
0.115 (0.311) |
2p gain | 13 (14%) | 77 |
0.00732 (0.0572) |
0.0013 (0.015) |
0.193 (0.416) |
0.342 (0.567) |
0.012 (0.0797) |
0.00026 (0.00444) |
0.372 (0.599) |
0.0187 (0.103) |
0.127 (0.326) |
0.0724 (0.238) |
4p gain | 37 (41%) | 53 |
1e-05 (0.00039) |
0.0446 (0.18) |
0.769 (0.929) |
0.466 (0.691) |
1e-05 (0.00039) |
5e-05 (0.00137) |
0.293 (0.516) |
0.00201 (0.0211) |
0.343 (0.567) |
0.862 (1) |
4q gain | 33 (37%) | 57 |
2e-05 (0.000656) |
0.0374 (0.159) |
1 (1.00) |
0.729 (0.89) |
2e-05 (0.000656) |
1e-05 (0.00039) |
0.557 (0.753) |
0.00083 (0.0112) |
0.359 (0.586) |
0.95 (1.00) |
5p gain | 57 (63%) | 33 |
1e-05 (0.00039) |
0.037 (0.159) |
0.0682 (0.227) |
0.0325 (0.146) |
0.00051 (0.00734) |
1e-05 (0.00039) |
0.252 (0.472) |
0.226 (0.454) |
0.0744 (0.243) |
0.357 (0.583) |
9p gain | 20 (22%) | 70 |
8e-05 (0.00193) |
0.00217 (0.0222) |
0.0115 (0.0776) |
0.135 (0.342) |
0.00957 (0.0688) |
0.0112 (0.0769) |
0.386 (0.621) |
0.551 (0.752) |
0.464 (0.691) |
0.251 (0.472) |
8q loss | 12 (13%) | 78 |
0.00484 (0.0414) |
0.087 (0.262) |
0.422 (0.657) |
0.0356 (0.155) |
0.0324 (0.146) |
0.124 (0.324) |
0.0765 (0.246) |
0.0342 (0.151) |
0.182 (0.404) |
0.0375 (0.159) |
16p loss | 6 (7%) | 84 |
0.126 (0.324) |
0.0503 (0.194) |
1 (1.00) |
0.0469 (0.185) |
0.00214 (0.0222) |
0.00431 (0.038) |
0.013 (0.0847) |
0.443 (0.675) |
0.00029 (0.00485) |
0.468 (0.691) |
5q gain | 53 (59%) | 37 |
1e-05 (0.00039) |
0.00836 (0.0629) |
0.533 (0.734) |
0.147 (0.351) |
0.0005 (0.00732) |
1e-05 (0.00039) |
0.334 (0.561) |
0.138 (0.346) |
0.21 (0.438) |
0.17 (0.389) |
12q gain | 64 (71%) | 26 |
1e-05 (0.00039) |
0.309 (0.535) |
0.503 (0.715) |
0.0281 (0.133) |
0.00057 (0.00792) |
0.00012 (0.00246) |
0.235 (0.46) |
0.454 (0.683) |
0.219 (0.448) |
0.591 (0.796) |
15q gain | 11 (12%) | 79 |
0.0945 (0.275) |
0.0462 (0.184) |
0.193 (0.416) |
0.845 (0.989) |
0.011 (0.0762) |
0.00545 (0.0438) |
0.363 (0.59) |
0.00059 (0.00806) |
0.504 (0.715) |
0.255 (0.475) |
19p gain | 56 (62%) | 34 |
0.00373 (0.0344) |
0.054 (0.198) |
0.196 (0.419) |
0.0189 (0.103) |
0.00122 (0.0145) |
0.00048 (0.00716) |
0.468 (0.691) |
0.47 (0.691) |
0.638 (0.832) |
0.216 (0.447) |
19q gain | 52 (58%) | 38 |
6e-05 (0.00154) |
0.05 (0.194) |
0.552 (0.752) |
0.0563 (0.202) |
0.00036 (0.00568) |
0.00102 (0.0129) |
0.143 (0.347) |
0.112 (0.309) |
0.519 (0.728) |
0.12 (0.317) |
xp gain | 42 (47%) | 48 |
1e-05 (0.00039) |
0.242 (0.465) |
1 (1.00) |
0.0299 (0.136) |
0.0011 (0.0135) |
0.00536 (0.0435) |
1 (1.00) |
0.0824 (0.254) |
0.427 (0.662) |
0.218 (0.448) |
xq gain | 41 (46%) | 49 |
2e-05 (0.000656) |
0.165 (0.382) |
0.767 (0.929) |
0.0438 (0.178) |
0.00128 (0.015) |
0.00877 (0.0648) |
0.795 (0.947) |
0.15 (0.355) |
0.343 (0.567) |
0.139 (0.346) |
8p loss | 16 (18%) | 74 |
0.00535 (0.0435) |
0.224 (0.453) |
0.143 (0.347) |
0.00053 (0.00749) |
0.18 (0.403) |
0.141 (0.347) |
0.179 (0.401) |
0.0238 (0.12) |
0.257 (0.476) |
0.0292 (0.135) |
17q loss | 24 (27%) | 66 |
0.015 (0.0885) |
0.00483 (0.0414) |
0.121 (0.318) |
0.518 (0.727) |
0.118 (0.313) |
0.0329 (0.147) |
0.0677 (0.227) |
0.0205 (0.109) |
0.227 (0.455) |
0.106 (0.3) |
7p gain | 48 (53%) | 42 |
1e-05 (0.00039) |
0.117 (0.313) |
0.533 (0.734) |
0.0914 (0.27) |
0.00016 (0.00312) |
0.00152 (0.0171) |
0.915 (1.00) |
0.551 (0.752) |
0.275 (0.5) |
0.288 (0.512) |
7q gain | 48 (53%) | 42 |
2e-05 (0.000656) |
0.116 (0.312) |
0.533 (0.734) |
0.243 (0.465) |
1e-05 (0.00039) |
0.00012 (0.00246) |
0.916 (1.00) |
0.328 (0.556) |
0.276 (0.5) |
0.191 (0.414) |
12p gain | 64 (71%) | 26 |
1e-05 (0.00039) |
0.208 (0.436) |
0.528 (0.734) |
0.0676 (0.227) |
0.00014 (0.0028) |
0.0001 (0.00222) |
0.248 (0.472) |
0.21 (0.438) |
0.129 (0.33) |
0.251 (0.472) |
2p loss | 17 (19%) | 73 |
0.00684 (0.0539) |
0.0276 (0.132) |
1 (1.00) |
0.66 (0.848) |
0.613 (0.815) |
0.27 (0.494) |
0.0381 (0.159) |
0.769 (0.929) |
0.228 (0.456) |
0.7 (0.87) |
2q loss | 15 (17%) | 75 |
0.00495 (0.0414) |
0.00112 (0.0135) |
1 (1.00) |
0.884 (1.00) |
0.113 (0.31) |
0.0539 (0.198) |
0.0314 (0.142) |
0.728 (0.89) |
0.071 (0.234) |
0.533 (0.734) |
4q loss | 11 (12%) | 79 |
0.24 (0.463) |
0.0964 (0.278) |
0.67 (0.858) |
0.923 (1.00) |
0.00756 (0.0585) |
0.0267 (0.13) |
0.25 (0.472) |
0.813 (0.963) |
0.0134 (0.0852) |
0.905 (1.00) |
14q loss | 18 (20%) | 72 |
0.0271 (0.131) |
0.447 (0.677) |
0.476 (0.696) |
0.0543 (0.198) |
0.0176 (0.0994) |
0.0469 (0.185) |
0.41 (0.646) |
0.527 (0.734) |
0.218 (0.448) |
0.147 (0.351) |
xp loss | 16 (18%) | 74 |
4e-05 (0.00113) |
0.395 (0.628) |
0.252 (0.472) |
0.0949 (0.275) |
0.023 (0.118) |
0.0282 (0.133) |
0.694 (0.868) |
0.0894 (0.266) |
0.156 (0.365) |
1 (1.00) |
xq loss | 15 (17%) | 75 |
0.00286 (0.0273) |
0.152 (0.356) |
0.051 (0.194) |
0.0941 (0.275) |
0.0176 (0.0994) |
0.0165 (0.0961) |
0.503 (0.715) |
0.173 (0.394) |
0.184 (0.405) |
0.624 (0.822) |
1q gain | 8 (9%) | 82 |
0.0422 (0.174) |
0.655 (0.847) |
0.326 (0.553) |
0.557 (0.753) |
0.0457 (0.183) |
0.0782 (0.249) |
0.0647 (0.223) |
0.243 (0.465) |
0.147 (0.351) |
0.851 (0.992) |
11q gain | 6 (7%) | 84 |
0.124 (0.324) |
0.174 (0.394) |
0.611 (0.815) |
0.484 (0.705) |
0.0437 (0.178) |
0.0772 (0.246) |
0.186 (0.407) |
0.368 (0.597) |
0.00533 (0.0435) |
0.391 (0.625) |
3q loss | 20 (22%) | 70 |
0.166 (0.383) |
0.165 (0.382) |
0.143 (0.347) |
0.602 (0.808) |
0.0226 (0.118) |
0.0294 (0.135) |
0.193 (0.416) |
0.341 (0.567) |
0.315 (0.541) |
0.116 (0.312) |
11p loss | 24 (27%) | 66 |
0.00649 (0.0517) |
0.0173 (0.0994) |
1 (1.00) |
0.798 (0.948) |
0.22 (0.448) |
0.189 (0.413) |
0.282 (0.506) |
0.891 (1.00) |
0.693 (0.868) |
1 (1.00) |
11q loss | 23 (26%) | 67 |
0.012 (0.0797) |
0.00308 (0.0287) |
0.729 (0.89) |
0.395 (0.628) |
0.136 (0.343) |
0.126 (0.324) |
0.107 (0.301) |
0.827 (0.973) |
0.489 (0.707) |
0.781 (0.936) |
12q loss | 4 (4%) | 86 |
0.185 (0.406) |
0.0498 (0.194) |
1 (1.00) |
0.0828 (0.254) |
0.446 (0.677) |
0.00999 (0.0709) |
0.329 (0.556) |
0.24 (0.463) |
0.677 (0.866) |
0.115 (0.311) |
20p loss | 9 (10%) | 81 |
0.0425 (0.174) |
0.306 (0.531) |
0.0514 (0.194) |
0.854 (0.993) |
0.212 (0.44) |
0.125 (0.324) |
0.068 (0.227) |
0.449 (0.68) |
0.0202 (0.109) |
0.441 (0.674) |
6p gain | 18 (20%) | 72 |
0.0175 (0.0994) |
0.683 (0.868) |
0.469 (0.691) |
0.874 (1.00) |
0.0668 (0.227) |
0.472 (0.693) |
0.163 (0.378) |
0.0544 (0.198) |
0.415 (0.649) |
0.233 (0.46) |
8p gain | 32 (36%) | 58 |
4e-05 (0.00113) |
0.141 (0.347) |
0.196 (0.419) |
0.438 (0.673) |
0.168 (0.385) |
0.147 (0.351) |
0.112 (0.309) |
0.173 (0.394) |
0.243 (0.465) |
0.516 (0.727) |
8q gain | 38 (42%) | 52 |
0.00018 (0.00321) |
0.293 (0.516) |
0.369 (0.597) |
0.468 (0.691) |
0.412 (0.648) |
0.233 (0.46) |
0.499 (0.713) |
0.261 (0.482) |
0.523 (0.731) |
0.645 (0.839) |
13q gain | 6 (7%) | 84 |
0.402 (0.636) |
0.463 (0.691) |
0.611 (0.815) |
0.723 (0.889) |
0.0398 (0.166) |
0.639 (0.832) |
0.143 (0.347) |
0.915 (1.00) |
0.181 (0.404) |
0.699 (0.87) |
17q gain | 7 (8%) | 83 |
0.0244 (0.122) |
0.341 (0.567) |
0.491 (0.707) |
0.688 (0.868) |
0.143 (0.347) |
0.208 (0.436) |
0.794 (0.947) |
0.0607 (0.213) |
0.0606 (0.213) |
|
1p loss | 29 (32%) | 61 |
0.118 (0.313) |
0.144 (0.348) |
0.533 (0.734) |
0.129 (0.33) |
0.44 (0.674) |
0.0664 (0.227) |
0.471 (0.692) |
0.409 (0.645) |
0.0273 (0.131) |
0.948 (1.00) |
1q loss | 20 (22%) | 70 |
0.206 (0.436) |
0.0885 (0.266) |
1 (1.00) |
0.0251 (0.123) |
0.962 (1.00) |
0.601 (0.808) |
0.37 (0.597) |
0.841 (0.986) |
0.0772 (0.246) |
0.49 (0.707) |
4p loss | 10 (11%) | 80 |
0.0964 (0.278) |
0.237 (0.461) |
1 (1.00) |
0.989 (1.00) |
0.0227 (0.118) |
0.0806 (0.252) |
0.312 (0.538) |
0.932 (1.00) |
0.0515 (0.194) |
1 (1.00) |
5p loss | 8 (9%) | 82 |
0.288 (0.512) |
0.0514 (0.194) |
1 (1.00) |
0.191 (0.414) |
0.229 (0.457) |
0.01 (0.0709) |
0.771 (0.93) |
0.297 (0.52) |
0.696 (0.868) |
1 (1.00) |
9q loss | 11 (12%) | 79 |
0.325 (0.553) |
0.934 (1.00) |
1 (1.00) |
0.0369 (0.159) |
0.0794 (0.251) |
0.321 (0.549) |
0.557 (0.753) |
0.494 (0.709) |
0.215 (0.445) |
0.807 (0.957) |
12p loss | 5 (6%) | 85 |
0.0926 (0.271) |
0.254 (0.474) |
1 (1.00) |
0.0825 (0.254) |
0.619 (0.821) |
0.0377 (0.159) |
0.103 (0.291) |
0.518 (0.727) |
0.427 (0.662) |
0.151 (0.355) |
13q loss | 39 (43%) | 51 |
0.0143 (0.0873) |
0.0817 (0.254) |
0.759 (0.922) |
0.944 (1.00) |
0.626 (0.822) |
0.885 (1.00) |
0.753 (0.916) |
0.305 (0.531) |
0.613 (0.815) |
0.495 (0.709) |
15q loss | 21 (23%) | 69 |
0.0804 (0.252) |
0.418 (0.652) |
0.713 (0.879) |
0.509 (0.719) |
0.11 (0.307) |
0.231 (0.459) |
0.608 (0.814) |
0.0401 (0.166) |
0.289 (0.514) |
0.875 (1.00) |
16q loss | 5 (6%) | 85 |
0.218 (0.448) |
0.0759 (0.245) |
0.611 (0.815) |
0.176 (0.396) |
0.057 (0.203) |
0.0855 (0.259) |
0.169 (0.386) |
0.306 (0.531) |
0.00152 (0.0171) |
0.699 (0.87) |
18p loss | 37 (41%) | 53 |
0.0237 (0.12) |
0.265 (0.486) |
0.55 (0.752) |
0.69 (0.868) |
0.776 (0.933) |
0.646 (0.839) |
0.694 (0.868) |
0.694 (0.868) |
0.354 (0.58) |
0.345 (0.567) |
18q loss | 35 (39%) | 55 |
0.0362 (0.157) |
0.425 (0.661) |
0.764 (0.926) |
0.534 (0.734) |
0.824 (0.972) |
0.935 (1.00) |
0.496 (0.71) |
0.914 (1.00) |
0.291 (0.516) |
0.353 (0.579) |
19p loss | 5 (6%) | 85 |
0.0926 (0.271) |
0.441 (0.674) |
0.467 (0.691) |
0.158 (0.368) |
0.0144 (0.0873) |
0.14 (0.347) |
0.718 (0.884) |
0.28 (0.504) |
0.111 (0.309) |
|
22q loss | 48 (53%) | 42 |
0.0146 (0.0874) |
0.0809 (0.252) |
0.555 (0.753) |
0.481 (0.702) |
0.62 (0.821) |
0.283 (0.507) |
0.874 (1.00) |
0.825 (0.972) |
0.682 (0.868) |
0.224 (0.453) |
1p gain | 4 (4%) | 86 |
0.184 (0.405) |
0.467 (0.691) |
||||||||
3p gain | 13 (14%) | 77 |
0.283 (0.507) |
0.068 (0.227) |
0.443 (0.675) |
0.88 (1.00) |
0.332 (0.558) |
0.365 (0.593) |
0.408 (0.644) |
0.108 (0.303) |
0.634 (0.828) |
0.388 (0.622) |
3q gain | 15 (17%) | 75 |
0.401 (0.636) |
0.0514 (0.194) |
0.476 (0.696) |
0.821 (0.97) |
0.0529 (0.197) |
0.792 (0.947) |
0.651 (0.843) |
0.245 (0.468) |
0.68 (0.868) |
0.711 (0.878) |
6q gain | 16 (18%) | 74 |
0.0747 (0.243) |
0.454 (0.683) |
1 (1.00) |
0.685 (0.868) |
0.199 (0.424) |
0.294 (0.516) |
0.299 (0.523) |
0.197 (0.42) |
0.151 (0.355) |
0.437 (0.672) |
11p gain | 5 (6%) | 85 |
0.0912 (0.27) |
1 (1.00) |
||||||||
17p gain | 5 (6%) | 85 |
0.113 (0.31) |
0.339 (0.567) |
0.491 (0.707) |
0.686 (0.868) |
0.143 (0.347) |
0.207 (0.436) |
0.795 (0.947) |
0.0615 (0.215) |
0.0627 (0.218) |
|
18p gain | 6 (7%) | 84 |
0.263 (0.484) |
0.491 (0.707) |
||||||||
18q gain | 5 (6%) | 85 |
0.493 (0.709) |
1 (1.00) |
||||||||
22q gain | 3 (3%) | 87 |
0.632 (0.827) |
0.467 (0.691) |
||||||||
3p loss | 20 (22%) | 70 |
0.257 (0.476) |
0.144 (0.348) |
0.252 (0.472) |
0.292 (0.516) |
0.111 (0.309) |
0.136 (0.343) |
0.523 (0.731) |
0.39 (0.625) |
0.684 (0.868) |
0.314 (0.54) |
5q loss | 7 (8%) | 83 |
0.897 (1.00) |
0.657 (0.847) |
1 (1.00) |
0.276 (0.5) |
0.136 (0.343) |
0.658 (0.847) |
0.126 (0.324) |
0.66 (0.848) |
0.85 (0.992) |
|
6p loss | 19 (21%) | 71 |
0.148 (0.352) |
0.851 (0.992) |
1 (1.00) |
0.234 (0.46) |
0.624 (0.822) |
0.688 (0.868) |
0.626 (0.822) |
0.0988 (0.283) |
0.728 (0.89) |
0.524 (0.731) |
6q loss | 22 (24%) | 68 |
0.0632 (0.219) |
0.861 (1) |
0.503 (0.715) |
0.271 (0.495) |
0.634 (0.828) |
0.692 (0.868) |
0.729 (0.89) |
0.175 (0.394) |
0.556 (0.753) |
0.321 (0.549) |
7p loss | 5 (6%) | 85 |
0.393 (0.626) |
0.585 (0.789) |
0.236 (0.46) |
0.206 (0.436) |
0.911 (1.00) |
0.891 (1.00) |
0.815 (0.965) |
0.414 (0.649) |
0.834 (0.98) |
0.115 (0.311) |
7q loss | 6 (7%) | 84 |
0.314 (0.54) |
0.303 (0.529) |
0.236 (0.46) |
0.781 (0.936) |
0.62 (0.821) |
0.656 (0.847) |
1 (1.00) |
0.234 (0.46) |
0.733 (0.893) |
0.151 (0.355) |
10p loss | 12 (13%) | 78 |
0.225 (0.453) |
0.429 (0.663) |
1 (1.00) |
0.0547 (0.198) |
0.267 (0.489) |
1 (1.00) |
0.683 (0.868) |
0.708 (0.876) |
1 (1.00) |
0.33 (0.557) |
10q loss | 10 (11%) | 80 |
0.538 (0.738) |
0.628 (0.824) |
1 (1.00) |
0.238 (0.462) |
0.535 (0.734) |
1 (1.00) |
1 (1.00) |
0.706 (0.876) |
1 (1.00) |
0.287 (0.512) |
19q loss | 4 (4%) | 86 |
0.184 (0.405) |
0.708 (0.876) |
1 (1.00) |
0.773 (0.931) |
0.118 (0.313) |
0.785 (0.94) |
0.207 (0.436) |
1 (1.00) |
0.432 (0.666) |
|
20q loss | 3 (3%) | 87 |
0.182 (0.404) |
0.491 (0.707) |
||||||||
21q loss | 15 (17%) | 75 |
0.115 (0.311) |
0.338 (0.566) |
0.225 (0.453) |
0.0527 (0.197) |
0.257 (0.476) |
0.252 (0.472) |
0.223 (0.453) |
0.51 (0.719) |
0.0829 (0.254) |
0.101 (0.287) |
P value = 0.0422 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
1Q GAIN MUTATED | 7 | 0 | 1 | 0 |
1Q GAIN WILD-TYPE | 29 | 26 | 15 | 12 |
P value = 0.0457 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
1Q GAIN MUTATED | 4 | 2 | 0 | 0 |
1Q GAIN WILD-TYPE | 20 | 11 | 17 | 23 |
P value = 0.00732 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
2P GAIN MUTATED | 11 | 1 | 1 | 0 |
2P GAIN WILD-TYPE | 25 | 25 | 15 | 12 |
P value = 0.0013 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
2P GAIN MUTATED | 7 | 1 | 0 | 1 | 0 |
2P GAIN WILD-TYPE | 11 | 10 | 20 | 17 | 11 |
P value = 0.012 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
2P GAIN MUTATED | 7 | 0 | 0 | 2 |
2P GAIN WILD-TYPE | 17 | 13 | 17 | 21 |
P value = 0.00026 (Fisher's exact test), Q value = 0.0044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
2P GAIN MUTATED | 8 | 0 | 1 | 0 |
2P GAIN WILD-TYPE | 15 | 23 | 6 | 24 |
P value = 0.0187 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
2P GAIN MUTATED | 0 | 1 | 1 | 6 | 1 |
2P GAIN WILD-TYPE | 16 | 26 | 10 | 14 | 3 |
P value = 0.00235 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
2Q GAIN MUTATED | 6 | 0 | 0 | 1 | 0 |
2Q GAIN WILD-TYPE | 12 | 11 | 20 | 17 | 11 |
P value = 0.0183 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
2Q GAIN MUTATED | 6 | 0 | 0 | 1 |
2Q GAIN WILD-TYPE | 18 | 13 | 17 | 22 |
P value = 0.00285 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
2Q GAIN MUTATED | 6 | 0 | 1 | 0 |
2Q GAIN WILD-TYPE | 17 | 23 | 6 | 24 |
P value = 0.00495 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
2Q GAIN MUTATED | 0 | 0 | 1 | 6 | 0 |
2Q GAIN WILD-TYPE | 16 | 27 | 10 | 14 | 4 |
P value = 0.0209 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
2Q GAIN MUTATED | 2 | 5 | 0 |
2Q GAIN WILD-TYPE | 26 | 17 | 27 |
P value = 0.0237 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 39 | 24 | 14 |
2Q GAIN MUTATED | 7 | 0 | 0 |
2Q GAIN WILD-TYPE | 32 | 24 | 14 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
4P GAIN MUTATED | 4 | 13 | 12 | 8 |
4P GAIN WILD-TYPE | 32 | 13 | 4 | 4 |
P value = 0.0446 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
4P GAIN MUTATED | 3 | 4 | 13 | 6 | 5 |
4P GAIN WILD-TYPE | 15 | 7 | 7 | 12 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
4P GAIN MUTATED | 1 | 8 | 11 | 10 |
4P GAIN WILD-TYPE | 23 | 5 | 6 | 13 |
P value = 5e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
4P GAIN MUTATED | 2 | 15 | 0 | 13 |
4P GAIN WILD-TYPE | 21 | 8 | 7 | 11 |
P value = 0.00201 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
4P GAIN MUTATED | 11 | 10 | 5 | 2 | 3 |
4P GAIN WILD-TYPE | 5 | 17 | 6 | 18 | 1 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
4Q GAIN MUTATED | 3 | 12 | 11 | 7 |
4Q GAIN WILD-TYPE | 33 | 14 | 5 | 5 |
P value = 0.0374 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
4Q GAIN MUTATED | 2 | 4 | 12 | 6 | 4 |
4Q GAIN WILD-TYPE | 16 | 7 | 8 | 12 | 7 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
4Q GAIN MUTATED | 0 | 8 | 9 | 10 |
4Q GAIN WILD-TYPE | 24 | 5 | 8 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
4Q GAIN MUTATED | 1 | 15 | 0 | 11 |
4Q GAIN WILD-TYPE | 22 | 8 | 7 | 13 |
P value = 0.00083 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
4Q GAIN MUTATED | 10 | 9 | 5 | 1 | 3 |
4Q GAIN WILD-TYPE | 6 | 18 | 6 | 19 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
5P GAIN MUTATED | 10 | 24 | 14 | 9 |
5P GAIN WILD-TYPE | 26 | 2 | 2 | 3 |
P value = 0.037 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
5P GAIN MUTATED | 7 | 5 | 15 | 14 | 9 |
5P GAIN WILD-TYPE | 11 | 6 | 5 | 4 | 2 |
P value = 0.0325 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
5P GAIN MUTATED | 4 | 5 | 6 | 1 | 4 | 4 | 5 | 1 |
5P GAIN WILD-TYPE | 4 | 2 | 1 | 2 | 0 | 0 | 1 | 5 |
P value = 0.00051 (Fisher's exact test), Q value = 0.0073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
5P GAIN MUTATED | 7 | 10 | 14 | 18 |
5P GAIN WILD-TYPE | 17 | 3 | 3 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
5P GAIN MUTATED | 6 | 18 | 3 | 22 |
5P GAIN WILD-TYPE | 17 | 5 | 4 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
5Q GAIN MUTATED | 8 | 21 | 14 | 10 |
5Q GAIN WILD-TYPE | 28 | 5 | 2 | 2 |
P value = 0.00836 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
5Q GAIN MUTATED | 7 | 4 | 17 | 11 | 9 |
5Q GAIN WILD-TYPE | 11 | 7 | 3 | 7 | 2 |
P value = 5e-04 (Fisher's exact test), Q value = 0.0073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
5Q GAIN MUTATED | 7 | 10 | 15 | 15 |
5Q GAIN WILD-TYPE | 17 | 3 | 2 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
5Q GAIN MUTATED | 5 | 19 | 3 | 20 |
5Q GAIN WILD-TYPE | 18 | 4 | 4 | 4 |
P value = 0.0175 (Fisher's exact test), Q value = 0.099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
6P GAIN MUTATED | 7 | 1 | 5 | 5 |
6P GAIN WILD-TYPE | 29 | 25 | 11 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
7P GAIN MUTATED | 8 | 20 | 12 | 8 |
7P GAIN WILD-TYPE | 28 | 6 | 4 | 4 |
P value = 0.00016 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
7P GAIN MUTATED | 6 | 12 | 13 | 11 |
7P GAIN WILD-TYPE | 18 | 1 | 4 | 12 |
P value = 0.00152 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
7P GAIN MUTATED | 7 | 19 | 2 | 14 |
7P GAIN WILD-TYPE | 16 | 4 | 5 | 10 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
7Q GAIN MUTATED | 7 | 20 | 13 | 8 |
7Q GAIN WILD-TYPE | 29 | 6 | 3 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
7Q GAIN MUTATED | 5 | 13 | 13 | 11 |
7Q GAIN WILD-TYPE | 19 | 0 | 4 | 12 |
P value = 0.00012 (Fisher's exact test), Q value = 0.0025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
7Q GAIN MUTATED | 6 | 20 | 2 | 14 |
7Q GAIN WILD-TYPE | 17 | 3 | 5 | 10 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
8P GAIN MUTATED | 5 | 18 | 4 | 5 |
8P GAIN WILD-TYPE | 31 | 8 | 12 | 7 |
P value = 0.00018 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
8Q GAIN MUTATED | 9 | 20 | 4 | 5 |
8Q GAIN WILD-TYPE | 27 | 6 | 12 | 7 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
9P GAIN MUTATED | 2 | 4 | 10 | 4 |
9P GAIN WILD-TYPE | 34 | 22 | 6 | 8 |
P value = 0.00217 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
9P GAIN MUTATED | 2 | 5 | 8 | 0 | 1 |
9P GAIN WILD-TYPE | 16 | 6 | 12 | 18 | 10 |
P value = 0.0115 (Fisher's exact test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 21 | 24 |
9P GAIN MUTATED | 1 | 9 |
9P GAIN WILD-TYPE | 20 | 15 |
P value = 0.00957 (Fisher's exact test), Q value = 0.069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
9P GAIN MUTATED | 1 | 6 | 5 | 3 |
9P GAIN WILD-TYPE | 23 | 7 | 12 | 20 |
P value = 0.0112 (Fisher's exact test), Q value = 0.077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
9P GAIN MUTATED | 3 | 10 | 0 | 2 |
9P GAIN WILD-TYPE | 20 | 13 | 7 | 22 |
P value = 0.00033 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
9Q GAIN MUTATED | 8 | 4 | 12 | 5 |
9Q GAIN WILD-TYPE | 28 | 22 | 4 | 7 |
P value = 0.00102 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
9Q GAIN MUTATED | 8 | 5 | 9 | 0 | 1 |
9Q GAIN WILD-TYPE | 10 | 6 | 11 | 18 | 10 |
P value = 0.00425 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 21 | 24 |
9Q GAIN MUTATED | 2 | 12 |
9Q GAIN WILD-TYPE | 19 | 12 |
P value = 0.0242 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
9Q GAIN MUTATED | 6 | 8 | 5 | 3 |
9Q GAIN WILD-TYPE | 18 | 5 | 12 | 20 |
P value = 0.00185 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
9Q GAIN MUTATED | 8 | 12 | 0 | 2 |
9Q GAIN WILD-TYPE | 15 | 11 | 7 | 22 |
P value = 0.034 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
9Q GAIN MUTATED | 13 | 7 | 3 |
9Q GAIN WILD-TYPE | 23 | 9 | 23 |
P value = 0.002 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
10P GAIN MUTATED | 7 | 5 | 11 | 2 |
10P GAIN WILD-TYPE | 29 | 21 | 5 | 10 |
P value = 0.0284 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 21 | 24 |
10P GAIN MUTATED | 3 | 11 |
10P GAIN WILD-TYPE | 18 | 13 |
P value = 0.0142 (Fisher's exact test), Q value = 0.087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
10P GAIN MUTATED | 6 | 3 | 0 | 2 | 1 | 1 | 0 | 1 |
10P GAIN WILD-TYPE | 2 | 4 | 7 | 1 | 3 | 3 | 6 | 5 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
10P GAIN MUTATED | 6 | 11 | 4 | 2 |
10P GAIN WILD-TYPE | 18 | 2 | 13 | 21 |
P value = 0.00022 (Fisher's exact test), Q value = 0.0038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
10P GAIN MUTATED | 7 | 14 | 1 | 1 |
10P GAIN WILD-TYPE | 16 | 9 | 6 | 23 |
P value = 0.0343 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
10P GAIN MUTATED | 13 | 7 | 3 |
10P GAIN WILD-TYPE | 23 | 9 | 23 |
P value = 0.00156 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
10Q GAIN MUTATED | 9 | 5 | 11 | 1 |
10Q GAIN WILD-TYPE | 27 | 21 | 5 | 11 |
P value = 0.0143 (Fisher's exact test), Q value = 0.087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
10Q GAIN MUTATED | 6 | 2 | 0 | 2 | 1 | 1 | 0 | 1 |
10Q GAIN WILD-TYPE | 2 | 5 | 7 | 1 | 3 | 3 | 6 | 5 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
10Q GAIN MUTATED | 7 | 11 | 3 | 2 |
10Q GAIN WILD-TYPE | 17 | 2 | 14 | 21 |
P value = 0.00045 (Fisher's exact test), Q value = 0.0068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
10Q GAIN MUTATED | 8 | 13 | 1 | 1 |
10Q GAIN WILD-TYPE | 15 | 10 | 6 | 23 |
P value = 0.0205 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
10Q GAIN MUTATED | 12 | 8 | 3 |
10Q GAIN WILD-TYPE | 24 | 8 | 23 |
P value = 0.0299 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
10Q GAIN MUTATED | 8 | 11 | 4 |
10Q GAIN WILD-TYPE | 20 | 11 | 23 |
P value = 0.0437 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
11Q GAIN MUTATED | 4 | 0 | 0 | 0 |
11Q GAIN WILD-TYPE | 20 | 13 | 17 | 23 |
P value = 0.00533 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
11Q GAIN MUTATED | 0 | 4 | 0 |
11Q GAIN WILD-TYPE | 28 | 18 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
12P GAIN MUTATED | 14 | 26 | 15 | 9 |
12P GAIN WILD-TYPE | 22 | 0 | 1 | 3 |
P value = 0.00014 (Fisher's exact test), Q value = 0.0028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
12P GAIN MUTATED | 9 | 13 | 14 | 18 |
12P GAIN WILD-TYPE | 15 | 0 | 3 | 5 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
12P GAIN MUTATED | 10 | 20 | 2 | 22 |
12P GAIN WILD-TYPE | 13 | 3 | 5 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
12Q GAIN MUTATED | 13 | 26 | 16 | 9 |
12Q GAIN WILD-TYPE | 23 | 0 | 0 | 3 |
P value = 0.0281 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
12Q GAIN MUTATED | 7 | 6 | 6 | 3 | 2 | 4 | 5 | 1 |
12Q GAIN WILD-TYPE | 1 | 1 | 1 | 0 | 2 | 0 | 1 | 5 |
P value = 0.00057 (Fisher's exact test), Q value = 0.0079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
12Q GAIN MUTATED | 10 | 13 | 14 | 18 |
12Q GAIN WILD-TYPE | 14 | 0 | 3 | 5 |
P value = 0.00012 (Fisher's exact test), Q value = 0.0025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
12Q GAIN MUTATED | 11 | 20 | 2 | 22 |
12Q GAIN WILD-TYPE | 12 | 3 | 5 | 2 |
P value = 0.0398 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
13Q GAIN MUTATED | 1 | 1 | 4 | 0 |
13Q GAIN WILD-TYPE | 23 | 12 | 13 | 23 |
P value = 0.0148 (Fisher's exact test), Q value = 0.088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
14Q GAIN MUTATED | 6 | 4 | 9 | 2 |
14Q GAIN WILD-TYPE | 30 | 22 | 7 | 10 |
P value = 0.0247 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 21 | 24 |
14Q GAIN MUTATED | 1 | 8 |
14Q GAIN WILD-TYPE | 20 | 16 |
P value = 0.00045 (Fisher's exact test), Q value = 0.0068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
14Q GAIN MUTATED | 2 | 6 | 8 | 1 |
14Q GAIN WILD-TYPE | 22 | 7 | 9 | 22 |
P value = 0.00109 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
14Q GAIN MUTATED | 3 | 12 | 0 | 2 |
14Q GAIN WILD-TYPE | 20 | 11 | 7 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
14Q GAIN MUTATED | 17 | 0 | 1 |
14Q GAIN WILD-TYPE | 19 | 16 | 25 |
P value = 0.00017 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
14Q GAIN MUTATED | 7 | 0 | 3 | 5 | 3 |
14Q GAIN WILD-TYPE | 9 | 27 | 8 | 15 | 1 |
P value = 6e-05 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
14Q GAIN MUTATED | 14 | 2 | 1 |
14Q GAIN WILD-TYPE | 14 | 20 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 39 | 24 | 14 |
14Q GAIN MUTATED | 17 | 0 | 0 |
14Q GAIN WILD-TYPE | 22 | 24 | 14 |
P value = 0.0462 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
15Q GAIN MUTATED | 0 | 2 | 6 | 1 | 1 |
15Q GAIN WILD-TYPE | 18 | 9 | 14 | 17 | 10 |
P value = 0.011 (Fisher's exact test), Q value = 0.076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
15Q GAIN MUTATED | 0 | 3 | 5 | 2 |
15Q GAIN WILD-TYPE | 24 | 10 | 12 | 21 |
P value = 0.00545 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
15Q GAIN MUTATED | 1 | 8 | 0 | 1 |
15Q GAIN WILD-TYPE | 22 | 15 | 7 | 23 |
P value = 0.00059 (Fisher's exact test), Q value = 0.0081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
15Q GAIN MUTATED | 6 | 1 | 1 | 0 | 2 |
15Q GAIN WILD-TYPE | 10 | 26 | 10 | 20 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
16P GAIN MUTATED | 6 | 26 | 11 | 6 |
16P GAIN WILD-TYPE | 30 | 0 | 5 | 6 |
P value = 0.0107 (Fisher's exact test), Q value = 0.075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
16P GAIN MUTATED | 4 | 6 | 16 | 10 | 6 |
16P GAIN WILD-TYPE | 14 | 5 | 4 | 8 | 5 |
P value = 0.038 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
16P GAIN MUTATED | 3 | 7 | 4 | 0 | 1 | 3 | 4 | 2 |
16P GAIN WILD-TYPE | 5 | 0 | 3 | 3 | 3 | 1 | 2 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
16P GAIN MUTATED | 3 | 10 | 13 | 16 |
16P GAIN WILD-TYPE | 21 | 3 | 4 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
16P GAIN MUTATED | 4 | 20 | 0 | 18 |
16P GAIN WILD-TYPE | 19 | 3 | 7 | 6 |
P value = 0.0451 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
16P GAIN MUTATED | 17 | 6 | 19 |
16P GAIN WILD-TYPE | 19 | 10 | 7 |
P value = 0.026 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
16P GAIN MUTATED | 12 | 16 | 6 | 5 | 3 |
16P GAIN WILD-TYPE | 4 | 11 | 5 | 15 | 1 |
P value = 0.0293 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
16P GAIN MUTATED | 15 | 7 | 19 |
16P GAIN WILD-TYPE | 13 | 15 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
16Q GAIN MUTATED | 5 | 25 | 11 | 6 |
16Q GAIN WILD-TYPE | 31 | 1 | 5 | 6 |
P value = 0.00792 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
16Q GAIN MUTATED | 4 | 5 | 16 | 11 | 6 |
16Q GAIN WILD-TYPE | 14 | 6 | 4 | 7 | 5 |
P value = 0.00011 (Fisher's exact test), Q value = 0.0024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
16Q GAIN MUTATED | 4 | 9 | 13 | 16 |
16Q GAIN WILD-TYPE | 20 | 4 | 4 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
16Q GAIN MUTATED | 4 | 19 | 1 | 18 |
16Q GAIN WILD-TYPE | 19 | 4 | 6 | 6 |
P value = 0.0245 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
16Q GAIN MUTATED | 18 | 5 | 19 |
16Q GAIN WILD-TYPE | 18 | 11 | 7 |
P value = 0.013 (Fisher's exact test), Q value = 0.085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
16Q GAIN MUTATED | 13 | 16 | 6 | 5 | 2 |
16Q GAIN WILD-TYPE | 3 | 11 | 5 | 15 | 2 |
P value = 0.0141 (Fisher's exact test), Q value = 0.087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
16Q GAIN MUTATED | 17 | 6 | 18 |
16Q GAIN WILD-TYPE | 11 | 16 | 9 |
P value = 0.0244 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
17Q GAIN MUTATED | 4 | 0 | 0 | 3 |
17Q GAIN WILD-TYPE | 32 | 26 | 16 | 9 |
P value = 0.00373 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
19P GAIN MUTATED | 16 | 16 | 15 | 9 |
19P GAIN WILD-TYPE | 20 | 10 | 1 | 3 |
P value = 0.0189 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
19P GAIN MUTATED | 8 | 7 | 4 | 2 | 1 | 3 | 4 | 2 |
19P GAIN WILD-TYPE | 0 | 0 | 3 | 1 | 3 | 1 | 2 | 4 |
P value = 0.00122 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
19P GAIN MUTATED | 11 | 13 | 13 | 11 |
19P GAIN WILD-TYPE | 13 | 0 | 4 | 12 |
P value = 0.00048 (Fisher's exact test), Q value = 0.0072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
19P GAIN MUTATED | 14 | 21 | 1 | 12 |
19P GAIN WILD-TYPE | 9 | 2 | 6 | 12 |
P value = 6e-05 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
19Q GAIN MUTATED | 13 | 16 | 16 | 7 |
19Q GAIN WILD-TYPE | 23 | 10 | 0 | 5 |
P value = 0.05 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
19Q GAIN MUTATED | 12 | 6 | 16 | 7 | 4 |
19Q GAIN WILD-TYPE | 6 | 5 | 4 | 11 | 7 |
P value = 0.00036 (Fisher's exact test), Q value = 0.0057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
19Q GAIN MUTATED | 10 | 13 | 12 | 9 |
19Q GAIN WILD-TYPE | 14 | 0 | 5 | 14 |
P value = 0.00102 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
19Q GAIN MUTATED | 12 | 20 | 1 | 11 |
19Q GAIN WILD-TYPE | 11 | 3 | 6 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
20P GAIN MUTATED | 6 | 22 | 11 | 7 |
20P GAIN WILD-TYPE | 30 | 4 | 5 | 5 |
P value = 0.00265 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 21 | 24 |
20P GAIN MUTATED | 16 | 7 |
20P GAIN WILD-TYPE | 5 | 17 |
P value = 0.00853 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
20P GAIN MUTATED | 5 | 2 | 6 | 1 | 1 | 4 | 4 | 0 |
20P GAIN WILD-TYPE | 3 | 5 | 1 | 2 | 3 | 0 | 2 | 6 |
P value = 0.00017 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
20P GAIN MUTATED | 4 | 9 | 8 | 18 |
20P GAIN WILD-TYPE | 20 | 4 | 9 | 5 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
20P GAIN MUTATED | 6 | 12 | 1 | 20 |
20P GAIN WILD-TYPE | 17 | 11 | 6 | 4 |
P value = 0.00488 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
20P GAIN MUTATED | 13 | 7 | 20 |
20P GAIN WILD-TYPE | 23 | 9 | 6 |
P value = 0.00945 (Fisher's exact test), Q value = 0.069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
20P GAIN MUTATED | 10 | 9 | 20 |
20P GAIN WILD-TYPE | 18 | 13 | 7 |
P value = 0.00408 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 39 | 24 | 14 |
20P GAIN MUTATED | 13 | 18 | 8 |
20P GAIN WILD-TYPE | 26 | 6 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
20Q GAIN MUTATED | 8 | 22 | 12 | 7 |
20Q GAIN WILD-TYPE | 28 | 4 | 4 | 5 |
P value = 0.0157 (Fisher's exact test), Q value = 0.092
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 21 | 24 |
20Q GAIN MUTATED | 16 | 9 |
20Q GAIN WILD-TYPE | 5 | 15 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
20Q GAIN MUTATED | 5 | 11 | 8 | 18 |
20Q GAIN WILD-TYPE | 19 | 2 | 9 | 5 |
P value = 0.00031 (Fisher's exact test), Q value = 0.0051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
20Q GAIN MUTATED | 6 | 14 | 2 | 20 |
20Q GAIN WILD-TYPE | 17 | 9 | 5 | 4 |
P value = 0.0187 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
20Q GAIN MUTATED | 15 | 8 | 20 |
20Q GAIN WILD-TYPE | 21 | 8 | 6 |
P value = 0.0115 (Fisher's exact test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
20Q GAIN MUTATED | 12 | 9 | 21 |
20Q GAIN WILD-TYPE | 16 | 13 | 6 |
P value = 0.0145 (Fisher's exact test), Q value = 0.087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 39 | 24 | 14 |
20Q GAIN MUTATED | 15 | 18 | 9 |
20Q GAIN WILD-TYPE | 24 | 6 | 5 |
P value = 0.0213 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
21Q GAIN MUTATED | 9 | 8 | 11 | 3 |
21Q GAIN WILD-TYPE | 27 | 18 | 5 | 9 |
P value = 0.00789 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
21Q GAIN MUTATED | 8 | 2 | 12 | 2 | 2 |
21Q GAIN WILD-TYPE | 10 | 9 | 8 | 16 | 9 |
P value = 0.0187 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
21Q GAIN MUTATED | 7 | 9 | 6 | 4 |
21Q GAIN WILD-TYPE | 17 | 4 | 11 | 19 |
P value = 0.00101 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
21Q GAIN MUTATED | 7 | 15 | 1 | 3 |
21Q GAIN WILD-TYPE | 16 | 8 | 6 | 21 |
P value = 0.0134 (Fisher's exact test), Q value = 0.085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
21Q GAIN MUTATED | 18 | 4 | 4 |
21Q GAIN WILD-TYPE | 18 | 12 | 22 |
P value = 0.0204 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
21Q GAIN MUTATED | 10 | 4 | 4 | 6 | 2 |
21Q GAIN WILD-TYPE | 6 | 23 | 7 | 14 | 2 |
P value = 0.0029 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
21Q GAIN MUTATED | 15 | 7 | 3 |
21Q GAIN WILD-TYPE | 13 | 15 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
XP GAIN MUTATED | 6 | 22 | 9 | 5 |
XP GAIN WILD-TYPE | 30 | 4 | 7 | 7 |
P value = 0.0299 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
XP GAIN MUTATED | 6 | 5 | 5 | 0 | 2 | 3 | 4 | 0 |
XP GAIN WILD-TYPE | 2 | 2 | 2 | 3 | 2 | 1 | 2 | 6 |
P value = 0.0011 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
XP GAIN MUTATED | 4 | 10 | 11 | 12 |
XP GAIN WILD-TYPE | 20 | 3 | 6 | 11 |
P value = 0.00536 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
XP GAIN MUTATED | 5 | 14 | 2 | 16 |
XP GAIN WILD-TYPE | 18 | 9 | 5 | 8 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
XQ GAIN MUTATED | 7 | 21 | 8 | 5 |
XQ GAIN WILD-TYPE | 29 | 5 | 8 | 7 |
P value = 0.0438 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
XQ GAIN MUTATED | 6 | 4 | 5 | 0 | 2 | 3 | 4 | 0 |
XQ GAIN WILD-TYPE | 2 | 3 | 2 | 3 | 2 | 1 | 2 | 6 |
P value = 0.00128 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
XQ GAIN MUTATED | 4 | 10 | 10 | 12 |
XQ GAIN WILD-TYPE | 20 | 3 | 7 | 11 |
P value = 0.00877 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
XQ GAIN MUTATED | 5 | 13 | 2 | 16 |
XQ GAIN WILD-TYPE | 18 | 10 | 5 | 8 |
P value = 0.0273 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
1P LOSS MUTATED | 4 | 10 | 11 |
1P LOSS WILD-TYPE | 24 | 12 | 16 |
P value = 0.0251 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
1Q LOSS MUTATED | 0 | 0 | 0 | 2 | 1 | 0 | 2 | 2 |
1Q LOSS WILD-TYPE | 8 | 7 | 7 | 1 | 3 | 4 | 4 | 4 |
P value = 0.00684 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
2P LOSS MUTATED | 4 | 2 | 5 | 6 |
2P LOSS WILD-TYPE | 32 | 24 | 11 | 6 |
P value = 0.0276 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
2P LOSS MUTATED | 1 | 1 | 7 | 2 | 5 |
2P LOSS WILD-TYPE | 17 | 10 | 13 | 16 | 6 |
P value = 0.0381 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
2P LOSS MUTATED | 8 | 0 | 8 |
2P LOSS WILD-TYPE | 28 | 16 | 18 |
P value = 0.00495 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
2Q LOSS MUTATED | 3 | 2 | 4 | 6 |
2Q LOSS WILD-TYPE | 33 | 24 | 12 | 6 |
P value = 0.00112 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
2Q LOSS MUTATED | 0 | 0 | 7 | 2 | 5 |
2Q LOSS WILD-TYPE | 18 | 11 | 13 | 16 | 6 |
P value = 0.0314 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
2Q LOSS MUTATED | 6 | 0 | 8 |
2Q LOSS WILD-TYPE | 30 | 16 | 18 |
P value = 0.0226 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
3Q LOSS MUTATED | 7 | 0 | 7 | 3 |
3Q LOSS WILD-TYPE | 17 | 13 | 10 | 20 |
P value = 0.0294 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
3Q LOSS MUTATED | 8 | 7 | 1 | 1 |
3Q LOSS WILD-TYPE | 15 | 16 | 6 | 23 |
P value = 0.0227 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
4P LOSS MUTATED | 7 | 0 | 1 | 1 |
4P LOSS WILD-TYPE | 17 | 13 | 16 | 22 |
P value = 0.00756 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
4Q LOSS MUTATED | 8 | 0 | 1 | 1 |
4Q LOSS WILD-TYPE | 16 | 13 | 16 | 22 |
P value = 0.0267 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
4Q LOSS MUTATED | 7 | 1 | 1 | 1 |
4Q LOSS WILD-TYPE | 16 | 22 | 6 | 23 |
P value = 0.0134 (Fisher's exact test), Q value = 0.085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
4Q LOSS MUTATED | 2 | 7 | 1 |
4Q LOSS WILD-TYPE | 26 | 15 | 26 |
P value = 0.01 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
5P LOSS MUTATED | 6 | 1 | 0 | 0 |
5P LOSS WILD-TYPE | 17 | 22 | 7 | 24 |
P value = 0.00535 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
8P LOSS MUTATED | 8 | 0 | 6 | 2 |
8P LOSS WILD-TYPE | 28 | 26 | 10 | 10 |
P value = 0.00053 (Fisher's exact test), Q value = 0.0075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
8P LOSS MUTATED | 1 | 1 | 0 | 2 | 0 | 0 | 0 | 5 |
8P LOSS WILD-TYPE | 7 | 6 | 7 | 1 | 4 | 4 | 6 | 1 |
P value = 0.0238 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
8P LOSS MUTATED | 2 | 2 | 1 | 5 | 3 |
8P LOSS WILD-TYPE | 14 | 25 | 10 | 15 | 1 |
P value = 0.0292 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 39 | 24 | 14 |
8P LOSS MUTATED | 11 | 1 | 1 |
8P LOSS WILD-TYPE | 28 | 23 | 13 |
P value = 0.00484 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
8Q LOSS MUTATED | 4 | 0 | 6 | 2 |
8Q LOSS WILD-TYPE | 32 | 26 | 10 | 10 |
P value = 0.0356 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
8Q LOSS MUTATED | 1 | 1 | 0 | 2 | 0 | 0 | 0 | 3 |
8Q LOSS WILD-TYPE | 7 | 6 | 7 | 1 | 4 | 4 | 6 | 3 |
P value = 0.0324 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
8Q LOSS MUTATED | 3 | 2 | 5 | 0 |
8Q LOSS WILD-TYPE | 21 | 11 | 12 | 23 |
P value = 0.0342 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
8Q LOSS MUTATED | 1 | 1 | 1 | 5 | 2 |
8Q LOSS WILD-TYPE | 15 | 26 | 10 | 15 | 2 |
P value = 0.0375 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 39 | 24 | 14 |
8Q LOSS MUTATED | 9 | 1 | 0 |
8Q LOSS WILD-TYPE | 30 | 23 | 14 |
P value = 0.00165 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
9P LOSS MUTATED | 15 | 2 | 3 | 0 |
9P LOSS WILD-TYPE | 21 | 24 | 13 | 12 |
P value = 0.0475 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
9P LOSS MUTATED | 9 | 3 | 2 | 4 | 1 |
9P LOSS WILD-TYPE | 9 | 8 | 18 | 14 | 10 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
9P LOSS MUTATED | 14 | 1 | 3 | 1 |
9P LOSS WILD-TYPE | 10 | 12 | 14 | 22 |
P value = 0.00102 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
9P LOSS MUTATED | 12 | 4 | 2 | 1 |
9P LOSS WILD-TYPE | 11 | 19 | 5 | 23 |
P value = 0.00931 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
9P LOSS MUTATED | 9 | 8 | 2 |
9P LOSS WILD-TYPE | 27 | 8 | 24 |
P value = 0.00431 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
9P LOSS MUTATED | 4 | 11 | 3 |
9P LOSS WILD-TYPE | 24 | 11 | 24 |
P value = 0.0369 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
9Q LOSS MUTATED | 0 | 0 | 0 | 0 | 1 | 0 | 3 | 1 |
9Q LOSS WILD-TYPE | 8 | 7 | 7 | 3 | 3 | 4 | 3 | 5 |
P value = 0.00649 (Fisher's exact test), Q value = 0.052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
11P LOSS MUTATED | 7 | 3 | 7 | 7 |
11P LOSS WILD-TYPE | 29 | 23 | 9 | 5 |
P value = 0.0173 (Fisher's exact test), Q value = 0.099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
11P LOSS MUTATED | 4 | 1 | 11 | 2 | 4 |
11P LOSS WILD-TYPE | 14 | 10 | 9 | 16 | 7 |
P value = 0.012 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
11Q LOSS MUTATED | 7 | 3 | 6 | 7 |
11Q LOSS WILD-TYPE | 29 | 23 | 10 | 5 |
P value = 0.00308 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
11Q LOSS MUTATED | 2 | 1 | 11 | 2 | 5 |
11Q LOSS WILD-TYPE | 16 | 10 | 9 | 16 | 6 |
P value = 0.0377 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
12P LOSS MUTATED | 2 | 1 | 2 | 0 |
12P LOSS WILD-TYPE | 21 | 22 | 5 | 24 |
P value = 0.0498 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
12Q LOSS MUTATED | 0 | 2 | 0 | 2 | 0 |
12Q LOSS WILD-TYPE | 18 | 9 | 20 | 16 | 11 |
P value = 0.00999 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
12Q LOSS MUTATED | 2 | 0 | 2 | 0 |
12Q LOSS WILD-TYPE | 21 | 23 | 5 | 24 |
P value = 0.0143 (Fisher's exact test), Q value = 0.087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
13Q LOSS MUTATED | 19 | 5 | 7 | 8 |
13Q LOSS WILD-TYPE | 17 | 21 | 9 | 4 |
P value = 0.0271 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
14Q LOSS MUTATED | 8 | 3 | 1 | 6 |
14Q LOSS WILD-TYPE | 28 | 23 | 15 | 6 |
P value = 0.0176 (Fisher's exact test), Q value = 0.099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
14Q LOSS MUTATED | 7 | 0 | 1 | 8 |
14Q LOSS WILD-TYPE | 17 | 13 | 16 | 15 |
P value = 0.0469 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
14Q LOSS MUTATED | 5 | 1 | 3 | 7 |
14Q LOSS WILD-TYPE | 18 | 22 | 4 | 17 |
P value = 0.0401 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
15Q LOSS MUTATED | 0 | 7 | 2 | 8 | 1 |
15Q LOSS WILD-TYPE | 16 | 20 | 9 | 12 | 3 |
P value = 0.0469 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
16P LOSS MUTATED | 2 | 0 | 0 | 1 | 2 | 0 | 0 | 0 |
16P LOSS WILD-TYPE | 6 | 7 | 7 | 2 | 2 | 4 | 6 | 6 |
P value = 0.00214 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
16P LOSS MUTATED | 6 | 0 | 0 | 0 |
16P LOSS WILD-TYPE | 18 | 13 | 17 | 23 |
P value = 0.00431 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
16P LOSS MUTATED | 4 | 0 | 2 | 0 |
16P LOSS WILD-TYPE | 19 | 23 | 5 | 24 |
P value = 0.013 (Fisher's exact test), Q value = 0.085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
16P LOSS MUTATED | 2 | 4 | 0 |
16P LOSS WILD-TYPE | 34 | 12 | 26 |
P value = 0.00029 (Fisher's exact test), Q value = 0.0049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
16P LOSS MUTATED | 0 | 6 | 0 |
16P LOSS WILD-TYPE | 28 | 16 | 27 |
P value = 0.00152 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
16Q LOSS MUTATED | 0 | 5 | 0 |
16Q LOSS WILD-TYPE | 28 | 17 | 27 |
P value = 0.00278 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
17P LOSS MUTATED | 16 | 3 | 10 | 3 |
17P LOSS WILD-TYPE | 20 | 23 | 6 | 9 |
P value = 0.00018 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
17P LOSS MUTATED | 11 | 0 | 12 | 4 | 1 |
17P LOSS WILD-TYPE | 7 | 11 | 8 | 14 | 10 |
P value = 0.0111 (Fisher's exact test), Q value = 0.076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
17P LOSS MUTATED | 14 | 4 | 7 | 3 |
17P LOSS WILD-TYPE | 10 | 9 | 10 | 20 |
P value = 0.0136 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
17P LOSS MUTATED | 12 | 11 | 2 | 3 |
17P LOSS WILD-TYPE | 11 | 12 | 5 | 21 |
P value = 0.0028 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
17P LOSS MUTATED | 5 | 8 | 0 | 13 | 2 |
17P LOSS WILD-TYPE | 11 | 19 | 11 | 7 | 2 |
P value = 0.0132 (Fisher's exact test), Q value = 0.085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
17P LOSS MUTATED | 9 | 13 | 5 |
17P LOSS WILD-TYPE | 19 | 9 | 22 |
P value = 0.015 (Fisher's exact test), Q value = 0.088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
17Q LOSS MUTATED | 10 | 3 | 9 | 2 |
17Q LOSS WILD-TYPE | 26 | 23 | 7 | 10 |
P value = 0.00483 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
17Q LOSS MUTATED | 7 | 1 | 12 | 3 | 1 |
17Q LOSS WILD-TYPE | 11 | 10 | 8 | 15 | 10 |
P value = 0.0329 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
17Q LOSS MUTATED | 9 | 11 | 1 | 3 |
17Q LOSS WILD-TYPE | 14 | 12 | 6 | 21 |
P value = 0.0205 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
17Q LOSS MUTATED | 6 | 6 | 0 | 10 | 2 |
17Q LOSS WILD-TYPE | 10 | 21 | 11 | 10 | 2 |
P value = 0.0237 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
18P LOSS MUTATED | 16 | 5 | 8 | 8 |
18P LOSS WILD-TYPE | 20 | 21 | 8 | 4 |
P value = 0.0362 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
18Q LOSS MUTATED | 15 | 5 | 7 | 8 |
18Q LOSS WILD-TYPE | 21 | 21 | 9 | 4 |
P value = 0.0144 (Fisher's exact test), Q value = 0.087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
19P LOSS MUTATED | 1 | 0 | 2 | 0 |
19P LOSS WILD-TYPE | 22 | 23 | 5 | 24 |
P value = 0.0425 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
20P LOSS MUTATED | 6 | 0 | 3 | 0 |
20P LOSS WILD-TYPE | 30 | 26 | 13 | 12 |
P value = 0.0202 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
20P LOSS MUTATED | 2 | 5 | 0 |
20P LOSS WILD-TYPE | 26 | 17 | 27 |
P value = 0.0146 (Fisher's exact test), Q value = 0.087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
22Q LOSS MUTATED | 22 | 7 | 11 | 8 |
22Q LOSS WILD-TYPE | 14 | 19 | 5 | 4 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
XP LOSS MUTATED | 14 | 0 | 0 | 2 |
XP LOSS WILD-TYPE | 22 | 26 | 16 | 10 |
P value = 0.023 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
XP LOSS MUTATED | 9 | 0 | 2 | 3 |
XP LOSS WILD-TYPE | 15 | 13 | 15 | 20 |
P value = 0.0282 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
XP LOSS MUTATED | 9 | 2 | 1 | 2 |
XP LOSS WILD-TYPE | 14 | 21 | 6 | 22 |
P value = 0.00286 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
XQ LOSS MUTATED | 12 | 1 | 0 | 2 |
XQ LOSS WILD-TYPE | 24 | 25 | 16 | 10 |
P value = 0.0176 (Fisher's exact test), Q value = 0.099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
XQ LOSS MUTATED | 9 | 0 | 3 | 2 |
XQ LOSS WILD-TYPE | 15 | 13 | 14 | 21 |
P value = 0.0165 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
XQ LOSS MUTATED | 9 | 3 | 1 | 1 |
XQ LOSS WILD-TYPE | 14 | 20 | 6 | 23 |
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/ACC-TP/15081747/transformed.cor.cli.txt
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Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/ACC-TP/15087341/ACC-TP.transferedmergedcluster.txt
-
Number of patients = 90
-
Number of significantly arm-level cnvs = 82
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.