This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 46 focal events and 10 molecular subtypes across 90 patients, 154 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_1q22 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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amp_4p16.3 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_4q35.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_5p15.33 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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amp_5q35.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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amp_6p21.31 cnv correlated to 'MIRSEQ_CHIERARCHICAL'.
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amp_6q24.3 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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amp_7p22.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_9q31.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_12q14.1 cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_14q11.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_16p13.3 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_16q22.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_16q24.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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amp_17q25.3 cnv correlated to 'CN_CNMF'.
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amp_19p13.12 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_19q12 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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amp_xp11.22 cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
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amp_xq28 cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_1p36.23 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_1q43 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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del_2q22.1 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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del_2q37.3 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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del_3q13.31 cnv correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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del_4q34.3 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_4q34.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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del_4q35.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_7q36.3 cnv correlated to 'CN_CNMF'.
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del_9p23 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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del_9p21.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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del_11p15.5 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_11q14.1 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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del_12q14.2 cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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del_13q14.2 cnv correlated to 'CN_CNMF'.
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del_14q21.2 cnv correlated to 'CN_CNMF'.
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del_16p13.3 cnv correlated to 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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del_16q23.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_17q11.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_17q21.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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del_17q24.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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del_18q21.2 cnv correlated to 'CN_CNMF'.
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del_20p12.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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del_22q12.1 cnv correlated to 'CN_CNMF'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
amp 14q11 2 | 27 (30%) | 63 |
7e-05 (0.00189) |
0.0136 (0.063) |
0.00942 (0.0498) |
0.0291 (0.105) |
6e-05 (0.00184) |
1e-05 (0.000354) |
0.00026 (0.00517) |
0.00686 (0.0429) |
0.00078 (0.0112) |
0.00119 (0.0134) |
amp 5q35 3 | 63 (70%) | 27 |
1e-05 (0.000354) |
0.00141 (0.0147) |
0.503 (0.676) |
0.00671 (0.0429) |
1e-05 (0.000354) |
1e-05 (0.000354) |
0.00648 (0.0426) |
0.0466 (0.141) |
0.0118 (0.0566) |
0.291 (0.488) |
amp 16q24 2 | 49 (54%) | 41 |
1e-05 (0.000354) |
0.0279 (0.103) |
1 (1.00) |
0.324 (0.509) |
0.00027 (0.00517) |
1e-05 (0.000354) |
0.0621 (0.174) |
0.00239 (0.0207) |
0.00555 (0.0393) |
0.381 (0.567) |
del 4q34 3 | 25 (28%) | 65 |
0.00134 (0.0143) |
0.0645 (0.18) |
0.729 (0.844) |
0.638 (0.767) |
0.0215 (0.0862) |
0.0388 (0.129) |
0.0365 (0.123) |
0.0424 (0.134) |
7e-05 (0.00189) |
0.248 (0.443) |
del 9p23 | 24 (27%) | 66 |
0.00907 (0.0497) |
0.00828 (0.0478) |
0.0549 (0.157) |
0.0509 (0.151) |
4e-05 (0.00131) |
0.00124 (0.0136) |
0.00769 (0.0459) |
0.174 (0.366) |
0.00832 (0.0478) |
0.735 (0.845) |
del 9p21 3 | 27 (30%) | 63 |
0.0069 (0.0429) |
0.0035 (0.0293) |
0.0682 (0.184) |
0.228 (0.425) |
1e-05 (0.000354) |
0.00033 (0.00607) |
0.0165 (0.0725) |
0.182 (0.372) |
0.00934 (0.0498) |
0.567 (0.713) |
amp 1q22 | 17 (19%) | 73 |
0.00812 (0.0478) |
0.00036 (0.00637) |
1 (1.00) |
0.401 (0.584) |
0.00225 (0.0202) |
0.00026 (0.00517) |
0.116 (0.277) |
0.155 (0.339) |
0.0144 (0.0657) |
0.441 (0.632) |
amp 5p15 33 | 65 (72%) | 25 |
1e-05 (0.000354) |
0.886 (0.943) |
0.729 (0.844) |
0.89 (0.946) |
0.00966 (0.0499) |
0.00093 (0.0119) |
0.0444 (0.138) |
0.179 (0.37) |
0.015 (0.067) |
0.307 (0.499) |
amp 9q31 3 | 34 (38%) | 56 |
0.00057 (0.00874) |
0.0203 (0.0825) |
0.0113 (0.0551) |
0.138 (0.317) |
0.0291 (0.105) |
0.0181 (0.077) |
0.0547 (0.157) |
0.2 (0.385) |
0.248 (0.443) |
0.128 (0.299) |
amp 19p13 12 | 58 (64%) | 32 |
0.00041 (0.0065) |
0.0342 (0.117) |
0.323 (0.509) |
0.0105 (0.0533) |
0.00198 (0.0182) |
0.0004 (0.0065) |
0.326 (0.509) |
0.481 (0.667) |
0.582 (0.725) |
0.174 (0.366) |
amp xq28 | 46 (51%) | 44 |
0.0004 (0.0065) |
0.755 (0.851) |
0.223 (0.417) |
0.0445 (0.138) |
0.0089 (0.0493) |
0.0114 (0.0551) |
0.512 (0.679) |
0.26 (0.451) |
1 (1.00) |
0.0297 (0.106) |
del 17q21 31 | 26 (29%) | 64 |
0.00408 (0.0321) |
0.00939 (0.0498) |
0.0682 (0.184) |
0.542 (0.702) |
0.0747 (0.2) |
0.0461 (0.14) |
0.036 (0.122) |
0.00522 (0.0375) |
0.185 (0.375) |
0.0612 (0.173) |
del 20p12 1 | 12 (13%) | 78 |
0.00472 (0.0356) |
0.64 (0.767) |
0.352 (0.536) |
0.621 (0.756) |
0.0424 (0.134) |
0.0273 (0.101) |
0.00626 (0.0417) |
0.514 (0.679) |
0.00159 (0.0161) |
1 (1.00) |
amp 4p16 3 | 41 (46%) | 49 |
0.00098 (0.0119) |
0.548 (0.705) |
1 (1.00) |
0.192 (0.377) |
0.0131 (0.0614) |
0.0059 (0.0405) |
0.485 (0.668) |
0.0471 (0.142) |
0.406 (0.584) |
0.952 (0.989) |
amp 4q35 1 | 29 (32%) | 61 |
1e-05 (0.000354) |
0.196 (0.382) |
0.767 (0.852) |
0.557 (0.707) |
0.00068 (0.0101) |
0.00093 (0.0119) |
0.0546 (0.157) |
0.00106 (0.0125) |
0.0673 (0.184) |
0.292 (0.488) |
amp 12q14 1 | 70 (78%) | 20 |
1e-05 (0.000354) |
0.282 (0.48) |
0.143 (0.321) |
0.0104 (0.0532) |
0.0221 (0.0867) |
0.00191 (0.0182) |
0.458 (0.652) |
0.487 (0.669) |
0.35 (0.536) |
0.0885 (0.228) |
amp 16p13 3 | 50 (56%) | 40 |
1e-05 (0.000354) |
0.259 (0.451) |
0.769 (0.852) |
0.0517 (0.152) |
0.00025 (0.00517) |
1e-05 (0.000354) |
0.0759 (0.202) |
0.00958 (0.0499) |
0.0532 (0.155) |
0.586 (0.726) |
amp 16q22 1 | 56 (62%) | 34 |
1e-05 (0.000354) |
0.369 (0.551) |
0.546 (0.705) |
0.802 (0.88) |
0.0294 (0.106) |
0.00014 (0.00322) |
0.0659 (0.181) |
0.0225 (0.0876) |
0.155 (0.339) |
0.861 (0.922) |
amp 19q12 | 56 (62%) | 34 |
0.00098 (0.0119) |
0.0203 (0.0825) |
0.369 (0.551) |
0.166 (0.354) |
0.00188 (0.0182) |
0.00112 (0.0129) |
0.197 (0.382) |
0.255 (0.449) |
0.514 (0.679) |
0.061 (0.173) |
del 4q35 1 | 30 (33%) | 60 |
0.00571 (0.0398) |
0.0123 (0.0583) |
0.528 (0.692) |
0.391 (0.581) |
0.0978 (0.242) |
0.0415 (0.133) |
0.193 (0.377) |
0.167 (0.355) |
0.00092 (0.0119) |
0.684 (0.805) |
del 16q23 1 | 11 (12%) | 79 |
0.00856 (0.048) |
0.506 (0.677) |
0.193 (0.377) |
0.232 (0.428) |
0.0416 (0.133) |
0.0107 (0.0537) |
0.272 (0.467) |
0.136 (0.315) |
0.0111 (0.0551) |
0.541 (0.702) |
del 17q24 2 | 24 (27%) | 66 |
0.00195 (0.0182) |
0.0148 (0.0668) |
0.205 (0.389) |
0.293 (0.488) |
0.16 (0.342) |
0.0412 (0.133) |
0.156 (0.339) |
0.026 (0.0981) |
0.0519 (0.152) |
0.238 (0.432) |
amp 7p22 1 | 54 (60%) | 36 |
0.00228 (0.0202) |
0.483 (0.667) |
0.746 (0.845) |
0.674 (0.795) |
0.00726 (0.0445) |
0.0324 (0.114) |
0.567 (0.713) |
0.492 (0.673) |
0.805 (0.882) |
0.134 (0.312) |
amp xp11 22 | 49 (54%) | 41 |
0.0001 (0.00256) |
0.92 (0.964) |
0.765 (0.852) |
0.0168 (0.0727) |
0.0333 (0.116) |
0.0968 (0.241) |
0.762 (0.851) |
0.143 (0.321) |
0.741 (0.845) |
0.0884 (0.228) |
del 1p36 23 | 38 (42%) | 52 |
0.0217 (0.0862) |
0.00417 (0.0321) |
0.366 (0.551) |
0.149 (0.331) |
0.0718 (0.193) |
0.00364 (0.0294) |
0.835 (0.904) |
0.56 (0.708) |
0.401 (0.584) |
0.823 (0.899) |
del 4q34 3 | 28 (31%) | 62 |
0.00161 (0.0161) |
0.00494 (0.0367) |
0.759 (0.851) |
0.145 (0.324) |
0.186 (0.375) |
0.187 (0.376) |
0.0897 (0.228) |
0.189 (0.377) |
0.00011 (0.00266) |
0.265 (0.458) |
del 11p15 5 | 27 (30%) | 63 |
0.00767 (0.0459) |
0.0204 (0.0825) |
0.746 (0.845) |
0.673 (0.795) |
0.0894 (0.228) |
0.0338 (0.117) |
0.124 (0.291) |
0.598 (0.732) |
0.393 (0.581) |
0.514 (0.679) |
del 16p13 3 | 7 (8%) | 83 |
0.0806 (0.212) |
0.558 (0.707) |
0.396 (0.581) |
0.342 (0.527) |
0.541 (0.702) |
0.00841 (0.0478) |
0.0238 (0.0911) |
0.598 (0.732) |
0.0199 (0.0825) |
0.76 (0.851) |
del 17q11 2 | 24 (27%) | 66 |
0.0154 (0.0681) |
0.00507 (0.037) |
0.205 (0.389) |
0.63 (0.763) |
0.104 (0.253) |
0.105 (0.253) |
0.259 (0.451) |
0.018 (0.077) |
0.111 (0.268) |
0.396 (0.581) |
amp 6q24 3 | 19 (21%) | 71 |
0.0234 (0.0903) |
0.909 (0.961) |
0.503 (0.676) |
0.639 (0.767) |
0.0478 (0.143) |
0.935 (0.975) |
0.67 (0.795) |
0.229 (0.425) |
0.632 (0.764) |
1 (1.00) |
del 1q43 | 18 (20%) | 72 |
0.0141 (0.065) |
0.0451 (0.139) |
0.193 (0.377) |
0.159 (0.342) |
0.585 (0.726) |
0.138 (0.317) |
0.524 (0.69) |
0.553 (0.707) |
0.192 (0.377) |
0.181 (0.371) |
del 2q22 1 | 18 (20%) | 72 |
0.0398 (0.13) |
0.00362 (0.0294) |
0.476 (0.666) |
0.794 (0.878) |
0.24 (0.432) |
0.0892 (0.228) |
0.314 (0.505) |
0.664 (0.792) |
0.406 (0.584) |
0.493 (0.673) |
del 2q37 3 | 21 (23%) | 69 |
0.00622 (0.0417) |
0.0257 (0.0977) |
0.729 (0.844) |
0.831 (0.901) |
0.3 (0.494) |
0.0918 (0.231) |
0.482 (0.667) |
0.526 (0.691) |
0.569 (0.713) |
0.938 (0.976) |
del 3q13 31 | 25 (28%) | 65 |
0.299 (0.494) |
0.0461 (0.14) |
0.177 (0.367) |
0.472 (0.662) |
0.157 (0.34) |
0.0398 (0.13) |
0.453 (0.648) |
0.2 (0.385) |
0.852 (0.917) |
0.368 (0.551) |
del 11q14 1 | 25 (28%) | 65 |
0.0193 (0.0814) |
0.00681 (0.0429) |
0.503 (0.676) |
0.551 (0.705) |
0.218 (0.413) |
0.352 (0.536) |
0.28 (0.479) |
0.745 (0.845) |
0.324 (0.509) |
0.587 (0.726) |
amp 6p21 31 | 19 (21%) | 71 |
0.065 (0.18) |
0.8 (0.88) |
0.705 (0.823) |
0.8 (0.88) |
0.0798 (0.211) |
1 (1.00) |
0.14 (0.318) |
0.0263 (0.0982) |
0.405 (0.584) |
0.301 (0.494) |
amp 17q25 3 | 18 (20%) | 72 |
0.0346 (0.118) |
0.688 (0.808) |
0.469 (0.66) |
0.1 (0.246) |
0.123 (0.291) |
0.674 (0.795) |
0.4 (0.584) |
0.693 (0.811) |
0.309 (0.499) |
0.468 (0.66) |
del 7q36 3 | 11 (12%) | 79 |
0.038 (0.127) |
0.252 (0.448) |
0.236 (0.432) |
0.664 (0.792) |
0.177 (0.367) |
0.338 (0.523) |
0.895 (0.949) |
0.737 (0.845) |
0.0963 (0.241) |
0.246 (0.442) |
del 12q14 2 | 5 (6%) | 85 |
0.0907 (0.229) |
0.222 (0.417) |
1 (1.00) |
0.177 (0.367) |
0.00091 (0.0119) |
0.594 (0.732) |
0.305 (0.498) |
0.853 (0.917) |
0.149 (0.331) |
|
del 13q14 2 | 42 (47%) | 48 |
0.00327 (0.0279) |
0.0877 (0.228) |
0.55 (0.705) |
0.841 (0.909) |
0.333 (0.517) |
0.556 (0.707) |
1 (1.00) |
0.532 (0.695) |
0.404 (0.584) |
0.826 (0.899) |
del 14q21 2 | 20 (22%) | 70 |
0.0199 (0.0825) |
0.924 (0.966) |
0.73 (0.844) |
0.581 (0.725) |
0.303 (0.496) |
0.284 (0.483) |
0.369 (0.551) |
0.733 (0.845) |
0.27 (0.465) |
0.158 (0.341) |
del 18q21 2 | 36 (40%) | 54 |
0.0314 (0.111) |
0.319 (0.507) |
0.759 (0.851) |
0.326 (0.509) |
0.824 (0.899) |
1 (1.00) |
0.496 (0.675) |
0.914 (0.964) |
0.291 (0.488) |
0.353 (0.536) |
del 22q12 1 | 50 (56%) | 40 |
0.00419 (0.0321) |
0.139 (0.317) |
0.233 (0.429) |
0.294 (0.489) |
0.748 (0.845) |
0.185 (0.375) |
0.63 (0.763) |
0.879 (0.938) |
0.917 (0.964) |
0.203 (0.389) |
del 6p24 3 | 20 (22%) | 70 |
0.112 (0.269) |
0.92 (0.964) |
0.469 (0.66) |
0.317 (0.507) |
0.621 (0.756) |
0.481 (0.667) |
1 (1.00) |
0.1 (0.246) |
1 (1.00) |
0.46 (0.652) |
del 6q26 | 21 (23%) | 69 |
0.118 (0.28) |
0.862 (0.922) |
0.503 (0.676) |
0.317 (0.507) |
0.32 (0.508) |
0.309 (0.499) |
0.505 (0.677) |
0.349 (0.536) |
0.223 (0.417) |
0.596 (0.732) |
del 10q23 1 | 11 (12%) | 79 |
0.255 (0.449) |
0.259 (0.451) |
1 (1.00) |
0.239 (0.432) |
0.239 (0.432) |
0.745 (0.845) |
1 (1.00) |
0.969 (1.00) |
1 (1.00) |
0.287 (0.485) |
P value = 0.00812 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
AMP PEAK 1(1Q22) MUTATED | 13 | 2 | 2 | 0 |
AMP PEAK 1(1Q22) WILD-TYPE | 23 | 24 | 14 | 12 |
P value = 0.00036 (Fisher's exact test), Q value = 0.0064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
AMP PEAK 1(1Q22) MUTATED | 9 | 2 | 0 | 4 | 0 |
AMP PEAK 1(1Q22) WILD-TYPE | 9 | 9 | 20 | 14 | 11 |
P value = 0.00225 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
AMP PEAK 1(1Q22) MUTATED | 11 | 1 | 1 | 2 |
AMP PEAK 1(1Q22) WILD-TYPE | 13 | 12 | 16 | 21 |
P value = 0.00026 (Fisher's exact test), Q value = 0.0052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 1(1Q22) MUTATED | 11 | 1 | 2 | 1 |
AMP PEAK 1(1Q22) WILD-TYPE | 12 | 22 | 5 | 23 |
P value = 0.0144 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
AMP PEAK 1(1Q22) MUTATED | 4 | 9 | 2 |
AMP PEAK 1(1Q22) WILD-TYPE | 24 | 13 | 25 |
P value = 0.00098 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
AMP PEAK 2(4P16.3) MUTATED | 8 | 13 | 11 | 9 |
AMP PEAK 2(4P16.3) WILD-TYPE | 28 | 13 | 5 | 3 |
P value = 0.0131 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
AMP PEAK 2(4P16.3) MUTATED | 5 | 7 | 12 | 10 |
AMP PEAK 2(4P16.3) WILD-TYPE | 19 | 6 | 5 | 13 |
P value = 0.0059 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 2(4P16.3) MUTATED | 5 | 15 | 1 | 13 |
AMP PEAK 2(4P16.3) WILD-TYPE | 18 | 8 | 6 | 11 |
P value = 0.0471 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
AMP PEAK 2(4P16.3) MUTATED | 11 | 10 | 6 | 5 | 3 |
AMP PEAK 2(4P16.3) WILD-TYPE | 5 | 17 | 5 | 15 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
AMP PEAK 3(4Q35.1) MUTATED | 2 | 10 | 7 | 10 |
AMP PEAK 3(4Q35.1) WILD-TYPE | 34 | 16 | 9 | 2 |
P value = 0.00068 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
AMP PEAK 3(4Q35.1) MUTATED | 1 | 4 | 9 | 11 |
AMP PEAK 3(4Q35.1) WILD-TYPE | 23 | 9 | 8 | 12 |
P value = 0.00093 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 3(4Q35.1) MUTATED | 2 | 10 | 0 | 13 |
AMP PEAK 3(4Q35.1) WILD-TYPE | 21 | 13 | 7 | 11 |
P value = 0.00106 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
AMP PEAK 3(4Q35.1) MUTATED | 7 | 10 | 6 | 0 | 2 |
AMP PEAK 3(4Q35.1) WILD-TYPE | 9 | 17 | 5 | 20 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
AMP PEAK 4(5P15.33) MUTATED | 14 | 25 | 15 | 11 |
AMP PEAK 4(5P15.33) WILD-TYPE | 22 | 1 | 1 | 1 |
P value = 0.00966 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
AMP PEAK 4(5P15.33) MUTATED | 12 | 10 | 16 | 19 |
AMP PEAK 4(5P15.33) WILD-TYPE | 12 | 3 | 1 | 4 |
P value = 0.00093 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 4(5P15.33) MUTATED | 13 | 20 | 2 | 22 |
AMP PEAK 4(5P15.33) WILD-TYPE | 10 | 3 | 5 | 2 |
P value = 0.0444 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
AMP PEAK 4(5P15.33) MUTATED | 28 | 8 | 22 |
AMP PEAK 4(5P15.33) WILD-TYPE | 8 | 8 | 4 |
P value = 0.015 (Fisher's exact test), Q value = 0.067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
AMP PEAK 4(5P15.33) MUTATED | 23 | 11 | 23 |
AMP PEAK 4(5P15.33) WILD-TYPE | 5 | 11 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
AMP PEAK 5(5Q35.3) MUTATED | 12 | 26 | 15 | 10 |
AMP PEAK 5(5Q35.3) WILD-TYPE | 24 | 0 | 1 | 2 |
P value = 0.00141 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
AMP PEAK 5(5Q35.3) MUTATED | 7 | 7 | 19 | 13 | 10 |
AMP PEAK 5(5Q35.3) WILD-TYPE | 11 | 4 | 1 | 5 | 1 |
P value = 0.00671 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
AMP PEAK 5(5Q35.3) MUTATED | 4 | 7 | 7 | 1 | 2 | 4 | 6 | 3 |
AMP PEAK 5(5Q35.3) WILD-TYPE | 4 | 0 | 0 | 2 | 2 | 0 | 0 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
AMP PEAK 5(5Q35.3) MUTATED | 7 | 12 | 16 | 20 |
AMP PEAK 5(5Q35.3) WILD-TYPE | 17 | 1 | 1 | 3 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 5(5Q35.3) MUTATED | 8 | 22 | 2 | 23 |
AMP PEAK 5(5Q35.3) WILD-TYPE | 15 | 1 | 5 | 1 |
P value = 0.00648 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
AMP PEAK 5(5Q35.3) MUTATED | 24 | 8 | 24 |
AMP PEAK 5(5Q35.3) WILD-TYPE | 12 | 8 | 2 |
P value = 0.0466 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
AMP PEAK 5(5Q35.3) MUTATED | 14 | 21 | 9 | 9 | 3 |
AMP PEAK 5(5Q35.3) WILD-TYPE | 2 | 6 | 2 | 11 | 1 |
P value = 0.0118 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
AMP PEAK 5(5Q35.3) MUTATED | 20 | 11 | 24 |
AMP PEAK 5(5Q35.3) WILD-TYPE | 8 | 11 | 3 |
P value = 0.0263 (Fisher's exact test), Q value = 0.098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
AMP PEAK 6(6P21.31) MUTATED | 5 | 2 | 5 | 2 | 0 |
AMP PEAK 6(6P21.31) WILD-TYPE | 11 | 25 | 6 | 18 | 4 |
P value = 0.0234 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
AMP PEAK 7(6Q24.3) MUTATED | 9 | 1 | 4 | 5 |
AMP PEAK 7(6Q24.3) WILD-TYPE | 27 | 25 | 12 | 7 |
P value = 0.0478 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
AMP PEAK 7(6Q24.3) MUTATED | 5 | 0 | 7 | 4 |
AMP PEAK 7(6Q24.3) WILD-TYPE | 19 | 13 | 10 | 19 |
P value = 0.00228 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
AMP PEAK 8(7P22.1) MUTATED | 13 | 20 | 13 | 8 |
AMP PEAK 8(7P22.1) WILD-TYPE | 23 | 6 | 3 | 4 |
P value = 0.00726 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
AMP PEAK 8(7P22.1) MUTATED | 10 | 12 | 13 | 12 |
AMP PEAK 8(7P22.1) WILD-TYPE | 14 | 1 | 4 | 11 |
P value = 0.0324 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 8(7P22.1) MUTATED | 12 | 19 | 2 | 14 |
AMP PEAK 8(7P22.1) WILD-TYPE | 11 | 4 | 5 | 10 |
P value = 0.00057 (Fisher's exact test), Q value = 0.0087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
AMP PEAK 9(9Q31.3) MUTATED | 11 | 5 | 13 | 5 |
AMP PEAK 9(9Q31.3) WILD-TYPE | 25 | 21 | 3 | 7 |
P value = 0.0203 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
AMP PEAK 9(9Q31.3) MUTATED | 9 | 5 | 9 | 2 | 1 |
AMP PEAK 9(9Q31.3) WILD-TYPE | 9 | 6 | 11 | 16 | 10 |
P value = 0.0113 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 21 | 24 |
AMP PEAK 9(9Q31.3) MUTATED | 3 | 13 |
AMP PEAK 9(9Q31.3) WILD-TYPE | 18 | 11 |
P value = 0.0291 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
AMP PEAK 9(9Q31.3) MUTATED | 8 | 8 | 6 | 3 |
AMP PEAK 9(9Q31.3) WILD-TYPE | 16 | 5 | 11 | 20 |
P value = 0.0181 (Fisher's exact test), Q value = 0.077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 9(9Q31.3) MUTATED | 9 | 12 | 1 | 3 |
AMP PEAK 9(9Q31.3) WILD-TYPE | 14 | 11 | 6 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
AMP PEAK 10(12Q14.1) MUTATED | 19 | 26 | 16 | 9 |
AMP PEAK 10(12Q14.1) WILD-TYPE | 17 | 0 | 0 | 3 |
P value = 0.0104 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
AMP PEAK 10(12Q14.1) MUTATED | 7 | 6 | 7 | 3 | 3 | 4 | 5 | 1 |
AMP PEAK 10(12Q14.1) WILD-TYPE | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 5 |
P value = 0.0221 (Fisher's exact test), Q value = 0.087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
AMP PEAK 10(12Q14.1) MUTATED | 14 | 13 | 14 | 19 |
AMP PEAK 10(12Q14.1) WILD-TYPE | 10 | 0 | 3 | 4 |
P value = 0.00191 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 10(12Q14.1) MUTATED | 14 | 20 | 3 | 23 |
AMP PEAK 10(12Q14.1) WILD-TYPE | 9 | 3 | 4 | 1 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
AMP PEAK 11(14Q11.2) MUTATED | 7 | 5 | 13 | 2 |
AMP PEAK 11(14Q11.2) WILD-TYPE | 29 | 21 | 3 | 10 |
P value = 0.0136 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
AMP PEAK 11(14Q11.2) MUTATED | 6 | 4 | 11 | 1 | 2 |
AMP PEAK 11(14Q11.2) WILD-TYPE | 12 | 7 | 9 | 17 | 9 |
P value = 0.00942 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 21 | 24 |
AMP PEAK 11(14Q11.2) MUTATED | 2 | 11 |
AMP PEAK 11(14Q11.2) WILD-TYPE | 19 | 13 |
P value = 0.0291 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
AMP PEAK 11(14Q11.2) MUTATED | 3 | 5 | 0 | 2 | 0 | 0 | 1 | 2 |
AMP PEAK 11(14Q11.2) WILD-TYPE | 5 | 2 | 7 | 1 | 4 | 4 | 5 | 4 |
P value = 6e-05 (Fisher's exact test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
AMP PEAK 11(14Q11.2) MUTATED | 4 | 7 | 11 | 1 |
AMP PEAK 11(14Q11.2) WILD-TYPE | 20 | 6 | 6 | 22 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 11(14Q11.2) MUTATED | 5 | 16 | 0 | 2 |
AMP PEAK 11(14Q11.2) WILD-TYPE | 18 | 7 | 7 | 22 |
P value = 0.00026 (Fisher's exact test), Q value = 0.0052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
AMP PEAK 11(14Q11.2) MUTATED | 19 | 3 | 2 |
AMP PEAK 11(14Q11.2) WILD-TYPE | 17 | 13 | 24 |
P value = 0.00686 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
AMP PEAK 11(14Q11.2) MUTATED | 9 | 3 | 3 | 6 | 3 |
AMP PEAK 11(14Q11.2) WILD-TYPE | 7 | 24 | 8 | 14 | 1 |
P value = 0.00078 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
AMP PEAK 11(14Q11.2) MUTATED | 15 | 6 | 2 |
AMP PEAK 11(14Q11.2) WILD-TYPE | 13 | 16 | 25 |
P value = 0.00119 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 39 | 24 | 14 |
AMP PEAK 11(14Q11.2) MUTATED | 19 | 3 | 1 |
AMP PEAK 11(14Q11.2) WILD-TYPE | 20 | 21 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
AMP PEAK 12(16P13.3) MUTATED | 6 | 26 | 11 | 7 |
AMP PEAK 12(16P13.3) WILD-TYPE | 30 | 0 | 5 | 5 |
P value = 0.00025 (Fisher's exact test), Q value = 0.0052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
AMP PEAK 12(16P13.3) MUTATED | 5 | 9 | 14 | 16 |
AMP PEAK 12(16P13.3) WILD-TYPE | 19 | 4 | 3 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 12(16P13.3) MUTATED | 6 | 19 | 0 | 19 |
AMP PEAK 12(16P13.3) WILD-TYPE | 17 | 4 | 7 | 5 |
P value = 0.00958 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
AMP PEAK 12(16P13.3) MUTATED | 14 | 16 | 7 | 6 | 2 |
AMP PEAK 12(16P13.3) WILD-TYPE | 2 | 11 | 4 | 14 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
AMP PEAK 13(16Q22.1) MUTATED | 10 | 26 | 14 | 6 |
AMP PEAK 13(16Q22.1) WILD-TYPE | 26 | 0 | 2 | 6 |
P value = 0.0294 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
AMP PEAK 13(16Q22.1) MUTATED | 9 | 10 | 13 | 16 |
AMP PEAK 13(16Q22.1) WILD-TYPE | 15 | 3 | 4 | 7 |
P value = 0.00014 (Fisher's exact test), Q value = 0.0032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 13(16Q22.1) MUTATED | 9 | 20 | 1 | 18 |
AMP PEAK 13(16Q22.1) WILD-TYPE | 14 | 3 | 6 | 6 |
P value = 0.0225 (Fisher's exact test), Q value = 0.088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
AMP PEAK 13(16Q22.1) MUTATED | 15 | 17 | 6 | 9 | 2 |
AMP PEAK 13(16Q22.1) WILD-TYPE | 1 | 10 | 5 | 11 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
AMP PEAK 14(16Q24.2) MUTATED | 6 | 26 | 11 | 6 |
AMP PEAK 14(16Q24.2) WILD-TYPE | 30 | 0 | 5 | 6 |
P value = 0.0279 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
AMP PEAK 14(16Q24.2) MUTATED | 5 | 6 | 16 | 11 | 6 |
AMP PEAK 14(16Q24.2) WILD-TYPE | 13 | 5 | 4 | 7 | 5 |
P value = 0.00027 (Fisher's exact test), Q value = 0.0052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
AMP PEAK 14(16Q24.2) MUTATED | 5 | 10 | 13 | 16 |
AMP PEAK 14(16Q24.2) WILD-TYPE | 19 | 3 | 4 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 14(16Q24.2) MUTATED | 5 | 20 | 1 | 18 |
AMP PEAK 14(16Q24.2) WILD-TYPE | 18 | 3 | 6 | 6 |
P value = 0.00239 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
AMP PEAK 14(16Q24.2) MUTATED | 14 | 17 | 6 | 5 | 2 |
AMP PEAK 14(16Q24.2) WILD-TYPE | 2 | 10 | 5 | 15 | 2 |
P value = 0.00555 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
AMP PEAK 14(16Q24.2) MUTATED | 18 | 6 | 19 |
AMP PEAK 14(16Q24.2) WILD-TYPE | 10 | 16 | 8 |
P value = 0.0346 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
AMP PEAK 15(17Q25.3) MUTATED | 12 | 2 | 1 | 3 |
AMP PEAK 15(17Q25.3) WILD-TYPE | 24 | 24 | 15 | 9 |
P value = 0.00041 (Fisher's exact test), Q value = 0.0065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
AMP PEAK 16(19P13.12) MUTATED | 16 | 17 | 16 | 9 |
AMP PEAK 16(19P13.12) WILD-TYPE | 20 | 9 | 0 | 3 |
P value = 0.0342 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
AMP PEAK 16(19P13.12) MUTATED | 14 | 8 | 16 | 7 | 5 |
AMP PEAK 16(19P13.12) WILD-TYPE | 4 | 3 | 4 | 11 | 6 |
P value = 0.0105 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
AMP PEAK 16(19P13.12) MUTATED | 8 | 7 | 4 | 3 | 1 | 3 | 4 | 2 |
AMP PEAK 16(19P13.12) WILD-TYPE | 0 | 0 | 3 | 0 | 3 | 1 | 2 | 4 |
P value = 0.00198 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
AMP PEAK 16(19P13.12) MUTATED | 12 | 13 | 13 | 11 |
AMP PEAK 16(19P13.12) WILD-TYPE | 12 | 0 | 4 | 12 |
P value = 4e-04 (Fisher's exact test), Q value = 0.0065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 16(19P13.12) MUTATED | 15 | 21 | 1 | 12 |
AMP PEAK 16(19P13.12) WILD-TYPE | 8 | 2 | 6 | 12 |
P value = 0.00098 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
AMP PEAK 17(19Q12) MUTATED | 17 | 15 | 16 | 8 |
AMP PEAK 17(19Q12) WILD-TYPE | 19 | 11 | 0 | 4 |
P value = 0.0203 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
AMP PEAK 17(19Q12) MUTATED | 14 | 7 | 16 | 7 | 4 |
AMP PEAK 17(19Q12) WILD-TYPE | 4 | 4 | 4 | 11 | 7 |
P value = 0.00188 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
AMP PEAK 17(19Q12) MUTATED | 12 | 13 | 12 | 10 |
AMP PEAK 17(19Q12) WILD-TYPE | 12 | 0 | 5 | 13 |
P value = 0.00112 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 17(19Q12) MUTATED | 15 | 20 | 1 | 11 |
AMP PEAK 17(19Q12) WILD-TYPE | 8 | 3 | 6 | 13 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
AMP PEAK 18(XP11.22) MUTATED | 11 | 22 | 11 | 5 |
AMP PEAK 18(XP11.22) WILD-TYPE | 25 | 4 | 5 | 7 |
P value = 0.0168 (Fisher's exact test), Q value = 0.073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
AMP PEAK 18(XP11.22) MUTATED | 7 | 6 | 5 | 1 | 3 | 3 | 4 | 0 |
AMP PEAK 18(XP11.22) WILD-TYPE | 1 | 1 | 2 | 2 | 1 | 1 | 2 | 6 |
P value = 0.0333 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
AMP PEAK 18(XP11.22) MUTATED | 8 | 10 | 12 | 12 |
AMP PEAK 18(XP11.22) WILD-TYPE | 16 | 3 | 5 | 11 |
P value = 4e-04 (Fisher's exact test), Q value = 0.0065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
AMP PEAK 19(XQ28) MUTATED | 10 | 21 | 9 | 6 |
AMP PEAK 19(XQ28) WILD-TYPE | 26 | 5 | 7 | 6 |
P value = 0.0445 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
AMP PEAK 19(XQ28) MUTATED | 6 | 5 | 6 | 1 | 2 | 3 | 4 | 0 |
AMP PEAK 19(XQ28) WILD-TYPE | 2 | 2 | 1 | 2 | 2 | 1 | 2 | 6 |
P value = 0.0089 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
AMP PEAK 19(XQ28) MUTATED | 6 | 10 | 11 | 13 |
AMP PEAK 19(XQ28) WILD-TYPE | 18 | 3 | 6 | 10 |
P value = 0.0114 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
AMP PEAK 19(XQ28) MUTATED | 8 | 14 | 1 | 17 |
AMP PEAK 19(XQ28) WILD-TYPE | 15 | 9 | 6 | 7 |
P value = 0.0297 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 39 | 24 | 14 |
AMP PEAK 19(XQ28) MUTATED | 18 | 17 | 4 |
AMP PEAK 19(XQ28) WILD-TYPE | 21 | 7 | 10 |
P value = 0.0217 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
DEL PEAK 1(1P36.23) MUTATED | 17 | 5 | 8 | 8 |
DEL PEAK 1(1P36.23) WILD-TYPE | 19 | 21 | 8 | 4 |
P value = 0.00417 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
DEL PEAK 1(1P36.23) MUTATED | 13 | 5 | 10 | 2 | 4 |
DEL PEAK 1(1P36.23) WILD-TYPE | 5 | 6 | 10 | 16 | 7 |
P value = 0.00364 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 1(1P36.23) MUTATED | 16 | 9 | 0 | 8 |
DEL PEAK 1(1P36.23) WILD-TYPE | 7 | 14 | 7 | 16 |
P value = 0.0141 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
DEL PEAK 2(1Q43) MUTATED | 4 | 3 | 5 | 6 |
DEL PEAK 2(1Q43) WILD-TYPE | 32 | 23 | 11 | 6 |
P value = 0.0451 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
DEL PEAK 2(1Q43) MUTATED | 2 | 0 | 8 | 2 | 3 |
DEL PEAK 2(1Q43) WILD-TYPE | 16 | 11 | 12 | 16 | 8 |
P value = 0.0398 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
DEL PEAK 3(2Q22.1) MUTATED | 5 | 3 | 4 | 6 |
DEL PEAK 3(2Q22.1) WILD-TYPE | 31 | 23 | 12 | 6 |
P value = 0.00362 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
DEL PEAK 3(2Q22.1) MUTATED | 1 | 0 | 8 | 2 | 5 |
DEL PEAK 3(2Q22.1) WILD-TYPE | 17 | 11 | 12 | 16 | 6 |
P value = 0.00622 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
DEL PEAK 4(2Q37.3) MUTATED | 5 | 3 | 7 | 6 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 31 | 23 | 9 | 6 |
P value = 0.0257 (Fisher's exact test), Q value = 0.098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
DEL PEAK 4(2Q37.3) MUTATED | 4 | 0 | 8 | 2 | 5 |
DEL PEAK 4(2Q37.3) WILD-TYPE | 14 | 11 | 12 | 16 | 6 |
P value = 0.0461 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
DEL PEAK 5(3Q13.31) MUTATED | 6 | 1 | 10 | 3 | 1 |
DEL PEAK 5(3Q13.31) WILD-TYPE | 12 | 10 | 10 | 15 | 10 |
P value = 0.0398 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 5(3Q13.31) MUTATED | 7 | 10 | 2 | 2 |
DEL PEAK 5(3Q13.31) WILD-TYPE | 16 | 13 | 5 | 22 |
P value = 0.00134 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
DEL PEAK 6(4Q34.3) MUTATED | 17 | 3 | 5 | 0 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 19 | 23 | 11 | 12 |
P value = 0.0215 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
DEL PEAK 6(4Q34.3) MUTATED | 11 | 2 | 3 | 2 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 13 | 11 | 14 | 21 |
P value = 0.0388 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 6(4Q34.3) MUTATED | 10 | 5 | 1 | 2 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 13 | 18 | 6 | 22 |
P value = 0.0365 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
DEL PEAK 6(4Q34.3) MUTATED | 11 | 6 | 2 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 25 | 10 | 24 |
P value = 0.0424 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
DEL PEAK 6(4Q34.3) MUTATED | 2 | 7 | 0 | 9 | 1 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 14 | 20 | 11 | 11 | 3 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
DEL PEAK 6(4Q34.3) MUTATED | 4 | 13 | 2 |
DEL PEAK 6(4Q34.3) WILD-TYPE | 24 | 9 | 25 |
P value = 0.00161 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
DEL PEAK 7(4Q34.3) MUTATED | 15 | 2 | 9 | 2 |
DEL PEAK 7(4Q34.3) WILD-TYPE | 21 | 24 | 7 | 10 |
P value = 0.00494 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
DEL PEAK 7(4Q34.3) MUTATED | 11 | 0 | 7 | 3 | 3 |
DEL PEAK 7(4Q34.3) WILD-TYPE | 7 | 11 | 13 | 15 | 8 |
P value = 0.00011 (Fisher's exact test), Q value = 0.0027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
DEL PEAK 7(4Q34.3) MUTATED | 5 | 15 | 4 |
DEL PEAK 7(4Q34.3) WILD-TYPE | 23 | 7 | 23 |
P value = 0.00571 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
DEL PEAK 8(4Q35.1) MUTATED | 17 | 4 | 8 | 1 |
DEL PEAK 8(4Q35.1) WILD-TYPE | 19 | 22 | 8 | 11 |
P value = 0.0123 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
DEL PEAK 8(4Q35.1) MUTATED | 11 | 1 | 8 | 3 | 2 |
DEL PEAK 8(4Q35.1) WILD-TYPE | 7 | 10 | 12 | 15 | 9 |
P value = 0.0415 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 8(4Q35.1) MUTATED | 10 | 10 | 1 | 3 |
DEL PEAK 8(4Q35.1) WILD-TYPE | 13 | 13 | 6 | 21 |
P value = 0.00092 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
DEL PEAK 8(4Q35.1) MUTATED | 5 | 14 | 5 |
DEL PEAK 8(4Q35.1) WILD-TYPE | 23 | 8 | 22 |
P value = 0.038 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
DEL PEAK 11(7Q36.3) MUTATED | 8 | 0 | 2 | 1 |
DEL PEAK 11(7Q36.3) WILD-TYPE | 28 | 26 | 14 | 11 |
P value = 0.00907 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
DEL PEAK 12(9P23) MUTATED | 16 | 2 | 4 | 2 |
DEL PEAK 12(9P23) WILD-TYPE | 20 | 24 | 12 | 10 |
P value = 0.00828 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
DEL PEAK 12(9P23) MUTATED | 11 | 2 | 2 | 4 | 2 |
DEL PEAK 12(9P23) WILD-TYPE | 7 | 9 | 18 | 14 | 9 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
DEL PEAK 12(9P23) MUTATED | 15 | 1 | 4 | 1 |
DEL PEAK 12(9P23) WILD-TYPE | 9 | 12 | 13 | 22 |
P value = 0.00124 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 12(9P23) MUTATED | 13 | 4 | 2 | 2 |
DEL PEAK 12(9P23) WILD-TYPE | 10 | 19 | 5 | 22 |
P value = 0.00769 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
DEL PEAK 12(9P23) MUTATED | 11 | 8 | 2 |
DEL PEAK 12(9P23) WILD-TYPE | 25 | 8 | 24 |
P value = 0.00832 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
DEL PEAK 12(9P23) MUTATED | 6 | 11 | 3 |
DEL PEAK 12(9P23) WILD-TYPE | 22 | 11 | 24 |
P value = 0.0069 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
DEL PEAK 13(9P21.3) MUTATED | 18 | 3 | 4 | 2 |
DEL PEAK 13(9P21.3) WILD-TYPE | 18 | 23 | 12 | 10 |
P value = 0.0035 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
DEL PEAK 13(9P21.3) MUTATED | 12 | 3 | 2 | 5 | 2 |
DEL PEAK 13(9P21.3) WILD-TYPE | 6 | 8 | 18 | 13 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
DEL PEAK 13(9P21.3) MUTATED | 17 | 1 | 4 | 2 |
DEL PEAK 13(9P21.3) WILD-TYPE | 7 | 12 | 13 | 21 |
P value = 0.00033 (Fisher's exact test), Q value = 0.0061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 13(9P21.3) MUTATED | 15 | 4 | 2 | 3 |
DEL PEAK 13(9P21.3) WILD-TYPE | 8 | 19 | 5 | 21 |
P value = 0.0165 (Fisher's exact test), Q value = 0.073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
DEL PEAK 13(9P21.3) MUTATED | 13 | 8 | 3 |
DEL PEAK 13(9P21.3) WILD-TYPE | 23 | 8 | 23 |
P value = 0.00934 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
DEL PEAK 13(9P21.3) MUTATED | 7 | 12 | 4 |
DEL PEAK 13(9P21.3) WILD-TYPE | 21 | 10 | 23 |
P value = 0.00767 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
DEL PEAK 15(11P15.5) MUTATED | 7 | 5 | 7 | 8 |
DEL PEAK 15(11P15.5) WILD-TYPE | 29 | 21 | 9 | 4 |
P value = 0.0204 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
DEL PEAK 15(11P15.5) MUTATED | 4 | 3 | 12 | 2 | 4 |
DEL PEAK 15(11P15.5) WILD-TYPE | 14 | 8 | 8 | 16 | 7 |
P value = 0.0338 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 15(11P15.5) MUTATED | 4 | 11 | 0 | 9 |
DEL PEAK 15(11P15.5) WILD-TYPE | 19 | 12 | 7 | 15 |
P value = 0.0193 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
DEL PEAK 16(11Q14.1) MUTATED | 9 | 3 | 6 | 7 |
DEL PEAK 16(11Q14.1) WILD-TYPE | 27 | 23 | 10 | 5 |
P value = 0.00681 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
DEL PEAK 16(11Q14.1) MUTATED | 2 | 1 | 11 | 3 | 5 |
DEL PEAK 16(11Q14.1) WILD-TYPE | 16 | 10 | 9 | 15 | 6 |
P value = 0.00091 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 17(12Q14.2) MUTATED | 2 | 0 | 3 | 0 |
DEL PEAK 17(12Q14.2) WILD-TYPE | 21 | 23 | 4 | 24 |
P value = 0.00327 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
DEL PEAK 18(13Q14.2) MUTATED | 21 | 5 | 7 | 9 |
DEL PEAK 18(13Q14.2) WILD-TYPE | 15 | 21 | 9 | 3 |
P value = 0.0199 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
DEL PEAK 19(14Q21.2) MUTATED | 7 | 3 | 3 | 7 |
DEL PEAK 19(14Q21.2) WILD-TYPE | 29 | 23 | 13 | 5 |
P value = 0.00841 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 20(16P13.3) MUTATED | 2 | 2 | 3 | 0 |
DEL PEAK 20(16P13.3) WILD-TYPE | 21 | 21 | 4 | 24 |
P value = 0.0238 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
DEL PEAK 20(16P13.3) MUTATED | 3 | 4 | 0 |
DEL PEAK 20(16P13.3) WILD-TYPE | 33 | 12 | 26 |
P value = 0.0199 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
DEL PEAK 20(16P13.3) MUTATED | 2 | 5 | 0 |
DEL PEAK 20(16P13.3) WILD-TYPE | 26 | 17 | 27 |
P value = 0.00856 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
DEL PEAK 21(16Q23.1) MUTATED | 9 | 0 | 2 | 0 |
DEL PEAK 21(16Q23.1) WILD-TYPE | 27 | 26 | 14 | 12 |
P value = 0.0416 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
DEL PEAK 21(16Q23.1) MUTATED | 6 | 1 | 0 | 1 |
DEL PEAK 21(16Q23.1) WILD-TYPE | 18 | 12 | 17 | 22 |
P value = 0.0107 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 21(16Q23.1) MUTATED | 5 | 1 | 2 | 0 |
DEL PEAK 21(16Q23.1) WILD-TYPE | 18 | 22 | 5 | 24 |
P value = 0.0111 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
DEL PEAK 21(16Q23.1) MUTATED | 1 | 6 | 1 |
DEL PEAK 21(16Q23.1) WILD-TYPE | 27 | 16 | 26 |
P value = 0.0154 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
DEL PEAK 22(17Q11.2) MUTATED | 12 | 3 | 8 | 1 |
DEL PEAK 22(17Q11.2) WILD-TYPE | 24 | 23 | 8 | 11 |
P value = 0.00507 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
DEL PEAK 22(17Q11.2) MUTATED | 7 | 0 | 11 | 4 | 1 |
DEL PEAK 22(17Q11.2) WILD-TYPE | 11 | 11 | 9 | 14 | 10 |
P value = 0.018 (Fisher's exact test), Q value = 0.077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
DEL PEAK 22(17Q11.2) MUTATED | 4 | 7 | 0 | 11 | 1 |
DEL PEAK 22(17Q11.2) WILD-TYPE | 12 | 20 | 11 | 9 | 3 |
P value = 0.00408 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
DEL PEAK 23(17Q21.31) MUTATED | 13 | 3 | 9 | 1 |
DEL PEAK 23(17Q21.31) WILD-TYPE | 23 | 23 | 7 | 11 |
P value = 0.00939 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
DEL PEAK 23(17Q21.31) MUTATED | 7 | 1 | 12 | 4 | 1 |
DEL PEAK 23(17Q21.31) WILD-TYPE | 11 | 10 | 8 | 14 | 10 |
P value = 0.0461 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 23(17Q21.31) MUTATED | 9 | 11 | 2 | 3 |
DEL PEAK 23(17Q21.31) WILD-TYPE | 14 | 12 | 5 | 21 |
P value = 0.036 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
DEL PEAK 23(17Q21.31) MUTATED | 17 | 3 | 5 |
DEL PEAK 23(17Q21.31) WILD-TYPE | 19 | 13 | 21 |
P value = 0.00522 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
DEL PEAK 23(17Q21.31) MUTATED | 6 | 6 | 0 | 12 | 1 |
DEL PEAK 23(17Q21.31) WILD-TYPE | 10 | 21 | 11 | 8 | 3 |
P value = 0.00195 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
DEL PEAK 24(17Q24.2) MUTATED | 10 | 3 | 10 | 1 |
DEL PEAK 24(17Q24.2) WILD-TYPE | 26 | 23 | 6 | 11 |
P value = 0.0148 (Fisher's exact test), Q value = 0.067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
DEL PEAK 24(17Q24.2) MUTATED | 6 | 2 | 12 | 3 | 1 |
DEL PEAK 24(17Q24.2) WILD-TYPE | 12 | 9 | 8 | 15 | 10 |
P value = 0.0412 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 24(17Q24.2) MUTATED | 8 | 11 | 1 | 3 |
DEL PEAK 24(17Q24.2) WILD-TYPE | 15 | 12 | 6 | 21 |
P value = 0.026 (Fisher's exact test), Q value = 0.098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
DEL PEAK 24(17Q24.2) MUTATED | 6 | 7 | 0 | 8 | 3 |
DEL PEAK 24(17Q24.2) WILD-TYPE | 10 | 20 | 11 | 12 | 1 |
P value = 0.0314 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
DEL PEAK 25(18Q21.2) MUTATED | 16 | 5 | 7 | 8 |
DEL PEAK 25(18Q21.2) WILD-TYPE | 20 | 21 | 9 | 4 |
P value = 0.00472 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
DEL PEAK 26(20P12.1) MUTATED | 10 | 0 | 2 | 0 |
DEL PEAK 26(20P12.1) WILD-TYPE | 26 | 26 | 14 | 12 |
P value = 0.0424 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
DEL PEAK 26(20P12.1) MUTATED | 6 | 1 | 2 | 0 |
DEL PEAK 26(20P12.1) WILD-TYPE | 18 | 12 | 15 | 23 |
P value = 0.0273 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
DEL PEAK 26(20P12.1) MUTATED | 6 | 2 | 1 | 0 |
DEL PEAK 26(20P12.1) WILD-TYPE | 17 | 21 | 6 | 24 |
P value = 0.00626 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
DEL PEAK 26(20P12.1) MUTATED | 4 | 5 | 0 |
DEL PEAK 26(20P12.1) WILD-TYPE | 32 | 11 | 26 |
P value = 0.00159 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
DEL PEAK 26(20P12.1) MUTATED | 2 | 7 | 0 |
DEL PEAK 26(20P12.1) WILD-TYPE | 26 | 15 | 27 |
P value = 0.00419 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
DEL PEAK 27(22Q12.1) MUTATED | 22 | 7 | 12 | 9 |
DEL PEAK 27(22Q12.1) WILD-TYPE | 14 | 19 | 4 | 3 |
-
Copy number data file = all_lesions.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/ACC-TP/15081748/transformed.cor.cli.txt
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Molecular subtype file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/ACC-TP/15087341/ACC-TP.transferedmergedcluster.txt
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Number of patients = 90
-
Number of significantly focal cnvs = 46
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.