This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.
Testing the association between mutation status of 38 genes and 10 molecular subtypes across 194 patients, 16 significant findings detected with P value < 0.05 and Q value < 0.25.
-
KRAS mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
HLA-A mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
-
ARID1A mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
-
EP300 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
-
PIK3CA mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
-
ERBB3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nMutated (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
KRAS | 11 (6%) | 183 |
0.565 (0.893) |
0.00384 (0.145) |
0.806 (1.00) |
0.219 (0.728) |
0.00448 (0.145) |
0.00165 (0.125) |
0.00322 (0.145) |
0.00074 (0.0937) |
0.0372 (0.389) |
0.00019 (0.0722) |
ARID1A | 14 (7%) | 180 |
0.00691 (0.202) |
0.00423 (0.145) |
0.926 (1.00) |
0.124 (0.636) |
0.167 (0.691) |
0.00066 (0.0937) |
0.102 (0.578) |
0.00444 (0.145) |
0.701 (0.955) |
0.00457 (0.145) |
HLA-A | 16 (8%) | 178 |
0.259 (0.758) |
0.0943 (0.56) |
0.223 (0.728) |
0.0176 (0.341) |
0.00101 (0.0959) |
0.067 (0.498) |
0.433 (0.85) |
0.00789 (0.214) |
0.692 (0.952) |
0.419 (0.848) |
EP300 | 21 (11%) | 173 |
1 (1.00) |
0.0264 (0.386) |
0.247 (0.754) |
0.0379 (0.389) |
0.135 (0.651) |
0.0722 (0.498) |
0.84 (1.00) |
0.00965 (0.24) |
1 (1.00) |
0.25 (0.754) |
PIK3CA | 53 (27%) | 141 |
0.0354 (0.389) |
0.283 (0.777) |
0.432 (0.85) |
0.299 (0.777) |
0.35 (0.805) |
0.00392 (0.145) |
0.333 (0.804) |
0.347 (0.804) |
0.483 (0.855) |
0.233 (0.736) |
ERBB3 | 11 (6%) | 183 |
0.0726 (0.498) |
0.125 (0.636) |
0.914 (1.00) |
0.791 (1.00) |
0.0324 (0.389) |
0.0101 (0.24) |
0.0784 (0.523) |
0.029 (0.389) |
0.93 (1.00) |
0.334 (0.804) |
FBXW7 | 19 (10%) | 175 |
0.496 (0.857) |
0.259 (0.758) |
0.946 (1.00) |
0.971 (1.00) |
0.339 (0.804) |
0.679 (0.952) |
0.402 (0.827) |
0.457 (0.85) |
0.226 (0.728) |
0.543 (0.883) |
HLA-B | 11 (6%) | 183 |
0.519 (0.866) |
0.164 (0.691) |
0.685 (0.952) |
0.327 (0.804) |
0.238 (0.738) |
0.0923 (0.557) |
0.0192 (0.347) |
0.134 (0.651) |
0.0135 (0.302) |
0.0478 (0.454) |
PTEN | 15 (8%) | 179 |
0.566 (0.893) |
0.343 (0.804) |
0.905 (1.00) |
0.591 (0.908) |
0.0261 (0.386) |
0.228 (0.728) |
0.434 (0.85) |
0.194 (0.706) |
1 (1.00) |
0.418 (0.848) |
MAPK1 | 9 (5%) | 185 |
0.552 (0.888) |
0.227 (0.728) |
0.322 (0.804) |
0.975 (1.00) |
0.0904 (0.554) |
0.055 (0.475) |
0.182 (0.706) |
0.0826 (0.541) |
0.021 (0.363) |
0.0222 (0.366) |
NFE2L2 | 12 (6%) | 182 |
0.927 (1.00) |
0.0979 (0.572) |
0.299 (0.777) |
0.0501 (0.465) |
0.458 (0.85) |
0.0465 (0.453) |
0.0362 (0.389) |
0.0179 (0.341) |
0.386 (0.827) |
0.0734 (0.498) |
FAT2 | 11 (6%) | 183 |
0.613 (0.911) |
0.0516 (0.467) |
0.9 (1.00) |
0.623 (0.917) |
0.0646 (0.498) |
0.482 (0.855) |
0.583 (0.904) |
0.762 (1.00) |
0.0704 (0.498) |
0.0895 (0.554) |
ZNF750 | 10 (5%) | 184 |
0.0854 (0.55) |
0.367 (0.823) |
0.9 (1.00) |
0.154 (0.691) |
0.509 (0.866) |
0.29 (0.777) |
0.182 (0.706) |
0.19 (0.706) |
0.471 (0.854) |
0.0726 (0.498) |
BAP1 | 4 (2%) | 190 |
0.141 (0.662) |
0.0583 (0.48) |
0.511 (0.866) |
0.454 (0.85) |
0.69 (0.952) |
0.353 (0.806) |
0.257 (0.758) |
0.172 (0.697) |
||
RAB35 | 4 (2%) | 190 |
0.259 (0.758) |
0.454 (0.85) |
0.769 (1.00) |
0.454 (0.85) |
0.474 (0.854) |
0.107 (0.587) |
0.292 (0.777) |
0.0312 (0.389) |
||
SMAD4 | 7 (4%) | 187 |
0.488 (0.855) |
0.346 (0.804) |
0.573 (0.893) |
0.92 (1.00) |
0.515 (0.866) |
1 (1.00) |
0.723 (0.977) |
0.599 (0.908) |
1 (1.00) |
0.945 (1.00) |
TCTE1 | 5 (3%) | 189 |
0.182 (0.706) |
0.318 (0.804) |
0.312 (0.801) |
0.0428 (0.428) |
0.0172 (0.341) |
0.405 (0.827) |
0.0247 (0.386) |
0.101 (0.578) |
0.2 (0.706) |
0.337 (0.804) |
NHS | 12 (6%) | 182 |
0.862 (1.00) |
0.978 (1.00) |
0.642 (0.939) |
0.926 (1.00) |
0.759 (1.00) |
0.276 (0.777) |
0.933 (1.00) |
0.831 (1.00) |
0.424 (0.85) |
0.434 (0.85) |
LIN9 | 7 (4%) | 187 |
0.157 (0.691) |
0.374 (0.825) |
0.69 (0.952) |
0.373 (0.825) |
0.534 (0.883) |
0.869 (1.00) |
0.888 (1.00) |
0.269 (0.776) |
0.297 (0.777) |
0.893 (1.00) |
C12ORF43 | 4 (2%) | 190 |
0.199 (0.706) |
0.145 (0.674) |
0.912 (1.00) |
0.456 (0.85) |
0.472 (0.854) |
0.204 (0.706) |
0.292 (0.777) |
0.162 (0.691) |
||
MED1 | 11 (6%) | 183 |
0.923 (1.00) |
0.133 (0.651) |
0.169 (0.692) |
0.156 (0.691) |
0.235 (0.738) |
0.103 (0.578) |
0.187 (0.706) |
0.239 (0.738) |
0.507 (0.866) |
0.122 (0.636) |
USP28 | 4 (2%) | 190 |
0.199 (0.706) |
0.541 (0.883) |
0.321 (0.804) |
0.91 (1.00) |
0.604 (0.908) |
1 (1.00) |
0.389 (0.827) |
0.938 (1.00) |
0.202 (0.706) |
0.822 (1.00) |
IDS | 7 (4%) | 187 |
0.189 (0.706) |
0.534 (0.883) |
0.248 (0.754) |
0.537 (0.883) |
1 (1.00) |
0.87 (1.00) |
0.493 (0.856) |
0.222 (0.728) |
0.438 (0.85) |
0.714 (0.968) |
TRIM9 | 8 (4%) | 186 |
0.334 (0.804) |
0.786 (1.00) |
0.687 (0.952) |
0.88 (1.00) |
0.0904 (0.554) |
0.661 (0.952) |
0.544 (0.883) |
0.0378 (0.389) |
0.565 (0.893) |
0.358 (0.811) |
SEMA4B | 7 (4%) | 187 |
1 (1.00) |
0.891 (1.00) |
0.368 (0.823) |
0.87 (1.00) |
0.0607 (0.48) |
0.287 (0.777) |
0.389 (0.827) |
0.129 (0.643) |
||
ARHGAP4 | 6 (3%) | 188 |
1 (1.00) |
0.686 (0.952) |
0.852 (1.00) |
0.686 (0.952) |
0.346 (0.804) |
1 (1.00) |
0.509 (0.866) |
0.228 (0.728) |
0.69 (0.952) |
1 (1.00) |
POU2F1 | 3 (2%) | 191 |
0.449 (0.85) |
0.266 (0.77) |
0.614 (0.911) |
0.701 (0.955) |
0.627 (0.92) |
0.488 (0.855) |
0.294 (0.777) |
0.162 (0.691) |
||
IFNGR1 | 6 (3%) | 188 |
1 (1.00) |
0.742 (0.989) |
0.603 (0.908) |
0.911 (1.00) |
0.843 (1.00) |
1 (1.00) |
0.325 (0.804) |
0.0342 (0.389) |
0.0531 (0.469) |
0.784 (1.00) |
IGFN1 | 11 (6%) | 183 |
0.214 (0.728) |
0.38 (0.825) |
0.685 (0.952) |
0.7 (0.955) |
1 (1.00) |
0.593 (0.908) |
0.354 (0.806) |
0.966 (1.00) |
0.331 (0.804) |
0.849 (1.00) |
RPGR | 9 (5%) | 185 |
1 (1.00) |
0.923 (1.00) |
0.688 (0.952) |
0.404 (0.827) |
0.393 (0.827) |
0.879 (1.00) |
0.916 (1.00) |
0.952 (1.00) |
0.761 (1.00) |
0.803 (1.00) |
CASP8 | 9 (5%) | 185 |
0.672 (0.952) |
0.477 (0.855) |
0.517 (0.866) |
0.167 (0.691) |
0.219 (0.728) |
0.463 (0.854) |
0.57 (0.893) |
0.448 (0.85) |
0.123 (0.636) |
0.435 (0.85) |
GAS6 | 4 (2%) | 190 |
0.816 (1.00) |
0.11 (0.598) |
0.458 (0.85) |
0.281 (0.777) |
0.767 (1.00) |
0.454 (0.85) |
1 (1.00) |
0.389 (0.827) |
0.292 (0.777) |
0.756 (1.00) |
ABCD1 | 7 (4%) | 187 |
0.605 (0.908) |
0.925 (1.00) |
0.573 (0.893) |
0.592 (0.908) |
0.179 (0.706) |
0.0338 (0.389) |
0.489 (0.855) |
0.52 (0.866) |
0.0573 (0.48) |
0.376 (0.825) |
RPAP1 | 4 (2%) | 190 |
0.683 (0.952) |
0.608 (0.909) |
0.601 (0.908) |
1 (1.00) |
1 (1.00) |
0.742 (0.989) |
1 (1.00) |
0.904 (1.00) |
||
HIST1H4E | 4 (2%) | 190 |
0.199 (0.706) |
0.734 (0.988) |
0.397 (0.827) |
0.308 (0.797) |
0.474 (0.854) |
0.831 (1.00) |
0.401 (0.827) |
0.38 (0.825) |
||
NLRC5 | 7 (4%) | 187 |
0.681 (0.952) |
0.274 (0.777) |
0.203 (0.706) |
0.736 (0.988) |
0.68 (0.952) |
0.196 (0.706) |
0.138 (0.656) |
0.277 (0.777) |
0.566 (0.893) |
0.161 (0.691) |
DDX41 | 5 (3%) | 189 |
0.0291 (0.389) |
0.115 (0.616) |
0.567 (0.893) |
0.402 (0.827) |
0.331 (0.804) |
0.779 (1.00) |
1 (1.00) |
0.546 (0.883) |
||
MCM7 | 3 (2%) | 191 |
0.0711 (0.498) |
0.616 (0.911) |
0.467 (0.854) |
1 (1.00) |
0.491 (0.855) |
0.0598 (0.48) |
0.163 (0.691) |
P value = 0.565 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
KRAS MUTATED | 7 | 1 | 3 |
KRAS WILD-TYPE | 83 | 39 | 58 |
P value = 0.00384 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
KRAS MUTATED | 9 | 0 | 1 | 0 | 0 | 1 |
KRAS WILD-TYPE | 41 | 32 | 35 | 36 | 7 | 32 |
P value = 0.806 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
KRAS MUTATED | 3 | 1 | 4 |
KRAS WILD-TYPE | 39 | 30 | 56 |
P value = 0.219 (Fisher's exact test), Q value = 0.73
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
KRAS MUTATED | 2 | 2 | 1 | 0 | 3 |
KRAS WILD-TYPE | 25 | 38 | 31 | 18 | 13 |
P value = 0.00448 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
KRAS MUTATED | 4 | 0 | 6 | 1 |
KRAS WILD-TYPE | 33 | 65 | 43 | 41 |
P value = 0.00165 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
KRAS MUTATED | 8 | 2 | 1 |
KRAS WILD-TYPE | 41 | 118 | 23 |
P value = 0.00322 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
KRAS MUTATED | 7 | 4 | 0 |
KRAS WILD-TYPE | 52 | 52 | 79 |
P value = 0.00074 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
KRAS MUTATED | 8 | 0 | 2 | 1 | 0 |
KRAS WILD-TYPE | 33 | 50 | 56 | 14 | 30 |
P value = 0.0372 (Fisher's exact test), Q value = 0.39
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
KRAS MUTATED | 6 | 5 | 0 |
KRAS WILD-TYPE | 63 | 52 | 58 |
P value = 0.00019 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
KRAS MUTATED | 9 | 1 | 0 | 1 |
KRAS WILD-TYPE | 33 | 31 | 28 | 81 |
P value = 0.259 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
HLA-A MUTATED | 9 | 4 | 2 |
HLA-A WILD-TYPE | 81 | 36 | 59 |
P value = 0.0943 (Fisher's exact test), Q value = 0.56
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
HLA-A MUTATED | 1 | 3 | 5 | 6 | 0 | 1 |
HLA-A WILD-TYPE | 49 | 29 | 31 | 30 | 7 | 32 |
P value = 0.223 (Fisher's exact test), Q value = 0.73
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
HLA-A MUTATED | 5 | 3 | 2 |
HLA-A WILD-TYPE | 37 | 28 | 58 |
P value = 0.0176 (Fisher's exact test), Q value = 0.34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
HLA-A MUTATED | 5 | 0 | 4 | 1 | 0 |
HLA-A WILD-TYPE | 22 | 40 | 28 | 17 | 16 |
P value = 0.00101 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
HLA-A MUTATED | 1 | 6 | 0 | 9 |
HLA-A WILD-TYPE | 36 | 59 | 49 | 33 |
P value = 0.067 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
HLA-A MUTATED | 1 | 11 | 4 |
HLA-A WILD-TYPE | 48 | 109 | 20 |
P value = 0.433 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
HLA-A MUTATED | 3 | 4 | 9 |
HLA-A WILD-TYPE | 56 | 52 | 70 |
P value = 0.00789 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
HLA-A MUTATED | 0 | 4 | 3 | 3 | 6 |
HLA-A WILD-TYPE | 41 | 46 | 55 | 12 | 24 |
P value = 0.692 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
HLA-A MUTATED | 4 | 4 | 6 |
HLA-A WILD-TYPE | 65 | 53 | 52 |
P value = 0.419 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
HLA-A MUTATED | 1 | 2 | 2 | 9 |
HLA-A WILD-TYPE | 41 | 30 | 26 | 73 |
P value = 0.496 (Fisher's exact test), Q value = 0.86
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
FBXW7 MUTATED | 11 | 3 | 4 |
FBXW7 WILD-TYPE | 79 | 37 | 57 |
P value = 0.259 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
FBXW7 MUTATED | 6 | 4 | 4 | 5 | 0 | 0 |
FBXW7 WILD-TYPE | 44 | 28 | 32 | 31 | 7 | 33 |
P value = 0.946 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
FBXW7 MUTATED | 6 | 4 | 7 |
FBXW7 WILD-TYPE | 36 | 27 | 53 |
P value = 0.971 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
FBXW7 MUTATED | 3 | 5 | 4 | 2 | 3 |
FBXW7 WILD-TYPE | 24 | 35 | 28 | 16 | 13 |
P value = 0.339 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
FBXW7 MUTATED | 1 | 9 | 5 | 4 |
FBXW7 WILD-TYPE | 36 | 56 | 44 | 38 |
P value = 0.679 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
FBXW7 MUTATED | 6 | 12 | 1 |
FBXW7 WILD-TYPE | 43 | 108 | 23 |
P value = 0.402 (Fisher's exact test), Q value = 0.83
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
FBXW7 MUTATED | 6 | 3 | 10 |
FBXW7 WILD-TYPE | 53 | 53 | 69 |
P value = 0.457 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
FBXW7 MUTATED | 4 | 8 | 3 | 1 | 3 |
FBXW7 WILD-TYPE | 37 | 42 | 55 | 14 | 27 |
P value = 0.226 (Fisher's exact test), Q value = 0.73
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
FBXW7 MUTATED | 10 | 3 | 6 |
FBXW7 WILD-TYPE | 59 | 54 | 52 |
P value = 0.543 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
FBXW7 MUTATED | 5 | 1 | 3 | 10 |
FBXW7 WILD-TYPE | 37 | 31 | 25 | 72 |
P value = 0.519 (Fisher's exact test), Q value = 0.87
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
HLA-B MUTATED | 7 | 2 | 2 |
HLA-B WILD-TYPE | 83 | 38 | 59 |
P value = 0.164 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
HLA-B MUTATED | 0 | 4 | 3 | 2 | 0 | 2 |
HLA-B WILD-TYPE | 50 | 28 | 33 | 34 | 7 | 31 |
P value = 0.685 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
HLA-B MUTATED | 4 | 2 | 3 |
HLA-B WILD-TYPE | 38 | 29 | 57 |
P value = 0.327 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
HLA-B MUTATED | 3 | 1 | 4 | 1 | 0 |
HLA-B WILD-TYPE | 24 | 39 | 28 | 17 | 16 |
P value = 0.238 (Fisher's exact test), Q value = 0.74
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
HLA-B MUTATED | 1 | 4 | 1 | 5 |
HLA-B WILD-TYPE | 36 | 61 | 48 | 37 |
P value = 0.0923 (Fisher's exact test), Q value = 0.56
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
HLA-B MUTATED | 0 | 10 | 1 |
HLA-B WILD-TYPE | 49 | 110 | 23 |
P value = 0.0192 (Fisher's exact test), Q value = 0.35
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
HLA-B MUTATED | 1 | 1 | 9 |
HLA-B WILD-TYPE | 58 | 55 | 70 |
P value = 0.134 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
HLA-B MUTATED | 0 | 5 | 2 | 1 | 3 |
HLA-B WILD-TYPE | 41 | 45 | 56 | 14 | 27 |
P value = 0.0135 (Fisher's exact test), Q value = 0.3
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
HLA-B MUTATED | 3 | 0 | 7 |
HLA-B WILD-TYPE | 66 | 57 | 51 |
P value = 0.0478 (Fisher's exact test), Q value = 0.45
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
HLA-B MUTATED | 0 | 0 | 2 | 8 |
HLA-B WILD-TYPE | 42 | 32 | 26 | 74 |
P value = 0.566 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
PTEN MUTATED | 9 | 3 | 3 |
PTEN WILD-TYPE | 81 | 37 | 58 |
P value = 0.343 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
PTEN MUTATED | 5 | 2 | 3 | 1 | 2 | 2 |
PTEN WILD-TYPE | 45 | 30 | 33 | 35 | 5 | 31 |
P value = 0.905 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
PTEN MUTATED | 2 | 2 | 5 |
PTEN WILD-TYPE | 40 | 29 | 55 |
P value = 0.591 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
PTEN MUTATED | 2 | 2 | 4 | 0 | 1 |
PTEN WILD-TYPE | 25 | 38 | 28 | 18 | 15 |
P value = 0.0261 (Fisher's exact test), Q value = 0.39
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
PTEN MUTATED | 5 | 8 | 2 | 0 |
PTEN WILD-TYPE | 32 | 57 | 47 | 42 |
P value = 0.228 (Fisher's exact test), Q value = 0.73
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
PTEN MUTATED | 6 | 9 | 0 |
PTEN WILD-TYPE | 43 | 111 | 24 |
P value = 0.434 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
PTEN MUTATED | 7 | 3 | 5 |
PTEN WILD-TYPE | 52 | 53 | 74 |
P value = 0.194 (Fisher's exact test), Q value = 0.71
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
PTEN MUTATED | 4 | 6 | 3 | 2 | 0 |
PTEN WILD-TYPE | 37 | 44 | 55 | 13 | 30 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
PTEN MUTATED | 6 | 4 | 5 |
PTEN WILD-TYPE | 63 | 53 | 53 |
P value = 0.418 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
PTEN MUTATED | 4 | 4 | 3 | 4 |
PTEN WILD-TYPE | 38 | 28 | 25 | 78 |
P value = 0.00691 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
ARID1A MUTATED | 11 | 3 | 0 |
ARID1A WILD-TYPE | 79 | 37 | 61 |
P value = 0.00423 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
ARID1A MUTATED | 10 | 2 | 2 | 0 | 0 | 0 |
ARID1A WILD-TYPE | 40 | 30 | 34 | 36 | 7 | 33 |
P value = 0.926 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
ARID1A MUTATED | 3 | 3 | 5 |
ARID1A WILD-TYPE | 39 | 28 | 55 |
P value = 0.124 (Fisher's exact test), Q value = 0.64
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
ARID1A MUTATED | 2 | 2 | 3 | 0 | 4 |
ARID1A WILD-TYPE | 25 | 38 | 29 | 18 | 12 |
P value = 0.167 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
ARID1A MUTATED | 5 | 2 | 5 | 2 |
ARID1A WILD-TYPE | 32 | 63 | 44 | 40 |
P value = 0.00066 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
ARID1A MUTATED | 10 | 4 | 0 |
ARID1A WILD-TYPE | 39 | 116 | 24 |
P value = 0.102 (Fisher's exact test), Q value = 0.58
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
ARID1A MUTATED | 8 | 2 | 4 |
ARID1A WILD-TYPE | 51 | 54 | 75 |
P value = 0.00444 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
ARID1A MUTATED | 7 | 1 | 1 | 3 | 2 |
ARID1A WILD-TYPE | 34 | 49 | 57 | 12 | 28 |
P value = 0.701 (Fisher's exact test), Q value = 0.96
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
ARID1A MUTATED | 6 | 3 | 3 |
ARID1A WILD-TYPE | 63 | 54 | 55 |
P value = 0.00457 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
ARID1A MUTATED | 7 | 0 | 3 | 2 |
ARID1A WILD-TYPE | 35 | 32 | 25 | 80 |
P value = 0.552 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
MAPK1 MUTATED | 6 | 1 | 2 |
MAPK1 WILD-TYPE | 84 | 39 | 59 |
P value = 0.227 (Fisher's exact test), Q value = 0.73
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
MAPK1 MUTATED | 0 | 2 | 3 | 1 | 0 | 3 |
MAPK1 WILD-TYPE | 50 | 30 | 33 | 35 | 7 | 30 |
P value = 0.322 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
MAPK1 MUTATED | 3 | 0 | 4 |
MAPK1 WILD-TYPE | 39 | 31 | 56 |
P value = 0.975 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
MAPK1 MUTATED | 2 | 2 | 1 | 1 | 1 |
MAPK1 WILD-TYPE | 25 | 38 | 31 | 17 | 15 |
P value = 0.0904 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
MAPK1 MUTATED | 2 | 6 | 0 | 1 |
MAPK1 WILD-TYPE | 35 | 59 | 49 | 41 |
P value = 0.055 (Fisher's exact test), Q value = 0.47
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
MAPK1 MUTATED | 0 | 9 | 0 |
MAPK1 WILD-TYPE | 49 | 111 | 24 |
P value = 0.182 (Fisher's exact test), Q value = 0.71
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
MAPK1 MUTATED | 1 | 5 | 3 |
MAPK1 WILD-TYPE | 58 | 51 | 76 |
P value = 0.0826 (Fisher's exact test), Q value = 0.54
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
MAPK1 MUTATED | 0 | 2 | 6 | 1 | 0 |
MAPK1 WILD-TYPE | 41 | 48 | 52 | 14 | 30 |
P value = 0.021 (Fisher's exact test), Q value = 0.36
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
MAPK1 MUTATED | 0 | 5 | 4 |
MAPK1 WILD-TYPE | 69 | 52 | 54 |
P value = 0.0222 (Fisher's exact test), Q value = 0.37
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
MAPK1 MUTATED | 0 | 5 | 1 | 3 |
MAPK1 WILD-TYPE | 42 | 27 | 27 | 79 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
EP300 MUTATED | 10 | 4 | 6 |
EP300 WILD-TYPE | 80 | 36 | 55 |
P value = 0.0264 (Fisher's exact test), Q value = 0.39
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
EP300 MUTATED | 2 | 7 | 5 | 1 | 2 | 4 |
EP300 WILD-TYPE | 48 | 25 | 31 | 35 | 5 | 29 |
P value = 0.247 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
EP300 MUTATED | 2 | 4 | 9 |
EP300 WILD-TYPE | 40 | 27 | 51 |
P value = 0.0379 (Fisher's exact test), Q value = 0.39
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
EP300 MUTATED | 2 | 5 | 8 | 0 | 0 |
EP300 WILD-TYPE | 25 | 35 | 24 | 18 | 16 |
P value = 0.135 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
EP300 MUTATED | 6 | 10 | 2 | 3 |
EP300 WILD-TYPE | 31 | 55 | 47 | 39 |
P value = 0.0722 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
EP300 MUTATED | 2 | 18 | 1 |
EP300 WILD-TYPE | 47 | 102 | 23 |
P value = 0.84 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
EP300 MUTATED | 6 | 5 | 10 |
EP300 WILD-TYPE | 53 | 51 | 69 |
P value = 0.00965 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
EP300 MUTATED | 1 | 9 | 10 | 1 | 0 |
EP300 WILD-TYPE | 40 | 41 | 48 | 14 | 30 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
EP300 MUTATED | 7 | 5 | 6 |
EP300 WILD-TYPE | 62 | 52 | 52 |
P value = 0.25 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
EP300 MUTATED | 2 | 3 | 1 | 12 |
EP300 WILD-TYPE | 40 | 29 | 27 | 70 |
P value = 0.0354 (Fisher's exact test), Q value = 0.39
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
PIK3CA MUTATED | 33 | 7 | 13 |
PIK3CA WILD-TYPE | 57 | 33 | 48 |
P value = 0.283 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
PIK3CA MUTATED | 18 | 8 | 11 | 5 | 1 | 10 |
PIK3CA WILD-TYPE | 32 | 24 | 25 | 31 | 6 | 23 |
P value = 0.432 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
PIK3CA MUTATED | 12 | 5 | 12 |
PIK3CA WILD-TYPE | 30 | 26 | 48 |
P value = 0.299 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
PIK3CA MUTATED | 9 | 8 | 4 | 3 | 5 |
PIK3CA WILD-TYPE | 18 | 32 | 28 | 15 | 11 |
P value = 0.35 (Fisher's exact test), Q value = 0.81
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
PIK3CA MUTATED | 10 | 19 | 16 | 7 |
PIK3CA WILD-TYPE | 27 | 46 | 33 | 35 |
P value = 0.00392 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
PIK3CA MUTATED | 19 | 32 | 1 |
PIK3CA WILD-TYPE | 30 | 88 | 23 |
P value = 0.333 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
PIK3CA MUTATED | 20 | 12 | 21 |
PIK3CA WILD-TYPE | 39 | 44 | 58 |
P value = 0.347 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
PIK3CA MUTATED | 14 | 17 | 13 | 4 | 5 |
PIK3CA WILD-TYPE | 27 | 33 | 45 | 11 | 25 |
P value = 0.483 (Fisher's exact test), Q value = 0.86
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
PIK3CA MUTATED | 22 | 13 | 14 |
PIK3CA WILD-TYPE | 47 | 44 | 44 |
P value = 0.233 (Fisher's exact test), Q value = 0.74
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
PIK3CA MUTATED | 16 | 9 | 7 | 17 |
PIK3CA WILD-TYPE | 26 | 23 | 21 | 65 |
P value = 0.927 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
NFE2L2 MUTATED | 5 | 3 | 4 |
NFE2L2 WILD-TYPE | 85 | 37 | 57 |
P value = 0.0979 (Fisher's exact test), Q value = 0.57
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
NFE2L2 MUTATED | 0 | 4 | 2 | 2 | 0 | 4 |
NFE2L2 WILD-TYPE | 50 | 28 | 34 | 34 | 7 | 29 |
P value = 0.299 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
NFE2L2 MUTATED | 4 | 3 | 2 |
NFE2L2 WILD-TYPE | 38 | 28 | 58 |
P value = 0.0501 (Fisher's exact test), Q value = 0.46
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
NFE2L2 MUTATED | 1 | 0 | 4 | 3 | 1 |
NFE2L2 WILD-TYPE | 26 | 40 | 28 | 15 | 15 |
P value = 0.458 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
NFE2L2 MUTATED | 2 | 5 | 1 | 4 |
NFE2L2 WILD-TYPE | 35 | 60 | 48 | 38 |
P value = 0.0465 (Fisher's exact test), Q value = 0.45
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
NFE2L2 MUTATED | 0 | 11 | 1 |
NFE2L2 WILD-TYPE | 49 | 109 | 23 |
P value = 0.0362 (Fisher's exact test), Q value = 0.39
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
NFE2L2 MUTATED | 0 | 5 | 7 |
NFE2L2 WILD-TYPE | 59 | 51 | 72 |
P value = 0.0179 (Fisher's exact test), Q value = 0.34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
NFE2L2 MUTATED | 0 | 1 | 6 | 3 | 2 |
NFE2L2 WILD-TYPE | 41 | 49 | 52 | 12 | 28 |
P value = 0.386 (Fisher's exact test), Q value = 0.83
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
NFE2L2 MUTATED | 2 | 4 | 5 |
NFE2L2 WILD-TYPE | 67 | 53 | 53 |
P value = 0.0734 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
NFE2L2 MUTATED | 0 | 2 | 4 | 5 |
NFE2L2 WILD-TYPE | 42 | 30 | 24 | 77 |
P value = 0.613 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
FAT2 MUTATED | 6 | 3 | 2 |
FAT2 WILD-TYPE | 84 | 37 | 59 |
P value = 0.0516 (Fisher's exact test), Q value = 0.47
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
FAT2 MUTATED | 1 | 5 | 2 | 2 | 1 | 0 |
FAT2 WILD-TYPE | 49 | 27 | 34 | 34 | 6 | 33 |
P value = 0.9 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
FAT2 MUTATED | 3 | 2 | 3 |
FAT2 WILD-TYPE | 39 | 29 | 57 |
P value = 0.623 (Fisher's exact test), Q value = 0.92
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
FAT2 MUTATED | 1 | 2 | 3 | 2 | 0 |
FAT2 WILD-TYPE | 26 | 38 | 29 | 16 | 16 |
P value = 0.0646 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
FAT2 MUTATED | 0 | 5 | 1 | 5 |
FAT2 WILD-TYPE | 37 | 60 | 48 | 37 |
P value = 0.482 (Fisher's exact test), Q value = 0.86
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
FAT2 MUTATED | 1 | 9 | 1 |
FAT2 WILD-TYPE | 48 | 111 | 23 |
P value = 0.583 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
FAT2 MUTATED | 2 | 3 | 6 |
FAT2 WILD-TYPE | 57 | 53 | 73 |
P value = 0.762 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
FAT2 MUTATED | 1 | 4 | 4 | 0 | 2 |
FAT2 WILD-TYPE | 40 | 46 | 54 | 15 | 28 |
P value = 0.0704 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
FAT2 MUTATED | 3 | 1 | 7 |
FAT2 WILD-TYPE | 66 | 56 | 51 |
P value = 0.0895 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
FAT2 MUTATED | 1 | 0 | 1 | 9 |
FAT2 WILD-TYPE | 41 | 32 | 27 | 73 |
P value = 0.0854 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
ZNF750 MUTATED | 8 | 0 | 2 |
ZNF750 WILD-TYPE | 82 | 40 | 59 |
P value = 0.367 (Fisher's exact test), Q value = 0.82
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
ZNF750 MUTATED | 1 | 3 | 4 | 1 | 0 | 1 |
ZNF750 WILD-TYPE | 49 | 29 | 32 | 35 | 7 | 32 |
P value = 0.9 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
ZNF750 MUTATED | 3 | 2 | 3 |
ZNF750 WILD-TYPE | 39 | 29 | 57 |
P value = 0.154 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
ZNF750 MUTATED | 4 | 1 | 3 | 0 | 0 |
ZNF750 WILD-TYPE | 23 | 39 | 29 | 18 | 16 |
P value = 0.509 (Fisher's exact test), Q value = 0.87
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
ZNF750 MUTATED | 1 | 5 | 1 | 3 |
ZNF750 WILD-TYPE | 36 | 60 | 48 | 39 |
P value = 0.29 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
ZNF750 MUTATED | 1 | 9 | 0 |
ZNF750 WILD-TYPE | 48 | 111 | 24 |
P value = 0.182 (Fisher's exact test), Q value = 0.71
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
ZNF750 MUTATED | 2 | 1 | 7 |
ZNF750 WILD-TYPE | 57 | 55 | 72 |
P value = 0.19 (Fisher's exact test), Q value = 0.71
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
ZNF750 MUTATED | 0 | 5 | 2 | 1 | 2 |
ZNF750 WILD-TYPE | 41 | 45 | 56 | 14 | 28 |
P value = 0.471 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
ZNF750 MUTATED | 4 | 1 | 4 |
ZNF750 WILD-TYPE | 65 | 56 | 54 |
P value = 0.0726 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
ZNF750 MUTATED | 0 | 0 | 2 | 7 |
ZNF750 WILD-TYPE | 42 | 32 | 26 | 75 |
P value = 0.141 (Fisher's exact test), Q value = 0.66
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
BAP1 MUTATED | 4 | 0 | 0 |
BAP1 WILD-TYPE | 86 | 40 | 61 |
P value = 0.0583 (Fisher's exact test), Q value = 0.48
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
BAP1 MUTATED | 0 | 3 | 1 | 0 | 0 | 0 |
BAP1 WILD-TYPE | 50 | 29 | 35 | 36 | 7 | 33 |
P value = 0.511 (Fisher's exact test), Q value = 0.87
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
BAP1 MUTATED | 0 | 3 | 1 | 0 |
BAP1 WILD-TYPE | 37 | 62 | 48 | 42 |
P value = 0.454 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
BAP1 MUTATED | 0 | 4 | 0 |
BAP1 WILD-TYPE | 49 | 116 | 24 |
P value = 0.69 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
BAP1 MUTATED | 1 | 2 | 1 |
BAP1 WILD-TYPE | 58 | 54 | 78 |
P value = 0.353 (Fisher's exact test), Q value = 0.81
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
BAP1 MUTATED | 0 | 2 | 1 | 1 | 0 |
BAP1 WILD-TYPE | 41 | 48 | 57 | 14 | 30 |
P value = 0.257 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
BAP1 MUTATED | 0 | 2 | 2 |
BAP1 WILD-TYPE | 69 | 55 | 56 |
P value = 0.172 (Fisher's exact test), Q value = 0.7
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
BAP1 MUTATED | 0 | 2 | 1 | 1 |
BAP1 WILD-TYPE | 42 | 30 | 27 | 81 |
P value = 0.259 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
RAB35 MUTATED | 1 | 0 | 3 |
RAB35 WILD-TYPE | 89 | 40 | 58 |
P value = 0.454 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
RAB35 MUTATED | 0 | 0 | 2 | 1 | 0 | 1 |
RAB35 WILD-TYPE | 50 | 32 | 34 | 35 | 7 | 32 |
P value = 0.769 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
RAB35 MUTATED | 1 | 2 | 0 | 1 |
RAB35 WILD-TYPE | 36 | 63 | 49 | 41 |
P value = 0.454 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
RAB35 MUTATED | 0 | 4 | 0 |
RAB35 WILD-TYPE | 49 | 116 | 24 |
P value = 0.474 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
RAB35 MUTATED | 0 | 2 | 2 |
RAB35 WILD-TYPE | 59 | 54 | 77 |
P value = 0.107 (Fisher's exact test), Q value = 0.59
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
RAB35 MUTATED | 0 | 0 | 3 | 1 | 0 |
RAB35 WILD-TYPE | 41 | 50 | 55 | 14 | 30 |
P value = 0.292 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
RAB35 MUTATED | 0 | 1 | 2 |
RAB35 WILD-TYPE | 69 | 56 | 56 |
P value = 0.0312 (Fisher's exact test), Q value = 0.39
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
RAB35 MUTATED | 0 | 1 | 2 | 0 |
RAB35 WILD-TYPE | 42 | 31 | 26 | 82 |
P value = 0.0726 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
ERBB3 MUTATED | 5 | 5 | 1 |
ERBB3 WILD-TYPE | 85 | 35 | 60 |
P value = 0.125 (Fisher's exact test), Q value = 0.64
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
ERBB3 MUTATED | 7 | 2 | 1 | 1 | 0 | 0 |
ERBB3 WILD-TYPE | 43 | 30 | 35 | 35 | 7 | 33 |
P value = 0.914 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
ERBB3 MUTATED | 4 | 2 | 4 |
ERBB3 WILD-TYPE | 38 | 29 | 56 |
P value = 0.791 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
ERBB3 MUTATED | 2 | 2 | 2 | 2 | 2 |
ERBB3 WILD-TYPE | 25 | 38 | 30 | 16 | 14 |
P value = 0.0324 (Fisher's exact test), Q value = 0.39
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
ERBB3 MUTATED | 1 | 1 | 7 | 2 |
ERBB3 WILD-TYPE | 36 | 64 | 42 | 40 |
P value = 0.0101 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
ERBB3 MUTATED | 7 | 3 | 1 |
ERBB3 WILD-TYPE | 42 | 117 | 23 |
P value = 0.0784 (Fisher's exact test), Q value = 0.52
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
ERBB3 MUTATED | 5 | 5 | 1 |
ERBB3 WILD-TYPE | 54 | 51 | 78 |
P value = 0.029 (Fisher's exact test), Q value = 0.39
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
ERBB3 MUTATED | 7 | 2 | 1 | 0 | 1 |
ERBB3 WILD-TYPE | 34 | 48 | 57 | 15 | 29 |
P value = 0.93 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
ERBB3 MUTATED | 4 | 4 | 3 |
ERBB3 WILD-TYPE | 65 | 53 | 55 |
P value = 0.334 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
ERBB3 MUTATED | 5 | 2 | 1 | 3 |
ERBB3 WILD-TYPE | 37 | 30 | 27 | 79 |
P value = 0.488 (Fisher's exact test), Q value = 0.86
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
SMAD4 MUTATED | 4 | 0 | 2 |
SMAD4 WILD-TYPE | 86 | 40 | 59 |
P value = 0.346 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
SMAD4 MUTATED | 2 | 0 | 3 | 0 | 0 | 2 |
SMAD4 WILD-TYPE | 48 | 32 | 33 | 36 | 7 | 31 |
P value = 0.573 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
SMAD4 MUTATED | 3 | 1 | 2 |
SMAD4 WILD-TYPE | 39 | 30 | 58 |
P value = 0.92 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
SMAD4 MUTATED | 2 | 2 | 1 | 1 | 0 |
SMAD4 WILD-TYPE | 25 | 38 | 31 | 17 | 16 |
P value = 0.515 (Fisher's exact test), Q value = 0.87
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
SMAD4 MUTATED | 0 | 2 | 3 | 2 |
SMAD4 WILD-TYPE | 37 | 63 | 46 | 40 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
SMAD4 MUTATED | 2 | 4 | 1 |
SMAD4 WILD-TYPE | 47 | 116 | 23 |
P value = 0.723 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
SMAD4 MUTATED | 2 | 1 | 4 |
SMAD4 WILD-TYPE | 57 | 55 | 75 |
P value = 0.599 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
SMAD4 MUTATED | 1 | 3 | 1 | 0 | 2 |
SMAD4 WILD-TYPE | 40 | 47 | 57 | 15 | 28 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
SMAD4 MUTATED | 3 | 2 | 2 |
SMAD4 WILD-TYPE | 66 | 55 | 56 |
P value = 0.945 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
SMAD4 MUTATED | 1 | 1 | 1 | 4 |
SMAD4 WILD-TYPE | 41 | 31 | 27 | 78 |
P value = 0.182 (Fisher's exact test), Q value = 0.71
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
TCTE1 MUTATED | 3 | 2 | 0 |
TCTE1 WILD-TYPE | 87 | 38 | 61 |
P value = 0.318 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
TCTE1 MUTATED | 0 | 2 | 1 | 2 | 0 | 0 |
TCTE1 WILD-TYPE | 50 | 30 | 35 | 34 | 7 | 33 |
P value = 0.312 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
TCTE1 MUTATED | 3 | 0 | 2 |
TCTE1 WILD-TYPE | 39 | 31 | 58 |
P value = 0.0428 (Fisher's exact test), Q value = 0.43
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
TCTE1 MUTATED | 1 | 0 | 1 | 3 | 0 |
TCTE1 WILD-TYPE | 26 | 40 | 31 | 15 | 16 |
P value = 0.0172 (Fisher's exact test), Q value = 0.34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
TCTE1 MUTATED | 0 | 1 | 0 | 4 |
TCTE1 WILD-TYPE | 37 | 64 | 49 | 38 |
P value = 0.405 (Fisher's exact test), Q value = 0.83
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
TCTE1 MUTATED | 0 | 4 | 1 |
TCTE1 WILD-TYPE | 49 | 116 | 23 |
P value = 0.0247 (Fisher's exact test), Q value = 0.39
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
TCTE1 MUTATED | 0 | 0 | 5 |
TCTE1 WILD-TYPE | 59 | 56 | 74 |
P value = 0.101 (Fisher's exact test), Q value = 0.58
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
TCTE1 MUTATED | 0 | 1 | 1 | 2 | 1 |
TCTE1 WILD-TYPE | 41 | 49 | 57 | 13 | 29 |
P value = 0.2 (Fisher's exact test), Q value = 0.71
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
TCTE1 MUTATED | 1 | 0 | 3 |
TCTE1 WILD-TYPE | 68 | 57 | 55 |
P value = 0.337 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
TCTE1 MUTATED | 0 | 0 | 0 | 4 |
TCTE1 WILD-TYPE | 42 | 32 | 28 | 78 |
P value = 0.862 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
NHS MUTATED | 6 | 3 | 3 |
NHS WILD-TYPE | 84 | 37 | 58 |
P value = 0.978 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
NHS MUTATED | 3 | 3 | 2 | 2 | 0 | 2 |
NHS WILD-TYPE | 47 | 29 | 34 | 34 | 7 | 31 |
P value = 0.642 (Fisher's exact test), Q value = 0.94
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
NHS MUTATED | 4 | 1 | 5 |
NHS WILD-TYPE | 38 | 30 | 55 |
P value = 0.926 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
NHS MUTATED | 2 | 2 | 3 | 2 | 1 |
NHS WILD-TYPE | 25 | 38 | 29 | 16 | 15 |
P value = 0.759 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
NHS MUTATED | 2 | 4 | 2 | 4 |
NHS WILD-TYPE | 35 | 61 | 47 | 38 |
P value = 0.276 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
NHS MUTATED | 3 | 6 | 3 |
NHS WILD-TYPE | 46 | 114 | 21 |
P value = 0.933 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
NHS MUTATED | 3 | 4 | 5 |
NHS WILD-TYPE | 56 | 52 | 74 |
P value = 0.831 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
NHS MUTATED | 3 | 3 | 3 | 0 | 3 |
NHS WILD-TYPE | 38 | 47 | 55 | 15 | 27 |
P value = 0.424 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
NHS MUTATED | 6 | 3 | 2 |
NHS WILD-TYPE | 63 | 54 | 56 |
P value = 0.434 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
NHS MUTATED | 3 | 1 | 0 | 7 |
NHS WILD-TYPE | 39 | 31 | 28 | 75 |
P value = 0.157 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
LIN9 MUTATED | 1 | 1 | 4 |
LIN9 WILD-TYPE | 89 | 39 | 57 |
P value = 0.374 (Fisher's exact test), Q value = 0.82
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
LIN9 MUTATED | 1 | 2 | 1 | 0 | 0 | 3 |
LIN9 WILD-TYPE | 49 | 30 | 35 | 36 | 7 | 30 |
P value = 0.69 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
LIN9 MUTATED | 1 | 2 | 4 |
LIN9 WILD-TYPE | 41 | 29 | 56 |
P value = 0.373 (Fisher's exact test), Q value = 0.82
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
LIN9 MUTATED | 0 | 3 | 1 | 1 | 2 |
LIN9 WILD-TYPE | 27 | 37 | 31 | 17 | 14 |
P value = 0.534 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
LIN9 MUTATED | 3 | 2 | 1 | 1 |
LIN9 WILD-TYPE | 34 | 63 | 48 | 41 |
P value = 0.869 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
LIN9 MUTATED | 1 | 5 | 1 |
LIN9 WILD-TYPE | 48 | 115 | 23 |
P value = 0.888 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
LIN9 MUTATED | 3 | 2 | 2 |
LIN9 WILD-TYPE | 56 | 54 | 77 |
P value = 0.269 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
LIN9 MUTATED | 0 | 2 | 4 | 1 | 0 |
LIN9 WILD-TYPE | 41 | 48 | 54 | 14 | 30 |
P value = 0.297 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
LIN9 MUTATED | 1 | 2 | 4 |
LIN9 WILD-TYPE | 68 | 55 | 54 |
P value = 0.893 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
LIN9 MUTATED | 1 | 2 | 1 | 3 |
LIN9 WILD-TYPE | 41 | 30 | 27 | 79 |
P value = 0.199 (Fisher's exact test), Q value = 0.71
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
C12ORF43 MUTATED | 2 | 2 | 0 |
C12ORF43 WILD-TYPE | 88 | 38 | 61 |
P value = 0.145 (Fisher's exact test), Q value = 0.67
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
C12ORF43 MUTATED | 0 | 1 | 1 | 1 | 1 | 0 |
C12ORF43 WILD-TYPE | 50 | 31 | 35 | 35 | 6 | 33 |
P value = 0.912 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
C12ORF43 MUTATED | 0 | 2 | 1 | 1 |
C12ORF43 WILD-TYPE | 37 | 63 | 48 | 41 |
P value = 0.456 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
C12ORF43 MUTATED | 0 | 4 | 0 |
C12ORF43 WILD-TYPE | 49 | 116 | 24 |
P value = 0.472 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
C12ORF43 MUTATED | 0 | 2 | 2 |
C12ORF43 WILD-TYPE | 59 | 54 | 77 |
P value = 0.204 (Fisher's exact test), Q value = 0.71
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
C12ORF43 MUTATED | 0 | 0 | 2 | 1 | 1 |
C12ORF43 WILD-TYPE | 41 | 50 | 56 | 14 | 29 |
P value = 0.292 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
C12ORF43 MUTATED | 0 | 1 | 2 |
C12ORF43 WILD-TYPE | 69 | 56 | 56 |
P value = 0.162 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
C12ORF43 MUTATED | 0 | 0 | 2 | 1 |
C12ORF43 WILD-TYPE | 42 | 32 | 26 | 81 |
P value = 0.923 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
MED1 MUTATED | 6 | 2 | 3 |
MED1 WILD-TYPE | 84 | 38 | 58 |
P value = 0.133 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
MED1 MUTATED | 0 | 1 | 3 | 3 | 0 | 4 |
MED1 WILD-TYPE | 50 | 31 | 33 | 33 | 7 | 29 |
P value = 0.169 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
MED1 MUTATED | 6 | 1 | 3 |
MED1 WILD-TYPE | 36 | 30 | 57 |
P value = 0.156 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
MED1 MUTATED | 4 | 2 | 1 | 3 | 0 |
MED1 WILD-TYPE | 23 | 38 | 31 | 15 | 16 |
P value = 0.235 (Fisher's exact test), Q value = 0.74
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
MED1 MUTATED | 1 | 4 | 1 | 5 |
MED1 WILD-TYPE | 36 | 61 | 48 | 37 |
P value = 0.103 (Fisher's exact test), Q value = 0.58
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
MED1 MUTATED | 0 | 9 | 2 |
MED1 WILD-TYPE | 49 | 111 | 22 |
P value = 0.187 (Fisher's exact test), Q value = 0.71
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
MED1 MUTATED | 1 | 3 | 7 |
MED1 WILD-TYPE | 58 | 53 | 72 |
P value = 0.239 (Fisher's exact test), Q value = 0.74
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
MED1 MUTATED | 0 | 4 | 4 | 0 | 3 |
MED1 WILD-TYPE | 41 | 46 | 54 | 15 | 27 |
P value = 0.507 (Fisher's exact test), Q value = 0.87
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
MED1 MUTATED | 3 | 2 | 5 |
MED1 WILD-TYPE | 66 | 55 | 53 |
P value = 0.122 (Fisher's exact test), Q value = 0.64
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
MED1 MUTATED | 0 | 1 | 3 | 6 |
MED1 WILD-TYPE | 42 | 31 | 25 | 76 |
P value = 0.199 (Fisher's exact test), Q value = 0.71
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
USP28 MUTATED | 2 | 2 | 0 |
USP28 WILD-TYPE | 88 | 38 | 61 |
P value = 0.541 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
USP28 MUTATED | 1 | 2 | 1 | 0 | 0 | 0 |
USP28 WILD-TYPE | 49 | 30 | 35 | 36 | 7 | 33 |
P value = 0.321 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
USP28 MUTATED | 0 | 0 | 3 |
USP28 WILD-TYPE | 42 | 31 | 57 |
P value = 0.91 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
USP28 MUTATED | 0 | 2 | 1 | 0 | 0 |
USP28 WILD-TYPE | 27 | 38 | 31 | 18 | 16 |
P value = 0.604 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
USP28 MUTATED | 0 | 1 | 1 | 2 |
USP28 WILD-TYPE | 37 | 64 | 48 | 40 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
USP28 MUTATED | 1 | 3 | 0 |
USP28 WILD-TYPE | 48 | 117 | 24 |
P value = 0.389 (Fisher's exact test), Q value = 0.83
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
USP28 MUTATED | 1 | 0 | 3 |
USP28 WILD-TYPE | 58 | 56 | 76 |
P value = 0.938 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
USP28 MUTATED | 1 | 1 | 2 | 0 | 0 |
USP28 WILD-TYPE | 40 | 49 | 56 | 15 | 30 |
P value = 0.202 (Fisher's exact test), Q value = 0.71
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
USP28 MUTATED | 1 | 0 | 3 |
USP28 WILD-TYPE | 68 | 57 | 55 |
P value = 0.822 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
USP28 MUTATED | 1 | 0 | 0 | 3 |
USP28 WILD-TYPE | 41 | 32 | 28 | 79 |
P value = 0.189 (Fisher's exact test), Q value = 0.71
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
IDS MUTATED | 4 | 2 | 0 |
IDS WILD-TYPE | 86 | 38 | 61 |
P value = 0.534 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
IDS MUTATED | 2 | 3 | 1 | 0 | 0 | 1 |
IDS WILD-TYPE | 48 | 29 | 35 | 36 | 7 | 32 |
P value = 0.248 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
IDS MUTATED | 0 | 2 | 3 |
IDS WILD-TYPE | 42 | 29 | 57 |
P value = 0.537 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
IDS MUTATED | 0 | 3 | 1 | 0 | 1 |
IDS WILD-TYPE | 27 | 37 | 31 | 18 | 15 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
IDS MUTATED | 1 | 3 | 2 | 1 |
IDS WILD-TYPE | 36 | 62 | 47 | 41 |
P value = 0.87 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
IDS MUTATED | 2 | 5 | 0 |
IDS WILD-TYPE | 47 | 115 | 24 |
P value = 0.493 (Fisher's exact test), Q value = 0.86
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
IDS MUTATED | 1 | 3 | 3 |
IDS WILD-TYPE | 58 | 53 | 76 |
P value = 0.222 (Fisher's exact test), Q value = 0.73
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
IDS MUTATED | 1 | 1 | 3 | 2 | 0 |
IDS WILD-TYPE | 40 | 49 | 55 | 13 | 30 |
P value = 0.438 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
IDS MUTATED | 1 | 3 | 3 |
IDS WILD-TYPE | 68 | 54 | 55 |
P value = 0.714 (Fisher's exact test), Q value = 0.97
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
IDS MUTATED | 2 | 2 | 0 | 3 |
IDS WILD-TYPE | 40 | 30 | 28 | 79 |
P value = 0.334 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
TRIM9 MUTATED | 6 | 1 | 1 |
TRIM9 WILD-TYPE | 84 | 39 | 60 |
P value = 0.786 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
TRIM9 MUTATED | 3 | 2 | 1 | 2 | 0 | 0 |
TRIM9 WILD-TYPE | 47 | 30 | 35 | 34 | 7 | 33 |
P value = 0.687 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
TRIM9 MUTATED | 1 | 2 | 4 |
TRIM9 WILD-TYPE | 41 | 29 | 56 |
P value = 0.88 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
TRIM9 MUTATED | 1 | 3 | 2 | 0 | 1 |
TRIM9 WILD-TYPE | 26 | 37 | 30 | 18 | 15 |
P value = 0.0904 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
TRIM9 MUTATED | 0 | 1 | 3 | 4 |
TRIM9 WILD-TYPE | 37 | 64 | 46 | 38 |
P value = 0.661 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
TRIM9 MUTATED | 3 | 4 | 1 |
TRIM9 WILD-TYPE | 46 | 116 | 23 |
P value = 0.544 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
TRIM9 MUTATED | 2 | 1 | 5 |
TRIM9 WILD-TYPE | 57 | 55 | 74 |
P value = 0.0378 (Fisher's exact test), Q value = 0.39
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
TRIM9 MUTATED | 3 | 1 | 0 | 2 | 2 |
TRIM9 WILD-TYPE | 38 | 49 | 58 | 13 | 28 |
P value = 0.565 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
TRIM9 MUTATED | 4 | 1 | 2 |
TRIM9 WILD-TYPE | 65 | 56 | 56 |
P value = 0.358 (Fisher's exact test), Q value = 0.81
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
TRIM9 MUTATED | 3 | 0 | 0 | 4 |
TRIM9 WILD-TYPE | 39 | 32 | 28 | 78 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
SEMA4B MUTATED | 4 | 1 | 2 |
SEMA4B WILD-TYPE | 86 | 39 | 59 |
P value = 0.891 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
SEMA4B MUTATED | 1 | 2 | 1 | 2 | 0 | 1 |
SEMA4B WILD-TYPE | 49 | 30 | 35 | 34 | 7 | 32 |
P value = 0.368 (Fisher's exact test), Q value = 0.82
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
SEMA4B MUTATED | 0 | 3 | 1 | 3 |
SEMA4B WILD-TYPE | 37 | 62 | 48 | 39 |
P value = 0.87 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
SEMA4B MUTATED | 1 | 5 | 1 |
SEMA4B WILD-TYPE | 48 | 115 | 23 |
P value = 0.0607 (Fisher's exact test), Q value = 0.48
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
SEMA4B MUTATED | 1 | 0 | 6 |
SEMA4B WILD-TYPE | 58 | 56 | 73 |
P value = 0.287 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
SEMA4B MUTATED | 0 | 2 | 2 | 0 | 3 |
SEMA4B WILD-TYPE | 41 | 48 | 56 | 15 | 27 |
P value = 0.389 (Fisher's exact test), Q value = 0.83
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
SEMA4B MUTATED | 2 | 1 | 4 |
SEMA4B WILD-TYPE | 67 | 56 | 54 |
P value = 0.129 (Fisher's exact test), Q value = 0.64
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
SEMA4B MUTATED | 0 | 0 | 1 | 6 |
SEMA4B WILD-TYPE | 42 | 32 | 27 | 76 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
ARHGAP4 MUTATED | 3 | 1 | 2 |
ARHGAP4 WILD-TYPE | 87 | 39 | 59 |
P value = 0.686 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
ARHGAP4 MUTATED | 1 | 2 | 1 | 2 | 0 | 0 |
ARHGAP4 WILD-TYPE | 49 | 30 | 35 | 34 | 7 | 33 |
P value = 0.852 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
ARHGAP4 MUTATED | 1 | 1 | 3 |
ARHGAP4 WILD-TYPE | 41 | 30 | 57 |
P value = 0.686 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
ARHGAP4 MUTATED | 2 | 1 | 2 | 0 | 0 |
ARHGAP4 WILD-TYPE | 25 | 39 | 30 | 18 | 16 |
P value = 0.346 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
ARHGAP4 MUTATED | 0 | 2 | 1 | 3 |
ARHGAP4 WILD-TYPE | 37 | 63 | 48 | 39 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
ARHGAP4 MUTATED | 1 | 4 | 1 |
ARHGAP4 WILD-TYPE | 48 | 116 | 23 |
P value = 0.509 (Fisher's exact test), Q value = 0.87
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
ARHGAP4 MUTATED | 1 | 1 | 4 |
ARHGAP4 WILD-TYPE | 58 | 55 | 75 |
P value = 0.228 (Fisher's exact test), Q value = 0.73
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
ARHGAP4 MUTATED | 1 | 1 | 2 | 2 | 0 |
ARHGAP4 WILD-TYPE | 40 | 49 | 56 | 13 | 30 |
P value = 0.69 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
ARHGAP4 MUTATED | 1 | 2 | 1 |
ARHGAP4 WILD-TYPE | 68 | 55 | 57 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
ARHGAP4 MUTATED | 1 | 1 | 0 | 2 |
ARHGAP4 WILD-TYPE | 41 | 31 | 28 | 80 |
P value = 0.449 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
POU2F1 MUTATED | 2 | 1 | 0 |
POU2F1 WILD-TYPE | 88 | 39 | 61 |
P value = 0.266 (Fisher's exact test), Q value = 0.77
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
POU2F1 MUTATED | 0 | 1 | 2 | 0 | 0 | 0 |
POU2F1 WILD-TYPE | 50 | 31 | 34 | 36 | 7 | 33 |
P value = 0.614 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
POU2F1 MUTATED | 0 | 2 | 0 | 1 |
POU2F1 WILD-TYPE | 37 | 63 | 49 | 41 |
P value = 0.701 (Fisher's exact test), Q value = 0.96
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
POU2F1 MUTATED | 0 | 3 | 0 |
POU2F1 WILD-TYPE | 49 | 117 | 24 |
P value = 0.627 (Fisher's exact test), Q value = 0.92
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
POU2F1 MUTATED | 0 | 1 | 2 |
POU2F1 WILD-TYPE | 59 | 55 | 77 |
P value = 0.488 (Fisher's exact test), Q value = 0.86
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
POU2F1 MUTATED | 0 | 0 | 2 | 0 | 1 |
POU2F1 WILD-TYPE | 41 | 50 | 56 | 15 | 29 |
P value = 0.294 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
POU2F1 MUTATED | 0 | 1 | 2 |
POU2F1 WILD-TYPE | 69 | 56 | 56 |
P value = 0.162 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
POU2F1 MUTATED | 0 | 0 | 2 | 1 |
POU2F1 WILD-TYPE | 42 | 32 | 26 | 81 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
IFNGR1 MUTATED | 3 | 1 | 2 |
IFNGR1 WILD-TYPE | 87 | 39 | 59 |
P value = 0.742 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
IFNGR1 MUTATED | 2 | 2 | 0 | 1 | 0 | 1 |
IFNGR1 WILD-TYPE | 48 | 30 | 36 | 35 | 7 | 32 |
P value = 0.603 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
IFNGR1 MUTATED | 0 | 1 | 2 |
IFNGR1 WILD-TYPE | 42 | 30 | 58 |
P value = 0.911 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
IFNGR1 MUTATED | 0 | 2 | 1 | 0 | 0 |
IFNGR1 WILD-TYPE | 27 | 38 | 31 | 18 | 16 |
P value = 0.843 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
IFNGR1 MUTATED | 2 | 2 | 1 | 1 |
IFNGR1 WILD-TYPE | 35 | 63 | 48 | 41 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
IFNGR1 MUTATED | 2 | 4 | 0 |
IFNGR1 WILD-TYPE | 47 | 116 | 24 |
P value = 0.325 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
IFNGR1 MUTATED | 3 | 0 | 3 |
IFNGR1 WILD-TYPE | 56 | 56 | 76 |
P value = 0.0342 (Fisher's exact test), Q value = 0.39
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
IFNGR1 MUTATED | 1 | 3 | 0 | 2 | 0 |
IFNGR1 WILD-TYPE | 40 | 47 | 58 | 13 | 30 |
P value = 0.0531 (Fisher's exact test), Q value = 0.47
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
IFNGR1 MUTATED | 5 | 0 | 1 |
IFNGR1 WILD-TYPE | 64 | 57 | 57 |
P value = 0.784 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
IFNGR1 MUTATED | 2 | 0 | 1 | 3 |
IFNGR1 WILD-TYPE | 40 | 32 | 27 | 79 |
P value = 0.214 (Fisher's exact test), Q value = 0.73
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
IGFN1 MUTATED | 7 | 0 | 4 |
IGFN1 WILD-TYPE | 83 | 40 | 57 |
P value = 0.38 (Fisher's exact test), Q value = 0.82
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
IGFN1 MUTATED | 2 | 4 | 2 | 1 | 1 | 1 |
IGFN1 WILD-TYPE | 48 | 28 | 34 | 35 | 6 | 32 |
P value = 0.685 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
IGFN1 MUTATED | 1 | 2 | 4 |
IGFN1 WILD-TYPE | 41 | 29 | 56 |
P value = 0.7 (Fisher's exact test), Q value = 0.96
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
IGFN1 MUTATED | 2 | 2 | 3 | 0 | 0 |
IGFN1 WILD-TYPE | 25 | 38 | 29 | 18 | 16 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
IGFN1 MUTATED | 2 | 4 | 3 | 2 |
IGFN1 WILD-TYPE | 35 | 61 | 46 | 40 |
P value = 0.593 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
IGFN1 MUTATED | 3 | 8 | 0 |
IGFN1 WILD-TYPE | 46 | 112 | 24 |
P value = 0.354 (Fisher's exact test), Q value = 0.81
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
IGFN1 MUTATED | 4 | 1 | 6 |
IGFN1 WILD-TYPE | 55 | 55 | 73 |
P value = 0.966 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
IGFN1 MUTATED | 3 | 3 | 3 | 1 | 1 |
IGFN1 WILD-TYPE | 38 | 47 | 55 | 14 | 29 |
P value = 0.331 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
IGFN1 MUTATED | 5 | 1 | 4 |
IGFN1 WILD-TYPE | 64 | 56 | 54 |
P value = 0.849 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
IGFN1 MUTATED | 2 | 1 | 1 | 6 |
IGFN1 WILD-TYPE | 40 | 31 | 27 | 76 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
RPGR MUTATED | 4 | 2 | 3 |
RPGR WILD-TYPE | 86 | 38 | 58 |
P value = 0.923 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
RPGR MUTATED | 3 | 2 | 1 | 1 | 0 | 2 |
RPGR WILD-TYPE | 47 | 30 | 35 | 35 | 7 | 31 |
P value = 0.688 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
RPGR MUTATED | 1 | 2 | 4 |
RPGR WILD-TYPE | 41 | 29 | 56 |
P value = 0.404 (Fisher's exact test), Q value = 0.83
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
RPGR MUTATED | 0 | 3 | 1 | 2 | 1 |
RPGR WILD-TYPE | 27 | 37 | 31 | 16 | 15 |
P value = 0.393 (Fisher's exact test), Q value = 0.83
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
RPGR MUTATED | 0 | 3 | 4 | 2 |
RPGR WILD-TYPE | 37 | 62 | 45 | 40 |
P value = 0.879 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
RPGR MUTATED | 3 | 5 | 1 |
RPGR WILD-TYPE | 46 | 115 | 23 |
P value = 0.916 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
RPGR MUTATED | 3 | 3 | 3 |
RPGR WILD-TYPE | 56 | 53 | 76 |
P value = 0.952 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
RPGR MUTATED | 2 | 2 | 4 | 0 | 1 |
RPGR WILD-TYPE | 39 | 48 | 54 | 15 | 29 |
P value = 0.761 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
RPGR MUTATED | 3 | 2 | 4 |
RPGR WILD-TYPE | 66 | 55 | 54 |
P value = 0.803 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
RPGR MUTATED | 3 | 2 | 1 | 3 |
RPGR WILD-TYPE | 39 | 30 | 27 | 79 |
P value = 0.672 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
CASP8 MUTATED | 3 | 2 | 4 |
CASP8 WILD-TYPE | 87 | 38 | 57 |
P value = 0.477 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
CASP8 MUTATED | 1 | 1 | 3 | 2 | 1 | 1 |
CASP8 WILD-TYPE | 49 | 31 | 33 | 34 | 6 | 32 |
P value = 0.517 (Fisher's exact test), Q value = 0.87
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
CASP8 MUTATED | 2 | 2 | 1 |
CASP8 WILD-TYPE | 40 | 29 | 59 |
P value = 0.167 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
CASP8 MUTATED | 1 | 0 | 2 | 2 | 0 |
CASP8 WILD-TYPE | 26 | 40 | 30 | 16 | 16 |
P value = 0.219 (Fisher's exact test), Q value = 0.73
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
CASP8 MUTATED | 0 | 5 | 1 | 3 |
CASP8 WILD-TYPE | 37 | 60 | 48 | 39 |
P value = 0.463 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
CASP8 MUTATED | 1 | 6 | 2 |
CASP8 WILD-TYPE | 48 | 114 | 22 |
P value = 0.57 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
CASP8 MUTATED | 3 | 1 | 5 |
CASP8 WILD-TYPE | 56 | 55 | 74 |
P value = 0.448 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
CASP8 MUTATED | 0 | 3 | 3 | 1 | 2 |
CASP8 WILD-TYPE | 41 | 47 | 55 | 14 | 28 |
P value = 0.123 (Fisher's exact test), Q value = 0.64
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
CASP8 MUTATED | 4 | 0 | 4 |
CASP8 WILD-TYPE | 65 | 57 | 54 |
P value = 0.435 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
CASP8 MUTATED | 1 | 0 | 1 | 6 |
CASP8 WILD-TYPE | 41 | 32 | 27 | 76 |
P value = 0.816 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
GAS6 MUTATED | 2 | 0 | 2 |
GAS6 WILD-TYPE | 88 | 40 | 59 |
P value = 0.11 (Fisher's exact test), Q value = 0.6
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
GAS6 MUTATED | 0 | 0 | 3 | 1 | 0 | 0 |
GAS6 WILD-TYPE | 50 | 32 | 33 | 35 | 7 | 33 |
P value = 0.458 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
GAS6 MUTATED | 2 | 0 | 1 |
GAS6 WILD-TYPE | 40 | 31 | 59 |
P value = 0.281 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
GAS6 MUTATED | 2 | 0 | 1 | 0 | 0 |
GAS6 WILD-TYPE | 25 | 40 | 31 | 18 | 16 |
P value = 0.767 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
GAS6 MUTATED | 1 | 2 | 0 | 1 |
GAS6 WILD-TYPE | 36 | 63 | 49 | 41 |
P value = 0.454 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
GAS6 MUTATED | 0 | 4 | 0 |
GAS6 WILD-TYPE | 49 | 116 | 24 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
GAS6 MUTATED | 1 | 1 | 2 |
GAS6 WILD-TYPE | 58 | 55 | 77 |
P value = 0.389 (Fisher's exact test), Q value = 0.83
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
GAS6 MUTATED | 0 | 3 | 1 | 0 | 0 |
GAS6 WILD-TYPE | 41 | 47 | 57 | 15 | 30 |
P value = 0.292 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
GAS6 MUTATED | 0 | 1 | 2 |
GAS6 WILD-TYPE | 69 | 56 | 56 |
P value = 0.756 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
GAS6 MUTATED | 0 | 1 | 0 | 2 |
GAS6 WILD-TYPE | 42 | 31 | 28 | 80 |
P value = 0.605 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
ABCD1 MUTATED | 2 | 2 | 1 |
ABCD1 WILD-TYPE | 88 | 38 | 60 |
P value = 0.925 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
ABCD1 MUTATED | 1 | 1 | 2 | 2 | 0 | 1 |
ABCD1 WILD-TYPE | 49 | 31 | 34 | 34 | 7 | 32 |
P value = 0.573 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
ABCD1 MUTATED | 3 | 1 | 2 |
ABCD1 WILD-TYPE | 39 | 30 | 58 |
P value = 0.592 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
ABCD1 MUTATED | 1 | 1 | 2 | 2 | 0 |
ABCD1 WILD-TYPE | 26 | 39 | 30 | 16 | 16 |
P value = 0.179 (Fisher's exact test), Q value = 0.71
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
ABCD1 MUTATED | 1 | 1 | 1 | 4 |
ABCD1 WILD-TYPE | 36 | 64 | 48 | 38 |
P value = 0.0338 (Fisher's exact test), Q value = 0.39
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
ABCD1 MUTATED | 0 | 4 | 3 |
ABCD1 WILD-TYPE | 49 | 116 | 21 |
P value = 0.489 (Fisher's exact test), Q value = 0.86
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
ABCD1 MUTATED | 1 | 3 | 3 |
ABCD1 WILD-TYPE | 58 | 53 | 76 |
P value = 0.52 (Fisher's exact test), Q value = 0.87
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
ABCD1 MUTATED | 0 | 2 | 3 | 0 | 2 |
ABCD1 WILD-TYPE | 41 | 48 | 55 | 15 | 28 |
P value = 0.0573 (Fisher's exact test), Q value = 0.48
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
ABCD1 MUTATED | 0 | 4 | 3 |
ABCD1 WILD-TYPE | 69 | 53 | 55 |
P value = 0.376 (Fisher's exact test), Q value = 0.82
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
ABCD1 MUTATED | 0 | 1 | 2 | 4 |
ABCD1 WILD-TYPE | 42 | 31 | 26 | 78 |
P value = 0.683 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
RPAP1 MUTATED | 3 | 0 | 1 |
RPAP1 WILD-TYPE | 87 | 40 | 60 |
P value = 0.608 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
RPAP1 MUTATED | 1 | 1 | 2 | 0 | 0 | 0 |
RPAP1 WILD-TYPE | 49 | 31 | 34 | 36 | 7 | 33 |
P value = 0.601 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
RPAP1 MUTATED | 0 | 1 | 1 | 2 |
RPAP1 WILD-TYPE | 37 | 64 | 48 | 40 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
RPAP1 MUTATED | 1 | 3 | 0 |
RPAP1 WILD-TYPE | 48 | 117 | 24 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
RPAP1 MUTATED | 1 | 1 | 2 |
RPAP1 WILD-TYPE | 58 | 55 | 77 |
P value = 0.742 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
RPAP1 MUTATED | 0 | 2 | 1 | 0 | 1 |
RPAP1 WILD-TYPE | 41 | 48 | 57 | 15 | 29 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
RPAP1 MUTATED | 2 | 1 | 1 |
RPAP1 WILD-TYPE | 67 | 56 | 57 |
P value = 0.904 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
RPAP1 MUTATED | 1 | 0 | 1 | 2 |
RPAP1 WILD-TYPE | 41 | 32 | 27 | 80 |
P value = 0.199 (Fisher's exact test), Q value = 0.71
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
HIST1H4E MUTATED | 2 | 2 | 0 |
HIST1H4E WILD-TYPE | 88 | 38 | 61 |
P value = 0.734 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
HIST1H4E MUTATED | 0 | 1 | 1 | 1 | 0 | 1 |
HIST1H4E WILD-TYPE | 50 | 31 | 35 | 35 | 7 | 32 |
P value = 0.397 (Fisher's exact test), Q value = 0.83
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
HIST1H4E MUTATED | 0 | 3 | 0 | 1 |
HIST1H4E WILD-TYPE | 37 | 62 | 49 | 41 |
P value = 0.308 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
HIST1H4E MUTATED | 0 | 3 | 1 |
HIST1H4E WILD-TYPE | 49 | 117 | 23 |
P value = 0.474 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
HIST1H4E MUTATED | 0 | 2 | 2 |
HIST1H4E WILD-TYPE | 59 | 54 | 77 |
P value = 0.831 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
HIST1H4E MUTATED | 0 | 1 | 2 | 0 | 1 |
HIST1H4E WILD-TYPE | 41 | 49 | 56 | 15 | 29 |
P value = 0.401 (Fisher's exact test), Q value = 0.83
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
HIST1H4E MUTATED | 1 | 2 | 0 |
HIST1H4E WILD-TYPE | 68 | 55 | 58 |
P value = 0.38 (Fisher's exact test), Q value = 0.82
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
HIST1H4E MUTATED | 0 | 1 | 1 | 1 |
HIST1H4E WILD-TYPE | 42 | 31 | 27 | 81 |
P value = 0.681 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
NLRC5 MUTATED | 4 | 2 | 1 |
NLRC5 WILD-TYPE | 86 | 38 | 60 |
P value = 0.274 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
NLRC5 MUTATED | 4 | 2 | 0 | 0 | 0 | 1 |
NLRC5 WILD-TYPE | 46 | 30 | 36 | 36 | 7 | 32 |
P value = 0.203 (Fisher's exact test), Q value = 0.71
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 42 | 31 | 60 |
NLRC5 MUTATED | 0 | 2 | 4 |
NLRC5 WILD-TYPE | 42 | 29 | 56 |
P value = 0.736 (Fisher's exact test), Q value = 0.99
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 27 | 40 | 32 | 18 | 16 |
NLRC5 MUTATED | 0 | 2 | 2 | 1 | 1 |
NLRC5 WILD-TYPE | 27 | 38 | 30 | 17 | 15 |
P value = 0.68 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
NLRC5 MUTATED | 2 | 1 | 2 | 2 |
NLRC5 WILD-TYPE | 35 | 64 | 47 | 40 |
P value = 0.196 (Fisher's exact test), Q value = 0.71
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
NLRC5 MUTATED | 4 | 3 | 0 |
NLRC5 WILD-TYPE | 45 | 117 | 24 |
P value = 0.138 (Fisher's exact test), Q value = 0.66
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
NLRC5 MUTATED | 4 | 0 | 3 |
NLRC5 WILD-TYPE | 55 | 56 | 76 |
P value = 0.277 (Fisher's exact test), Q value = 0.78
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
NLRC5 MUTATED | 3 | 0 | 2 | 1 | 1 |
NLRC5 WILD-TYPE | 38 | 50 | 56 | 14 | 29 |
P value = 0.566 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
NLRC5 MUTATED | 4 | 1 | 2 |
NLRC5 WILD-TYPE | 65 | 56 | 56 |
P value = 0.161 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
NLRC5 MUTATED | 4 | 0 | 1 | 2 |
NLRC5 WILD-TYPE | 38 | 32 | 27 | 80 |
P value = 0.0291 (Fisher's exact test), Q value = 0.39
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 90 | 40 | 61 |
DDX41 MUTATED | 0 | 1 | 4 |
DDX41 WILD-TYPE | 90 | 39 | 57 |
P value = 0.115 (Fisher's exact test), Q value = 0.62
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
DDX41 MUTATED | 0 | 3 | 0 | 1 | 0 | 1 |
DDX41 WILD-TYPE | 50 | 29 | 36 | 35 | 7 | 32 |
P value = 0.567 (Fisher's exact test), Q value = 0.89
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
DDX41 MUTATED | 1 | 3 | 0 | 1 |
DDX41 WILD-TYPE | 36 | 62 | 49 | 41 |
P value = 0.402 (Fisher's exact test), Q value = 0.83
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
DDX41 MUTATED | 0 | 4 | 1 |
DDX41 WILD-TYPE | 49 | 116 | 23 |
P value = 0.331 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
DDX41 MUTATED | 0 | 2 | 3 |
DDX41 WILD-TYPE | 59 | 54 | 76 |
P value = 0.779 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
DDX41 MUTATED | 0 | 2 | 2 | 0 | 1 |
DDX41 WILD-TYPE | 41 | 48 | 56 | 15 | 29 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
DDX41 MUTATED | 2 | 1 | 1 |
DDX41 WILD-TYPE | 67 | 56 | 57 |
P value = 0.546 (Fisher's exact test), Q value = 0.88
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
DDX41 MUTATED | 0 | 1 | 0 | 3 |
DDX41 WILD-TYPE | 42 | 31 | 28 | 79 |
P value = 0.0711 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 50 | 32 | 36 | 36 | 7 | 33 |
MCM7 MUTATED | 0 | 0 | 0 | 1 | 1 | 1 |
MCM7 WILD-TYPE | 50 | 32 | 36 | 35 | 6 | 32 |
P value = 0.616 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 37 | 65 | 49 | 42 |
MCM7 MUTATED | 0 | 2 | 0 | 1 |
MCM7 WILD-TYPE | 37 | 63 | 49 | 41 |
P value = 0.467 (Fisher's exact test), Q value = 0.85
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 49 | 120 | 24 |
MCM7 MUTATED | 0 | 2 | 1 |
MCM7 WILD-TYPE | 49 | 118 | 23 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 59 | 56 | 79 |
MCM7 MUTATED | 1 | 1 | 1 |
MCM7 WILD-TYPE | 58 | 55 | 78 |
P value = 0.491 (Fisher's exact test), Q value = 0.86
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 41 | 50 | 58 | 15 | 30 |
MCM7 MUTATED | 0 | 0 | 2 | 0 | 1 |
MCM7 WILD-TYPE | 41 | 50 | 56 | 15 | 29 |
P value = 0.0598 (Fisher's exact test), Q value = 0.48
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 57 | 58 |
MCM7 MUTATED | 0 | 0 | 3 |
MCM7 WILD-TYPE | 69 | 57 | 55 |
P value = 0.163 (Fisher's exact test), Q value = 0.69
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 42 | 32 | 28 | 82 |
MCM7 MUTATED | 0 | 0 | 2 | 1 |
MCM7 WILD-TYPE | 42 | 32 | 26 | 81 |
-
Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline
-
Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/CESC-TP/15165547/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/CESC-TP/15095897/CESC-TP.transferedmergedcluster.txt
-
Number of patients = 194
-
Number of significantly mutated genes = 38
-
Number of Molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.