This pipeline computes the correlation between significant copy number variation (cnv focal) genes and molecular subtypes.
Testing the association between copy number variation 63 focal events and 10 molecular subtypes across 295 patients, 250 significant findings detected with P value < 0.05 and Q value < 0.25.
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amp_1p31.3 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_1q21.3 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_1q44 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_2p24.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_2q33.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_3q26.31 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_3q28 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_4q12 cnv correlated to 'RPPA_CNMF'.
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amp_5p15.33 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_6p21.33 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_7p11.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_8q24.21 cnv correlated to 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_9p24.1 cnv correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
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amp_11q13.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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amp_11q22.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_13q22.1 cnv correlated to 'METHLYATION_CNMF'.
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amp_13q34 cnv correlated to 'CN_CNMF'.
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amp_17q12 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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amp_17q25.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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amp_19p13.3 cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_19q13.13 cnv correlated to 'CN_CNMF'.
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amp_20q11.21 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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amp_xq28 cnv correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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del_1p36.23 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_1p13.2 cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_2q22.1 cnv correlated to 'MRNASEQ_CNMF'.
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del_2q37.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_3p14.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_4q21.3 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_4q22.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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del_4q35.2 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_5q12.1 cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_5q35.2 cnv correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.
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del_6p24.2 cnv correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.
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del_6q26 cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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del_7q34 cnv correlated to 'CN_CNMF'.
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del_8p23.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_8p23.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_10q23.31 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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del_11p15.1 cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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del_11q23.3 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_11q25 cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_13q12.11 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_13q14.2 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_14q32.31 cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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del_15q21.1 cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_16q11.2 cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_16q23.1 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_17p12 cnv correlated to 'CN_CNMF'.
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del_17q25.3 cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_18q21.2 cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_19p13.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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del_19q13.33 cnv correlated to 'METHLYATION_CNMF'.
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del_20p12.1 cnv correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.
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del_21q11.2 cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
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del_22q13.32 cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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del_xp11.3 cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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del_xq21.33 cnv correlated to 'RPPA_CHIERARCHICAL'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
amp 11q22 1 | 47 (16%) | 248 |
0.00032 (0.00305) |
5e-05 (0.000716) |
0.00896 (0.0367) |
1e-05 (0.000233) |
2e-05 (0.00036) |
1e-05 (0.000233) |
0.00071 (0.00532) |
1e-05 (0.000233) |
0.0701 (0.165) |
0.0031 (0.017) |
amp 17q12 | 55 (19%) | 240 |
0.00529 (0.0244) |
0.00357 (0.0186) |
0.682 (0.785) |
0.0377 (0.102) |
0.00372 (0.0192) |
0.00355 (0.0186) |
0.0298 (0.0865) |
0.0326 (0.0915) |
0.019 (0.0624) |
0.044 (0.116) |
del 3p14 2 | 134 (45%) | 161 |
1e-05 (0.000233) |
2e-05 (0.00036) |
0.109 (0.223) |
0.0471 (0.12) |
0.002 (0.0119) |
5e-05 (0.000716) |
0.00982 (0.0389) |
0.00053 (0.00439) |
0.00223 (0.013) |
0.00014 (0.00173) |
del 16q23 1 | 55 (19%) | 240 |
0.013 (0.0477) |
0.0008 (0.00593) |
0.424 (0.57) |
0.186 (0.322) |
0.00046 (0.00392) |
0.00035 (0.00329) |
0.0261 (0.079) |
0.00058 (0.00463) |
0.0496 (0.125) |
0.00319 (0.0173) |
del 19p13 3 | 105 (36%) | 190 |
1e-05 (0.000233) |
1e-05 (0.000233) |
0.521 (0.659) |
0.0853 (0.189) |
0.00023 (0.00241) |
1e-05 (0.000233) |
0.0132 (0.0481) |
2e-05 (0.00036) |
0.0469 (0.12) |
0.048 (0.121) |
amp 3q28 | 224 (76%) | 71 |
1e-05 (0.000233) |
1e-05 (0.000233) |
0.735 (0.82) |
0.856 (0.9) |
0.00184 (0.0111) |
1e-05 (0.000233) |
0.301 (0.45) |
2e-05 (0.00036) |
0.0342 (0.0944) |
0.00019 (0.0021) |
amp 5p15 33 | 138 (47%) | 157 |
1e-05 (0.000233) |
0.0053 (0.0244) |
0.109 (0.223) |
0.372 (0.52) |
0.00391 (0.0196) |
0.00538 (0.0244) |
0.00528 (0.0244) |
0.00101 (0.00692) |
0.191 (0.328) |
0.0153 (0.0526) |
amp 7p11 2 | 52 (18%) | 243 |
0.00015 (0.00182) |
0.00045 (0.00388) |
0.173 (0.31) |
0.00815 (0.034) |
0.0152 (0.0526) |
0.0659 (0.158) |
0.00021 (0.00224) |
0.0895 (0.194) |
0.0274 (0.0815) |
0.0158 (0.0538) |
amp 11q13 3 | 41 (14%) | 254 |
0.00036 (0.00329) |
0.024 (0.0742) |
0.196 (0.333) |
0.0313 (0.0893) |
0.0136 (0.0488) |
7e-05 (0.000919) |
0.0166 (0.0561) |
2e-05 (0.00036) |
0.371 (0.52) |
0.32 (0.471) |
del 2q37 1 | 129 (44%) | 166 |
0.00392 (0.0196) |
0.00044 (0.00385) |
0.32 (0.471) |
0.107 (0.22) |
3e-05 (0.000472) |
1e-05 (0.000233) |
0.0151 (0.0526) |
0.00124 (0.00789) |
0.0876 (0.191) |
1e-05 (0.000233) |
del 13q12 11 | 98 (33%) | 197 |
0.00262 (0.0149) |
0.00082 (0.00601) |
0.33 (0.48) |
0.0925 (0.196) |
0.012 (0.0444) |
0.00027 (0.0027) |
0.00171 (0.0105) |
0.0048 (0.0231) |
0.248 (0.394) |
0.00242 (0.0139) |
del 13q14 2 | 118 (40%) | 177 |
0.00405 (0.0201) |
0.00109 (0.00723) |
0.803 (0.869) |
0.624 (0.74) |
0.00117 (0.0076) |
0.00219 (0.0129) |
0.0145 (0.051) |
0.00056 (0.00452) |
0.0809 (0.183) |
0.00352 (0.0186) |
del 18q21 2 | 82 (28%) | 213 |
0.137 (0.262) |
0.00011 (0.00139) |
0.559 (0.692) |
0.0553 (0.136) |
1e-05 (0.000233) |
2e-05 (0.00036) |
0.0158 (0.0538) |
3e-05 (0.000472) |
0.0384 (0.103) |
0.00269 (0.0151) |
amp 3q26 31 | 227 (77%) | 68 |
1e-05 (0.000233) |
6e-05 (0.000822) |
0.832 (0.889) |
0.886 (0.918) |
0.00042 (0.00373) |
1e-05 (0.000233) |
0.309 (0.459) |
1e-05 (0.000233) |
0.0518 (0.129) |
0.00032 (0.00305) |
del 1p36 23 | 40 (14%) | 255 |
0.00068 (0.00529) |
0.00477 (0.0231) |
0.881 (0.917) |
0.0954 (0.2) |
0.00042 (0.00373) |
2e-05 (0.00036) |
0.172 (0.309) |
0.00021 (0.00224) |
0.126 (0.246) |
0.0237 (0.0741) |
del 8p23 3 | 104 (35%) | 191 |
1e-05 (0.000233) |
0.0302 (0.0873) |
0.186 (0.322) |
0.092 (0.196) |
0.00049 (0.00412) |
0.0256 (0.0787) |
0.0741 (0.172) |
0.0176 (0.0586) |
0.0317 (0.0901) |
0.194 (0.332) |
del 8p23 1 | 97 (33%) | 198 |
4e-05 (6e-04) |
0.0166 (0.0561) |
0.435 (0.578) |
0.0926 (0.196) |
0.00347 (0.0185) |
0.159 (0.292) |
0.023 (0.0724) |
0.0224 (0.0712) |
0.00912 (0.0371) |
0.0823 (0.185) |
del 16q11 2 | 53 (18%) | 242 |
0.2 (0.337) |
0.00199 (0.0119) |
0.168 (0.304) |
0.157 (0.292) |
0.0366 (0.0994) |
0.0105 (0.0412) |
0.0113 (0.0427) |
0.0107 (0.0413) |
0.2 (0.337) |
0.0136 (0.0488) |
del 17q25 3 | 51 (17%) | 244 |
0.333 (0.481) |
0.00016 (0.0019) |
0.457 (0.597) |
0.953 (0.97) |
3e-05 (0.000472) |
0.00101 (0.00692) |
0.00336 (0.0181) |
0.00088 (0.0063) |
0.418 (0.564) |
0.0057 (0.0256) |
amp 1q44 | 152 (52%) | 143 |
1e-05 (0.000233) |
0.251 (0.396) |
0.814 (0.877) |
0.317 (0.469) |
0.00831 (0.0344) |
0.00638 (0.0283) |
0.85 (0.899) |
0.00145 (0.00913) |
0.433 (0.578) |
0.0208 (0.0671) |
amp 20q11 21 | 135 (46%) | 160 |
0.00036 (0.00329) |
0.0259 (0.079) |
0.664 (0.769) |
0.00375 (0.0192) |
0.0632 (0.153) |
0.0364 (0.0993) |
0.182 (0.319) |
0.0354 (0.097) |
0.679 (0.785) |
0.186 (0.322) |
del 11p15 1 | 102 (35%) | 193 |
0.00115 (0.00755) |
0.171 (0.307) |
0.0374 (0.101) |
0.00941 (0.0378) |
0.0286 (0.0846) |
0.0185 (0.0611) |
0.264 (0.409) |
0.0763 (0.175) |
0.987 (0.996) |
0.144 (0.274) |
del 11q23 3 | 162 (55%) | 133 |
1e-05 (0.000233) |
0.148 (0.277) |
0.385 (0.532) |
0.131 (0.253) |
0.0437 (0.115) |
0.00384 (0.0195) |
0.814 (0.877) |
0.00232 (0.0134) |
0.117 (0.235) |
0.00624 (0.0279) |
del 11q25 | 160 (54%) | 135 |
1e-05 (0.000233) |
0.163 (0.297) |
0.63 (0.744) |
0.188 (0.324) |
0.0336 (0.0933) |
0.0051 (0.0242) |
0.533 (0.671) |
0.00534 (0.0244) |
0.0757 (0.175) |
0.00809 (0.034) |
del 14q32 31 | 50 (17%) | 245 |
7e-05 (0.000919) |
0.0701 (0.165) |
0.228 (0.372) |
0.00771 (0.0326) |
0.0134 (0.0486) |
0.00955 (0.0381) |
0.236 (0.381) |
0.0265 (0.0791) |
0.0909 (0.195) |
0.13 (0.251) |
del 15q21 1 | 70 (24%) | 225 |
9e-05 (0.00116) |
0.243 (0.388) |
0.737 (0.82) |
0.552 (0.688) |
0.113 (0.229) |
0.047 (0.12) |
0.0103 (0.0406) |
0.033 (0.0919) |
0.0196 (0.0637) |
0.0508 (0.128) |
del xp11 3 | 72 (24%) | 223 |
0.00071 (0.00532) |
0.00032 (0.00305) |
0.682 (0.785) |
0.654 (0.763) |
0.0925 (0.196) |
0.243 (0.388) |
0.00027 (0.0027) |
0.0321 (0.0906) |
0.00308 (0.017) |
0.159 (0.292) |
amp 1p31 3 | 96 (33%) | 199 |
0.00068 (0.00529) |
0.258 (0.402) |
0.454 (0.595) |
0.712 (0.806) |
0.0304 (0.0876) |
0.00154 (0.00961) |
0.341 (0.491) |
0.0012 (0.00771) |
0.545 (0.684) |
0.288 (0.437) |
amp 1q21 3 | 158 (54%) | 137 |
1e-05 (0.000233) |
0.568 (0.699) |
0.34 (0.49) |
0.246 (0.392) |
0.0479 (0.121) |
0.0107 (0.0413) |
0.989 (0.996) |
0.00098 (0.00692) |
0.793 (0.864) |
0.0555 (0.136) |
amp 2p24 3 | 79 (27%) | 216 |
2e-05 (0.00036) |
0.00646 (0.0285) |
0.308 (0.458) |
0.0532 (0.132) |
0.135 (0.258) |
0.0436 (0.115) |
0.0693 (0.164) |
4e-05 (6e-04) |
0.11 (0.224) |
0.114 (0.229) |
amp 2q33 1 | 41 (14%) | 254 |
6e-05 (0.000822) |
0.0451 (0.117) |
0.203 (0.339) |
0.442 (0.584) |
0.00019 (0.0021) |
0.0553 (0.136) |
0.307 (0.458) |
0.00695 (0.0301) |
0.326 (0.477) |
0.82 (0.881) |
del 1p13 2 | 34 (12%) | 261 |
0.0579 (0.142) |
0.00451 (0.0222) |
0.166 (0.301) |
0.26 (0.404) |
3e-05 (0.000472) |
0.071 (0.166) |
0.0107 (0.0413) |
0.178 (0.316) |
0.636 (0.747) |
0.0262 (0.079) |
del 4q22 1 | 100 (34%) | 195 |
1e-05 (0.000233) |
0.235 (0.38) |
0.773 (0.846) |
0.871 (0.911) |
0.0229 (0.0724) |
0.0113 (0.0427) |
0.633 (0.744) |
0.0444 (0.116) |
0.229 (0.373) |
0.412 (0.561) |
del 5q12 1 | 76 (26%) | 219 |
3e-05 (0.000472) |
0.926 (0.953) |
0.059 (0.144) |
0.0293 (0.0863) |
0.417 (0.564) |
0.94 (0.964) |
0.0209 (0.0673) |
0.345 (0.492) |
0.816 (0.878) |
0.0313 (0.0893) |
amp 6p21 33 | 82 (28%) | 213 |
0.00026 (0.00269) |
0.12 (0.237) |
0.695 (0.792) |
0.0615 (0.15) |
0.0219 (0.0701) |
0.16 (0.292) |
0.724 (0.814) |
0.0145 (0.051) |
0.418 (0.564) |
0.69 (0.792) |
amp 8q24 21 | 127 (43%) | 168 |
0.254 (0.398) |
0.128 (0.248) |
0.289 (0.437) |
0.146 (0.275) |
0.452 (0.594) |
0.0393 (0.104) |
0.0864 (0.19) |
0.0981 (0.202) |
0.0195 (0.0636) |
0.00084 (0.00608) |
amp 9p24 1 | 63 (21%) | 232 |
0.344 (0.492) |
0.141 (0.269) |
0.0153 (0.0526) |
0.0121 (0.0448) |
0.299 (0.45) |
0.0327 (0.0915) |
0.646 (0.755) |
0.0694 (0.164) |
0.118 (0.235) |
0.182 (0.319) |
amp 17q25 1 | 74 (25%) | 221 |
0.001 (0.00692) |
0.0179 (0.0593) |
0.0964 (0.201) |
0.0796 (0.181) |
0.0119 (0.0444) |
0.509 (0.648) |
0.156 (0.291) |
0.943 (0.965) |
0.264 (0.409) |
0.776 (0.847) |
amp 19p13 3 | 39 (13%) | 256 |
0.356 (0.505) |
0.024 (0.0742) |
0.094 (0.197) |
0.588 (0.711) |
0.179 (0.318) |
0.00105 (0.00711) |
0.516 (0.656) |
0.0175 (0.0586) |
0.44 (0.583) |
0.157 (0.291) |
del 4q21 3 | 103 (35%) | 192 |
1e-05 (0.000233) |
0.39 (0.536) |
0.863 (0.904) |
0.802 (0.869) |
0.0114 (0.0427) |
0.00527 (0.0244) |
0.493 (0.63) |
0.233 (0.378) |
0.563 (0.694) |
0.329 (0.479) |
del 4q35 2 | 114 (39%) | 181 |
1e-05 (0.000233) |
0.208 (0.345) |
1 (1.00) |
0.998 (1.00) |
0.0087 (0.0358) |
0.00271 (0.0151) |
0.383 (0.53) |
0.125 (0.245) |
0.416 (0.564) |
0.0865 (0.19) |
del 21q11 2 | 58 (20%) | 237 |
0.00019 (0.0021) |
0.202 (0.338) |
0.414 (0.564) |
0.00493 (0.0235) |
0.0833 (0.187) |
0.00922 (0.0372) |
0.476 (0.612) |
0.233 (0.378) |
0.435 (0.578) |
1 (1.00) |
amp xq28 | 75 (25%) | 220 |
0.625 (0.74) |
0.575 (0.704) |
0.834 (0.889) |
0.908 (0.937) |
0.753 (0.832) |
0.559 (0.692) |
0.00107 (0.00717) |
0.165 (0.301) |
0.0234 (0.0733) |
0.0714 (0.167) |
del 5q35 2 | 71 (24%) | 224 |
0.00019 (0.0021) |
0.961 (0.975) |
0.374 (0.521) |
0.546 (0.684) |
0.846 (0.897) |
0.84 (0.893) |
0.0297 (0.0865) |
0.555 (0.69) |
0.486 (0.622) |
0.126 (0.246) |
del 6p24 2 | 46 (16%) | 249 |
0.286 (0.435) |
0.0875 (0.191) |
0.35 (0.496) |
0.184 (0.321) |
0.118 (0.235) |
0.0388 (0.104) |
0.286 (0.435) |
0.0265 (0.0791) |
0.174 (0.311) |
0.0902 (0.195) |
del 6q26 | 100 (34%) | 195 |
1e-05 (0.000233) |
0.00166 (0.0103) |
0.549 (0.686) |
0.748 (0.828) |
0.273 (0.42) |
0.084 (0.187) |
0.318 (0.47) |
0.321 (0.471) |
0.181 (0.319) |
0.227 (0.371) |
del 10q23 31 | 86 (29%) | 209 |
0.00767 (0.0326) |
0.509 (0.648) |
0.224 (0.368) |
0.763 (0.84) |
0.0466 (0.12) |
0.33 (0.48) |
0.947 (0.967) |
0.24 (0.385) |
0.853 (0.899) |
0.586 (0.71) |
del 20p12 1 | 36 (12%) | 259 |
0.581 (0.71) |
0.026 (0.079) |
0.633 (0.744) |
0.122 (0.241) |
0.00731 (0.0313) |
0.126 (0.246) |
0.0766 (0.176) |
0.144 (0.273) |
0.0911 (0.195) |
0.363 (0.511) |
del 22q13 32 | 88 (30%) | 207 |
0.0048 (0.0231) |
0.46 (0.599) |
0.094 (0.197) |
0.705 (0.8) |
0.349 (0.496) |
0.0294 (0.0863) |
0.974 (0.985) |
0.659 (0.765) |
1 (1.00) |
0.907 (0.937) |
amp 4q12 | 21 (7%) | 274 |
0.88 (0.917) |
0.198 (0.336) |
0.00698 (0.0301) |
0.431 (0.577) |
0.689 (0.792) |
0.891 (0.922) |
1 (1.00) |
0.369 (0.518) |
0.397 (0.543) |
0.11 (0.224) |
amp 13q22 1 | 65 (22%) | 230 |
0.194 (0.332) |
0.00697 (0.0301) |
0.345 (0.492) |
0.519 (0.658) |
0.315 (0.467) |
0.744 (0.825) |
0.757 (0.835) |
0.425 (0.57) |
0.358 (0.506) |
0.64 (0.75) |
amp 13q34 | 69 (23%) | 226 |
0.0343 (0.0944) |
0.0979 (0.202) |
0.42 (0.565) |
0.586 (0.71) |
0.607 (0.726) |
0.616 (0.734) |
0.765 (0.841) |
0.771 (0.846) |
0.583 (0.71) |
0.468 (0.606) |
amp 19q13 13 | 93 (32%) | 202 |
1e-05 (0.000233) |
0.208 (0.345) |
0.956 (0.971) |
0.253 (0.398) |
0.386 (0.533) |
0.436 (0.578) |
0.657 (0.765) |
0.273 (0.42) |
0.881 (0.917) |
0.848 (0.897) |
del 2q22 1 | 65 (22%) | 230 |
0.585 (0.71) |
0.398 (0.544) |
0.726 (0.814) |
0.723 (0.814) |
0.0143 (0.0509) |
0.118 (0.235) |
0.967 (0.979) |
0.181 (0.319) |
0.603 (0.723) |
0.077 (0.176) |
del 7q34 | 60 (20%) | 235 |
0.00069 (0.0053) |
0.274 (0.42) |
0.342 (0.492) |
0.461 (0.599) |
0.829 (0.888) |
0.695 (0.792) |
0.691 (0.792) |
0.469 (0.606) |
0.739 (0.821) |
0.599 (0.72) |
del 17p12 | 109 (37%) | 186 |
0.00056 (0.00452) |
0.084 (0.187) |
0.153 (0.286) |
0.726 (0.814) |
0.145 (0.274) |
0.272 (0.42) |
0.198 (0.336) |
0.202 (0.338) |
0.624 (0.74) |
0.774 (0.846) |
del 19q13 33 | 38 (13%) | 257 |
0.63 (0.744) |
0.047 (0.12) |
0.29 (0.438) |
0.593 (0.715) |
0.145 (0.274) |
0.182 (0.319) |
0.0971 (0.201) |
0.166 (0.301) |
0.0728 (0.169) |
0.159 (0.292) |
del xq21 33 | 60 (20%) | 235 |
0.128 (0.248) |
0.0656 (0.158) |
0.252 (0.397) |
0.0111 (0.0425) |
0.941 (0.964) |
0.731 (0.816) |
0.25 (0.395) |
0.953 (0.97) |
0.0865 (0.19) |
0.703 (0.8) |
amp 11p12 | 23 (8%) | 272 |
0.528 (0.666) |
0.255 (0.398) |
0.728 (0.814) |
0.862 (0.904) |
0.365 (0.513) |
0.301 (0.45) |
0.454 (0.595) |
0.0681 (0.163) |
0.561 (0.693) |
0.707 (0.801) |
amp 15q26 1 | 76 (26%) | 219 |
0.089 (0.193) |
0.377 (0.524) |
0.479 (0.615) |
0.332 (0.48) |
0.714 (0.806) |
0.594 (0.715) |
0.55 (0.686) |
0.605 (0.725) |
0.472 (0.608) |
0.392 (0.538) |
amp 16p13 13 | 65 (22%) | 230 |
0.242 (0.388) |
0.546 (0.684) |
0.841 (0.893) |
0.886 (0.918) |
0.209 (0.346) |
0.379 (0.525) |
0.299 (0.45) |
0.22 (0.363) |
0.616 (0.734) |
0.459 (0.599) |
amp 19p13 2 | 43 (15%) | 252 |
0.794 (0.864) |
0.185 (0.322) |
0.205 (0.342) |
0.585 (0.71) |
0.66 (0.765) |
0.0806 (0.183) |
0.693 (0.792) |
0.0968 (0.201) |
0.927 (0.953) |
0.278 (0.426) |
amp 21q22 13 | 48 (16%) | 247 |
0.223 (0.367) |
0.574 (0.704) |
0.853 (0.899) |
0.801 (0.869) |
0.0629 (0.152) |
0.444 (0.586) |
0.882 (0.917) |
0.834 (0.889) |
0.804 (0.869) |
0.469 (0.606) |
P value = 0.00068 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
AMP PEAK 1(1P31.3) MUTATED | 28 | 26 | 42 |
AMP PEAK 1(1P31.3) WILD-TYPE | 101 | 47 | 51 |
P value = 0.0304 (Fisher's exact test), Q value = 0.088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
AMP PEAK 1(1P31.3) MUTATED | 21 | 41 | 17 | 16 |
AMP PEAK 1(1P31.3) WILD-TYPE | 33 | 59 | 52 | 53 |
P value = 0.00154 (Fisher's exact test), Q value = 0.0096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
AMP PEAK 1(1P31.3) MUTATED | 15 | 74 | 6 |
AMP PEAK 1(1P31.3) WILD-TYPE | 57 | 111 | 29 |
P value = 0.0012 (Fisher's exact test), Q value = 0.0077
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
AMP PEAK 1(1P31.3) MUTATED | 12 | 36 | 32 | 10 | 6 |
AMP PEAK 1(1P31.3) WILD-TYPE | 48 | 59 | 40 | 15 | 37 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
AMP PEAK 2(1Q21.3) MUTATED | 49 | 42 | 67 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 80 | 31 | 26 |
P value = 0.0479 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
AMP PEAK 2(1Q21.3) MUTATED | 29 | 64 | 32 | 31 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 25 | 36 | 37 | 38 |
P value = 0.0107 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
AMP PEAK 2(1Q21.3) MUTATED | 29 | 111 | 16 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 43 | 74 | 19 |
P value = 0.00098 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
AMP PEAK 2(1Q21.3) MUTATED | 23 | 62 | 42 | 16 | 15 |
AMP PEAK 2(1Q21.3) WILD-TYPE | 37 | 33 | 30 | 9 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
AMP PEAK 3(1Q44) MUTATED | 46 | 41 | 65 |
AMP PEAK 3(1Q44) WILD-TYPE | 83 | 32 | 28 |
P value = 0.00831 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
AMP PEAK 3(1Q44) MUTATED | 30 | 63 | 30 | 27 |
AMP PEAK 3(1Q44) WILD-TYPE | 24 | 37 | 39 | 42 |
P value = 0.00638 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
AMP PEAK 3(1Q44) MUTATED | 27 | 108 | 15 |
AMP PEAK 3(1Q44) WILD-TYPE | 45 | 77 | 20 |
P value = 0.00145 (Fisher's exact test), Q value = 0.0091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
AMP PEAK 3(1Q44) MUTATED | 21 | 58 | 43 | 15 | 15 |
AMP PEAK 3(1Q44) WILD-TYPE | 39 | 37 | 29 | 10 | 28 |
P value = 0.0208 (Fisher's exact test), Q value = 0.067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
AMP PEAK 3(1Q44) MUTATED | 24 | 30 | 18 | 72 |
AMP PEAK 3(1Q44) WILD-TYPE | 40 | 20 | 8 | 70 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
AMP PEAK 4(2P24.3) MUTATED | 21 | 35 | 23 |
AMP PEAK 4(2P24.3) WILD-TYPE | 108 | 38 | 70 |
P value = 0.00646 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
AMP PEAK 4(2P24.3) MUTATED | 26 | 14 | 6 | 21 | 3 | 9 |
AMP PEAK 4(2P24.3) WILD-TYPE | 45 | 40 | 51 | 38 | 6 | 36 |
P value = 0.0436 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
AMP PEAK 4(2P24.3) MUTATED | 25 | 41 | 13 |
AMP PEAK 4(2P24.3) WILD-TYPE | 47 | 144 | 22 |
P value = 4e-05 (Fisher's exact test), Q value = 6e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
AMP PEAK 4(2P24.3) MUTATED | 21 | 26 | 6 | 13 | 13 |
AMP PEAK 4(2P24.3) WILD-TYPE | 39 | 69 | 66 | 12 | 30 |
P value = 6e-05 (Fisher's exact test), Q value = 0.00082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
AMP PEAK 5(2Q33.1) MUTATED | 7 | 21 | 13 |
AMP PEAK 5(2Q33.1) WILD-TYPE | 122 | 52 | 80 |
P value = 0.0451 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
AMP PEAK 5(2Q33.1) MUTATED | 14 | 4 | 3 | 13 | 1 | 6 |
AMP PEAK 5(2Q33.1) WILD-TYPE | 57 | 50 | 54 | 46 | 8 | 39 |
P value = 0.00019 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
AMP PEAK 5(2Q33.1) MUTATED | 12 | 3 | 10 | 15 |
AMP PEAK 5(2Q33.1) WILD-TYPE | 42 | 97 | 59 | 54 |
P value = 0.00695 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
AMP PEAK 5(2Q33.1) MUTATED | 12 | 10 | 4 | 3 | 12 |
AMP PEAK 5(2Q33.1) WILD-TYPE | 48 | 85 | 68 | 22 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
AMP PEAK 6(3Q26.31) MUTATED | 77 | 57 | 93 |
AMP PEAK 6(3Q26.31) WILD-TYPE | 52 | 16 | 0 |
P value = 6e-05 (Fisher's exact test), Q value = 0.00082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
AMP PEAK 6(3Q26.31) MUTATED | 45 | 46 | 45 | 39 | 8 | 44 |
AMP PEAK 6(3Q26.31) WILD-TYPE | 26 | 8 | 12 | 20 | 1 | 1 |
P value = 0.00042 (Fisher's exact test), Q value = 0.0037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
AMP PEAK 6(3Q26.31) MUTATED | 45 | 88 | 46 | 45 |
AMP PEAK 6(3Q26.31) WILD-TYPE | 9 | 12 | 23 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
AMP PEAK 6(3Q26.31) MUTATED | 43 | 160 | 21 |
AMP PEAK 6(3Q26.31) WILD-TYPE | 29 | 25 | 14 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
AMP PEAK 6(3Q26.31) MUTATED | 34 | 81 | 65 | 20 | 27 |
AMP PEAK 6(3Q26.31) WILD-TYPE | 26 | 14 | 7 | 5 | 16 |
P value = 0.00032 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
AMP PEAK 6(3Q26.31) MUTATED | 38 | 45 | 24 | 109 |
AMP PEAK 6(3Q26.31) WILD-TYPE | 26 | 5 | 2 | 33 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
AMP PEAK 7(3Q28) MUTATED | 77 | 54 | 93 |
AMP PEAK 7(3Q28) WILD-TYPE | 52 | 19 | 0 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
AMP PEAK 7(3Q28) MUTATED | 43 | 45 | 44 | 39 | 9 | 44 |
AMP PEAK 7(3Q28) WILD-TYPE | 28 | 9 | 13 | 20 | 0 | 1 |
P value = 0.00184 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
AMP PEAK 7(3Q28) MUTATED | 43 | 87 | 45 | 46 |
AMP PEAK 7(3Q28) WILD-TYPE | 11 | 13 | 24 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
AMP PEAK 7(3Q28) MUTATED | 41 | 158 | 22 |
AMP PEAK 7(3Q28) WILD-TYPE | 31 | 27 | 13 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
AMP PEAK 7(3Q28) MUTATED | 33 | 80 | 65 | 19 | 27 |
AMP PEAK 7(3Q28) WILD-TYPE | 27 | 15 | 7 | 6 | 16 |
P value = 0.0342 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 77 | 80 |
AMP PEAK 7(3Q28) MUTATED | 85 | 62 | 66 |
AMP PEAK 7(3Q28) WILD-TYPE | 40 | 15 | 14 |
P value = 0.00019 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
AMP PEAK 7(3Q28) MUTATED | 36 | 44 | 24 | 109 |
AMP PEAK 7(3Q28) WILD-TYPE | 28 | 6 | 2 | 33 |
P value = 0.00698 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 42 | 69 |
AMP PEAK 8(4Q12) MUTATED | 3 | 0 | 11 |
AMP PEAK 8(4Q12) WILD-TYPE | 50 | 42 | 58 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
AMP PEAK 9(5P15.33) MUTATED | 34 | 60 | 44 |
AMP PEAK 9(5P15.33) WILD-TYPE | 95 | 13 | 49 |
P value = 0.0053 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
AMP PEAK 9(5P15.33) MUTATED | 24 | 27 | 27 | 39 | 5 | 16 |
AMP PEAK 9(5P15.33) WILD-TYPE | 47 | 27 | 30 | 20 | 4 | 29 |
P value = 0.00391 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
AMP PEAK 9(5P15.33) MUTATED | 21 | 49 | 23 | 43 |
AMP PEAK 9(5P15.33) WILD-TYPE | 33 | 51 | 46 | 26 |
P value = 0.00538 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
AMP PEAK 9(5P15.33) MUTATED | 24 | 89 | 23 |
AMP PEAK 9(5P15.33) WILD-TYPE | 48 | 96 | 12 |
P value = 0.00528 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
AMP PEAK 9(5P15.33) MUTATED | 41 | 28 | 69 |
AMP PEAK 9(5P15.33) WILD-TYPE | 58 | 49 | 50 |
P value = 0.00101 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
AMP PEAK 9(5P15.33) MUTATED | 17 | 50 | 28 | 16 | 27 |
AMP PEAK 9(5P15.33) WILD-TYPE | 43 | 45 | 44 | 9 | 16 |
P value = 0.0153 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
AMP PEAK 9(5P15.33) MUTATED | 21 | 23 | 9 | 78 |
AMP PEAK 9(5P15.33) WILD-TYPE | 43 | 27 | 17 | 64 |
P value = 0.00026 (Fisher's exact test), Q value = 0.0027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
AMP PEAK 10(6P21.33) MUTATED | 26 | 34 | 22 |
AMP PEAK 10(6P21.33) WILD-TYPE | 103 | 39 | 71 |
P value = 0.0219 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
AMP PEAK 10(6P21.33) MUTATED | 16 | 18 | 21 | 27 |
AMP PEAK 10(6P21.33) WILD-TYPE | 38 | 82 | 48 | 42 |
P value = 0.0145 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
AMP PEAK 10(6P21.33) MUTATED | 17 | 21 | 15 | 8 | 21 |
AMP PEAK 10(6P21.33) WILD-TYPE | 43 | 74 | 57 | 17 | 22 |
P value = 0.00015 (Fisher's exact test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
AMP PEAK 11(7P11.2) MUTATED | 13 | 25 | 14 |
AMP PEAK 11(7P11.2) WILD-TYPE | 116 | 48 | 79 |
P value = 0.00045 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
AMP PEAK 11(7P11.2) MUTATED | 5 | 14 | 11 | 18 | 2 | 2 |
AMP PEAK 11(7P11.2) WILD-TYPE | 66 | 40 | 46 | 41 | 7 | 43 |
P value = 0.00815 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
AMP PEAK 11(7P11.2) MUTATED | 5 | 4 | 7 | 10 | 1 |
AMP PEAK 11(7P11.2) WILD-TYPE | 27 | 43 | 38 | 13 | 16 |
P value = 0.0152 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
AMP PEAK 11(7P11.2) MUTATED | 7 | 17 | 7 | 21 |
AMP PEAK 11(7P11.2) WILD-TYPE | 47 | 83 | 62 | 48 |
P value = 0.00021 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
AMP PEAK 11(7P11.2) MUTATED | 12 | 6 | 34 |
AMP PEAK 11(7P11.2) WILD-TYPE | 87 | 71 | 85 |
P value = 0.0274 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 77 | 80 |
AMP PEAK 11(7P11.2) MUTATED | 22 | 7 | 20 |
AMP PEAK 11(7P11.2) WILD-TYPE | 103 | 70 | 60 |
P value = 0.0158 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
AMP PEAK 11(7P11.2) MUTATED | 6 | 4 | 5 | 34 |
AMP PEAK 11(7P11.2) WILD-TYPE | 58 | 46 | 21 | 108 |
P value = 0.0393 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
AMP PEAK 12(8Q24.21) MUTATED | 23 | 90 | 13 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 49 | 95 | 22 |
P value = 0.0195 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 77 | 80 |
AMP PEAK 12(8Q24.21) MUTATED | 61 | 23 | 38 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 64 | 54 | 42 |
P value = 0.00084 (Fisher's exact test), Q value = 0.0061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
AMP PEAK 12(8Q24.21) MUTATED | 17 | 16 | 15 | 74 |
AMP PEAK 12(8Q24.21) WILD-TYPE | 47 | 34 | 11 | 68 |
P value = 0.0153 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 42 | 69 |
AMP PEAK 13(9P24.1) MUTATED | 5 | 9 | 21 |
AMP PEAK 13(9P24.1) WILD-TYPE | 48 | 33 | 48 |
P value = 0.0121 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
AMP PEAK 13(9P24.1) MUTATED | 3 | 12 | 15 | 5 | 0 |
AMP PEAK 13(9P24.1) WILD-TYPE | 29 | 35 | 30 | 18 | 17 |
P value = 0.0327 (Fisher's exact test), Q value = 0.092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
AMP PEAK 13(9P24.1) MUTATED | 9 | 42 | 12 |
AMP PEAK 13(9P24.1) WILD-TYPE | 63 | 143 | 23 |
P value = 0.00036 (Fisher's exact test), Q value = 0.0033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
AMP PEAK 15(11Q13.3) MUTATED | 11 | 21 | 9 |
AMP PEAK 15(11Q13.3) WILD-TYPE | 118 | 52 | 84 |
P value = 0.024 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
AMP PEAK 15(11Q13.3) MUTATED | 7 | 11 | 4 | 15 | 0 | 4 |
AMP PEAK 15(11Q13.3) WILD-TYPE | 64 | 43 | 53 | 44 | 9 | 41 |
P value = 0.0313 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
AMP PEAK 15(11Q13.3) MUTATED | 6 | 5 | 6 | 8 | 0 |
AMP PEAK 15(11Q13.3) WILD-TYPE | 26 | 42 | 39 | 15 | 17 |
P value = 0.0136 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
AMP PEAK 15(11Q13.3) MUTATED | 6 | 10 | 6 | 18 |
AMP PEAK 15(11Q13.3) WILD-TYPE | 48 | 90 | 63 | 51 |
P value = 7e-05 (Fisher's exact test), Q value = 0.00092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
AMP PEAK 15(11Q13.3) MUTATED | 6 | 20 | 14 |
AMP PEAK 15(11Q13.3) WILD-TYPE | 66 | 165 | 21 |
P value = 0.0166 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
AMP PEAK 15(11Q13.3) MUTATED | 10 | 6 | 25 |
AMP PEAK 15(11Q13.3) WILD-TYPE | 89 | 71 | 94 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
AMP PEAK 15(11Q13.3) MUTATED | 3 | 10 | 5 | 6 | 17 |
AMP PEAK 15(11Q13.3) WILD-TYPE | 57 | 85 | 67 | 19 | 26 |
P value = 0.00032 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
AMP PEAK 16(11Q22.1) MUTATED | 15 | 23 | 9 |
AMP PEAK 16(11Q22.1) WILD-TYPE | 114 | 50 | 84 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
AMP PEAK 16(11Q22.1) MUTATED | 5 | 5 | 9 | 23 | 1 | 4 |
AMP PEAK 16(11Q22.1) WILD-TYPE | 66 | 49 | 48 | 36 | 8 | 41 |
P value = 0.00896 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 42 | 69 |
AMP PEAK 16(11Q22.1) MUTATED | 17 | 4 | 9 |
AMP PEAK 16(11Q22.1) WILD-TYPE | 36 | 38 | 60 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
AMP PEAK 16(11Q22.1) MUTATED | 9 | 5 | 3 | 13 | 0 |
AMP PEAK 16(11Q22.1) WILD-TYPE | 23 | 42 | 42 | 10 | 17 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
AMP PEAK 16(11Q22.1) MUTATED | 4 | 9 | 7 | 26 |
AMP PEAK 16(11Q22.1) WILD-TYPE | 50 | 91 | 62 | 43 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
AMP PEAK 16(11Q22.1) MUTATED | 4 | 22 | 20 |
AMP PEAK 16(11Q22.1) WILD-TYPE | 68 | 163 | 15 |
P value = 0.00071 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
AMP PEAK 16(11Q22.1) MUTATED | 8 | 8 | 31 |
AMP PEAK 16(11Q22.1) WILD-TYPE | 91 | 69 | 88 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
AMP PEAK 16(11Q22.1) MUTATED | 2 | 8 | 11 | 3 | 23 |
AMP PEAK 16(11Q22.1) WILD-TYPE | 58 | 87 | 61 | 22 | 20 |
P value = 0.0031 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
AMP PEAK 16(11Q22.1) MUTATED | 3 | 5 | 7 | 30 |
AMP PEAK 16(11Q22.1) WILD-TYPE | 61 | 45 | 19 | 112 |
P value = 0.00697 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
AMP PEAK 17(13Q22.1) MUTATED | 14 | 18 | 10 | 19 | 1 | 3 |
AMP PEAK 17(13Q22.1) WILD-TYPE | 57 | 36 | 47 | 40 | 8 | 42 |
P value = 0.0343 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
AMP PEAK 18(13Q34) MUTATED | 23 | 25 | 21 |
AMP PEAK 18(13Q34) WILD-TYPE | 106 | 48 | 72 |
P value = 0.00529 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
AMP PEAK 21(17Q12) MUTATED | 15 | 22 | 18 |
AMP PEAK 21(17Q12) WILD-TYPE | 114 | 51 | 75 |
P value = 0.00357 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
AMP PEAK 21(17Q12) MUTATED | 22 | 8 | 9 | 4 | 4 | 8 |
AMP PEAK 21(17Q12) WILD-TYPE | 49 | 46 | 48 | 55 | 5 | 37 |
P value = 0.0377 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
AMP PEAK 21(17Q12) MUTATED | 2 | 11 | 12 | 2 | 6 |
AMP PEAK 21(17Q12) WILD-TYPE | 30 | 36 | 33 | 21 | 11 |
P value = 0.00372 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
AMP PEAK 21(17Q12) MUTATED | 10 | 13 | 23 | 8 |
AMP PEAK 21(17Q12) WILD-TYPE | 44 | 87 | 46 | 61 |
P value = 0.00355 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
AMP PEAK 21(17Q12) MUTATED | 23 | 28 | 3 |
AMP PEAK 21(17Q12) WILD-TYPE | 49 | 157 | 32 |
P value = 0.0298 (Fisher's exact test), Q value = 0.087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
AMP PEAK 21(17Q12) MUTATED | 25 | 16 | 14 |
AMP PEAK 21(17Q12) WILD-TYPE | 74 | 61 | 105 |
P value = 0.0326 (Fisher's exact test), Q value = 0.092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
AMP PEAK 21(17Q12) MUTATED | 20 | 17 | 9 | 3 | 6 |
AMP PEAK 21(17Q12) WILD-TYPE | 40 | 78 | 63 | 22 | 37 |
P value = 0.019 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 77 | 80 |
AMP PEAK 21(17Q12) MUTATED | 32 | 14 | 8 |
AMP PEAK 21(17Q12) WILD-TYPE | 93 | 63 | 72 |
P value = 0.044 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
AMP PEAK 21(17Q12) MUTATED | 20 | 9 | 5 | 20 |
AMP PEAK 21(17Q12) WILD-TYPE | 44 | 41 | 21 | 122 |
P value = 0.001 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
AMP PEAK 22(17Q25.1) MUTATED | 19 | 26 | 29 |
AMP PEAK 22(17Q25.1) WILD-TYPE | 110 | 47 | 64 |
P value = 0.0179 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
AMP PEAK 22(17Q25.1) MUTATED | 22 | 13 | 8 | 12 | 6 | 13 |
AMP PEAK 22(17Q25.1) WILD-TYPE | 49 | 41 | 49 | 47 | 3 | 32 |
P value = 0.0119 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
AMP PEAK 22(17Q25.1) MUTATED | 21 | 16 | 20 | 15 |
AMP PEAK 22(17Q25.1) WILD-TYPE | 33 | 84 | 49 | 54 |
P value = 0.024 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
AMP PEAK 23(19P13.3) MUTATED | 5 | 10 | 9 | 3 | 1 | 11 |
AMP PEAK 23(19P13.3) WILD-TYPE | 66 | 44 | 48 | 56 | 8 | 34 |
P value = 0.00105 (Fisher's exact test), Q value = 0.0071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
AMP PEAK 23(19P13.3) MUTATED | 5 | 34 | 0 |
AMP PEAK 23(19P13.3) WILD-TYPE | 67 | 151 | 35 |
P value = 0.0175 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
AMP PEAK 23(19P13.3) MUTATED | 5 | 12 | 18 | 1 | 3 |
AMP PEAK 23(19P13.3) WILD-TYPE | 55 | 83 | 54 | 24 | 40 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
AMP PEAK 25(19Q13.13) MUTATED | 21 | 46 | 26 |
AMP PEAK 25(19Q13.13) WILD-TYPE | 108 | 27 | 67 |
P value = 0.00036 (Fisher's exact test), Q value = 0.0033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
AMP PEAK 26(20Q11.21) MUTATED | 43 | 44 | 48 |
AMP PEAK 26(20Q11.21) WILD-TYPE | 86 | 29 | 45 |
P value = 0.0259 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
AMP PEAK 26(20Q11.21) MUTATED | 40 | 30 | 20 | 19 | 5 | 21 |
AMP PEAK 26(20Q11.21) WILD-TYPE | 31 | 24 | 37 | 40 | 4 | 24 |
P value = 0.00375 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
AMP PEAK 26(20Q11.21) MUTATED | 13 | 17 | 22 | 9 | 15 |
AMP PEAK 26(20Q11.21) WILD-TYPE | 19 | 30 | 23 | 14 | 2 |
P value = 0.0364 (Fisher's exact test), Q value = 0.099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
AMP PEAK 26(20Q11.21) MUTATED | 42 | 81 | 12 |
AMP PEAK 26(20Q11.21) WILD-TYPE | 30 | 104 | 23 |
P value = 0.0354 (Fisher's exact test), Q value = 0.097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
AMP PEAK 26(20Q11.21) MUTATED | 35 | 37 | 31 | 16 | 16 |
AMP PEAK 26(20Q11.21) WILD-TYPE | 25 | 58 | 41 | 9 | 27 |
P value = 0.00107 (Fisher's exact test), Q value = 0.0072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
AMP PEAK 28(XQ28) MUTATED | 29 | 8 | 38 |
AMP PEAK 28(XQ28) WILD-TYPE | 70 | 69 | 81 |
P value = 0.0234 (Fisher's exact test), Q value = 0.073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 77 | 80 |
AMP PEAK 28(XQ28) MUTATED | 33 | 11 | 26 |
AMP PEAK 28(XQ28) WILD-TYPE | 92 | 66 | 54 |
P value = 0.00068 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 1(1P36.23) MUTATED | 10 | 20 | 10 |
DEL PEAK 1(1P36.23) WILD-TYPE | 119 | 53 | 83 |
P value = 0.00477 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
DEL PEAK 1(1P36.23) MUTATED | 17 | 5 | 2 | 12 | 1 | 3 |
DEL PEAK 1(1P36.23) WILD-TYPE | 54 | 49 | 55 | 47 | 8 | 42 |
P value = 0.00042 (Fisher's exact test), Q value = 0.0037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 1(1P36.23) MUTATED | 10 | 3 | 14 | 13 |
DEL PEAK 1(1P36.23) WILD-TYPE | 44 | 97 | 55 | 56 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
DEL PEAK 1(1P36.23) MUTATED | 18 | 12 | 10 |
DEL PEAK 1(1P36.23) WILD-TYPE | 54 | 173 | 25 |
P value = 0.00021 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
DEL PEAK 1(1P36.23) MUTATED | 16 | 11 | 1 | 5 | 7 |
DEL PEAK 1(1P36.23) WILD-TYPE | 44 | 84 | 71 | 20 | 36 |
P value = 0.0237 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
DEL PEAK 1(1P36.23) MUTATED | 16 | 3 | 2 | 18 |
DEL PEAK 1(1P36.23) WILD-TYPE | 48 | 47 | 24 | 124 |
P value = 0.00451 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
DEL PEAK 2(1P13.2) MUTATED | 4 | 5 | 3 | 16 | 1 | 5 |
DEL PEAK 2(1P13.2) WILD-TYPE | 67 | 49 | 54 | 43 | 8 | 40 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 2(1P13.2) MUTATED | 7 | 5 | 3 | 19 |
DEL PEAK 2(1P13.2) WILD-TYPE | 47 | 95 | 66 | 50 |
P value = 0.0107 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
DEL PEAK 2(1P13.2) MUTATED | 6 | 6 | 22 |
DEL PEAK 2(1P13.2) WILD-TYPE | 93 | 71 | 97 |
P value = 0.0262 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
DEL PEAK 2(1P13.2) MUTATED | 3 | 5 | 1 | 25 |
DEL PEAK 2(1P13.2) WILD-TYPE | 61 | 45 | 25 | 117 |
P value = 0.0143 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 3(2Q22.1) MUTATED | 7 | 29 | 9 | 20 |
DEL PEAK 3(2Q22.1) WILD-TYPE | 47 | 71 | 60 | 49 |
P value = 0.00392 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 4(2Q37.1) MUTATED | 47 | 44 | 38 |
DEL PEAK 4(2Q37.1) WILD-TYPE | 82 | 29 | 55 |
P value = 0.00044 (Fisher's exact test), Q value = 0.0038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
DEL PEAK 4(2Q37.1) MUTATED | 16 | 26 | 27 | 36 | 3 | 21 |
DEL PEAK 4(2Q37.1) WILD-TYPE | 55 | 28 | 30 | 23 | 6 | 24 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 4(2Q37.1) MUTATED | 13 | 52 | 21 | 42 |
DEL PEAK 4(2Q37.1) WILD-TYPE | 41 | 48 | 48 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
DEL PEAK 4(2Q37.1) MUTATED | 14 | 93 | 21 |
DEL PEAK 4(2Q37.1) WILD-TYPE | 58 | 92 | 14 |
P value = 0.0151 (Fisher's exact test), Q value = 0.053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
DEL PEAK 4(2Q37.1) MUTATED | 35 | 30 | 64 |
DEL PEAK 4(2Q37.1) WILD-TYPE | 64 | 47 | 55 |
P value = 0.00124 (Fisher's exact test), Q value = 0.0079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
DEL PEAK 4(2Q37.1) MUTATED | 13 | 48 | 32 | 11 | 25 |
DEL PEAK 4(2Q37.1) WILD-TYPE | 47 | 47 | 40 | 14 | 18 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
DEL PEAK 4(2Q37.1) MUTATED | 13 | 20 | 9 | 81 |
DEL PEAK 4(2Q37.1) WILD-TYPE | 51 | 30 | 17 | 61 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 5(3P14.2) MUTATED | 40 | 47 | 47 |
DEL PEAK 5(3P14.2) WILD-TYPE | 89 | 26 | 46 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
DEL PEAK 5(3P14.2) MUTATED | 18 | 32 | 19 | 35 | 7 | 23 |
DEL PEAK 5(3P14.2) WILD-TYPE | 53 | 22 | 38 | 24 | 2 | 22 |
P value = 0.0471 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
DEL PEAK 5(3P14.2) MUTATED | 11 | 12 | 24 | 12 | 8 |
DEL PEAK 5(3P14.2) WILD-TYPE | 21 | 35 | 21 | 11 | 9 |
P value = 0.002 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 5(3P14.2) MUTATED | 30 | 47 | 18 | 37 |
DEL PEAK 5(3P14.2) WILD-TYPE | 24 | 53 | 51 | 32 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
DEL PEAK 5(3P14.2) MUTATED | 17 | 102 | 13 |
DEL PEAK 5(3P14.2) WILD-TYPE | 55 | 83 | 22 |
P value = 0.00982 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
DEL PEAK 5(3P14.2) MUTATED | 33 | 37 | 64 |
DEL PEAK 5(3P14.2) WILD-TYPE | 66 | 40 | 55 |
P value = 0.00053 (Fisher's exact test), Q value = 0.0044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
DEL PEAK 5(3P14.2) MUTATED | 13 | 54 | 34 | 13 | 20 |
DEL PEAK 5(3P14.2) WILD-TYPE | 47 | 41 | 38 | 12 | 23 |
P value = 0.00223 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 77 | 80 |
DEL PEAK 5(3P14.2) MUTATED | 44 | 35 | 48 |
DEL PEAK 5(3P14.2) WILD-TYPE | 81 | 42 | 32 |
P value = 0.00014 (Fisher's exact test), Q value = 0.0017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
DEL PEAK 5(3P14.2) MUTATED | 14 | 30 | 14 | 69 |
DEL PEAK 5(3P14.2) WILD-TYPE | 50 | 20 | 12 | 73 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 6(4Q21.3) MUTATED | 21 | 48 | 34 |
DEL PEAK 6(4Q21.3) WILD-TYPE | 108 | 25 | 59 |
P value = 0.0114 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 6(4Q21.3) MUTATED | 22 | 30 | 17 | 34 |
DEL PEAK 6(4Q21.3) WILD-TYPE | 32 | 70 | 52 | 35 |
P value = 0.00527 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
DEL PEAK 6(4Q21.3) MUTATED | 21 | 61 | 21 |
DEL PEAK 6(4Q21.3) WILD-TYPE | 51 | 124 | 14 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 7(4Q22.1) MUTATED | 17 | 51 | 32 |
DEL PEAK 7(4Q22.1) WILD-TYPE | 112 | 22 | 61 |
P value = 0.0229 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 7(4Q22.1) MUTATED | 22 | 29 | 17 | 32 |
DEL PEAK 7(4Q22.1) WILD-TYPE | 32 | 71 | 52 | 37 |
P value = 0.0113 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
DEL PEAK 7(4Q22.1) MUTATED | 21 | 59 | 20 |
DEL PEAK 7(4Q22.1) WILD-TYPE | 51 | 126 | 15 |
P value = 0.0444 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
DEL PEAK 7(4Q22.1) MUTATED | 16 | 33 | 22 | 6 | 23 |
DEL PEAK 7(4Q22.1) WILD-TYPE | 44 | 62 | 50 | 19 | 20 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 8(4Q35.2) MUTATED | 25 | 52 | 37 |
DEL PEAK 8(4Q35.2) WILD-TYPE | 104 | 21 | 56 |
P value = 0.0087 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 8(4Q35.2) MUTATED | 26 | 31 | 21 | 36 |
DEL PEAK 8(4Q35.2) WILD-TYPE | 28 | 69 | 48 | 33 |
P value = 0.00271 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
DEL PEAK 8(4Q35.2) MUTATED | 24 | 67 | 23 |
DEL PEAK 8(4Q35.2) WILD-TYPE | 48 | 118 | 12 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 9(5Q12.1) MUTATED | 19 | 33 | 24 |
DEL PEAK 9(5Q12.1) WILD-TYPE | 110 | 40 | 69 |
P value = 0.0293 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
DEL PEAK 9(5Q12.1) MUTATED | 12 | 6 | 12 | 10 | 6 |
DEL PEAK 9(5Q12.1) WILD-TYPE | 20 | 41 | 33 | 13 | 11 |
P value = 0.0209 (Fisher's exact test), Q value = 0.067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
DEL PEAK 9(5Q12.1) MUTATED | 19 | 16 | 41 |
DEL PEAK 9(5Q12.1) WILD-TYPE | 80 | 61 | 78 |
P value = 0.0313 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
DEL PEAK 9(5Q12.1) MUTATED | 14 | 15 | 13 | 32 |
DEL PEAK 9(5Q12.1) WILD-TYPE | 50 | 35 | 13 | 110 |
P value = 0.00019 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 10(5Q35.2) MUTATED | 19 | 30 | 22 |
DEL PEAK 10(5Q35.2) WILD-TYPE | 110 | 43 | 71 |
P value = 0.0297 (Fisher's exact test), Q value = 0.087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
DEL PEAK 10(5Q35.2) MUTATED | 17 | 16 | 38 |
DEL PEAK 10(5Q35.2) WILD-TYPE | 82 | 61 | 81 |
P value = 0.0388 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
DEL PEAK 11(6P24.2) MUTATED | 5 | 36 | 5 |
DEL PEAK 11(6P24.2) WILD-TYPE | 67 | 149 | 30 |
P value = 0.0265 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
DEL PEAK 11(6P24.2) MUTATED | 4 | 22 | 12 | 5 | 3 |
DEL PEAK 11(6P24.2) WILD-TYPE | 56 | 73 | 60 | 20 | 40 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 12(6Q26) MUTATED | 39 | 43 | 18 |
DEL PEAK 12(6Q26) WILD-TYPE | 90 | 30 | 75 |
P value = 0.00166 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
DEL PEAK 12(6Q26) MUTATED | 18 | 27 | 16 | 27 | 4 | 8 |
DEL PEAK 12(6Q26) WILD-TYPE | 53 | 27 | 41 | 32 | 5 | 37 |
P value = 0.00069 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 13(7Q34) MUTATED | 14 | 23 | 23 |
DEL PEAK 13(7Q34) WILD-TYPE | 115 | 50 | 70 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 14(8P23.3) MUTATED | 28 | 42 | 34 |
DEL PEAK 14(8P23.3) WILD-TYPE | 101 | 31 | 59 |
P value = 0.0302 (Fisher's exact test), Q value = 0.087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
DEL PEAK 14(8P23.3) MUTATED | 27 | 15 | 12 | 29 | 4 | 17 |
DEL PEAK 14(8P23.3) WILD-TYPE | 44 | 39 | 45 | 30 | 5 | 28 |
P value = 0.00049 (Fisher's exact test), Q value = 0.0041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 14(8P23.3) MUTATED | 23 | 22 | 23 | 36 |
DEL PEAK 14(8P23.3) WILD-TYPE | 31 | 78 | 46 | 33 |
P value = 0.0256 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
DEL PEAK 14(8P23.3) MUTATED | 28 | 57 | 19 |
DEL PEAK 14(8P23.3) WILD-TYPE | 44 | 128 | 16 |
P value = 0.0176 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
DEL PEAK 14(8P23.3) MUTATED | 24 | 26 | 20 | 11 | 23 |
DEL PEAK 14(8P23.3) WILD-TYPE | 36 | 69 | 52 | 14 | 20 |
P value = 0.0317 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 77 | 80 |
DEL PEAK 14(8P23.3) MUTATED | 48 | 19 | 35 |
DEL PEAK 14(8P23.3) WILD-TYPE | 77 | 58 | 45 |
P value = 4e-05 (Fisher's exact test), Q value = 6e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 15(8P23.1) MUTATED | 28 | 39 | 30 |
DEL PEAK 15(8P23.1) WILD-TYPE | 101 | 34 | 63 |
P value = 0.0166 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
DEL PEAK 15(8P23.1) MUTATED | 25 | 14 | 10 | 26 | 5 | 17 |
DEL PEAK 15(8P23.1) WILD-TYPE | 46 | 40 | 47 | 33 | 4 | 28 |
P value = 0.00347 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 15(8P23.1) MUTATED | 22 | 21 | 22 | 32 |
DEL PEAK 15(8P23.1) WILD-TYPE | 32 | 79 | 47 | 37 |
P value = 0.023 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
DEL PEAK 15(8P23.1) MUTATED | 35 | 16 | 46 |
DEL PEAK 15(8P23.1) WILD-TYPE | 64 | 61 | 73 |
P value = 0.0224 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
DEL PEAK 15(8P23.1) MUTATED | 22 | 26 | 17 | 10 | 22 |
DEL PEAK 15(8P23.1) WILD-TYPE | 38 | 69 | 55 | 15 | 21 |
P value = 0.00912 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 77 | 80 |
DEL PEAK 15(8P23.1) MUTATED | 43 | 17 | 36 |
DEL PEAK 15(8P23.1) WILD-TYPE | 82 | 60 | 44 |
P value = 0.00767 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 16(10Q23.31) MUTATED | 30 | 32 | 24 |
DEL PEAK 16(10Q23.31) WILD-TYPE | 99 | 41 | 69 |
P value = 0.0466 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 16(10Q23.31) MUTATED | 24 | 23 | 18 | 21 |
DEL PEAK 16(10Q23.31) WILD-TYPE | 30 | 77 | 51 | 48 |
P value = 0.00115 (Fisher's exact test), Q value = 0.0075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 17(11P15.1) MUTATED | 30 | 34 | 38 |
DEL PEAK 17(11P15.1) WILD-TYPE | 99 | 39 | 55 |
P value = 0.0374 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 53 | 42 | 69 |
DEL PEAK 17(11P15.1) MUTATED | 11 | 19 | 20 |
DEL PEAK 17(11P15.1) WILD-TYPE | 42 | 23 | 49 |
P value = 0.00941 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
DEL PEAK 17(11P15.1) MUTATED | 5 | 9 | 19 | 8 | 9 |
DEL PEAK 17(11P15.1) WILD-TYPE | 27 | 38 | 26 | 15 | 8 |
P value = 0.0286 (Fisher's exact test), Q value = 0.085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 17(11P15.1) MUTATED | 21 | 40 | 14 | 27 |
DEL PEAK 17(11P15.1) WILD-TYPE | 33 | 60 | 55 | 42 |
P value = 0.0185 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
DEL PEAK 17(11P15.1) MUTATED | 16 | 75 | 11 |
DEL PEAK 17(11P15.1) WILD-TYPE | 56 | 110 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 18(11Q23.3) MUTATED | 49 | 42 | 71 |
DEL PEAK 18(11Q23.3) WILD-TYPE | 80 | 31 | 22 |
P value = 0.0437 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 18(11Q23.3) MUTATED | 34 | 60 | 28 | 37 |
DEL PEAK 18(11Q23.3) WILD-TYPE | 20 | 40 | 41 | 32 |
P value = 0.00384 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
DEL PEAK 18(11Q23.3) MUTATED | 27 | 112 | 20 |
DEL PEAK 18(11Q23.3) WILD-TYPE | 45 | 73 | 15 |
P value = 0.00232 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
DEL PEAK 18(11Q23.3) MUTATED | 21 | 63 | 43 | 11 | 24 |
DEL PEAK 18(11Q23.3) WILD-TYPE | 39 | 32 | 29 | 14 | 19 |
P value = 0.00624 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
DEL PEAK 18(11Q23.3) MUTATED | 25 | 29 | 20 | 82 |
DEL PEAK 18(11Q23.3) WILD-TYPE | 39 | 21 | 6 | 60 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 19(11Q25) MUTATED | 45 | 45 | 70 |
DEL PEAK 19(11Q25) WILD-TYPE | 84 | 28 | 23 |
P value = 0.0336 (Fisher's exact test), Q value = 0.093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 19(11Q25) MUTATED | 32 | 61 | 27 | 38 |
DEL PEAK 19(11Q25) WILD-TYPE | 22 | 39 | 42 | 31 |
P value = 0.0051 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
DEL PEAK 19(11Q25) MUTATED | 27 | 110 | 21 |
DEL PEAK 19(11Q25) WILD-TYPE | 45 | 75 | 14 |
P value = 0.00534 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
DEL PEAK 19(11Q25) MUTATED | 21 | 61 | 42 | 11 | 25 |
DEL PEAK 19(11Q25) WILD-TYPE | 39 | 34 | 30 | 14 | 18 |
P value = 0.00809 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
DEL PEAK 19(11Q25) MUTATED | 25 | 28 | 20 | 80 |
DEL PEAK 19(11Q25) WILD-TYPE | 39 | 22 | 6 | 62 |
P value = 0.00262 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 20(13Q12.11) MUTATED | 31 | 35 | 32 |
DEL PEAK 20(13Q12.11) WILD-TYPE | 98 | 38 | 61 |
P value = 0.00082 (Fisher's exact test), Q value = 0.006
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
DEL PEAK 20(13Q12.11) MUTATED | 11 | 22 | 20 | 28 | 5 | 12 |
DEL PEAK 20(13Q12.11) WILD-TYPE | 60 | 32 | 37 | 31 | 4 | 33 |
P value = 0.012 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 20(13Q12.11) MUTATED | 16 | 32 | 15 | 33 |
DEL PEAK 20(13Q12.11) WILD-TYPE | 38 | 68 | 54 | 36 |
P value = 0.00027 (Fisher's exact test), Q value = 0.0027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
DEL PEAK 20(13Q12.11) MUTATED | 11 | 68 | 17 |
DEL PEAK 20(13Q12.11) WILD-TYPE | 61 | 117 | 18 |
P value = 0.00171 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
DEL PEAK 20(13Q12.11) MUTATED | 21 | 25 | 52 |
DEL PEAK 20(13Q12.11) WILD-TYPE | 78 | 52 | 67 |
P value = 0.0048 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
DEL PEAK 20(13Q12.11) MUTATED | 9 | 33 | 25 | 11 | 20 |
DEL PEAK 20(13Q12.11) WILD-TYPE | 51 | 62 | 47 | 14 | 23 |
P value = 0.00242 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
DEL PEAK 20(13Q12.11) MUTATED | 9 | 18 | 10 | 55 |
DEL PEAK 20(13Q12.11) WILD-TYPE | 55 | 32 | 16 | 87 |
P value = 0.00405 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 21(13Q14.2) MUTATED | 39 | 39 | 40 |
DEL PEAK 21(13Q14.2) WILD-TYPE | 90 | 34 | 53 |
P value = 0.00109 (Fisher's exact test), Q value = 0.0072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
DEL PEAK 21(13Q14.2) MUTATED | 16 | 26 | 24 | 30 | 7 | 15 |
DEL PEAK 21(13Q14.2) WILD-TYPE | 55 | 28 | 33 | 29 | 2 | 30 |
P value = 0.00117 (Fisher's exact test), Q value = 0.0076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 21(13Q14.2) MUTATED | 27 | 38 | 15 | 35 |
DEL PEAK 21(13Q14.2) WILD-TYPE | 27 | 62 | 54 | 34 |
P value = 0.00219 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
DEL PEAK 21(13Q14.2) MUTATED | 16 | 83 | 16 |
DEL PEAK 21(13Q14.2) WILD-TYPE | 56 | 102 | 19 |
P value = 0.0145 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
DEL PEAK 21(13Q14.2) MUTATED | 30 | 29 | 59 |
DEL PEAK 21(13Q14.2) WILD-TYPE | 69 | 48 | 60 |
P value = 0.00056 (Fisher's exact test), Q value = 0.0045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
DEL PEAK 21(13Q14.2) MUTATED | 11 | 43 | 27 | 13 | 24 |
DEL PEAK 21(13Q14.2) WILD-TYPE | 49 | 52 | 45 | 12 | 19 |
P value = 0.00352 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
DEL PEAK 21(13Q14.2) MUTATED | 14 | 19 | 10 | 69 |
DEL PEAK 21(13Q14.2) WILD-TYPE | 50 | 31 | 16 | 73 |
P value = 7e-05 (Fisher's exact test), Q value = 0.00092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 22(14Q32.31) MUTATED | 17 | 25 | 8 |
DEL PEAK 22(14Q32.31) WILD-TYPE | 112 | 48 | 85 |
P value = 0.00771 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
DEL PEAK 22(14Q32.31) MUTATED | 1 | 12 | 5 | 6 | 6 |
DEL PEAK 22(14Q32.31) WILD-TYPE | 31 | 35 | 40 | 17 | 11 |
P value = 0.0134 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 22(14Q32.31) MUTATED | 7 | 10 | 20 | 12 |
DEL PEAK 22(14Q32.31) WILD-TYPE | 47 | 90 | 49 | 57 |
P value = 0.00955 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
DEL PEAK 22(14Q32.31) MUTATED | 17 | 22 | 10 |
DEL PEAK 22(14Q32.31) WILD-TYPE | 55 | 163 | 25 |
P value = 0.0265 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
DEL PEAK 22(14Q32.31) MUTATED | 13 | 19 | 4 | 4 | 10 |
DEL PEAK 22(14Q32.31) WILD-TYPE | 47 | 76 | 68 | 21 | 33 |
P value = 9e-05 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 23(15Q21.1) MUTATED | 20 | 31 | 19 |
DEL PEAK 23(15Q21.1) WILD-TYPE | 109 | 42 | 74 |
P value = 0.047 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
DEL PEAK 23(15Q21.1) MUTATED | 24 | 36 | 10 |
DEL PEAK 23(15Q21.1) WILD-TYPE | 48 | 149 | 25 |
P value = 0.0103 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
DEL PEAK 23(15Q21.1) MUTATED | 27 | 9 | 34 |
DEL PEAK 23(15Q21.1) WILD-TYPE | 72 | 68 | 85 |
P value = 0.033 (Fisher's exact test), Q value = 0.092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
DEL PEAK 23(15Q21.1) MUTATED | 20 | 21 | 9 | 6 | 14 |
DEL PEAK 23(15Q21.1) WILD-TYPE | 40 | 74 | 63 | 19 | 29 |
P value = 0.0196 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 77 | 80 |
DEL PEAK 23(15Q21.1) MUTATED | 40 | 12 | 16 |
DEL PEAK 23(15Q21.1) WILD-TYPE | 85 | 65 | 64 |
P value = 0.00199 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
DEL PEAK 24(16Q11.2) MUTATED | 22 | 8 | 2 | 10 | 2 | 9 |
DEL PEAK 24(16Q11.2) WILD-TYPE | 49 | 46 | 55 | 49 | 7 | 36 |
P value = 0.0366 (Fisher's exact test), Q value = 0.099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 24(16Q11.2) MUTATED | 11 | 12 | 20 | 10 |
DEL PEAK 24(16Q11.2) WILD-TYPE | 43 | 88 | 49 | 59 |
P value = 0.0105 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
DEL PEAK 24(16Q11.2) MUTATED | 22 | 26 | 5 |
DEL PEAK 24(16Q11.2) WILD-TYPE | 50 | 159 | 30 |
P value = 0.0113 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
DEL PEAK 24(16Q11.2) MUTATED | 27 | 12 | 14 |
DEL PEAK 24(16Q11.2) WILD-TYPE | 72 | 65 | 105 |
P value = 0.0107 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
DEL PEAK 24(16Q11.2) MUTATED | 18 | 14 | 6 | 7 | 8 |
DEL PEAK 24(16Q11.2) WILD-TYPE | 42 | 81 | 66 | 18 | 35 |
P value = 0.0136 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
DEL PEAK 24(16Q11.2) MUTATED | 20 | 5 | 6 | 21 |
DEL PEAK 24(16Q11.2) WILD-TYPE | 44 | 45 | 20 | 121 |
P value = 0.013 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 25(16Q23.1) MUTATED | 17 | 22 | 16 |
DEL PEAK 25(16Q23.1) WILD-TYPE | 112 | 51 | 77 |
P value = 8e-04 (Fisher's exact test), Q value = 0.0059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
DEL PEAK 25(16Q23.1) MUTATED | 24 | 7 | 4 | 10 | 4 | 6 |
DEL PEAK 25(16Q23.1) WILD-TYPE | 47 | 47 | 53 | 49 | 5 | 39 |
P value = 0.00046 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 25(16Q23.1) MUTATED | 14 | 8 | 22 | 11 |
DEL PEAK 25(16Q23.1) WILD-TYPE | 40 | 92 | 47 | 58 |
P value = 0.00035 (Fisher's exact test), Q value = 0.0033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
DEL PEAK 25(16Q23.1) MUTATED | 25 | 23 | 7 |
DEL PEAK 25(16Q23.1) WILD-TYPE | 47 | 162 | 28 |
P value = 0.0261 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
DEL PEAK 25(16Q23.1) MUTATED | 27 | 12 | 16 |
DEL PEAK 25(16Q23.1) WILD-TYPE | 72 | 65 | 103 |
P value = 0.00058 (Fisher's exact test), Q value = 0.0046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
DEL PEAK 25(16Q23.1) MUTATED | 20 | 16 | 4 | 7 | 8 |
DEL PEAK 25(16Q23.1) WILD-TYPE | 40 | 79 | 68 | 18 | 35 |
P value = 0.0496 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 77 | 80 |
DEL PEAK 25(16Q23.1) MUTATED | 32 | 12 | 10 |
DEL PEAK 25(16Q23.1) WILD-TYPE | 93 | 65 | 70 |
P value = 0.00319 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
DEL PEAK 25(16Q23.1) MUTATED | 22 | 4 | 4 | 24 |
DEL PEAK 25(16Q23.1) WILD-TYPE | 42 | 46 | 22 | 118 |
P value = 0.00056 (Fisher's exact test), Q value = 0.0045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 26(17P12) MUTATED | 34 | 39 | 36 |
DEL PEAK 26(17P12) WILD-TYPE | 95 | 34 | 57 |
P value = 0.00016 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
DEL PEAK 27(17Q25.3) MUTATED | 3 | 19 | 8 | 14 | 1 | 6 |
DEL PEAK 27(17Q25.3) WILD-TYPE | 68 | 35 | 49 | 45 | 8 | 39 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 27(17Q25.3) MUTATED | 5 | 21 | 2 | 22 |
DEL PEAK 27(17Q25.3) WILD-TYPE | 49 | 79 | 67 | 47 |
P value = 0.00101 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
DEL PEAK 27(17Q25.3) MUTATED | 3 | 39 | 8 |
DEL PEAK 27(17Q25.3) WILD-TYPE | 69 | 146 | 27 |
P value = 0.00336 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
DEL PEAK 27(17Q25.3) MUTATED | 9 | 11 | 31 |
DEL PEAK 27(17Q25.3) WILD-TYPE | 90 | 66 | 88 |
P value = 0.00088 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
DEL PEAK 27(17Q25.3) MUTATED | 1 | 23 | 12 | 6 | 9 |
DEL PEAK 27(17Q25.3) WILD-TYPE | 59 | 72 | 60 | 19 | 34 |
P value = 0.0057 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
DEL PEAK 27(17Q25.3) MUTATED | 3 | 8 | 3 | 33 |
DEL PEAK 27(17Q25.3) WILD-TYPE | 61 | 42 | 23 | 109 |
P value = 0.00011 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
DEL PEAK 28(18Q21.2) MUTATED | 31 | 9 | 10 | 25 | 1 | 6 |
DEL PEAK 28(18Q21.2) WILD-TYPE | 40 | 45 | 47 | 34 | 8 | 39 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 28(18Q21.2) MUTATED | 12 | 9 | 31 | 30 |
DEL PEAK 28(18Q21.2) WILD-TYPE | 42 | 91 | 38 | 39 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
DEL PEAK 28(18Q21.2) MUTATED | 32 | 35 | 15 |
DEL PEAK 28(18Q21.2) WILD-TYPE | 40 | 150 | 20 |
P value = 0.0158 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
DEL PEAK 28(18Q21.2) MUTATED | 31 | 12 | 39 |
DEL PEAK 28(18Q21.2) WILD-TYPE | 68 | 65 | 80 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
DEL PEAK 28(18Q21.2) MUTATED | 29 | 18 | 11 | 4 | 20 |
DEL PEAK 28(18Q21.2) WILD-TYPE | 31 | 77 | 61 | 21 | 23 |
P value = 0.0384 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 77 | 80 |
DEL PEAK 28(18Q21.2) MUTATED | 45 | 15 | 22 |
DEL PEAK 28(18Q21.2) WILD-TYPE | 80 | 62 | 58 |
P value = 0.00269 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
DEL PEAK 28(18Q21.2) MUTATED | 29 | 7 | 6 | 40 |
DEL PEAK 28(18Q21.2) WILD-TYPE | 35 | 43 | 20 | 102 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 29(19P13.3) MUTATED | 24 | 52 | 29 |
DEL PEAK 29(19P13.3) WILD-TYPE | 105 | 21 | 64 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
DEL PEAK 29(19P13.3) MUTATED | 25 | 16 | 9 | 39 | 2 | 14 |
DEL PEAK 29(19P13.3) WILD-TYPE | 46 | 38 | 48 | 20 | 7 | 31 |
P value = 0.00023 (Fisher's exact test), Q value = 0.0024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 29(19P13.3) MUTATED | 17 | 23 | 25 | 39 |
DEL PEAK 29(19P13.3) WILD-TYPE | 37 | 77 | 44 | 30 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
DEL PEAK 29(19P13.3) MUTATED | 25 | 53 | 26 |
DEL PEAK 29(19P13.3) WILD-TYPE | 47 | 132 | 9 |
P value = 0.0132 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
DEL PEAK 29(19P13.3) MUTATED | 40 | 17 | 48 |
DEL PEAK 29(19P13.3) WILD-TYPE | 59 | 60 | 71 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
DEL PEAK 29(19P13.3) MUTATED | 17 | 36 | 13 | 13 | 26 |
DEL PEAK 29(19P13.3) WILD-TYPE | 43 | 59 | 59 | 12 | 17 |
P value = 0.0469 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 77 | 80 |
DEL PEAK 29(19P13.3) MUTATED | 52 | 19 | 30 |
DEL PEAK 29(19P13.3) WILD-TYPE | 73 | 58 | 50 |
P value = 0.048 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 64 | 50 | 26 | 142 |
DEL PEAK 29(19P13.3) MUTATED | 20 | 11 | 9 | 61 |
DEL PEAK 29(19P13.3) WILD-TYPE | 44 | 39 | 17 | 81 |
P value = 0.047 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
DEL PEAK 30(19Q13.33) MUTATED | 13 | 7 | 1 | 9 | 1 | 7 |
DEL PEAK 30(19Q13.33) WILD-TYPE | 58 | 47 | 56 | 50 | 8 | 38 |
P value = 0.026 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
DEL PEAK 31(20P12.1) MUTATED | 10 | 3 | 3 | 14 | 0 | 6 |
DEL PEAK 31(20P12.1) WILD-TYPE | 61 | 51 | 54 | 45 | 9 | 39 |
P value = 0.00731 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 100 | 69 | 69 |
DEL PEAK 31(20P12.1) MUTATED | 2 | 8 | 11 | 15 |
DEL PEAK 31(20P12.1) WILD-TYPE | 52 | 92 | 58 | 54 |
P value = 0.00019 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 32(21Q11.2) MUTATED | 13 | 24 | 21 |
DEL PEAK 32(21Q11.2) WILD-TYPE | 116 | 49 | 72 |
P value = 0.00493 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
DEL PEAK 32(21Q11.2) MUTATED | 6 | 7 | 2 | 8 | 6 |
DEL PEAK 32(21Q11.2) WILD-TYPE | 26 | 40 | 43 | 15 | 11 |
P value = 0.00922 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
DEL PEAK 32(21Q11.2) MUTATED | 14 | 30 | 14 |
DEL PEAK 32(21Q11.2) WILD-TYPE | 58 | 155 | 21 |
P value = 0.0048 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 33(22Q13.32) MUTATED | 28 | 32 | 28 |
DEL PEAK 33(22Q13.32) WILD-TYPE | 101 | 41 | 65 |
P value = 0.0294 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 72 | 185 | 35 |
DEL PEAK 33(22Q13.32) MUTATED | 23 | 48 | 17 |
DEL PEAK 33(22Q13.32) WILD-TYPE | 49 | 137 | 18 |
P value = 0.00071 (Fisher's exact test), Q value = 0.0053
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 129 | 73 | 93 |
DEL PEAK 34(XP11.3) MUTATED | 22 | 30 | 20 |
DEL PEAK 34(XP11.3) WILD-TYPE | 107 | 43 | 73 |
P value = 0.00032 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 71 | 54 | 57 | 59 | 9 | 45 |
DEL PEAK 34(XP11.3) MUTATED | 12 | 18 | 6 | 24 | 4 | 8 |
DEL PEAK 34(XP11.3) WILD-TYPE | 59 | 36 | 51 | 35 | 5 | 37 |
P value = 0.00027 (Fisher's exact test), Q value = 0.0027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 99 | 77 | 119 |
DEL PEAK 34(XP11.3) MUTATED | 22 | 8 | 42 |
DEL PEAK 34(XP11.3) WILD-TYPE | 77 | 69 | 77 |
P value = 0.0321 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 60 | 95 | 72 | 25 | 43 |
DEL PEAK 34(XP11.3) MUTATED | 11 | 28 | 10 | 9 | 14 |
DEL PEAK 34(XP11.3) WILD-TYPE | 49 | 67 | 62 | 16 | 29 |
P value = 0.00308 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 125 | 77 | 80 |
DEL PEAK 34(XP11.3) MUTATED | 29 | 10 | 29 |
DEL PEAK 34(XP11.3) WILD-TYPE | 96 | 67 | 51 |
P value = 0.0111 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 32 | 47 | 45 | 23 | 17 |
DEL PEAK 35(XQ21.33) MUTATED | 2 | 9 | 14 | 5 | 0 |
DEL PEAK 35(XQ21.33) WILD-TYPE | 30 | 38 | 31 | 18 | 17 |
-
Copy number data file = all_lesions.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/CESC-TP/15082576/transformed.cor.cli.txt
-
Molecular subtype file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/CESC-TP/15095897/CESC-TP.transferedmergedcluster.txt
-
Number of patients = 295
-
Number of significantly focal cnvs = 63
-
Number of molecular subtypes = 10
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Exclude genes that fewer than K tumors have alterations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.