This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 82 arm-level events and 10 molecular subtypes across 184 patients, 253 significant findings detected with P value < 0.05 and Q value < 0.25.
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2p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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3q gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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4q gain cnv correlated to 'RPPA_CHIERARCHICAL'.
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5p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6p gain cnv correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6q gain cnv correlated to 'RPPA_CNMF'.
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9p gain cnv correlated to 'RPPA_CHIERARCHICAL'.
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9q gain cnv correlated to 'MIRSEQ_CHIERARCHICAL'.
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10p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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10q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11q gain cnv correlated to 'MIRSEQ_CNMF'.
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12p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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13q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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14q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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16p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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16q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17p gain cnv correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.
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18p gain cnv correlated to 'MIRSEQ_CNMF'.
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19p gain cnv correlated to 'RPPA_CNMF'.
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19q gain cnv correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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20p gain cnv correlated to 'CN_CNMF'.
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20q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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22q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xq gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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1p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1q loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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2p loss cnv correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.
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2q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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3p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4p loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.
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4q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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5p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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8p loss cnv correlated to 'CN_CNMF'.
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10p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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12p loss cnv correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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13q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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14q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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15q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18q loss cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19p loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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21q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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22q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xp loss cnv correlated to 'CN_CNMF'.
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xq loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
22q gain | 31 (17%) | 153 |
2e-05 (0.000607) |
1e-05 (0.000456) |
0.00173 (0.0159) |
0.00067 (0.00785) |
2e-05 (0.000607) |
1e-05 (0.000456) |
2e-05 (0.000607) |
2e-05 (0.000607) |
1e-05 (0.000456) |
2e-05 (0.000607) |
14q loss | 45 (24%) | 139 |
0.00081 (0.00863) |
0.00543 (0.0359) |
0.0195 (0.0906) |
0.00271 (0.0209) |
0.00117 (0.0116) |
0.019 (0.089) |
0.0284 (0.113) |
0.00267 (0.0209) |
0.0362 (0.129) |
0.00125 (0.0119) |
12p gain | 58 (32%) | 126 |
0.023 (0.0992) |
0.00408 (0.0288) |
0.041 (0.141) |
0.0577 (0.174) |
0.0024 (0.0201) |
0.00288 (0.0217) |
0.00569 (0.0365) |
0.00301 (0.0222) |
0.00306 (0.0224) |
0.0103 (0.0589) |
16q gain | 38 (21%) | 146 |
0.00075 (0.00831) |
0.0272 (0.11) |
0.155 (0.327) |
0.0169 (0.0821) |
0.00859 (0.0514) |
0.014 (0.0733) |
0.0124 (0.0667) |
0.00681 (0.042) |
0.00279 (0.0212) |
0.00693 (0.0424) |
20q gain | 115 (62%) | 69 |
0.0001 (0.00178) |
0.00029 (0.00403) |
0.027 (0.11) |
0.054 (0.167) |
0.00176 (0.016) |
0.00218 (0.0187) |
0.00046 (0.00563) |
0.00076 (0.00831) |
0.00556 (0.0362) |
8e-05 (0.00146) |
16q loss | 53 (29%) | 131 |
1e-05 (0.000456) |
4e-05 (0.000911) |
0.181 (0.369) |
0.0284 (0.113) |
7e-05 (0.00137) |
2e-05 (0.000607) |
1e-05 (0.000456) |
3e-05 (0.000745) |
1e-05 (0.000456) |
1e-05 (0.000456) |
5p gain | 76 (41%) | 108 |
6e-05 (0.0012) |
0.0272 (0.11) |
0.374 (0.571) |
0.131 (0.291) |
0.0295 (0.115) |
0.0115 (0.0639) |
0.0135 (0.0713) |
0.0334 (0.123) |
0.0499 (0.162) |
0.0159 (0.0794) |
13q gain | 43 (23%) | 141 |
0.00273 (0.0209) |
2e-05 (0.000607) |
0.0959 (0.238) |
0.112 (0.263) |
1e-05 (0.000456) |
1e-05 (0.000456) |
1e-05 (0.000456) |
3e-05 (0.000745) |
0.00014 (0.00239) |
1e-05 (0.000456) |
1p loss | 38 (21%) | 146 |
0.00924 (0.0541) |
0.0246 (0.105) |
0.622 (0.767) |
0.876 (0.928) |
0.0215 (0.0966) |
0.0381 (0.133) |
0.0208 (0.0944) |
0.0318 (0.12) |
0.00978 (0.0561) |
0.0455 (0.151) |
3p loss | 93 (51%) | 91 |
2e-05 (0.000607) |
6e-05 (0.0012) |
0.132 (0.291) |
0.0867 (0.224) |
1e-05 (0.000456) |
1e-05 (0.000456) |
3e-05 (0.000745) |
1e-05 (0.000456) |
0.00116 (0.0116) |
1e-05 (0.000456) |
5p loss | 46 (25%) | 138 |
0.00026 (0.00368) |
1e-05 (0.000456) |
0.108 (0.258) |
0.0523 (0.164) |
5e-05 (0.00108) |
8e-05 (0.00146) |
6e-05 (0.0012) |
4e-05 (0.000911) |
0.00023 (0.00337) |
3e-05 (0.000745) |
10p loss | 50 (27%) | 134 |
0.00205 (0.0183) |
0.00446 (0.0313) |
0.398 (0.587) |
0.478 (0.657) |
0.0231 (0.0992) |
0.0142 (0.0735) |
0.00221 (0.0187) |
0.0075 (0.0456) |
0.0134 (0.0711) |
0.00267 (0.0209) |
10q loss | 49 (27%) | 135 |
8e-05 (0.00146) |
0.00092 (0.00967) |
0.455 (0.636) |
0.158 (0.332) |
0.00496 (0.0331) |
0.00219 (0.0187) |
0.00145 (0.0137) |
0.00245 (0.0203) |
0.0164 (0.08) |
0.00163 (0.0152) |
12p loss | 33 (18%) | 151 |
0.0982 (0.241) |
0.00095 (0.00986) |
0.374 (0.571) |
0.021 (0.0948) |
0.00075 (0.00831) |
0.00074 (0.00831) |
0.00262 (0.0209) |
0.00213 (0.0186) |
0.014 (0.0733) |
0.00033 (0.00436) |
16p loss | 54 (29%) | 130 |
0.00039 (0.005) |
0.00016 (0.00268) |
0.978 (0.996) |
0.686 (0.806) |
0.00124 (0.0119) |
0.00017 (0.00279) |
0.00013 (0.00227) |
0.00031 (0.00424) |
0.00025 (0.0036) |
0.00018 (0.00284) |
18p loss | 71 (39%) | 113 |
0.0119 (0.0657) |
0.00101 (0.0102) |
0.609 (0.76) |
0.481 (0.658) |
0.00368 (0.0264) |
0.00481 (0.0326) |
0.00101 (0.0102) |
0.023 (0.0992) |
0.0249 (0.105) |
0.00575 (0.0366) |
22q loss | 72 (39%) | 112 |
4e-05 (0.000911) |
3e-05 (0.000745) |
0.154 (0.326) |
0.114 (0.265) |
0.00043 (0.00542) |
0.00021 (0.00313) |
5e-05 (0.00108) |
0.0002 (0.00304) |
1e-05 (0.000456) |
3e-05 (0.000745) |
12q loss | 31 (17%) | 153 |
0.167 (0.35) |
0.0027 (0.0209) |
0.54 (0.709) |
0.0594 (0.176) |
0.0076 (0.0458) |
0.00564 (0.0364) |
0.0256 (0.107) |
0.012 (0.0657) |
0.00874 (0.0516) |
0.00633 (0.0396) |
17p loss | 71 (39%) | 113 |
0.00269 (0.0209) |
0.0002 (0.00304) |
0.544 (0.71) |
0.279 (0.491) |
0.00033 (0.00436) |
0.00071 (0.0082) |
2e-05 (0.000607) |
0.00123 (0.0119) |
0.0625 (0.18) |
0.00018 (0.00284) |
18q loss | 102 (55%) | 82 |
0.0957 (0.238) |
0.0117 (0.0647) |
0.381 (0.577) |
0.79 (0.88) |
0.0152 (0.0776) |
0.0271 (0.11) |
0.0223 (0.0984) |
0.00213 (0.0186) |
0.0472 (0.156) |
0.00039 (0.005) |
xq loss | 40 (22%) | 144 |
0.0154 (0.0777) |
0.0278 (0.112) |
0.0612 (0.177) |
0.0259 (0.107) |
0.0423 (0.142) |
0.0666 (0.188) |
0.118 (0.27) |
0.00249 (0.0204) |
0.0415 (0.141) |
0.0113 (0.0634) |
14q gain | 48 (26%) | 136 |
0.0359 (0.129) |
0.0851 (0.222) |
0.246 (0.455) |
0.229 (0.435) |
0.016 (0.0794) |
0.023 (0.0992) |
0.0378 (0.133) |
0.0357 (0.129) |
0.14 (0.304) |
0.0537 (0.167) |
16p gain | 41 (22%) | 143 |
0.0037 (0.0264) |
0.0969 (0.239) |
0.316 (0.519) |
0.145 (0.314) |
0.0361 (0.129) |
0.00341 (0.0247) |
0.0259 (0.107) |
0.036 (0.129) |
0.0827 (0.217) |
0.0573 (0.174) |
xq gain | 38 (21%) | 146 |
0.0436 (0.146) |
0.0291 (0.114) |
0.778 (0.873) |
0.176 (0.364) |
0.0369 (0.13) |
0.054 (0.167) |
0.011 (0.0624) |
0.0275 (0.111) |
0.055 (0.169) |
0.0688 (0.191) |
11q loss | 58 (32%) | 126 |
0.00049 (0.00591) |
0.0423 (0.142) |
0.302 (0.511) |
0.818 (0.899) |
0.0291 (0.114) |
0.0217 (0.0968) |
0.0153 (0.0776) |
0.132 (0.291) |
0.0776 (0.209) |
0.0686 (0.191) |
21q loss | 106 (58%) | 78 |
0.0316 (0.12) |
0.00599 (0.0378) |
0.134 (0.293) |
0.0981 (0.241) |
0.0321 (0.121) |
0.0993 (0.243) |
0.0204 (0.0936) |
0.146 (0.315) |
0.0419 (0.142) |
0.0862 (0.224) |
2p gain | 61 (33%) | 123 |
0.0124 (0.0667) |
0.0313 (0.12) |
0.179 (0.367) |
0.0906 (0.232) |
0.439 (0.628) |
0.091 (0.232) |
0.0365 (0.129) |
0.341 (0.544) |
0.00294 (0.0219) |
0.502 (0.676) |
15q loss | 57 (31%) | 127 |
0.286 (0.497) |
0.0314 (0.12) |
0.291 (0.5) |
0.321 (0.523) |
0.0257 (0.107) |
0.0504 (0.162) |
0.0966 (0.239) |
0.00554 (0.0362) |
0.326 (0.527) |
0.00079 (0.00852) |
19q loss | 52 (28%) | 132 |
0.00456 (0.0314) |
0.111 (0.262) |
0.436 (0.625) |
0.117 (0.268) |
0.112 (0.263) |
0.0123 (0.0667) |
0.0598 (0.176) |
0.0941 (0.236) |
0.0185 (0.0882) |
0.00956 (0.0552) |
10p gain | 40 (22%) | 144 |
0.0366 (0.129) |
0.0282 (0.113) |
0.458 (0.639) |
0.463 (0.643) |
0.0492 (0.16) |
0.0762 (0.208) |
0.118 (0.27) |
0.216 (0.422) |
0.0553 (0.169) |
0.076 (0.208) |
10q gain | 30 (16%) | 154 |
0.0146 (0.0751) |
0.0322 (0.121) |
0.776 (0.873) |
0.847 (0.914) |
0.0534 (0.167) |
0.0583 (0.175) |
0.0793 (0.211) |
0.0712 (0.197) |
0.0512 (0.162) |
0.0229 (0.0992) |
19q gain | 38 (21%) | 146 |
0.1 (0.244) |
0.139 (0.304) |
0.0161 (0.0794) |
0.0162 (0.0794) |
0.259 (0.471) |
0.159 (0.334) |
0.0447 (0.149) |
0.355 (0.559) |
0.4 (0.588) |
0.112 (0.263) |
2q loss | 18 (10%) | 166 |
0.356 (0.559) |
0.0323 (0.121) |
0.661 (0.791) |
0.419 (0.607) |
0.0765 (0.208) |
0.0329 (0.122) |
0.0638 (0.181) |
0.00653 (0.0406) |
0.28 (0.492) |
0.0873 (0.225) |
4q loss | 87 (47%) | 97 |
0.00044 (0.00547) |
0.0473 (0.156) |
0.895 (0.941) |
0.826 (0.904) |
0.147 (0.316) |
0.094 (0.236) |
0.0391 (0.135) |
0.222 (0.432) |
0.124 (0.281) |
0.0864 (0.224) |
5q loss | 86 (47%) | 98 |
0.0198 (0.0914) |
0.00865 (0.0514) |
0.222 (0.432) |
0.136 (0.298) |
0.0547 (0.169) |
0.106 (0.254) |
0.0208 (0.0944) |
0.112 (0.263) |
0.21 (0.412) |
0.0913 (0.232) |
13q loss | 67 (36%) | 117 |
0.0173 (0.0833) |
0.0647 (0.183) |
0.643 (0.782) |
0.66 (0.791) |
0.19 (0.384) |
0.0346 (0.127) |
0.0412 (0.141) |
0.151 (0.322) |
0.0587 (0.176) |
0.107 (0.255) |
3q gain | 77 (42%) | 107 |
1e-05 (0.000456) |
0.0195 (0.0906) |
0.339 (0.541) |
0.259 (0.471) |
0.0592 (0.176) |
0.0819 (0.217) |
0.305 (0.513) |
0.239 (0.446) |
0.168 (0.35) |
0.411 (0.601) |
17p gain | 33 (18%) | 151 |
0.0511 (0.162) |
0.0317 (0.12) |
0.938 (0.966) |
0.414 (0.603) |
0.0189 (0.089) |
0.0522 (0.164) |
0.367 (0.569) |
0.453 (0.636) |
0.542 (0.709) |
0.553 (0.718) |
1q loss | 22 (12%) | 162 |
0.0391 (0.135) |
0.232 (0.438) |
0.597 (0.752) |
0.584 (0.746) |
0.094 (0.236) |
0.0506 (0.162) |
0.0755 (0.208) |
0.121 (0.275) |
0.0236 (0.101) |
0.126 (0.282) |
2p loss | 11 (6%) | 173 |
0.856 (0.917) |
0.132 (0.291) |
0.0611 (0.177) |
0.019 (0.089) |
0.379 (0.575) |
0.311 (0.514) |
0.378 (0.575) |
0.00181 (0.0163) |
0.836 (0.906) |
0.372 (0.571) |
4p loss | 105 (57%) | 79 |
0.00057 (0.00677) |
0.0771 (0.208) |
0.597 (0.752) |
0.94 (0.967) |
0.623 (0.767) |
0.211 (0.413) |
0.0178 (0.0855) |
0.289 (0.499) |
0.186 (0.378) |
0.41 (0.6) |
19p loss | 65 (35%) | 119 |
0.049 (0.16) |
0.391 (0.582) |
0.752 (0.858) |
0.757 (0.861) |
0.614 (0.761) |
0.52 (0.693) |
0.0633 (0.181) |
0.121 (0.275) |
0.0945 (0.236) |
0.00937 (0.0545) |
4q gain | 18 (10%) | 166 |
0.0849 (0.222) |
0.325 (0.527) |
0.127 (0.284) |
0.0329 (0.122) |
0.235 (0.441) |
0.125 (0.281) |
0.309 (0.514) |
0.546 (0.711) |
0.555 (0.719) |
0.492 (0.664) |
6p gain | 38 (21%) | 146 |
0.241 (0.448) |
0.368 (0.569) |
0.0769 (0.208) |
0.228 (0.435) |
0.283 (0.495) |
0.27 (0.483) |
0.254 (0.466) |
0.105 (0.253) |
0.116 (0.267) |
0.0294 (0.115) |
6q gain | 33 (18%) | 151 |
0.234 (0.441) |
0.329 (0.531) |
0.0356 (0.129) |
0.235 (0.441) |
0.301 (0.511) |
0.244 (0.453) |
0.374 (0.571) |
0.288 (0.498) |
0.147 (0.316) |
0.0825 (0.217) |
9p gain | 16 (9%) | 168 |
0.798 (0.885) |
0.48 (0.657) |
0.364 (0.567) |
0.0392 (0.135) |
0.297 (0.509) |
0.484 (0.659) |
0.563 (0.726) |
0.185 (0.376) |
0.587 (0.747) |
0.469 (0.647) |
9q gain | 33 (18%) | 151 |
0.394 (0.585) |
0.261 (0.471) |
0.619 (0.765) |
0.631 (0.774) |
0.0671 (0.188) |
0.412 (0.601) |
0.385 (0.578) |
0.0296 (0.115) |
0.673 (0.797) |
0.0793 (0.211) |
11q gain | 29 (16%) | 155 |
0.286 (0.497) |
0.312 (0.514) |
0.658 (0.791) |
0.753 (0.858) |
0.0564 (0.172) |
0.103 (0.25) |
0.048 (0.158) |
0.177 (0.364) |
0.0816 (0.217) |
0.0787 (0.211) |
18p gain | 50 (27%) | 134 |
0.0612 (0.177) |
0.374 (0.571) |
0.762 (0.866) |
0.671 (0.796) |
0.191 (0.387) |
0.33 (0.531) |
0.0219 (0.0973) |
0.871 (0.926) |
0.937 (0.966) |
0.814 (0.897) |
19p gain | 28 (15%) | 156 |
0.429 (0.617) |
0.279 (0.491) |
0.0147 (0.0752) |
0.206 (0.408) |
0.679 (0.801) |
0.73 (0.844) |
0.383 (0.578) |
0.904 (0.946) |
0.54 (0.709) |
0.495 (0.668) |
20p gain | 108 (59%) | 76 |
0.00455 (0.0314) |
0.0578 (0.174) |
0.202 (0.403) |
0.149 (0.318) |
0.0911 (0.232) |
0.223 (0.432) |
0.101 (0.246) |
0.261 (0.471) |
0.387 (0.579) |
0.059 (0.176) |
8p loss | 63 (34%) | 121 |
0.00496 (0.0331) |
0.464 (0.643) |
0.532 (0.702) |
0.92 (0.954) |
0.455 (0.636) |
0.505 (0.678) |
0.308 (0.514) |
0.597 (0.752) |
0.385 (0.578) |
0.309 (0.514) |
xp loss | 60 (33%) | 124 |
0.00467 (0.0319) |
0.174 (0.361) |
0.0511 (0.162) |
0.349 (0.551) |
0.308 (0.514) |
0.807 (0.892) |
0.524 (0.695) |
0.242 (0.451) |
0.325 (0.527) |
0.263 (0.475) |
1p gain | 37 (20%) | 147 |
0.652 (0.786) |
0.228 (0.435) |
0.514 (0.687) |
0.198 (0.395) |
0.856 (0.917) |
0.775 (0.873) |
1 (1.00) |
0.885 (0.934) |
0.454 (0.636) |
0.964 (0.986) |
1q gain | 63 (34%) | 121 |
0.0611 (0.177) |
0.207 (0.409) |
0.271 (0.483) |
0.0939 (0.236) |
0.669 (0.795) |
0.445 (0.634) |
0.39 (0.582) |
0.487 (0.659) |
0.505 (0.678) |
0.626 (0.768) |
2q gain | 46 (25%) | 138 |
0.266 (0.478) |
0.0704 (0.195) |
0.224 (0.434) |
0.274 (0.486) |
0.923 (0.955) |
0.105 (0.253) |
0.484 (0.659) |
0.768 (0.869) |
0.256 (0.468) |
0.885 (0.934) |
3p gain | 31 (17%) | 153 |
0.305 (0.513) |
0.448 (0.636) |
0.767 (0.869) |
0.757 (0.861) |
0.57 (0.732) |
0.307 (0.514) |
0.776 (0.873) |
0.609 (0.76) |
0.86 (0.918) |
0.615 (0.761) |
4p gain | 19 (10%) | 165 |
0.532 (0.702) |
0.857 (0.917) |
0.689 (0.808) |
0.312 (0.514) |
0.947 (0.972) |
0.692 (0.811) |
1 (1.00) |
0.958 (0.98) |
0.979 (0.996) |
1 (1.00) |
5q gain | 20 (11%) | 164 |
0.405 (0.596) |
0.777 (0.873) |
0.904 (0.946) |
0.668 (0.795) |
1 (1.00) |
0.836 (0.906) |
0.7 (0.818) |
0.987 (1.00) |
0.752 (0.858) |
0.792 (0.88) |
7p gain | 110 (60%) | 74 |
0.35 (0.552) |
0.237 (0.444) |
0.318 (0.521) |
0.3 (0.511) |
0.247 (0.455) |
0.179 (0.367) |
0.0766 (0.208) |
0.209 (0.411) |
0.553 (0.718) |
0.109 (0.259) |
7q gain | 89 (48%) | 95 |
0.664 (0.792) |
0.291 (0.5) |
0.113 (0.264) |
0.453 (0.636) |
0.41 (0.6) |
0.307 (0.514) |
0.424 (0.612) |
0.746 (0.854) |
0.836 (0.906) |
0.121 (0.275) |
8p gain | 68 (37%) | 116 |
0.315 (0.519) |
0.539 (0.709) |
0.973 (0.994) |
0.845 (0.913) |
0.598 (0.752) |
0.0611 (0.177) |
0.371 (0.571) |
0.832 (0.906) |
0.558 (0.72) |
0.74 (0.851) |
8q gain | 101 (55%) | 83 |
0.467 (0.645) |
0.288 (0.498) |
0.487 (0.659) |
0.133 (0.293) |
0.253 (0.466) |
0.415 (0.603) |
0.29 (0.5) |
0.728 (0.843) |
0.912 (0.949) |
0.977 (0.996) |
11p gain | 39 (21%) | 145 |
0.644 (0.782) |
0.914 (0.95) |
0.298 (0.509) |
0.934 (0.966) |
0.471 (0.649) |
0.633 (0.775) |
0.347 (0.55) |
0.318 (0.521) |
0.876 (0.928) |
0.48 (0.657) |
12q gain | 38 (21%) | 146 |
0.172 (0.36) |
0.323 (0.525) |
0.334 (0.536) |
0.482 (0.658) |
0.0635 (0.181) |
0.625 (0.768) |
0.395 (0.585) |
0.452 (0.636) |
0.268 (0.48) |
0.256 (0.468) |
15q gain | 30 (16%) | 154 |
0.389 (0.581) |
0.276 (0.489) |
0.612 (0.761) |
0.23 (0.436) |
0.115 (0.266) |
0.0513 (0.162) |
0.456 (0.636) |
0.372 (0.571) |
0.319 (0.521) |
0.365 (0.568) |
17q gain | 45 (24%) | 139 |
0.141 (0.307) |
0.208 (0.411) |
0.945 (0.971) |
0.614 (0.761) |
0.455 (0.636) |
0.0598 (0.176) |
0.858 (0.917) |
0.936 (0.966) |
0.992 (1.00) |
0.638 (0.779) |
18q gain | 26 (14%) | 158 |
0.738 (0.85) |
0.813 (0.897) |
0.782 (0.874) |
0.444 (0.633) |
0.358 (0.56) |
0.91 (0.949) |
0.395 (0.585) |
0.305 (0.513) |
0.383 (0.578) |
0.227 (0.435) |
21q gain | 18 (10%) | 166 |
1 (1.00) |
0.566 (0.729) |
0.398 (0.587) |
0.611 (0.761) |
0.266 (0.478) |
0.42 (0.608) |
0.213 (0.417) |
0.427 (0.615) |
0.387 (0.579) |
0.228 (0.435) |
xp gain | 23 (12%) | 161 |
0.451 (0.636) |
0.303 (0.512) |
0.356 (0.559) |
0.193 (0.388) |
0.286 (0.497) |
0.726 (0.842) |
0.384 (0.578) |
0.131 (0.291) |
0.203 (0.404) |
0.151 (0.322) |
3q loss | 33 (18%) | 151 |
0.857 (0.917) |
0.672 (0.796) |
0.193 (0.388) |
0.661 (0.791) |
0.335 (0.536) |
0.596 (0.752) |
0.651 (0.786) |
0.912 (0.949) |
0.662 (0.791) |
0.892 (0.939) |
6p loss | 39 (21%) | 145 |
0.345 (0.547) |
0.621 (0.766) |
0.608 (0.76) |
0.836 (0.906) |
0.43 (0.618) |
0.703 (0.82) |
0.374 (0.571) |
0.367 (0.569) |
0.86 (0.918) |
0.461 (0.642) |
6q loss | 39 (21%) | 145 |
0.331 (0.533) |
0.661 (0.791) |
0.196 (0.392) |
0.594 (0.752) |
1 (1.00) |
0.873 (0.928) |
0.486 (0.659) |
0.68 (0.801) |
0.831 (0.906) |
0.274 (0.486) |
7p loss | 13 (7%) | 171 |
0.817 (0.899) |
0.556 (0.719) |
0.736 (0.848) |
0.117 (0.268) |
0.437 (0.625) |
0.64 (0.779) |
0.578 (0.741) |
0.585 (0.746) |
0.299 (0.509) |
0.651 (0.786) |
7q loss | 22 (12%) | 162 |
0.175 (0.363) |
0.339 (0.541) |
0.712 (0.829) |
0.285 (0.497) |
0.83 (0.906) |
0.543 (0.71) |
0.587 (0.747) |
0.855 (0.917) |
0.227 (0.435) |
0.805 (0.891) |
8q loss | 23 (12%) | 161 |
0.782 (0.874) |
1 (1.00) |
0.989 (1.00) |
0.95 (0.974) |
1 (1.00) |
0.131 (0.291) |
0.822 (0.902) |
0.26 (0.471) |
0.716 (0.832) |
1 (1.00) |
9p loss | 101 (55%) | 83 |
0.0887 (0.228) |
0.115 (0.267) |
0.274 (0.486) |
0.698 (0.816) |
0.244 (0.452) |
0.173 (0.36) |
0.528 (0.699) |
0.571 (0.732) |
0.782 (0.874) |
0.541 (0.709) |
9q loss | 65 (35%) | 119 |
0.0639 (0.181) |
0.18 (0.367) |
0.464 (0.643) |
0.343 (0.546) |
0.84 (0.909) |
0.523 (0.695) |
0.647 (0.785) |
0.23 (0.436) |
0.0683 (0.191) |
0.798 (0.885) |
11p loss | 52 (28%) | 132 |
0.101 (0.246) |
0.229 (0.435) |
0.513 (0.687) |
0.732 (0.845) |
0.743 (0.853) |
0.917 (0.952) |
0.901 (0.945) |
0.65 (0.786) |
0.82 (0.9) |
0.77 (0.87) |
17q loss | 25 (14%) | 159 |
0.792 (0.88) |
0.604 (0.759) |
0.785 (0.876) |
0.606 (0.759) |
0.881 (0.932) |
0.907 (0.948) |
0.515 (0.687) |
0.891 (0.939) |
0.361 (0.563) |
0.868 (0.925) |
20p loss | 19 (10%) | 165 |
0.584 (0.746) |
0.856 (0.917) |
0.517 (0.69) |
0.824 (0.902) |
0.552 (0.718) |
0.15 (0.32) |
0.595 (0.752) |
0.417 (0.606) |
0.685 (0.806) |
0.479 (0.657) |
20q loss | 8 (4%) | 176 |
0.902 (0.945) |
0.705 (0.821) |
0.634 (0.775) |
0.767 (0.869) |
1 (1.00) |
0.668 (0.795) |
1 (1.00) |
0.677 (0.8) |
0.745 (0.854) |
0.45 (0.636) |
P value = 0.0124 (Fisher's exact test), Q value = 0.067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
2P GAIN MUTATED | 20 | 8 | 33 |
2P GAIN WILD-TYPE | 45 | 36 | 42 |
P value = 0.0313 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
2P GAIN MUTATED | 22 | 6 | 33 |
2P GAIN WILD-TYPE | 54 | 26 | 43 |
P value = 0.0365 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
2P GAIN MUTATED | 24 | 36 | 1 |
2P GAIN WILD-TYPE | 60 | 51 | 11 |
P value = 0.00294 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
2P GAIN MUTATED | 20 | 32 | 5 | 2 |
2P GAIN WILD-TYPE | 46 | 34 | 30 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
3Q GAIN MUTATED | 29 | 5 | 43 |
3Q GAIN WILD-TYPE | 36 | 39 | 32 |
P value = 0.0195 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
3Q GAIN MUTATED | 29 | 8 | 40 |
3Q GAIN WILD-TYPE | 47 | 24 | 36 |
P value = 0.0329 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 23 | 21 | 22 | 26 | 34 |
4Q GAIN MUTATED | 1 | 6 | 4 | 3 | 1 |
4Q GAIN WILD-TYPE | 22 | 15 | 18 | 23 | 33 |
P value = 6e-05 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
5P GAIN MUTATED | 22 | 9 | 45 |
5P GAIN WILD-TYPE | 43 | 35 | 30 |
P value = 0.0272 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
5P GAIN MUTATED | 24 | 12 | 40 |
5P GAIN WILD-TYPE | 52 | 20 | 36 |
P value = 0.0295 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
5P GAIN MUTATED | 26 | 34 | 16 |
5P GAIN WILD-TYPE | 58 | 34 | 15 |
P value = 0.0115 (Fisher's exact test), Q value = 0.064
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
5P GAIN MUTATED | 23 | 4 | 49 |
5P GAIN WILD-TYPE | 44 | 16 | 47 |
P value = 0.0135 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
5P GAIN MUTATED | 26 | 46 | 4 |
5P GAIN WILD-TYPE | 58 | 41 | 8 |
P value = 0.0334 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
5P GAIN MUTATED | 18 | 9 | 33 | 16 |
5P GAIN WILD-TYPE | 44 | 17 | 29 | 17 |
P value = 0.0499 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
5P GAIN MUTATED | 20 | 35 | 15 | 6 |
5P GAIN WILD-TYPE | 46 | 31 | 20 | 5 |
P value = 0.0159 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
5P GAIN MUTATED | 18 | 9 | 49 |
5P GAIN WILD-TYPE | 44 | 13 | 45 |
P value = 0.0294 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
6P GAIN MUTATED | 20 | 2 | 16 |
6P GAIN WILD-TYPE | 42 | 20 | 78 |
P value = 0.0356 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 24 | 16 | 17 | 23 | 17 | 24 | 5 |
6Q GAIN MUTATED | 3 | 7 | 2 | 4 | 2 | 1 | 2 |
6Q GAIN WILD-TYPE | 21 | 9 | 15 | 19 | 15 | 23 | 3 |
P value = 0.0392 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 23 | 21 | 22 | 26 | 34 |
9P GAIN MUTATED | 0 | 3 | 4 | 5 | 1 |
9P GAIN WILD-TYPE | 23 | 18 | 18 | 21 | 33 |
P value = 0.0296 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
9Q GAIN MUTATED | 6 | 6 | 17 | 3 |
9Q GAIN WILD-TYPE | 56 | 20 | 45 | 30 |
P value = 0.0366 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
10P GAIN MUTATED | 21 | 8 | 11 |
10P GAIN WILD-TYPE | 44 | 36 | 64 |
P value = 0.0282 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
10P GAIN MUTATED | 24 | 4 | 12 |
10P GAIN WILD-TYPE | 52 | 28 | 64 |
P value = 0.0492 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
10P GAIN MUTATED | 25 | 9 | 6 |
10P GAIN WILD-TYPE | 59 | 59 | 25 |
P value = 0.0146 (Fisher's exact test), Q value = 0.075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
10Q GAIN MUTATED | 17 | 7 | 6 |
10Q GAIN WILD-TYPE | 48 | 37 | 69 |
P value = 0.0322 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
10Q GAIN MUTATED | 19 | 3 | 8 |
10Q GAIN WILD-TYPE | 57 | 29 | 68 |
P value = 0.0229 (Fisher's exact test), Q value = 0.099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
10Q GAIN MUTATED | 16 | 4 | 9 |
10Q GAIN WILD-TYPE | 46 | 18 | 85 |
P value = 0.048 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
11Q GAIN MUTATED | 19 | 10 | 0 |
11Q GAIN WILD-TYPE | 65 | 77 | 12 |
P value = 0.023 (Fisher's exact test), Q value = 0.099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
12P GAIN MUTATED | 17 | 9 | 32 |
12P GAIN WILD-TYPE | 48 | 35 | 43 |
P value = 0.00408 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
12P GAIN MUTATED | 14 | 12 | 32 |
12P GAIN WILD-TYPE | 62 | 20 | 44 |
P value = 0.041 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 24 | 16 | 17 | 23 | 17 | 24 | 5 |
12P GAIN MUTATED | 4 | 4 | 5 | 14 | 5 | 7 | 3 |
12P GAIN WILD-TYPE | 20 | 12 | 12 | 9 | 12 | 17 | 2 |
P value = 0.0024 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
12P GAIN MUTATED | 16 | 28 | 14 |
12P GAIN WILD-TYPE | 68 | 40 | 17 |
P value = 0.00288 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
12P GAIN MUTATED | 14 | 3 | 41 |
12P GAIN WILD-TYPE | 53 | 17 | 55 |
P value = 0.00569 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
12P GAIN MUTATED | 17 | 37 | 3 |
12P GAIN WILD-TYPE | 67 | 50 | 9 |
P value = 0.00301 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
12P GAIN MUTATED | 12 | 5 | 30 | 10 |
12P GAIN WILD-TYPE | 50 | 21 | 32 | 23 |
P value = 0.00306 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
12P GAIN MUTATED | 14 | 32 | 8 | 2 |
12P GAIN WILD-TYPE | 52 | 34 | 27 | 9 |
P value = 0.0103 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
12P GAIN MUTATED | 12 | 5 | 39 |
12P GAIN WILD-TYPE | 50 | 17 | 55 |
P value = 0.00273 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
13Q GAIN MUTATED | 24 | 10 | 9 |
13Q GAIN WILD-TYPE | 41 | 34 | 66 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
13Q GAIN MUTATED | 31 | 5 | 7 |
13Q GAIN WILD-TYPE | 45 | 27 | 69 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
13Q GAIN MUTATED | 34 | 7 | 2 |
13Q GAIN WILD-TYPE | 50 | 61 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
13Q GAIN MUTATED | 23 | 11 | 9 |
13Q GAIN WILD-TYPE | 44 | 9 | 87 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
13Q GAIN MUTATED | 34 | 9 | 0 |
13Q GAIN WILD-TYPE | 50 | 78 | 12 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
13Q GAIN MUTATED | 25 | 9 | 5 | 4 |
13Q GAIN WILD-TYPE | 37 | 17 | 57 | 29 |
P value = 0.00014 (Fisher's exact test), Q value = 0.0024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
13Q GAIN MUTATED | 28 | 8 | 4 | 3 |
13Q GAIN WILD-TYPE | 38 | 58 | 31 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
13Q GAIN MUTATED | 26 | 8 | 9 |
13Q GAIN WILD-TYPE | 36 | 14 | 85 |
P value = 0.0359 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
14Q GAIN MUTATED | 14 | 7 | 27 |
14Q GAIN WILD-TYPE | 51 | 37 | 48 |
P value = 0.016 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
14Q GAIN MUTATED | 14 | 25 | 9 |
14Q GAIN WILD-TYPE | 70 | 43 | 22 |
P value = 0.023 (Fisher's exact test), Q value = 0.099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
14Q GAIN MUTATED | 13 | 2 | 33 |
14Q GAIN WILD-TYPE | 54 | 18 | 63 |
P value = 0.0378 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
14Q GAIN MUTATED | 15 | 30 | 2 |
14Q GAIN WILD-TYPE | 69 | 57 | 10 |
P value = 0.0357 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
14Q GAIN MUTATED | 11 | 4 | 24 | 8 |
14Q GAIN WILD-TYPE | 51 | 22 | 38 | 25 |
P value = 0.0037 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
16P GAIN MUTATED | 10 | 5 | 26 |
16P GAIN WILD-TYPE | 55 | 39 | 49 |
P value = 0.0361 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
16P GAIN MUTATED | 12 | 21 | 8 |
16P GAIN WILD-TYPE | 72 | 47 | 23 |
P value = 0.00341 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
16P GAIN MUTATED | 12 | 0 | 29 |
16P GAIN WILD-TYPE | 55 | 20 | 67 |
P value = 0.0259 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
16P GAIN MUTATED | 12 | 27 | 2 |
16P GAIN WILD-TYPE | 72 | 60 | 10 |
P value = 0.036 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
16P GAIN MUTATED | 8 | 4 | 21 | 8 |
16P GAIN WILD-TYPE | 54 | 22 | 41 | 25 |
P value = 0.00075 (Fisher's exact test), Q value = 0.0083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
16Q GAIN MUTATED | 7 | 5 | 26 |
16Q GAIN WILD-TYPE | 58 | 39 | 49 |
P value = 0.0272 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
16Q GAIN MUTATED | 9 | 7 | 22 |
16Q GAIN WILD-TYPE | 67 | 25 | 54 |
P value = 0.0169 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 23 | 21 | 22 | 26 | 34 |
16Q GAIN MUTATED | 0 | 3 | 7 | 8 | 8 |
16Q GAIN WILD-TYPE | 23 | 18 | 15 | 18 | 26 |
P value = 0.00859 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
16Q GAIN MUTATED | 10 | 22 | 6 |
16Q GAIN WILD-TYPE | 74 | 46 | 25 |
P value = 0.014 (Fisher's exact test), Q value = 0.073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
16Q GAIN MUTATED | 8 | 2 | 28 |
16Q GAIN WILD-TYPE | 59 | 18 | 68 |
P value = 0.0124 (Fisher's exact test), Q value = 0.067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
16Q GAIN MUTATED | 10 | 26 | 2 |
16Q GAIN WILD-TYPE | 74 | 61 | 10 |
P value = 0.00681 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
16Q GAIN MUTATED | 5 | 5 | 20 | 8 |
16Q GAIN WILD-TYPE | 57 | 21 | 42 | 25 |
P value = 0.00279 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
16Q GAIN MUTATED | 5 | 20 | 7 | 4 |
16Q GAIN WILD-TYPE | 61 | 46 | 28 | 7 |
P value = 0.00693 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
16Q GAIN MUTATED | 5 | 5 | 26 |
16Q GAIN WILD-TYPE | 57 | 17 | 68 |
P value = 0.0317 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
17P GAIN MUTATED | 11 | 2 | 20 |
17P GAIN WILD-TYPE | 65 | 30 | 56 |
P value = 0.0189 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
17P GAIN MUTATED | 12 | 19 | 2 |
17P GAIN WILD-TYPE | 72 | 49 | 29 |
P value = 0.0219 (Fisher's exact test), Q value = 0.097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
18P GAIN MUTATED | 20 | 29 | 0 |
18P GAIN WILD-TYPE | 64 | 58 | 12 |
P value = 0.0147 (Fisher's exact test), Q value = 0.075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 24 | 16 | 17 | 23 | 17 | 24 | 5 |
19P GAIN MUTATED | 5 | 1 | 1 | 7 | 2 | 0 | 2 |
19P GAIN WILD-TYPE | 19 | 15 | 16 | 16 | 15 | 24 | 3 |
P value = 0.0161 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 24 | 16 | 17 | 23 | 17 | 24 | 5 |
19Q GAIN MUTATED | 7 | 1 | 1 | 9 | 4 | 1 | 1 |
19Q GAIN WILD-TYPE | 17 | 15 | 16 | 14 | 13 | 23 | 4 |
P value = 0.0162 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 23 | 21 | 22 | 26 | 34 |
19Q GAIN MUTATED | 8 | 0 | 4 | 3 | 9 |
19Q GAIN WILD-TYPE | 15 | 21 | 18 | 23 | 25 |
P value = 0.0447 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
19Q GAIN MUTATED | 23 | 15 | 0 |
19Q GAIN WILD-TYPE | 61 | 72 | 12 |
P value = 0.00455 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
20P GAIN MUTATED | 47 | 18 | 43 |
20P GAIN WILD-TYPE | 18 | 26 | 32 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
20Q GAIN MUTATED | 54 | 21 | 40 |
20Q GAIN WILD-TYPE | 11 | 23 | 35 |
P value = 0.00029 (Fisher's exact test), Q value = 0.004
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
20Q GAIN MUTATED | 60 | 18 | 37 |
20Q GAIN WILD-TYPE | 16 | 14 | 39 |
P value = 0.027 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 24 | 16 | 17 | 23 | 17 | 24 | 5 |
20Q GAIN MUTATED | 20 | 11 | 7 | 15 | 10 | 9 | 3 |
20Q GAIN WILD-TYPE | 4 | 5 | 10 | 8 | 7 | 15 | 2 |
P value = 0.00176 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
20Q GAIN MUTATED | 64 | 36 | 15 |
20Q GAIN WILD-TYPE | 20 | 32 | 16 |
P value = 0.00218 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
20Q GAIN MUTATED | 51 | 15 | 49 |
20Q GAIN WILD-TYPE | 16 | 5 | 47 |
P value = 0.00046 (Fisher's exact test), Q value = 0.0056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
20Q GAIN MUTATED | 65 | 44 | 5 |
20Q GAIN WILD-TYPE | 19 | 43 | 7 |
P value = 0.00076 (Fisher's exact test), Q value = 0.0083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
20Q GAIN MUTATED | 50 | 17 | 33 | 14 |
20Q GAIN WILD-TYPE | 12 | 9 | 29 | 19 |
P value = 0.00556 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
20Q GAIN MUTATED | 52 | 33 | 21 | 7 |
20Q GAIN WILD-TYPE | 14 | 33 | 14 | 4 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
20Q GAIN MUTATED | 52 | 15 | 46 |
20Q GAIN WILD-TYPE | 10 | 7 | 48 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
22Q GAIN MUTATED | 3 | 3 | 25 |
22Q GAIN WILD-TYPE | 62 | 41 | 50 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
22Q GAIN MUTATED | 3 | 3 | 25 |
22Q GAIN WILD-TYPE | 73 | 29 | 51 |
P value = 0.00173 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 24 | 16 | 17 | 23 | 17 | 24 | 5 |
22Q GAIN MUTATED | 0 | 4 | 0 | 6 | 5 | 9 | 1 |
22Q GAIN WILD-TYPE | 24 | 12 | 17 | 17 | 12 | 15 | 4 |
P value = 0.00067 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 23 | 21 | 22 | 26 | 34 |
22Q GAIN MUTATED | 1 | 0 | 3 | 9 | 12 |
22Q GAIN WILD-TYPE | 22 | 21 | 19 | 17 | 22 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
22Q GAIN MUTATED | 3 | 22 | 6 |
22Q GAIN WILD-TYPE | 81 | 46 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
22Q GAIN MUTATED | 3 | 0 | 28 |
22Q GAIN WILD-TYPE | 64 | 20 | 68 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
22Q GAIN MUTATED | 3 | 26 | 2 |
22Q GAIN WILD-TYPE | 81 | 61 | 10 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
22Q GAIN MUTATED | 2 | 1 | 22 | 6 |
22Q GAIN WILD-TYPE | 60 | 25 | 40 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
22Q GAIN MUTATED | 2 | 25 | 3 | 1 |
22Q GAIN WILD-TYPE | 64 | 41 | 32 | 10 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
22Q GAIN MUTATED | 2 | 1 | 28 |
22Q GAIN WILD-TYPE | 60 | 21 | 66 |
P value = 0.0436 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
XQ GAIN MUTATED | 13 | 4 | 21 |
XQ GAIN WILD-TYPE | 52 | 40 | 54 |
P value = 0.0291 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
XQ GAIN MUTATED | 11 | 4 | 23 |
XQ GAIN WILD-TYPE | 65 | 28 | 53 |
P value = 0.0369 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
XQ GAIN MUTATED | 12 | 21 | 5 |
XQ GAIN WILD-TYPE | 72 | 47 | 26 |
P value = 0.011 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
XQ GAIN MUTATED | 12 | 25 | 0 |
XQ GAIN WILD-TYPE | 72 | 62 | 12 |
P value = 0.0275 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
XQ GAIN MUTATED | 11 | 1 | 19 | 6 |
XQ GAIN WILD-TYPE | 51 | 25 | 43 | 27 |
P value = 0.00924 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
1P LOSS MUTATED | 21 | 4 | 13 |
1P LOSS WILD-TYPE | 44 | 40 | 62 |
P value = 0.0246 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
1P LOSS MUTATED | 23 | 3 | 12 |
1P LOSS WILD-TYPE | 53 | 29 | 64 |
P value = 0.0215 (Fisher's exact test), Q value = 0.097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
1P LOSS MUTATED | 25 | 8 | 5 |
1P LOSS WILD-TYPE | 59 | 60 | 26 |
P value = 0.0381 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
1P LOSS MUTATED | 20 | 5 | 13 |
1P LOSS WILD-TYPE | 47 | 15 | 83 |
P value = 0.0208 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
1P LOSS MUTATED | 25 | 12 | 1 |
1P LOSS WILD-TYPE | 59 | 75 | 11 |
P value = 0.0318 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
1P LOSS MUTATED | 19 | 6 | 11 | 2 |
1P LOSS WILD-TYPE | 43 | 20 | 51 | 31 |
P value = 0.00978 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
1P LOSS MUTATED | 22 | 11 | 4 | 0 |
1P LOSS WILD-TYPE | 44 | 55 | 31 | 11 |
P value = 0.0455 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
1P LOSS MUTATED | 18 | 6 | 13 |
1P LOSS WILD-TYPE | 44 | 16 | 81 |
P value = 0.0391 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
1Q LOSS MUTATED | 13 | 2 | 7 |
1Q LOSS WILD-TYPE | 52 | 42 | 68 |
P value = 0.0236 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
1Q LOSS MUTATED | 14 | 6 | 1 | 0 |
1Q LOSS WILD-TYPE | 52 | 60 | 34 | 11 |
P value = 0.019 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 23 | 21 | 22 | 26 | 34 |
2P LOSS MUTATED | 0 | 5 | 0 | 2 | 2 |
2P LOSS WILD-TYPE | 23 | 16 | 22 | 24 | 32 |
P value = 0.00181 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
2P LOSS MUTATED | 3 | 0 | 1 | 7 |
2P LOSS WILD-TYPE | 59 | 26 | 61 | 26 |
P value = 0.0323 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
2Q LOSS MUTATED | 3 | 6 | 9 |
2Q LOSS WILD-TYPE | 73 | 26 | 67 |
P value = 0.0329 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
2Q LOSS MUTATED | 2 | 2 | 14 |
2Q LOSS WILD-TYPE | 65 | 18 | 82 |
P value = 0.00653 (Fisher's exact test), Q value = 0.041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
2Q LOSS MUTATED | 3 | 1 | 5 | 9 |
2Q LOSS WILD-TYPE | 59 | 25 | 57 | 24 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
3P LOSS MUTATED | 24 | 15 | 54 |
3P LOSS WILD-TYPE | 41 | 29 | 21 |
P value = 6e-05 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
3P LOSS MUTATED | 24 | 18 | 51 |
3P LOSS WILD-TYPE | 52 | 14 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
3P LOSS MUTATED | 27 | 51 | 14 |
3P LOSS WILD-TYPE | 57 | 17 | 17 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
3P LOSS MUTATED | 18 | 9 | 65 |
3P LOSS WILD-TYPE | 49 | 11 | 31 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
3P LOSS MUTATED | 27 | 60 | 6 |
3P LOSS WILD-TYPE | 57 | 27 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
3P LOSS MUTATED | 20 | 8 | 42 | 23 |
3P LOSS WILD-TYPE | 42 | 18 | 20 | 10 |
P value = 0.00116 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
3P LOSS MUTATED | 22 | 44 | 18 | 7 |
3P LOSS WILD-TYPE | 44 | 22 | 17 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
3P LOSS MUTATED | 19 | 8 | 64 |
3P LOSS WILD-TYPE | 43 | 14 | 30 |
P value = 0.00057 (Fisher's exact test), Q value = 0.0068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
4P LOSS MUTATED | 42 | 14 | 49 |
4P LOSS WILD-TYPE | 23 | 30 | 26 |
P value = 0.0178 (Fisher's exact test), Q value = 0.085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
4P LOSS MUTATED | 45 | 57 | 3 |
4P LOSS WILD-TYPE | 39 | 30 | 9 |
P value = 0.00044 (Fisher's exact test), Q value = 0.0055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
4Q LOSS MUTATED | 42 | 12 | 33 |
4Q LOSS WILD-TYPE | 23 | 32 | 42 |
P value = 0.0473 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
4Q LOSS MUTATED | 43 | 10 | 34 |
4Q LOSS WILD-TYPE | 33 | 22 | 42 |
P value = 0.0391 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
4Q LOSS MUTATED | 46 | 39 | 2 |
4Q LOSS WILD-TYPE | 38 | 48 | 10 |
P value = 0.00026 (Fisher's exact test), Q value = 0.0037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
5P LOSS MUTATED | 27 | 10 | 9 |
5P LOSS WILD-TYPE | 38 | 34 | 66 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
5P LOSS MUTATED | 32 | 2 | 12 |
5P LOSS WILD-TYPE | 44 | 30 | 64 |
P value = 5e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
5P LOSS MUTATED | 33 | 12 | 1 |
5P LOSS WILD-TYPE | 51 | 56 | 30 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
5P LOSS MUTATED | 22 | 11 | 13 |
5P LOSS WILD-TYPE | 45 | 9 | 83 |
P value = 6e-05 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
5P LOSS MUTATED | 33 | 12 | 0 |
5P LOSS WILD-TYPE | 51 | 75 | 12 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
5P LOSS MUTATED | 29 | 5 | 7 | 4 |
5P LOSS WILD-TYPE | 33 | 21 | 55 | 29 |
P value = 0.00023 (Fisher's exact test), Q value = 0.0034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
5P LOSS MUTATED | 28 | 11 | 3 | 1 |
5P LOSS WILD-TYPE | 38 | 55 | 32 | 10 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
5P LOSS MUTATED | 28 | 4 | 11 |
5P LOSS WILD-TYPE | 34 | 18 | 83 |
P value = 0.0198 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
5Q LOSS MUTATED | 39 | 15 | 32 |
5Q LOSS WILD-TYPE | 26 | 29 | 43 |
P value = 0.00865 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
5Q LOSS MUTATED | 45 | 9 | 32 |
5Q LOSS WILD-TYPE | 31 | 23 | 44 |
P value = 0.0208 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
5Q LOSS MUTATED | 47 | 37 | 2 |
5Q LOSS WILD-TYPE | 37 | 50 | 10 |
P value = 0.00496 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
8P LOSS MUTATED | 20 | 8 | 35 |
8P LOSS WILD-TYPE | 45 | 36 | 40 |
P value = 0.00205 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
10P LOSS MUTATED | 11 | 8 | 31 |
10P LOSS WILD-TYPE | 54 | 36 | 44 |
P value = 0.00446 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
10P LOSS MUTATED | 12 | 8 | 30 |
10P LOSS WILD-TYPE | 64 | 24 | 46 |
P value = 0.0231 (Fisher's exact test), Q value = 0.099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
10P LOSS MUTATED | 15 | 23 | 12 |
10P LOSS WILD-TYPE | 69 | 45 | 19 |
P value = 0.0142 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
10P LOSS MUTATED | 12 | 3 | 35 |
10P LOSS WILD-TYPE | 55 | 17 | 61 |
P value = 0.00221 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
10P LOSS MUTATED | 15 | 34 | 1 |
10P LOSS WILD-TYPE | 69 | 53 | 11 |
P value = 0.0075 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
10P LOSS MUTATED | 8 | 7 | 24 | 11 |
10P LOSS WILD-TYPE | 54 | 19 | 38 | 22 |
P value = 0.0134 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
10P LOSS MUTATED | 10 | 26 | 10 | 4 |
10P LOSS WILD-TYPE | 56 | 40 | 25 | 7 |
P value = 0.00267 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
10P LOSS MUTATED | 8 | 7 | 35 |
10P LOSS WILD-TYPE | 54 | 15 | 59 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
10Q LOSS MUTATED | 9 | 7 | 33 |
10Q LOSS WILD-TYPE | 56 | 37 | 42 |
P value = 0.00092 (Fisher's exact test), Q value = 0.0097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
10Q LOSS MUTATED | 11 | 7 | 31 |
10Q LOSS WILD-TYPE | 65 | 25 | 45 |
P value = 0.00496 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
10Q LOSS MUTATED | 13 | 26 | 10 |
10Q LOSS WILD-TYPE | 71 | 42 | 21 |
P value = 0.00219 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
10Q LOSS MUTATED | 11 | 2 | 36 |
10Q LOSS WILD-TYPE | 56 | 18 | 60 |
P value = 0.00145 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
10Q LOSS MUTATED | 13 | 34 | 2 |
10Q LOSS WILD-TYPE | 71 | 53 | 10 |
P value = 0.00245 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
10Q LOSS MUTATED | 8 | 5 | 26 | 10 |
10Q LOSS WILD-TYPE | 54 | 21 | 36 | 23 |
P value = 0.0164 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
10Q LOSS MUTATED | 10 | 26 | 10 | 3 |
10Q LOSS WILD-TYPE | 56 | 40 | 25 | 8 |
P value = 0.00163 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
10Q LOSS MUTATED | 8 | 5 | 36 |
10Q LOSS WILD-TYPE | 54 | 17 | 58 |
P value = 0.00049 (Fisher's exact test), Q value = 0.0059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
11Q LOSS MUTATED | 17 | 6 | 35 |
11Q LOSS WILD-TYPE | 48 | 38 | 40 |
P value = 0.0423 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
11Q LOSS MUTATED | 18 | 8 | 32 |
11Q LOSS WILD-TYPE | 58 | 24 | 44 |
P value = 0.0291 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
11Q LOSS MUTATED | 19 | 29 | 9 |
11Q LOSS WILD-TYPE | 65 | 39 | 22 |
P value = 0.0217 (Fisher's exact test), Q value = 0.097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
11Q LOSS MUTATED | 13 | 6 | 38 |
11Q LOSS WILD-TYPE | 54 | 14 | 58 |
P value = 0.0153 (Fisher's exact test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
11Q LOSS MUTATED | 19 | 36 | 2 |
11Q LOSS WILD-TYPE | 65 | 51 | 10 |
P value = 0.00095 (Fisher's exact test), Q value = 0.0099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
12P LOSS MUTATED | 22 | 6 | 5 |
12P LOSS WILD-TYPE | 54 | 26 | 71 |
P value = 0.021 (Fisher's exact test), Q value = 0.095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 23 | 21 | 22 | 26 | 34 |
12P LOSS MUTATED | 10 | 3 | 5 | 3 | 3 |
12P LOSS WILD-TYPE | 13 | 18 | 17 | 23 | 31 |
P value = 0.00075 (Fisher's exact test), Q value = 0.0083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
12P LOSS MUTATED | 25 | 6 | 2 |
12P LOSS WILD-TYPE | 59 | 62 | 29 |
P value = 0.00074 (Fisher's exact test), Q value = 0.0083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
12P LOSS MUTATED | 18 | 7 | 8 |
12P LOSS WILD-TYPE | 49 | 13 | 88 |
P value = 0.00262 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
12P LOSS MUTATED | 24 | 8 | 1 |
12P LOSS WILD-TYPE | 60 | 79 | 11 |
P value = 0.00213 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
12P LOSS MUTATED | 15 | 10 | 5 | 3 |
12P LOSS WILD-TYPE | 47 | 16 | 57 | 30 |
P value = 0.014 (Fisher's exact test), Q value = 0.073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
12P LOSS MUTATED | 20 | 6 | 5 | 2 |
12P LOSS WILD-TYPE | 46 | 60 | 30 | 9 |
P value = 0.00033 (Fisher's exact test), Q value = 0.0044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
12P LOSS MUTATED | 16 | 9 | 8 |
12P LOSS WILD-TYPE | 46 | 13 | 86 |
P value = 0.0027 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
12Q LOSS MUTATED | 20 | 6 | 5 |
12Q LOSS WILD-TYPE | 56 | 26 | 71 |
P value = 0.0076 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
12Q LOSS MUTATED | 22 | 5 | 4 |
12Q LOSS WILD-TYPE | 62 | 63 | 27 |
P value = 0.00564 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
12Q LOSS MUTATED | 15 | 7 | 9 |
12Q LOSS WILD-TYPE | 52 | 13 | 87 |
P value = 0.0256 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
12Q LOSS MUTATED | 21 | 9 | 1 |
12Q LOSS WILD-TYPE | 63 | 78 | 11 |
P value = 0.012 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
12Q LOSS MUTATED | 14 | 8 | 8 | 1 |
12Q LOSS WILD-TYPE | 48 | 18 | 54 | 32 |
P value = 0.00874 (Fisher's exact test), Q value = 0.052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
12Q LOSS MUTATED | 20 | 7 | 3 | 1 |
12Q LOSS WILD-TYPE | 46 | 59 | 32 | 10 |
P value = 0.00633 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
12Q LOSS MUTATED | 15 | 7 | 9 |
12Q LOSS WILD-TYPE | 47 | 15 | 85 |
P value = 0.0173 (Fisher's exact test), Q value = 0.083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
13Q LOSS MUTATED | 21 | 10 | 36 |
13Q LOSS WILD-TYPE | 44 | 34 | 39 |
P value = 0.0346 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
13Q LOSS MUTATED | 22 | 3 | 42 |
13Q LOSS WILD-TYPE | 45 | 17 | 54 |
P value = 0.0412 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
13Q LOSS MUTATED | 24 | 40 | 3 |
13Q LOSS WILD-TYPE | 60 | 47 | 9 |
P value = 0.00081 (Fisher's exact test), Q value = 0.0086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
14Q LOSS MUTATED | 27 | 7 | 11 |
14Q LOSS WILD-TYPE | 38 | 37 | 64 |
P value = 0.00543 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
14Q LOSS MUTATED | 27 | 8 | 10 |
14Q LOSS WILD-TYPE | 49 | 24 | 66 |
P value = 0.0195 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 24 | 16 | 17 | 23 | 17 | 24 | 5 |
14Q LOSS MUTATED | 9 | 7 | 6 | 4 | 5 | 1 | 0 |
14Q LOSS WILD-TYPE | 15 | 9 | 11 | 19 | 12 | 23 | 5 |
P value = 0.00271 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 23 | 21 | 22 | 26 | 34 |
14Q LOSS MUTATED | 7 | 11 | 6 | 6 | 2 |
14Q LOSS WILD-TYPE | 16 | 10 | 16 | 20 | 32 |
P value = 0.00117 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
14Q LOSS MUTATED | 29 | 15 | 1 |
14Q LOSS WILD-TYPE | 55 | 53 | 30 |
P value = 0.019 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
14Q LOSS MUTATED | 24 | 5 | 16 |
14Q LOSS WILD-TYPE | 43 | 15 | 80 |
P value = 0.0284 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
14Q LOSS MUTATED | 28 | 14 | 3 |
14Q LOSS WILD-TYPE | 56 | 73 | 9 |
P value = 0.00267 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
14Q LOSS MUTATED | 26 | 4 | 10 | 5 |
14Q LOSS WILD-TYPE | 36 | 22 | 52 | 28 |
P value = 0.0362 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
14Q LOSS MUTATED | 25 | 12 | 6 | 2 |
14Q LOSS WILD-TYPE | 41 | 54 | 29 | 9 |
P value = 0.00125 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
14Q LOSS MUTATED | 26 | 4 | 15 |
14Q LOSS WILD-TYPE | 36 | 18 | 79 |
P value = 0.0314 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
15Q LOSS MUTATED | 31 | 10 | 16 |
15Q LOSS WILD-TYPE | 45 | 22 | 60 |
P value = 0.0257 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
15Q LOSS MUTATED | 34 | 18 | 5 |
15Q LOSS WILD-TYPE | 50 | 50 | 26 |
P value = 0.00554 (Fisher's exact test), Q value = 0.036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
15Q LOSS MUTATED | 18 | 16 | 14 | 9 |
15Q LOSS WILD-TYPE | 44 | 10 | 48 | 24 |
P value = 0.00079 (Fisher's exact test), Q value = 0.0085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
15Q LOSS MUTATED | 19 | 15 | 23 |
15Q LOSS WILD-TYPE | 43 | 7 | 71 |
P value = 0.00039 (Fisher's exact test), Q value = 0.005
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
16P LOSS MUTATED | 30 | 12 | 12 |
16P LOSS WILD-TYPE | 35 | 32 | 63 |
P value = 0.00016 (Fisher's exact test), Q value = 0.0027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
16P LOSS MUTATED | 35 | 7 | 12 |
16P LOSS WILD-TYPE | 41 | 25 | 64 |
P value = 0.00124 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
16P LOSS MUTATED | 36 | 13 | 5 |
16P LOSS WILD-TYPE | 48 | 55 | 26 |
P value = 0.00017 (Fisher's exact test), Q value = 0.0028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
16P LOSS MUTATED | 27 | 11 | 16 |
16P LOSS WILD-TYPE | 40 | 9 | 80 |
P value = 0.00013 (Fisher's exact test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
16P LOSS MUTATED | 37 | 14 | 2 |
16P LOSS WILD-TYPE | 47 | 73 | 10 |
P value = 0.00031 (Fisher's exact test), Q value = 0.0042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
16P LOSS MUTATED | 30 | 8 | 10 | 5 |
16P LOSS WILD-TYPE | 32 | 18 | 52 | 28 |
P value = 0.00025 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
16P LOSS MUTATED | 31 | 10 | 7 | 3 |
16P LOSS WILD-TYPE | 35 | 56 | 28 | 8 |
P value = 0.00018 (Fisher's exact test), Q value = 0.0028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
16P LOSS MUTATED | 28 | 8 | 15 |
16P LOSS WILD-TYPE | 34 | 14 | 79 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
16Q LOSS MUTATED | 33 | 12 | 8 |
16Q LOSS WILD-TYPE | 32 | 32 | 67 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
16Q LOSS MUTATED | 35 | 8 | 10 |
16Q LOSS WILD-TYPE | 41 | 24 | 66 |
P value = 0.0284 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 23 | 21 | 22 | 26 | 34 |
16Q LOSS MUTATED | 9 | 9 | 3 | 3 | 6 |
16Q LOSS WILD-TYPE | 14 | 12 | 19 | 23 | 28 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
16Q LOSS MUTATED | 38 | 9 | 6 |
16Q LOSS WILD-TYPE | 46 | 59 | 25 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
16Q LOSS MUTATED | 31 | 9 | 13 |
16Q LOSS WILD-TYPE | 36 | 11 | 83 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
16Q LOSS MUTATED | 40 | 12 | 0 |
16Q LOSS WILD-TYPE | 44 | 75 | 12 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
16Q LOSS MUTATED | 31 | 9 | 8 | 4 |
16Q LOSS WILD-TYPE | 31 | 17 | 54 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
16Q LOSS MUTATED | 35 | 10 | 4 | 1 |
16Q LOSS WILD-TYPE | 31 | 56 | 31 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
16Q LOSS MUTATED | 31 | 7 | 12 |
16Q LOSS WILD-TYPE | 31 | 15 | 82 |
P value = 0.00269 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
17P LOSS MUTATED | 35 | 17 | 19 |
17P LOSS WILD-TYPE | 30 | 27 | 56 |
P value = 2e-04 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
17P LOSS MUTATED | 43 | 10 | 18 |
17P LOSS WILD-TYPE | 33 | 22 | 58 |
P value = 0.00033 (Fisher's exact test), Q value = 0.0044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
17P LOSS MUTATED | 46 | 17 | 8 |
17P LOSS WILD-TYPE | 38 | 51 | 23 |
P value = 0.00071 (Fisher's exact test), Q value = 0.0082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
17P LOSS MUTATED | 36 | 10 | 25 |
17P LOSS WILD-TYPE | 31 | 10 | 71 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
17P LOSS MUTATED | 46 | 25 | 0 |
17P LOSS WILD-TYPE | 38 | 62 | 12 |
P value = 0.00123 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
17P LOSS MUTATED | 33 | 14 | 17 | 7 |
17P LOSS WILD-TYPE | 29 | 12 | 45 | 26 |
P value = 0.00018 (Fisher's exact test), Q value = 0.0028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
17P LOSS MUTATED | 33 | 13 | 23 |
17P LOSS WILD-TYPE | 29 | 9 | 71 |
P value = 0.0119 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
18P LOSS MUTATED | 34 | 16 | 21 |
18P LOSS WILD-TYPE | 31 | 28 | 54 |
P value = 0.00101 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
18P LOSS MUTATED | 41 | 11 | 19 |
18P LOSS WILD-TYPE | 35 | 21 | 57 |
P value = 0.00368 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
18P LOSS MUTATED | 43 | 20 | 7 |
18P LOSS WILD-TYPE | 41 | 48 | 24 |
P value = 0.00481 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
18P LOSS MUTATED | 34 | 10 | 26 |
18P LOSS WILD-TYPE | 33 | 10 | 70 |
P value = 0.00101 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
18P LOSS MUTATED | 43 | 22 | 6 |
18P LOSS WILD-TYPE | 41 | 65 | 6 |
P value = 0.023 (Fisher's exact test), Q value = 0.099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
18P LOSS MUTATED | 32 | 12 | 19 | 8 |
18P LOSS WILD-TYPE | 30 | 14 | 43 | 25 |
P value = 0.0249 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
18P LOSS MUTATED | 34 | 17 | 14 | 4 |
18P LOSS WILD-TYPE | 32 | 49 | 21 | 7 |
P value = 0.00575 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
18P LOSS MUTATED | 32 | 11 | 26 |
18P LOSS WILD-TYPE | 30 | 11 | 68 |
P value = 0.0117 (Fisher's exact test), Q value = 0.065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
18Q LOSS MUTATED | 52 | 14 | 36 |
18Q LOSS WILD-TYPE | 24 | 18 | 40 |
P value = 0.0152 (Fisher's exact test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
18Q LOSS MUTATED | 56 | 31 | 14 |
18Q LOSS WILD-TYPE | 28 | 37 | 17 |
P value = 0.0271 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
18Q LOSS MUTATED | 43 | 14 | 44 |
18Q LOSS WILD-TYPE | 24 | 6 | 52 |
P value = 0.0223 (Fisher's exact test), Q value = 0.098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
18Q LOSS MUTATED | 56 | 40 | 6 |
18Q LOSS WILD-TYPE | 28 | 47 | 6 |
P value = 0.00213 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
18Q LOSS MUTATED | 35 | 22 | 33 | 12 |
18Q LOSS WILD-TYPE | 27 | 4 | 29 | 21 |
P value = 0.0472 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
18Q LOSS MUTATED | 43 | 29 | 23 | 5 |
18Q LOSS WILD-TYPE | 23 | 37 | 12 | 6 |
P value = 0.00039 (Fisher's exact test), Q value = 0.005
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
18Q LOSS MUTATED | 36 | 20 | 44 |
18Q LOSS WILD-TYPE | 26 | 2 | 50 |
P value = 0.049 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
19P LOSS MUTATED | 25 | 9 | 31 |
19P LOSS WILD-TYPE | 40 | 35 | 44 |
P value = 0.00937 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
19P LOSS MUTATED | 27 | 2 | 35 |
19P LOSS WILD-TYPE | 35 | 20 | 59 |
P value = 0.00456 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
19Q LOSS MUTATED | 18 | 5 | 29 |
19Q LOSS WILD-TYPE | 47 | 39 | 46 |
P value = 0.0123 (Fisher's exact test), Q value = 0.067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
19Q LOSS MUTATED | 17 | 1 | 34 |
19Q LOSS WILD-TYPE | 50 | 19 | 62 |
P value = 0.0185 (Fisher's exact test), Q value = 0.088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
19Q LOSS MUTATED | 15 | 27 | 5 | 4 |
19Q LOSS WILD-TYPE | 51 | 39 | 30 | 7 |
P value = 0.00956 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
19Q LOSS MUTATED | 17 | 1 | 33 |
19Q LOSS WILD-TYPE | 45 | 21 | 61 |
P value = 0.0316 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
21Q LOSS MUTATED | 43 | 18 | 45 |
21Q LOSS WILD-TYPE | 22 | 26 | 30 |
P value = 0.00599 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
21Q LOSS MUTATED | 54 | 14 | 38 |
21Q LOSS WILD-TYPE | 22 | 18 | 38 |
P value = 0.0321 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
21Q LOSS MUTATED | 56 | 31 | 18 |
21Q LOSS WILD-TYPE | 28 | 37 | 13 |
P value = 0.0204 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
21Q LOSS MUTATED | 57 | 45 | 4 |
21Q LOSS WILD-TYPE | 27 | 42 | 8 |
P value = 0.0419 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
21Q LOSS MUTATED | 45 | 34 | 15 | 8 |
21Q LOSS WILD-TYPE | 21 | 32 | 20 | 3 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
22Q LOSS MUTATED | 40 | 13 | 19 |
22Q LOSS WILD-TYPE | 25 | 31 | 56 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
22Q LOSS MUTATED | 45 | 10 | 17 |
22Q LOSS WILD-TYPE | 31 | 22 | 59 |
P value = 0.00043 (Fisher's exact test), Q value = 0.0054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
22Q LOSS MUTATED | 46 | 19 | 7 |
22Q LOSS WILD-TYPE | 38 | 49 | 24 |
P value = 0.00021 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 67 | 20 | 96 |
22Q LOSS MUTATED | 38 | 9 | 25 |
22Q LOSS WILD-TYPE | 29 | 11 | 71 |
P value = 5e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 87 | 12 |
22Q LOSS MUTATED | 47 | 24 | 1 |
22Q LOSS WILD-TYPE | 37 | 63 | 11 |
P value = 2e-04 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
22Q LOSS MUTATED | 37 | 11 | 14 | 10 |
22Q LOSS WILD-TYPE | 25 | 15 | 48 | 23 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
22Q LOSS MUTATED | 43 | 18 | 7 | 3 |
22Q LOSS WILD-TYPE | 23 | 48 | 28 | 8 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
22Q LOSS MUTATED | 39 | 9 | 23 |
22Q LOSS WILD-TYPE | 23 | 13 | 71 |
P value = 0.00467 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
XP LOSS MUTATED | 27 | 6 | 27 |
XP LOSS WILD-TYPE | 38 | 38 | 48 |
P value = 0.0154 (Fisher's exact test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 65 | 44 | 75 |
XQ LOSS MUTATED | 22 | 6 | 12 |
XQ LOSS WILD-TYPE | 43 | 38 | 63 |
P value = 0.0278 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 76 | 32 | 76 |
XQ LOSS MUTATED | 24 | 4 | 12 |
XQ LOSS WILD-TYPE | 52 | 28 | 64 |
P value = 0.0259 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 23 | 21 | 22 | 26 | 34 |
XQ LOSS MUTATED | 11 | 4 | 2 | 6 | 5 |
XQ LOSS WILD-TYPE | 12 | 17 | 20 | 20 | 29 |
P value = 0.0423 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 84 | 68 | 31 |
XQ LOSS MUTATED | 23 | 15 | 2 |
XQ LOSS WILD-TYPE | 61 | 53 | 29 |
P value = 0.00249 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 62 | 26 | 62 | 33 |
XQ LOSS MUTATED | 22 | 3 | 6 | 9 |
XQ LOSS WILD-TYPE | 40 | 23 | 56 | 24 |
P value = 0.0415 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 66 | 35 | 11 |
XQ LOSS MUTATED | 21 | 12 | 3 | 2 |
XQ LOSS WILD-TYPE | 45 | 54 | 32 | 9 |
P value = 0.0113 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 62 | 22 | 94 |
XQ LOSS MUTATED | 21 | 2 | 15 |
XQ LOSS WILD-TYPE | 41 | 20 | 79 |
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/ESCA-TP/15084413/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/ESCA-TP/15092862/ESCA-TP.transferedmergedcluster.txt
-
Number of patients = 184
-
Number of significantly arm-level cnvs = 82
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.