This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 82 arm-level events and 10 molecular subtypes across 577 patients, 275 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p gain cnv correlated to 'CN_CNMF'.
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1q gain cnv correlated to 'CN_CNMF'.
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2p gain cnv correlated to 'CN_CNMF'.
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2q gain cnv correlated to 'CN_CNMF'.
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3p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', and 'CN_CNMF'.
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3q gain cnv correlated to 'MRNA_CNMF' and 'CN_CNMF'.
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4p gain cnv correlated to 'CN_CNMF'.
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4q gain cnv correlated to 'CN_CNMF'.
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5p gain cnv correlated to 'CN_CNMF'.
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5q gain cnv correlated to 'CN_CNMF'.
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6p gain cnv correlated to 'MRNA_CNMF'.
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6q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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7p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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7q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
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8p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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8q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
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9p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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9q gain cnv correlated to 'CN_CNMF'.
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10p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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11q gain cnv correlated to 'METHLYATION_CNMF'.
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12p gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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12q gain cnv correlated to 'MIR_CHIERARCHICAL', 'CN_CNMF', and 'MRNASEQ_CNMF'.
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14q gain cnv correlated to 'MIR_CNMF'.
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15q gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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16p gain cnv correlated to 'MRNA_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
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16q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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17p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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17q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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18p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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18q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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19p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.
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19q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.
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20p gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.
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20q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.
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21q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
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22q gain cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'RPPA_CHIERARCHICAL'.
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xq gain cnv correlated to 'MRNASEQ_CNMF'.
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1p loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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2p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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2q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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3p loss cnv correlated to 'CN_CNMF'.
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3q loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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4p loss cnv correlated to 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
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4q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
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5p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
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5q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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6p loss cnv correlated to 'CN_CNMF'.
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6q loss cnv correlated to 'CN_CNMF'.
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7p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', and 'CN_CNMF'.
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8q loss cnv correlated to 'MIR_CNMF'.
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9p loss cnv correlated to 'MRNA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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10p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
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10q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
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11p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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11q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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12p loss cnv correlated to 'CN_CNMF'.
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12q loss cnv correlated to 'CN_CNMF'.
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13q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
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14q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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15q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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16p loss cnv correlated to 'CN_CNMF'.
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16q loss cnv correlated to 'CN_CNMF', 'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.
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17p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', and 'CN_CNMF'.
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17q loss cnv correlated to 'MRNA_CNMF', 'MIR_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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18p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'RPPA_CHIERARCHICAL'.
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18q loss cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.
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19p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.
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19q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
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20p loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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20q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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21q loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', and 'RPPA_CNMF'.
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22q loss cnv correlated to 'CN_CNMF'.
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xp loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'MIR_CNMF', 'CN_CNMF', and 'METHLYATION_CNMF'.
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xq loss cnv correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'CN_CNMF', and 'METHLYATION_CNMF'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
MIR CNMF |
MIR CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
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nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
7p gain | 468 (81%) | 109 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.00029 (0.0021) |
1e-05 (0.000132) |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.00214 (0.0114) |
0.00255 (0.0132) |
0.0155 (0.0603) |
5e-05 (0.000494) |
10p loss | 483 (84%) | 94 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.0107 (0.0444) |
9e-05 (0.000802) |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.00222 (0.0117) |
0.0289 (0.098) |
0.222 (0.42) |
0.0127 (0.0502) |
10q loss | 494 (86%) | 83 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.00586 (0.0261) |
0.00015 (0.00119) |
1e-05 (0.000132) |
0.00017 (0.00129) |
9e-05 (0.000802) |
0.00401 (0.0191) |
0.262 (0.468) |
0.0212 (0.0758) |
15q loss | 106 (18%) | 471 |
4e-05 (0.00041) |
1e-05 (0.000132) |
0.00434 (0.0205) |
0.00327 (0.0163) |
1e-05 (0.000132) |
0.0737 (0.198) |
0.0331 (0.109) |
0.0118 (0.0478) |
0.00358 (0.0175) |
0.0232 (0.0815) |
7q gain | 474 (82%) | 103 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.0013 (0.00751) |
9e-05 (0.000802) |
1e-05 (0.000132) |
9e-05 (0.000802) |
0.105 (0.254) |
0.0436 (0.133) |
0.0544 (0.159) |
0.00168 (0.00925) |
20q gain | 220 (38%) | 357 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.00339 (0.0167) |
1e-05 (0.000132) |
4e-05 (0.00041) |
0.00012 (0.001) |
0.0361 (0.115) |
0.00117 (0.0069) |
0.797 (0.915) |
0.119 (0.274) |
21q gain | 64 (11%) | 513 |
0.00127 (0.00739) |
0.00712 (0.0312) |
0.0116 (0.0476) |
0.0038 (0.0183) |
0.00021 (0.00155) |
0.00182 (0.00982) |
0.322 (0.542) |
0.0264 (0.0913) |
0.018 (0.069) |
0.333 (0.557) |
19p gain | 226 (39%) | 351 |
1e-05 (0.000132) |
2e-05 (0.000231) |
0.0906 (0.229) |
0.0003 (0.00216) |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.00919 (0.0392) |
7e-05 (0.000667) |
0.19 (0.374) |
0.66 (0.817) |
19q gain | 199 (34%) | 378 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.144 (0.311) |
0.00299 (0.0151) |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.0465 (0.141) |
0.00109 (0.0066) |
0.0628 (0.175) |
0.341 (0.56) |
20p gain | 222 (38%) | 355 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.00439 (0.0206) |
1e-05 (0.000132) |
3e-05 (0.000328) |
0.00013 (0.00107) |
0.0531 (0.156) |
0.00202 (0.0108) |
0.798 (0.915) |
0.12 (0.276) |
5q loss | 44 (8%) | 533 |
6e-05 (0.000586) |
4e-05 (0.00041) |
0.00106 (0.00654) |
0.188 (0.374) |
0.00016 (0.00124) |
1e-05 (0.000132) |
0.944 (1.00) |
0.626 (0.794) |
0.223 (0.421) |
0.041 (0.127) |
13q loss | 186 (32%) | 391 |
1e-05 (0.000132) |
0.00176 (0.00956) |
0.754 (0.889) |
0.589 (0.772) |
1e-05 (0.000132) |
0.0112 (0.0461) |
0.593 (0.773) |
0.0173 (0.0665) |
0.0483 (0.144) |
0.398 (0.619) |
19p loss | 27 (5%) | 550 |
0.00067 (0.0044) |
0.00111 (0.0066) |
0.0589 (0.17) |
0.436 (0.651) |
0.0125 (0.05) |
8e-05 (0.000754) |
0.0209 (0.0758) |
0.0108 (0.0448) |
0.853 (0.952) |
0.67 (0.82) |
20p loss | 19 (3%) | 558 |
0.00013 (0.00107) |
5e-05 (0.000494) |
0.0365 (0.116) |
0.0932 (0.233) |
2e-05 (0.000231) |
0.31 (0.526) |
0.413 (0.637) |
0.455 (0.673) |
0.0105 (0.0441) |
0.00226 (0.0119) |
8q gain | 59 (10%) | 518 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.0395 (0.123) |
0.451 (0.669) |
1e-05 (0.000132) |
0.00051 (0.00354) |
0.435 (0.651) |
0.752 (0.889) |
0.124 (0.282) |
0.511 (0.721) |
17p gain | 48 (8%) | 529 |
0.00048 (0.00336) |
0.0201 (0.0738) |
0.0786 (0.208) |
0.0396 (0.123) |
4e-05 (0.00041) |
0.0324 (0.107) |
0.15 (0.319) |
0.24 (0.441) |
0.34 (0.56) |
0.391 (0.611) |
18p gain | 58 (10%) | 519 |
1e-05 (0.000132) |
0.00052 (0.00358) |
0.157 (0.326) |
0.368 (0.589) |
1e-05 (0.000132) |
0.00484 (0.0224) |
0.425 (0.645) |
0.15 (0.319) |
0.0187 (0.0701) |
0.0983 (0.24) |
18q gain | 58 (10%) | 519 |
1e-05 (0.000132) |
0.00069 (0.00446) |
0.156 (0.325) |
0.433 (0.651) |
1e-05 (0.000132) |
0.00548 (0.0249) |
0.691 (0.837) |
0.476 (0.692) |
0.019 (0.0707) |
0.114 (0.267) |
4q loss | 56 (10%) | 521 |
0.00081 (0.00515) |
0.00068 (0.00443) |
0.02 (0.0737) |
0.152 (0.319) |
0.00021 (0.00155) |
0.00066 (0.00436) |
0.732 (0.872) |
0.479 (0.692) |
0.558 (0.754) |
1 (1.00) |
5p loss | 43 (7%) | 534 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.00174 (0.00951) |
0.0969 (0.24) |
1e-05 (0.000132) |
3e-05 (0.000328) |
0.939 (1.00) |
0.544 (0.744) |
0.341 (0.56) |
0.0527 (0.156) |
11p loss | 99 (17%) | 478 |
1e-05 (0.000132) |
1e-05 (0.000132) |
0.832 (0.933) |
0.0144 (0.0563) |
1e-05 (0.000132) |
0.00251 (0.013) |
0.73 (0.872) |
0.16 (0.33) |
0.0919 (0.231) |
0.0878 (0.225) |
20q loss | 17 (3%) | 560 |
0.00141 (0.00803) |
0.00017 (0.00129) |
0.366 (0.588) |
0.271 (0.478) |
2e-05 (0.000231) |
0.309 (0.526) |
0.412 (0.637) |
0.457 (0.673) |
0.0403 (0.125) |
0.0123 (0.0493) |
21q loss | 42 (7%) | 535 |
0.0212 (0.0758) |
0.00111 (0.0066) |
0.0523 (0.155) |
0.263 (0.468) |
0.0009 (0.00563) |
0.00137 (0.00786) |
0.0117 (0.0476) |
0.0844 (0.218) |
0.822 (0.931) |
1 (1.00) |
xp loss | 114 (20%) | 463 |
0.00361 (0.0175) |
0.0118 (0.0478) |
0.0424 (0.13) |
0.163 (0.336) |
1e-05 (0.000132) |
0.00019 (0.00143) |
0.874 (0.965) |
0.549 (0.747) |
0.394 (0.615) |
0.832 (0.933) |
3p gain | 58 (10%) | 519 |
0.00057 (0.00383) |
0.0283 (0.0963) |
0.668 (0.82) |
0.0261 (0.0908) |
1e-05 (0.000132) |
0.133 (0.295) |
0.636 (0.804) |
0.341 (0.56) |
0.814 (0.923) |
0.26 (0.466) |
6q gain | 23 (4%) | 554 |
0.00164 (0.00909) |
0.0361 (0.115) |
0.785 (0.912) |
0.103 (0.25) |
0.0241 (0.0845) |
0.00548 (0.0249) |
0.932 (1.00) |
0.529 (0.734) |
0.81 (0.922) |
1 (1.00) |
8p gain | 52 (9%) | 525 |
9e-05 (0.000802) |
0.00056 (0.0038) |
0.062 (0.174) |
0.562 (0.755) |
1e-05 (0.000132) |
0.00385 (0.0185) |
0.437 (0.651) |
0.755 (0.89) |
0.138 (0.303) |
0.676 (0.824) |
10p gain | 13 (2%) | 564 |
0.00105 (0.00652) |
0.00016 (0.00124) |
0.117 (0.272) |
0.0598 (0.171) |
0.0009 (0.00563) |
0.00044 (0.00314) |
0.306 (0.522) |
0.56 (0.755) |
||
16q gain | 37 (6%) | 540 |
0.0181 (0.0691) |
0.00549 (0.0249) |
0.357 (0.581) |
0.0653 (0.179) |
0.0001 (0.000872) |
0.027 (0.093) |
0.758 (0.891) |
0.418 (0.639) |
0.421 (0.642) |
0.736 (0.874) |
17q gain | 60 (10%) | 517 |
0.0011 (0.0066) |
0.0461 (0.14) |
0.129 (0.29) |
0.0705 (0.192) |
2e-05 (0.000231) |
0.0371 (0.117) |
0.0906 (0.229) |
0.109 (0.26) |
0.944 (1.00) |
0.614 (0.789) |
22q gain | 34 (6%) | 543 |
1e-05 (0.000132) |
0.00283 (0.0144) |
0.468 (0.683) |
0.22 (0.418) |
0.00015 (0.00119) |
0.142 (0.309) |
0.213 (0.409) |
0.034 (0.111) |
0.245 (0.447) |
0.192 (0.378) |
4p loss | 55 (10%) | 522 |
0.0811 (0.213) |
0.00346 (0.017) |
0.0325 (0.107) |
0.225 (0.422) |
0.00242 (0.0126) |
0.00163 (0.00909) |
0.291 (0.504) |
0.121 (0.276) |
0.744 (0.881) |
1 (1.00) |
7p loss | 8 (1%) | 569 |
0.0223 (0.0793) |
0.0344 (0.112) |
0.458 (0.675) |
0.041 (0.127) |
0.0158 (0.0611) |
|||||
9p loss | 202 (35%) | 375 |
0.00741 (0.0321) |
0.11 (0.261) |
0.551 (0.748) |
0.483 (0.696) |
0.598 (0.777) |
0.479 (0.692) |
0.619 (0.79) |
0.0482 (0.144) |
0.0213 (0.0758) |
0.00868 (0.0373) |
14q loss | 146 (25%) | 431 |
1e-05 (0.000132) |
0.00015 (0.00119) |
0.511 (0.721) |
0.538 (0.742) |
1e-05 (0.000132) |
0.0257 (0.0897) |
0.814 (0.923) |
0.0916 (0.231) |
0.164 (0.336) |
0.702 (0.846) |
17q loss | 41 (7%) | 536 |
0.00524 (0.0241) |
0.0602 (0.171) |
0.213 (0.409) |
0.0471 (0.142) |
2e-05 (0.000231) |
0.0366 (0.116) |
0.689 (0.835) |
0.484 (0.696) |
0.147 (0.316) |
0.107 (0.257) |
18p loss | 71 (12%) | 506 |
0.0471 (0.142) |
0.032 (0.106) |
0.361 (0.584) |
0.219 (0.416) |
2e-05 (0.000231) |
0.503 (0.715) |
0.064 (0.177) |
0.00639 (0.0282) |
0.133 (0.295) |
0.6 (0.777) |
18q loss | 62 (11%) | 515 |
0.148 (0.319) |
0.00758 (0.0327) |
0.622 (0.79) |
0.239 (0.44) |
0.00011 (0.00093) |
0.479 (0.692) |
0.0094 (0.0399) |
0.00306 (0.0154) |
0.415 (0.638) |
0.12 (0.276) |
19q loss | 35 (6%) | 542 |
0.00059 (0.00393) |
0.00481 (0.0224) |
0.414 (0.637) |
0.151 (0.319) |
0.00122 (0.00715) |
0.00108 (0.0066) |
0.0797 (0.21) |
0.338 (0.56) |
0.932 (1.00) |
0.518 (0.727) |
xq loss | 106 (18%) | 471 |
0.0184 (0.0695) |
0.0151 (0.059) |
0.111 (0.262) |
0.107 (0.257) |
1e-05 (0.000132) |
0.00561 (0.0251) |
0.903 (0.982) |
0.681 (0.828) |
0.413 (0.637) |
0.962 (1.00) |
9p gain | 47 (8%) | 530 |
0.00329 (0.0164) |
0.0318 (0.106) |
0.704 (0.848) |
0.433 (0.651) |
3e-05 (0.000328) |
0.542 (0.744) |
0.8 (0.916) |
0.368 (0.589) |
0.427 (0.646) |
0.114 (0.267) |
12q gain | 49 (8%) | 528 |
0.52 (0.728) |
0.955 (1.00) |
0.539 (0.742) |
0.0105 (0.0441) |
0.00153 (0.00865) |
0.592 (0.773) |
0.309 (0.526) |
0.3 (0.516) |
0.0226 (0.0801) |
0.124 (0.281) |
16p gain | 38 (7%) | 539 |
0.00741 (0.0321) |
0.0667 (0.182) |
0.414 (0.637) |
0.271 (0.478) |
2e-05 (0.000231) |
0.0306 (0.103) |
0.614 (0.789) |
0.478 (0.692) |
1 (1.00) |
1 (1.00) |
2p loss | 32 (6%) | 545 |
0.0314 (0.105) |
0.0281 (0.096) |
0.267 (0.474) |
0.769 (0.901) |
1e-05 (0.000132) |
0.616 (0.789) |
1 (1.00) |
0.429 (0.647) |
0.242 (0.443) |
0.224 (0.422) |
2q loss | 32 (6%) | 545 |
0.0299 (0.101) |
0.0281 (0.096) |
0.261 (0.468) |
0.769 (0.901) |
2e-05 (0.000231) |
0.621 (0.79) |
0.895 (0.979) |
0.249 (0.453) |
0.0841 (0.218) |
0.0731 (0.197) |
11q loss | 93 (16%) | 484 |
5e-05 (0.000494) |
0.00016 (0.00124) |
0.933 (1.00) |
0.0621 (0.174) |
1e-05 (0.000132) |
0.418 (0.639) |
0.937 (1.00) |
0.571 (0.76) |
0.342 (0.56) |
0.533 (0.738) |
16q loss | 83 (14%) | 494 |
0.0599 (0.171) |
0.425 (0.645) |
0.464 (0.679) |
0.897 (0.979) |
0.0132 (0.0522) |
0.37 (0.59) |
0.0478 (0.144) |
0.0185 (0.0696) |
0.664 (0.817) |
0.599 (0.777) |
17p loss | 65 (11%) | 512 |
0.0195 (0.0724) |
0.0203 (0.0745) |
0.648 (0.811) |
0.583 (0.765) |
1e-05 (0.000132) |
0.131 (0.293) |
0.214 (0.41) |
0.352 (0.574) |
0.302 (0.516) |
0.706 (0.848) |
3q gain | 64 (11%) | 513 |
0.00053 (0.00362) |
0.0622 (0.174) |
0.897 (0.979) |
0.064 (0.177) |
1e-05 (0.000132) |
0.0648 (0.178) |
0.711 (0.852) |
0.206 (0.398) |
0.519 (0.728) |
0.15 (0.319) |
12p gain | 60 (10%) | 517 |
0.671 (0.82) |
0.79 (0.915) |
0.646 (0.811) |
0.163 (0.336) |
0.0001 (0.000872) |
0.901 (0.982) |
0.236 (0.435) |
0.664 (0.817) |
0.00416 (0.0197) |
0.0768 (0.205) |
15q gain | 24 (4%) | 553 |
0.0621 (0.174) |
0.11 (0.261) |
0.567 (0.756) |
0.133 (0.295) |
7e-05 (0.000667) |
0.278 (0.487) |
0.534 (0.738) |
0.338 (0.56) |
0.0346 (0.112) |
0.387 (0.611) |
1p loss | 16 (3%) | 561 |
0.638 (0.804) |
0.828 (0.933) |
0.942 (1.00) |
0.196 (0.383) |
0.0211 (0.0758) |
0.583 (0.765) |
0.342 (0.56) |
0.181 (0.363) |
0.11 (0.261) |
0.0182 (0.0693) |
3q loss | 34 (6%) | 543 |
0.229 (0.428) |
0.128 (0.288) |
0.512 (0.721) |
0.678 (0.826) |
4e-05 (0.00041) |
0.0341 (0.111) |
0.784 (0.912) |
0.323 (0.543) |
0.888 (0.977) |
0.181 (0.364) |
1p gain | 82 (14%) | 495 |
0.604 (0.781) |
0.13 (0.291) |
0.487 (0.699) |
0.251 (0.456) |
1e-05 (0.000132) |
0.828 (0.933) |
0.502 (0.714) |
0.0849 (0.219) |
0.337 (0.56) |
0.272 (0.479) |
1q gain | 89 (15%) | 488 |
0.0771 (0.205) |
0.0895 (0.228) |
0.131 (0.293) |
0.627 (0.795) |
1e-05 (0.000132) |
0.528 (0.734) |
0.58 (0.765) |
0.259 (0.466) |
0.826 (0.933) |
0.507 (0.72) |
2p gain | 37 (6%) | 540 |
0.468 (0.683) |
0.734 (0.872) |
0.252 (0.457) |
0.225 (0.422) |
0.00258 (0.0132) |
0.39 (0.611) |
0.808 (0.921) |
0.612 (0.789) |
1 (1.00) |
0.537 (0.741) |
2q gain | 36 (6%) | 541 |
0.645 (0.811) |
0.914 (0.987) |
0.0973 (0.24) |
0.28 (0.49) |
0.00161 (0.00904) |
0.39 (0.611) |
0.985 (1.00) |
0.609 (0.787) |
0.77 (0.901) |
0.179 (0.361) |
4p gain | 36 (6%) | 541 |
0.243 (0.444) |
0.615 (0.789) |
0.488 (0.699) |
0.522 (0.729) |
0.00079 (0.00506) |
0.46 (0.676) |
0.758 (0.891) |
0.554 (0.751) |
0.617 (0.789) |
0.793 (0.915) |
4q gain | 33 (6%) | 544 |
0.313 (0.531) |
0.316 (0.535) |
0.491 (0.703) |
0.542 (0.744) |
0.00559 (0.0251) |
0.268 (0.475) |
0.926 (1) |
0.683 (0.83) |
0.368 (0.589) |
0.663 (0.817) |
5p gain | 49 (8%) | 528 |
0.114 (0.267) |
0.157 (0.326) |
0.178 (0.361) |
0.345 (0.564) |
2e-05 (0.000231) |
0.234 (0.434) |
0.281 (0.491) |
0.529 (0.734) |
0.127 (0.286) |
0.229 (0.428) |
5q gain | 41 (7%) | 536 |
0.14 (0.305) |
0.233 (0.433) |
0.118 (0.273) |
0.0547 (0.159) |
0.00011 (0.00093) |
0.118 (0.273) |
0.39 (0.611) |
0.294 (0.508) |
0.17 (0.347) |
0.403 (0.626) |
6p gain | 24 (4%) | 553 |
0.012 (0.0483) |
0.119 (0.274) |
0.874 (0.965) |
0.159 (0.329) |
0.156 (0.325) |
0.0824 (0.215) |
0.811 (0.922) |
0.582 (0.765) |
1 (1.00) |
1 (1.00) |
9q gain | 71 (12%) | 506 |
0.081 (0.213) |
0.0729 (0.197) |
0.579 (0.765) |
0.168 (0.343) |
3e-05 (0.000328) |
0.198 (0.386) |
0.318 (0.536) |
0.386 (0.611) |
0.669 (0.82) |
0.0787 (0.208) |
11q gain | 14 (2%) | 563 |
0.186 (0.371) |
0.0639 (0.177) |
0.217 (0.413) |
0.362 (0.584) |
0.151 (0.319) |
0.00048 (0.00336) |
0.867 (0.963) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
14q gain | 22 (4%) | 555 |
0.432 (0.65) |
0.781 (0.91) |
0.0105 (0.0441) |
0.806 (0.921) |
0.388 (0.611) |
0.511 (0.721) |
0.474 (0.691) |
0.855 (0.953) |
0.425 (0.645) |
0.326 (0.546) |
xq gain | 16 (3%) | 561 |
0.253 (0.457) |
0.948 (1.00) |
0.984 (1.00) |
0.361 (0.584) |
0.95 (1.00) |
0.717 (0.859) |
0.793 (0.915) |
1 (1.00) |
0.0394 (0.123) |
0.257 (0.463) |
3p loss | 40 (7%) | 537 |
0.909 (0.985) |
0.791 (0.915) |
0.719 (0.86) |
0.15 (0.319) |
0.00011 (0.00093) |
0.203 (0.393) |
0.235 (0.435) |
0.902 (0.982) |
0.636 (0.804) |
0.23 (0.429) |
6p loss | 86 (15%) | 491 |
0.567 (0.756) |
0.333 (0.557) |
0.773 (0.903) |
0.706 (0.848) |
1e-05 (0.000132) |
0.576 (0.763) |
0.795 (0.915) |
0.301 (0.516) |
0.869 (0.963) |
0.593 (0.773) |
6q loss | 125 (22%) | 452 |
0.938 (1.00) |
0.58 (0.765) |
0.566 (0.756) |
0.943 (1.00) |
1e-05 (0.000132) |
0.653 (0.812) |
0.968 (1.00) |
0.646 (0.811) |
0.499 (0.711) |
0.293 (0.507) |
8q loss | 42 (7%) | 535 |
0.618 (0.789) |
0.152 (0.319) |
0.0212 (0.0758) |
0.807 (0.921) |
0.103 (0.25) |
0.136 (0.3) |
0.857 (0.954) |
0.652 (0.812) |
0.463 (0.678) |
0.145 (0.312) |
12p loss | 58 (10%) | 519 |
0.0964 (0.239) |
0.0941 (0.235) |
0.562 (0.755) |
0.833 (0.933) |
0.00608 (0.0269) |
0.598 (0.777) |
0.156 (0.325) |
0.0581 (0.168) |
1 (1.00) |
0.663 (0.817) |
12q loss | 57 (10%) | 520 |
0.14 (0.305) |
0.0983 (0.24) |
0.442 (0.656) |
0.654 (0.812) |
0.00027 (0.00198) |
0.547 (0.747) |
0.18 (0.363) |
0.391 (0.611) |
1 (1.00) |
0.662 (0.817) |
16p loss | 63 (11%) | 514 |
0.286 (0.498) |
0.853 (0.952) |
0.663 (0.817) |
0.733 (0.872) |
0.0353 (0.114) |
0.06 (0.171) |
0.453 (0.67) |
0.189 (0.374) |
0.567 (0.756) |
0.647 (0.811) |
22q loss | 181 (31%) | 396 |
0.65 (0.811) |
0.566 (0.756) |
0.196 (0.383) |
0.875 (0.965) |
1e-05 (0.000132) |
0.0739 (0.198) |
0.911 (0.985) |
0.137 (0.3) |
0.201 (0.39) |
0.0924 (0.232) |
10q gain | 3 (1%) | 574 |
0.555 (0.751) |
1 (1.00) |
0.054 (0.158) |
0.793 (0.915) |
0.196 (0.383) |
0.189 (0.374) |
||||
11p gain | 17 (3%) | 560 |
0.904 (0.982) |
0.878 (0.967) |
0.24 (0.441) |
0.945 (1.00) |
0.197 (0.383) |
0.0881 (0.225) |
0.868 (0.963) |
0.527 (0.734) |
0.697 (0.843) |
1 (1.00) |
13q gain | 10 (2%) | 567 |
0.0524 (0.155) |
0.495 (0.707) |
0.177 (0.359) |
0.827 (0.933) |
0.0564 (0.163) |
1 (1.00) |
0.893 (0.979) |
1 (1.00) |
0.425 (0.645) |
1 (1.00) |
xp gain | 15 (3%) | 562 |
0.284 (0.494) |
1 (1.00) |
0.797 (0.915) |
0.187 (0.372) |
0.897 (0.979) |
0.891 (0.979) |
0.701 (0.846) |
0.378 (0.601) |
0.0873 (0.224) |
0.434 (0.651) |
1q loss | 15 (3%) | 562 |
0.831 (0.933) |
0.977 (1.00) |
0.854 (0.952) |
0.361 (0.584) |
0.135 (0.298) |
1 (1.00) |
0.335 (0.559) |
0.209 (0.402) |
0.517 (0.727) |
0.0832 (0.217) |
7q loss | 6 (1%) | 571 |
0.0993 (0.242) |
0.301 (0.516) |
0.941 (1.00) |
0.126 (0.286) |
0.0975 (0.24) |
|||||
8p loss | 58 (10%) | 519 |
0.546 (0.747) |
0.441 (0.656) |
0.181 (0.363) |
0.78 (0.91) |
0.263 (0.468) |
0.65 (0.811) |
0.905 (0.982) |
0.95 (1.00) |
0.574 (0.762) |
0.389 (0.611) |
9q loss | 94 (16%) | 483 |
0.37 (0.59) |
0.0982 (0.24) |
0.0722 (0.196) |
0.277 (0.487) |
0.548 (0.747) |
0.574 (0.762) |
0.362 (0.584) |
0.121 (0.276) |
0.752 (0.889) |
0.182 (0.365) |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
1P GAIN MUTATED | 50 | 15 | 17 |
1P GAIN WILD-TYPE | 112 | 203 | 180 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
1Q GAIN MUTATED | 57 | 13 | 19 |
1Q GAIN WILD-TYPE | 105 | 205 | 178 |
P value = 0.00258 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
2P GAIN MUTATED | 20 | 9 | 8 |
2P GAIN WILD-TYPE | 142 | 209 | 189 |
P value = 0.00161 (Fisher's exact test), Q value = 0.009
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
2Q GAIN MUTATED | 20 | 9 | 7 |
2Q GAIN WILD-TYPE | 142 | 209 | 190 |
P value = 0.00057 (Fisher's exact test), Q value = 0.0038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
3P GAIN MUTATED | 16 | 18 | 5 | 15 |
3P GAIN WILD-TYPE | 131 | 78 | 147 | 98 |
P value = 0.0283 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
3P GAIN MUTATED | 13 | 18 | 5 | 18 |
3P GAIN WILD-TYPE | 135 | 84 | 95 | 140 |
P value = 0.0261 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
3P GAIN MUTATED | 35 | 5 | 15 |
3P GAIN WILD-TYPE | 258 | 119 | 114 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
3P GAIN MUTATED | 37 | 5 | 16 |
3P GAIN WILD-TYPE | 125 | 213 | 181 |
P value = 0.00053 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
3Q GAIN MUTATED | 17 | 21 | 7 | 15 |
3Q GAIN WILD-TYPE | 130 | 75 | 145 | 98 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
3Q GAIN MUTATED | 38 | 7 | 19 |
3Q GAIN WILD-TYPE | 124 | 211 | 178 |
P value = 0.00079 (Fisher's exact test), Q value = 0.0051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
4P GAIN MUTATED | 19 | 5 | 12 |
4P GAIN WILD-TYPE | 143 | 213 | 185 |
P value = 0.00559 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
4Q GAIN MUTATED | 16 | 5 | 12 |
4Q GAIN WILD-TYPE | 146 | 213 | 185 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
5P GAIN MUTATED | 27 | 7 | 15 |
5P GAIN WILD-TYPE | 135 | 211 | 182 |
P value = 0.00011 (Fisher's exact test), Q value = 0.00093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
5Q GAIN MUTATED | 23 | 6 | 12 |
5Q GAIN WILD-TYPE | 139 | 212 | 185 |
P value = 0.012 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
6P GAIN MUTATED | 4 | 10 | 3 | 3 |
6P GAIN WILD-TYPE | 143 | 86 | 149 | 110 |
P value = 0.00164 (Fisher's exact test), Q value = 0.0091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
6Q GAIN MUTATED | 4 | 11 | 2 | 3 |
6Q GAIN WILD-TYPE | 143 | 85 | 150 | 110 |
P value = 0.0361 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
6Q GAIN MUTATED | 5 | 7 | 0 | 8 |
6Q GAIN WILD-TYPE | 143 | 95 | 100 | 150 |
P value = 0.0241 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
6Q GAIN MUTATED | 10 | 3 | 10 |
6Q GAIN WILD-TYPE | 152 | 215 | 187 |
P value = 0.00548 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
6Q GAIN MUTATED | 0 | 3 | 7 |
6Q GAIN WILD-TYPE | 89 | 105 | 71 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
7P GAIN MUTATED | 135 | 65 | 128 | 82 |
7P GAIN WILD-TYPE | 12 | 31 | 24 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
7P GAIN MUTATED | 132 | 55 | 85 | 138 |
7P GAIN WILD-TYPE | 16 | 47 | 15 | 20 |
P value = 0.00029 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
7P GAIN MUTATED | 139 | 136 | 64 | 105 |
7P GAIN WILD-TYPE | 17 | 47 | 23 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
7P GAIN MUTATED | 214 | 113 | 117 |
7P GAIN WILD-TYPE | 79 | 11 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
7P GAIN MUTATED | 145 | 196 | 127 |
7P GAIN WILD-TYPE | 17 | 22 | 70 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
7P GAIN MUTATED | 82 | 93 | 46 |
7P GAIN WILD-TYPE | 7 | 15 | 32 |
P value = 0.00214 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 58 | 44 | 45 |
7P GAIN MUTATED | 46 | 39 | 37 | 43 |
7P GAIN WILD-TYPE | 8 | 19 | 7 | 2 |
P value = 0.00255 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 76 | 56 |
7P GAIN MUTATED | 62 | 53 | 50 |
7P GAIN WILD-TYPE | 7 | 23 | 6 |
P value = 0.0155 (Fisher's exact test), Q value = 0.06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
7P GAIN MUTATED | 31 | 61 | 28 |
7P GAIN WILD-TYPE | 13 | 6 | 8 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
7P GAIN MUTATED | 16 | 84 | 20 |
7P GAIN WILD-TYPE | 14 | 8 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
7Q GAIN MUTATED | 135 | 62 | 129 | 87 |
7Q GAIN WILD-TYPE | 12 | 34 | 23 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
7Q GAIN MUTATED | 130 | 61 | 84 | 138 |
7Q GAIN WILD-TYPE | 18 | 41 | 16 | 20 |
P value = 0.0013 (Fisher's exact test), Q value = 0.0075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
7Q GAIN MUTATED | 140 | 136 | 68 | 103 |
7Q GAIN WILD-TYPE | 16 | 47 | 19 | 17 |
P value = 9e-05 (Fisher's exact test), Q value = 8e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
7Q GAIN MUTATED | 221 | 112 | 114 |
7Q GAIN WILD-TYPE | 72 | 12 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
7Q GAIN MUTATED | 141 | 199 | 134 |
7Q GAIN WILD-TYPE | 21 | 19 | 63 |
P value = 9e-05 (Fisher's exact test), Q value = 8e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
7Q GAIN MUTATED | 81 | 91 | 50 |
7Q GAIN WILD-TYPE | 8 | 17 | 28 |
P value = 0.0436 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 76 | 56 |
7Q GAIN MUTATED | 61 | 57 | 50 |
7Q GAIN WILD-TYPE | 8 | 19 | 6 |
P value = 0.00168 (Fisher's exact test), Q value = 0.0092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
7Q GAIN MUTATED | 19 | 84 | 21 |
7Q GAIN WILD-TYPE | 11 | 8 | 4 |
P value = 9e-05 (Fisher's exact test), Q value = 8e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
8P GAIN MUTATED | 7 | 18 | 6 | 17 |
8P GAIN WILD-TYPE | 140 | 78 | 146 | 96 |
P value = 0.00056 (Fisher's exact test), Q value = 0.0038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
8P GAIN MUTATED | 10 | 21 | 4 | 13 |
8P GAIN WILD-TYPE | 138 | 81 | 96 | 145 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
8P GAIN MUTATED | 35 | 4 | 13 |
8P GAIN WILD-TYPE | 127 | 214 | 184 |
P value = 0.00385 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
8P GAIN MUTATED | 4 | 10 | 16 |
8P GAIN WILD-TYPE | 85 | 98 | 62 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
8Q GAIN MUTATED | 7 | 20 | 7 | 20 |
8Q GAIN WILD-TYPE | 140 | 76 | 145 | 93 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
8Q GAIN MUTATED | 9 | 26 | 4 | 15 |
8Q GAIN WILD-TYPE | 139 | 76 | 96 | 143 |
P value = 0.0395 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
8Q GAIN MUTATED | 10 | 27 | 10 | 8 |
8Q GAIN WILD-TYPE | 146 | 156 | 77 | 112 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
8Q GAIN MUTATED | 34 | 6 | 19 |
8Q GAIN WILD-TYPE | 128 | 212 | 178 |
P value = 0.00051 (Fisher's exact test), Q value = 0.0035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
8Q GAIN MUTATED | 4 | 11 | 19 |
8Q GAIN WILD-TYPE | 85 | 97 | 59 |
P value = 0.00329 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
9P GAIN MUTATED | 14 | 17 | 7 | 6 |
9P GAIN WILD-TYPE | 133 | 79 | 145 | 107 |
P value = 0.0318 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
9P GAIN MUTATED | 15 | 12 | 2 | 15 |
9P GAIN WILD-TYPE | 133 | 90 | 98 | 143 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
9P GAIN MUTATED | 27 | 7 | 13 |
9P GAIN WILD-TYPE | 135 | 211 | 184 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
9Q GAIN MUTATED | 36 | 14 | 21 |
9Q GAIN WILD-TYPE | 126 | 204 | 176 |
P value = 0.00105 (Fisher's exact test), Q value = 0.0065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
10P GAIN MUTATED | 1 | 6 | 0 | 5 |
10P GAIN WILD-TYPE | 146 | 90 | 152 | 108 |
P value = 0.00016 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
10P GAIN MUTATED | 2 | 9 | 0 | 1 |
10P GAIN WILD-TYPE | 146 | 93 | 100 | 157 |
P value = 9e-04 (Fisher's exact test), Q value = 0.0056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
10P GAIN MUTATED | 3 | 0 | 10 |
10P GAIN WILD-TYPE | 159 | 218 | 187 |
P value = 0.00044 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
10P GAIN MUTATED | 1 | 0 | 7 |
10P GAIN WILD-TYPE | 88 | 108 | 71 |
P value = 0.00048 (Fisher's exact test), Q value = 0.0034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
11Q GAIN MUTATED | 2 | 0 | 8 |
11Q GAIN WILD-TYPE | 87 | 108 | 70 |
P value = 1e-04 (Fisher's exact test), Q value = 0.00087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
12P GAIN MUTATED | 31 | 11 | 18 |
12P GAIN WILD-TYPE | 131 | 207 | 179 |
P value = 0.00416 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
12P GAIN MUTATED | 0 | 12 | 3 |
12P GAIN WILD-TYPE | 44 | 55 | 33 |
P value = 0.0105 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
12Q GAIN MUTATED | 16 | 15 | 17 |
12Q GAIN WILD-TYPE | 277 | 109 | 112 |
P value = 0.00153 (Fisher's exact test), Q value = 0.0087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
12Q GAIN MUTATED | 25 | 11 | 13 |
12Q GAIN WILD-TYPE | 137 | 207 | 184 |
P value = 0.0226 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
12Q GAIN MUTATED | 0 | 9 | 3 |
12Q GAIN WILD-TYPE | 44 | 58 | 33 |
P value = 0.0105 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
14Q GAIN MUTATED | 10 | 4 | 7 | 1 |
14Q GAIN WILD-TYPE | 146 | 179 | 80 | 119 |
P value = 7e-05 (Fisher's exact test), Q value = 0.00067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
15Q GAIN MUTATED | 15 | 1 | 8 |
15Q GAIN WILD-TYPE | 147 | 217 | 189 |
P value = 0.0346 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
15Q GAIN MUTATED | 0 | 7 | 1 |
15Q GAIN WILD-TYPE | 44 | 60 | 35 |
P value = 0.00741 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
16P GAIN MUTATED | 12 | 11 | 3 | 11 |
16P GAIN WILD-TYPE | 135 | 85 | 149 | 102 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
16P GAIN MUTATED | 25 | 4 | 9 |
16P GAIN WILD-TYPE | 137 | 214 | 188 |
P value = 0.0306 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
16P GAIN MUTATED | 6 | 5 | 12 |
16P GAIN WILD-TYPE | 83 | 103 | 66 |
P value = 0.0181 (Fisher's exact test), Q value = 0.069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
16Q GAIN MUTATED | 10 | 12 | 4 | 10 |
16Q GAIN WILD-TYPE | 137 | 84 | 148 | 103 |
P value = 0.00549 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
16Q GAIN MUTATED | 10 | 15 | 2 | 9 |
16Q GAIN WILD-TYPE | 138 | 87 | 98 | 149 |
P value = 1e-04 (Fisher's exact test), Q value = 0.00087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
16Q GAIN MUTATED | 22 | 5 | 10 |
16Q GAIN WILD-TYPE | 140 | 213 | 187 |
P value = 0.027 (Fisher's exact test), Q value = 0.093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
16Q GAIN MUTATED | 5 | 5 | 12 |
16Q GAIN WILD-TYPE | 84 | 103 | 66 |
P value = 0.00048 (Fisher's exact test), Q value = 0.0034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
17P GAIN MUTATED | 9 | 14 | 4 | 16 |
17P GAIN WILD-TYPE | 138 | 82 | 148 | 97 |
P value = 0.0201 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
17P GAIN MUTATED | 9 | 16 | 4 | 14 |
17P GAIN WILD-TYPE | 139 | 86 | 96 | 144 |
P value = 0.0396 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
17P GAIN MUTATED | 32 | 8 | 5 |
17P GAIN WILD-TYPE | 261 | 116 | 124 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
17P GAIN MUTATED | 27 | 9 | 12 |
17P GAIN WILD-TYPE | 135 | 209 | 185 |
P value = 0.0324 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
17P GAIN MUTATED | 5 | 7 | 13 |
17P GAIN WILD-TYPE | 84 | 101 | 65 |
P value = 0.0011 (Fisher's exact test), Q value = 0.0066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
17Q GAIN MUTATED | 13 | 17 | 6 | 17 |
17Q GAIN WILD-TYPE | 134 | 79 | 146 | 96 |
P value = 0.0461 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
17Q GAIN MUTATED | 11 | 17 | 6 | 19 |
17Q GAIN WILD-TYPE | 137 | 85 | 94 | 139 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
17Q GAIN MUTATED | 34 | 12 | 14 |
17Q GAIN WILD-TYPE | 128 | 206 | 183 |
P value = 0.0371 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
17Q GAIN MUTATED | 6 | 10 | 15 |
17Q GAIN WILD-TYPE | 83 | 98 | 63 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
18P GAIN MUTATED | 10 | 25 | 5 | 15 |
18P GAIN WILD-TYPE | 137 | 71 | 147 | 98 |
P value = 0.00052 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
18P GAIN MUTATED | 11 | 22 | 4 | 18 |
18P GAIN WILD-TYPE | 137 | 80 | 96 | 140 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
18P GAIN MUTATED | 34 | 3 | 21 |
18P GAIN WILD-TYPE | 128 | 215 | 176 |
P value = 0.00484 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
18P GAIN MUTATED | 6 | 10 | 18 |
18P GAIN WILD-TYPE | 83 | 98 | 60 |
P value = 0.0187 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
18P GAIN MUTATED | 6 | 11 | 0 |
18P GAIN WILD-TYPE | 38 | 56 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
18Q GAIN MUTATED | 9 | 24 | 6 | 16 |
18Q GAIN WILD-TYPE | 138 | 72 | 146 | 97 |
P value = 0.00069 (Fisher's exact test), Q value = 0.0045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
18Q GAIN MUTATED | 10 | 23 | 6 | 16 |
18Q GAIN WILD-TYPE | 138 | 79 | 94 | 142 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
18Q GAIN MUTATED | 37 | 4 | 17 |
18Q GAIN WILD-TYPE | 125 | 214 | 180 |
P value = 0.00548 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
18Q GAIN MUTATED | 7 | 9 | 18 |
18Q GAIN WILD-TYPE | 82 | 99 | 60 |
P value = 0.019 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
18Q GAIN MUTATED | 6 | 11 | 0 |
18Q GAIN WILD-TYPE | 38 | 56 | 36 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
19P GAIN MUTATED | 52 | 34 | 91 | 21 |
19P GAIN WILD-TYPE | 95 | 62 | 61 | 92 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
19P GAIN MUTATED | 62 | 25 | 58 | 53 |
19P GAIN WILD-TYPE | 86 | 77 | 42 | 105 |
P value = 3e-04 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
19P GAIN MUTATED | 94 | 50 | 68 |
19P GAIN WILD-TYPE | 199 | 74 | 61 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
19P GAIN MUTATED | 45 | 137 | 44 |
19P GAIN WILD-TYPE | 117 | 81 | 153 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
19P GAIN MUTATED | 28 | 68 | 12 |
19P GAIN WILD-TYPE | 61 | 40 | 66 |
P value = 0.00919 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 58 | 44 | 45 |
19P GAIN MUTATED | 18 | 16 | 26 | 15 |
19P GAIN WILD-TYPE | 36 | 42 | 18 | 30 |
P value = 7e-05 (Fisher's exact test), Q value = 0.00067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 76 | 56 |
19P GAIN MUTATED | 22 | 18 | 35 |
19P GAIN WILD-TYPE | 47 | 58 | 21 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
19Q GAIN MUTATED | 46 | 28 | 85 | 15 |
19Q GAIN WILD-TYPE | 101 | 68 | 67 | 98 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
19Q GAIN MUTATED | 55 | 18 | 55 | 46 |
19Q GAIN WILD-TYPE | 93 | 84 | 45 | 112 |
P value = 0.00299 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
19Q GAIN MUTATED | 82 | 47 | 57 |
19Q GAIN WILD-TYPE | 211 | 77 | 72 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
19Q GAIN MUTATED | 39 | 127 | 33 |
19Q GAIN WILD-TYPE | 123 | 91 | 164 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
19Q GAIN MUTATED | 25 | 62 | 6 |
19Q GAIN WILD-TYPE | 64 | 46 | 72 |
P value = 0.0465 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 58 | 44 | 45 |
19Q GAIN MUTATED | 13 | 14 | 21 | 13 |
19Q GAIN WILD-TYPE | 41 | 44 | 23 | 32 |
P value = 0.00109 (Fisher's exact test), Q value = 0.0066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 76 | 56 |
19Q GAIN MUTATED | 17 | 16 | 28 |
19Q GAIN WILD-TYPE | 52 | 60 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
20P GAIN MUTATED | 51 | 26 | 86 | 29 |
20P GAIN WILD-TYPE | 96 | 70 | 66 | 84 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
20P GAIN MUTATED | 55 | 21 | 64 | 52 |
20P GAIN WILD-TYPE | 93 | 81 | 36 | 106 |
P value = 0.00439 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
20P GAIN MUTATED | 61 | 75 | 20 | 56 |
20P GAIN WILD-TYPE | 95 | 108 | 67 | 64 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
20P GAIN MUTATED | 85 | 58 | 69 |
20P GAIN WILD-TYPE | 208 | 66 | 60 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
20P GAIN MUTATED | 61 | 108 | 53 |
20P GAIN WILD-TYPE | 101 | 110 | 144 |
P value = 0.00013 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
20P GAIN MUTATED | 35 | 57 | 17 |
20P GAIN WILD-TYPE | 54 | 51 | 61 |
P value = 0.00202 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 76 | 56 |
20P GAIN MUTATED | 20 | 21 | 31 |
20P GAIN WILD-TYPE | 49 | 55 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
20Q GAIN MUTATED | 50 | 28 | 86 | 27 |
20Q GAIN WILD-TYPE | 97 | 68 | 66 | 86 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
20Q GAIN MUTATED | 58 | 22 | 62 | 49 |
20Q GAIN WILD-TYPE | 90 | 80 | 38 | 109 |
P value = 0.00339 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
20Q GAIN MUTATED | 62 | 74 | 19 | 55 |
20Q GAIN WILD-TYPE | 94 | 109 | 68 | 65 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
20Q GAIN MUTATED | 85 | 57 | 68 |
20Q GAIN WILD-TYPE | 208 | 67 | 61 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
20Q GAIN MUTATED | 59 | 107 | 54 |
20Q GAIN WILD-TYPE | 103 | 111 | 143 |
P value = 0.00012 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
20Q GAIN MUTATED | 34 | 57 | 16 |
20Q GAIN WILD-TYPE | 55 | 51 | 62 |
P value = 0.0361 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 58 | 44 | 45 |
20Q GAIN MUTATED | 20 | 14 | 23 | 17 |
20Q GAIN WILD-TYPE | 34 | 44 | 21 | 28 |
P value = 0.00117 (Fisher's exact test), Q value = 0.0069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 76 | 56 |
20Q GAIN MUTATED | 22 | 20 | 32 |
20Q GAIN WILD-TYPE | 47 | 56 | 24 |
P value = 0.00127 (Fisher's exact test), Q value = 0.0074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
21Q GAIN MUTATED | 28 | 11 | 9 | 7 |
21Q GAIN WILD-TYPE | 119 | 85 | 143 | 106 |
P value = 0.00712 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
21Q GAIN MUTATED | 25 | 6 | 5 | 19 |
21Q GAIN WILD-TYPE | 123 | 96 | 95 | 139 |
P value = 0.0116 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
21Q GAIN MUTATED | 24 | 15 | 4 | 19 |
21Q GAIN WILD-TYPE | 132 | 168 | 83 | 101 |
P value = 0.0038 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
21Q GAIN MUTATED | 26 | 25 | 11 |
21Q GAIN WILD-TYPE | 267 | 99 | 118 |
P value = 0.00021 (Fisher's exact test), Q value = 0.0016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
21Q GAIN MUTATED | 30 | 11 | 23 |
21Q GAIN WILD-TYPE | 132 | 207 | 174 |
P value = 0.00182 (Fisher's exact test), Q value = 0.0098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
21Q GAIN MUTATED | 20 | 7 | 6 |
21Q GAIN WILD-TYPE | 69 | 101 | 72 |
P value = 0.0264 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 76 | 56 |
21Q GAIN MUTATED | 13 | 4 | 4 |
21Q GAIN WILD-TYPE | 56 | 72 | 52 |
P value = 0.018 (Fisher's exact test), Q value = 0.069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
21Q GAIN MUTATED | 2 | 16 | 5 |
21Q GAIN WILD-TYPE | 42 | 51 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
22Q GAIN MUTATED | 6 | 14 | 0 | 11 |
22Q GAIN WILD-TYPE | 141 | 82 | 152 | 102 |
P value = 0.00283 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
22Q GAIN MUTATED | 11 | 11 | 0 | 9 |
22Q GAIN WILD-TYPE | 137 | 91 | 100 | 149 |
P value = 0.00015 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
22Q GAIN MUTATED | 19 | 3 | 12 |
22Q GAIN WILD-TYPE | 143 | 215 | 185 |
P value = 0.034 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 76 | 56 |
22Q GAIN MUTATED | 7 | 4 | 0 |
22Q GAIN WILD-TYPE | 62 | 72 | 56 |
P value = 0.0394 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
XQ GAIN MUTATED | 0 | 6 | 0 |
XQ GAIN WILD-TYPE | 44 | 61 | 36 |
P value = 0.0211 (Fisher's exact test), Q value = 0.076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
1P LOSS MUTATED | 2 | 3 | 11 |
1P LOSS WILD-TYPE | 160 | 215 | 186 |
P value = 0.0182 (Fisher's exact test), Q value = 0.069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
1P LOSS MUTATED | 2 | 0 | 2 |
1P LOSS WILD-TYPE | 28 | 92 | 23 |
P value = 0.0314 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
2P LOSS MUTATED | 7 | 12 | 5 | 5 |
2P LOSS WILD-TYPE | 140 | 84 | 147 | 108 |
P value = 0.0281 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
2P LOSS MUTATED | 8 | 12 | 2 | 7 |
2P LOSS WILD-TYPE | 140 | 90 | 98 | 151 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
2P LOSS MUTATED | 21 | 2 | 9 |
2P LOSS WILD-TYPE | 141 | 216 | 188 |
P value = 0.0299 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
2Q LOSS MUTATED | 7 | 12 | 5 | 5 |
2Q LOSS WILD-TYPE | 140 | 84 | 147 | 108 |
P value = 0.0281 (Fisher's exact test), Q value = 0.096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
2Q LOSS MUTATED | 8 | 12 | 2 | 7 |
2Q LOSS WILD-TYPE | 140 | 90 | 98 | 151 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
2Q LOSS MUTATED | 21 | 2 | 9 |
2Q LOSS WILD-TYPE | 141 | 216 | 188 |
P value = 0.00011 (Fisher's exact test), Q value = 0.00093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
3P LOSS MUTATED | 21 | 4 | 15 |
3P LOSS WILD-TYPE | 141 | 214 | 182 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
3Q LOSS MUTATED | 20 | 2 | 12 |
3Q LOSS WILD-TYPE | 142 | 216 | 185 |
P value = 0.0341 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
3Q LOSS MUTATED | 7 | 2 | 8 |
3Q LOSS WILD-TYPE | 82 | 106 | 70 |
P value = 0.00346 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
4P LOSS MUTATED | 10 | 19 | 4 | 17 |
4P LOSS WILD-TYPE | 138 | 83 | 96 | 141 |
P value = 0.0325 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
4P LOSS MUTATED | 7 | 25 | 8 | 12 |
4P LOSS WILD-TYPE | 149 | 158 | 79 | 108 |
P value = 0.00242 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
4P LOSS MUTATED | 27 | 15 | 13 |
4P LOSS WILD-TYPE | 135 | 203 | 184 |
P value = 0.00163 (Fisher's exact test), Q value = 0.0091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
4P LOSS MUTATED | 2 | 12 | 14 |
4P LOSS WILD-TYPE | 87 | 96 | 64 |
P value = 0.00081 (Fisher's exact test), Q value = 0.0051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
4Q LOSS MUTATED | 10 | 19 | 7 | 13 |
4Q LOSS WILD-TYPE | 137 | 77 | 145 | 100 |
P value = 0.00068 (Fisher's exact test), Q value = 0.0044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
4Q LOSS MUTATED | 10 | 20 | 3 | 16 |
4Q LOSS WILD-TYPE | 138 | 82 | 97 | 142 |
P value = 0.02 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
4Q LOSS MUTATED | 6 | 24 | 9 | 13 |
4Q LOSS WILD-TYPE | 150 | 159 | 78 | 107 |
P value = 0.00021 (Fisher's exact test), Q value = 0.0016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
4Q LOSS MUTATED | 29 | 11 | 16 |
4Q LOSS WILD-TYPE | 133 | 207 | 181 |
P value = 0.00066 (Fisher's exact test), Q value = 0.0044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
4Q LOSS MUTATED | 2 | 12 | 15 |
4Q LOSS WILD-TYPE | 87 | 96 | 63 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
5P LOSS MUTATED | 5 | 20 | 6 | 9 |
5P LOSS WILD-TYPE | 142 | 76 | 146 | 104 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
5P LOSS MUTATED | 6 | 22 | 5 | 7 |
5P LOSS WILD-TYPE | 142 | 80 | 95 | 151 |
P value = 0.00174 (Fisher's exact test), Q value = 0.0095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
5P LOSS MUTATED | 4 | 24 | 6 | 6 |
5P LOSS WILD-TYPE | 152 | 159 | 81 | 114 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
5P LOSS MUTATED | 21 | 4 | 18 |
5P LOSS WILD-TYPE | 141 | 214 | 179 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
5P LOSS MUTATED | 1 | 5 | 15 |
5P LOSS WILD-TYPE | 88 | 103 | 63 |
P value = 6e-05 (Fisher's exact test), Q value = 0.00059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
5Q LOSS MUTATED | 6 | 19 | 5 | 11 |
5Q LOSS WILD-TYPE | 141 | 77 | 147 | 102 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
5Q LOSS MUTATED | 9 | 21 | 4 | 7 |
5Q LOSS WILD-TYPE | 139 | 81 | 96 | 151 |
P value = 0.00106 (Fisher's exact test), Q value = 0.0065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
5Q LOSS MUTATED | 4 | 25 | 6 | 6 |
5Q LOSS WILD-TYPE | 152 | 158 | 81 | 114 |
P value = 0.00016 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
5Q LOSS MUTATED | 21 | 5 | 18 |
5Q LOSS WILD-TYPE | 141 | 213 | 179 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
5Q LOSS MUTATED | 0 | 5 | 17 |
5Q LOSS WILD-TYPE | 89 | 103 | 61 |
P value = 0.041 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
5Q LOSS MUTATED | 6 | 10 | 0 |
5Q LOSS WILD-TYPE | 24 | 82 | 25 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
6P LOSS MUTATED | 51 | 13 | 22 |
6P LOSS WILD-TYPE | 111 | 205 | 175 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
6Q LOSS MUTATED | 62 | 30 | 33 |
6Q LOSS WILD-TYPE | 100 | 188 | 164 |
P value = 0.0223 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
7P LOSS MUTATED | 0 | 4 | 1 | 3 |
7P LOSS WILD-TYPE | 147 | 92 | 151 | 110 |
P value = 0.0344 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
7P LOSS MUTATED | 1 | 5 | 0 | 2 |
7P LOSS WILD-TYPE | 147 | 97 | 100 | 156 |
P value = 0.041 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
7P LOSS MUTATED | 8 | 0 | 0 |
7P LOSS WILD-TYPE | 285 | 124 | 129 |
P value = 0.0158 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
7P LOSS MUTATED | 2 | 0 | 6 |
7P LOSS WILD-TYPE | 160 | 218 | 191 |
P value = 0.0212 (Fisher's exact test), Q value = 0.076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
8Q LOSS MUTATED | 21 | 9 | 6 | 6 |
8Q LOSS WILD-TYPE | 135 | 174 | 81 | 114 |
P value = 0.00741 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
9P LOSS MUTATED | 50 | 20 | 62 | 44 |
9P LOSS WILD-TYPE | 97 | 76 | 90 | 69 |
P value = 0.0482 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 76 | 56 |
9P LOSS MUTATED | 28 | 21 | 27 |
9P LOSS WILD-TYPE | 41 | 55 | 29 |
P value = 0.0213 (Fisher's exact test), Q value = 0.076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
9P LOSS MUTATED | 8 | 23 | 17 |
9P LOSS WILD-TYPE | 36 | 44 | 19 |
P value = 0.00868 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
9P LOSS MUTATED | 4 | 31 | 13 |
9P LOSS WILD-TYPE | 26 | 61 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
10P LOSS MUTATED | 132 | 64 | 140 | 84 |
10P LOSS WILD-TYPE | 15 | 32 | 12 | 29 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
10P LOSS MUTATED | 127 | 63 | 93 | 137 |
10P LOSS WILD-TYPE | 21 | 39 | 7 | 21 |
P value = 0.0107 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
10P LOSS MUTATED | 141 | 145 | 67 | 103 |
10P LOSS WILD-TYPE | 15 | 38 | 20 | 17 |
P value = 9e-05 (Fisher's exact test), Q value = 8e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
10P LOSS MUTATED | 227 | 109 | 120 |
10P LOSS WILD-TYPE | 66 | 15 | 9 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
10P LOSS MUTATED | 150 | 212 | 121 |
10P LOSS WILD-TYPE | 12 | 6 | 76 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
10P LOSS MUTATED | 79 | 99 | 46 |
10P LOSS WILD-TYPE | 10 | 9 | 32 |
P value = 0.00222 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 58 | 44 | 45 |
10P LOSS MUTATED | 50 | 43 | 43 | 40 |
10P LOSS WILD-TYPE | 4 | 15 | 1 | 5 |
P value = 0.0289 (Fisher's exact test), Q value = 0.098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 76 | 56 |
10P LOSS MUTATED | 60 | 62 | 54 |
10P LOSS WILD-TYPE | 9 | 14 | 2 |
P value = 0.0127 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
10P LOSS MUTATED | 22 | 85 | 24 |
10P LOSS WILD-TYPE | 8 | 7 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
10Q LOSS MUTATED | 132 | 68 | 146 | 87 |
10Q LOSS WILD-TYPE | 15 | 28 | 6 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
10Q LOSS MUTATED | 128 | 69 | 97 | 139 |
10Q LOSS WILD-TYPE | 20 | 33 | 3 | 19 |
P value = 0.00586 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
10Q LOSS MUTATED | 144 | 152 | 67 | 105 |
10Q LOSS WILD-TYPE | 12 | 31 | 20 | 15 |
P value = 0.00015 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
10Q LOSS MUTATED | 236 | 109 | 123 |
10Q LOSS WILD-TYPE | 57 | 15 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
10Q LOSS MUTATED | 150 | 214 | 130 |
10Q LOSS WILD-TYPE | 12 | 4 | 67 |
P value = 0.00017 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
10Q LOSS MUTATED | 78 | 102 | 56 |
10Q LOSS WILD-TYPE | 11 | 6 | 22 |
P value = 9e-05 (Fisher's exact test), Q value = 8e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 58 | 44 | 45 |
10Q LOSS MUTATED | 50 | 42 | 44 | 41 |
10Q LOSS WILD-TYPE | 4 | 16 | 0 | 4 |
P value = 0.00401 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 76 | 56 |
10Q LOSS MUTATED | 61 | 61 | 55 |
10Q LOSS WILD-TYPE | 8 | 15 | 1 |
P value = 0.0212 (Fisher's exact test), Q value = 0.076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
10Q LOSS MUTATED | 23 | 86 | 24 |
10Q LOSS WILD-TYPE | 7 | 6 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
11P LOSS MUTATED | 27 | 32 | 9 | 22 |
11P LOSS WILD-TYPE | 120 | 64 | 143 | 91 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
11P LOSS MUTATED | 26 | 36 | 4 | 24 |
11P LOSS WILD-TYPE | 122 | 66 | 96 | 134 |
P value = 0.0144 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
11P LOSS MUTATED | 63 | 20 | 13 |
11P LOSS WILD-TYPE | 230 | 104 | 116 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
11P LOSS MUTATED | 59 | 8 | 32 |
11P LOSS WILD-TYPE | 103 | 210 | 165 |
P value = 0.00251 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
11P LOSS MUTATED | 14 | 16 | 27 |
11P LOSS WILD-TYPE | 75 | 92 | 51 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
11Q LOSS MUTATED | 31 | 28 | 10 | 18 |
11Q LOSS WILD-TYPE | 116 | 68 | 142 | 95 |
P value = 0.00016 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
11Q LOSS MUTATED | 28 | 28 | 5 | 26 |
11Q LOSS WILD-TYPE | 120 | 74 | 95 | 132 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
11Q LOSS MUTATED | 58 | 10 | 25 |
11Q LOSS WILD-TYPE | 104 | 208 | 172 |
P value = 0.00608 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
12P LOSS MUTATED | 26 | 13 | 19 |
12P LOSS WILD-TYPE | 136 | 205 | 178 |
P value = 0.00027 (Fisher's exact test), Q value = 0.002
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
12Q LOSS MUTATED | 28 | 10 | 19 |
12Q LOSS WILD-TYPE | 134 | 208 | 178 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
13Q LOSS MUTATED | 57 | 35 | 26 | 45 |
13Q LOSS WILD-TYPE | 90 | 61 | 126 | 68 |
P value = 0.00176 (Fisher's exact test), Q value = 0.0096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
13Q LOSS MUTATED | 50 | 41 | 17 | 55 |
13Q LOSS WILD-TYPE | 98 | 61 | 83 | 103 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
13Q LOSS MUTATED | 112 | 20 | 54 |
13Q LOSS WILD-TYPE | 50 | 198 | 143 |
P value = 0.0112 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
13Q LOSS MUTATED | 30 | 27 | 36 |
13Q LOSS WILD-TYPE | 59 | 81 | 42 |
P value = 0.0173 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 76 | 56 |
13Q LOSS MUTATED | 20 | 31 | 10 |
13Q LOSS WILD-TYPE | 49 | 45 | 46 |
P value = 0.0483 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
13Q LOSS MUTATED | 20 | 18 | 8 |
13Q LOSS WILD-TYPE | 24 | 49 | 28 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
14Q LOSS MUTATED | 46 | 33 | 17 | 39 |
14Q LOSS WILD-TYPE | 101 | 63 | 135 | 74 |
P value = 0.00015 (Fisher's exact test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
14Q LOSS MUTATED | 43 | 35 | 10 | 47 |
14Q LOSS WILD-TYPE | 105 | 67 | 90 | 111 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
14Q LOSS MUTATED | 82 | 12 | 52 |
14Q LOSS WILD-TYPE | 80 | 206 | 145 |
P value = 0.0257 (Fisher's exact test), Q value = 0.09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
14Q LOSS MUTATED | 25 | 19 | 27 |
14Q LOSS WILD-TYPE | 64 | 89 | 51 |
P value = 4e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
15Q LOSS MUTATED | 26 | 26 | 12 | 31 |
15Q LOSS WILD-TYPE | 121 | 70 | 140 | 82 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
15Q LOSS MUTATED | 22 | 37 | 7 | 29 |
15Q LOSS WILD-TYPE | 126 | 65 | 93 | 129 |
P value = 0.00434 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
15Q LOSS MUTATED | 21 | 48 | 15 | 14 |
15Q LOSS WILD-TYPE | 135 | 135 | 72 | 106 |
P value = 0.00327 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
15Q LOSS MUTATED | 65 | 11 | 22 |
15Q LOSS WILD-TYPE | 228 | 113 | 107 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
15Q LOSS MUTATED | 58 | 20 | 28 |
15Q LOSS WILD-TYPE | 104 | 198 | 169 |
P value = 0.0331 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 58 | 44 | 45 |
15Q LOSS MUTATED | 8 | 17 | 4 | 5 |
15Q LOSS WILD-TYPE | 46 | 41 | 40 | 40 |
P value = 0.0118 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 76 | 56 |
15Q LOSS MUTATED | 10 | 20 | 4 |
15Q LOSS WILD-TYPE | 59 | 56 | 52 |
P value = 0.00358 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
15Q LOSS MUTATED | 16 | 8 | 4 |
15Q LOSS WILD-TYPE | 28 | 59 | 32 |
P value = 0.0232 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
15Q LOSS MUTATED | 11 | 15 | 2 |
15Q LOSS WILD-TYPE | 19 | 77 | 23 |
P value = 0.0353 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
16P LOSS MUTATED | 24 | 15 | 24 |
16P LOSS WILD-TYPE | 138 | 203 | 173 |
P value = 0.0132 (Fisher's exact test), Q value = 0.052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
16Q LOSS MUTATED | 31 | 20 | 32 |
16Q LOSS WILD-TYPE | 131 | 198 | 165 |
P value = 0.0478 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 58 | 44 | 45 |
16Q LOSS MUTATED | 12 | 5 | 5 | 12 |
16Q LOSS WILD-TYPE | 42 | 53 | 39 | 33 |
P value = 0.0185 (Fisher's exact test), Q value = 0.07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 76 | 56 |
16Q LOSS MUTATED | 19 | 8 | 7 |
16Q LOSS WILD-TYPE | 50 | 68 | 49 |
P value = 0.0195 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
17P LOSS MUTATED | 25 | 13 | 10 | 9 |
17P LOSS WILD-TYPE | 122 | 83 | 142 | 104 |
P value = 0.0203 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
17P LOSS MUTATED | 23 | 16 | 8 | 10 |
17P LOSS WILD-TYPE | 125 | 86 | 92 | 148 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
17P LOSS MUTATED | 37 | 5 | 23 |
17P LOSS WILD-TYPE | 125 | 213 | 174 |
P value = 0.00524 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
17Q LOSS MUTATED | 19 | 7 | 9 | 2 |
17Q LOSS WILD-TYPE | 128 | 89 | 143 | 111 |
P value = 0.0471 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 293 | 124 | 129 |
17Q LOSS MUTATED | 15 | 15 | 10 |
17Q LOSS WILD-TYPE | 278 | 109 | 119 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
17Q LOSS MUTATED | 24 | 4 | 13 |
17Q LOSS WILD-TYPE | 138 | 214 | 184 |
P value = 0.0366 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
17Q LOSS MUTATED | 10 | 3 | 3 |
17Q LOSS WILD-TYPE | 79 | 105 | 75 |
P value = 0.0471 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
18P LOSS MUTATED | 20 | 15 | 9 | 15 |
18P LOSS WILD-TYPE | 127 | 81 | 143 | 98 |
P value = 0.032 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
18P LOSS MUTATED | 19 | 16 | 4 | 20 |
18P LOSS WILD-TYPE | 129 | 86 | 96 | 138 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
18P LOSS MUTATED | 34 | 12 | 25 |
18P LOSS WILD-TYPE | 128 | 206 | 172 |
P value = 0.00639 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 76 | 56 |
18P LOSS MUTATED | 8 | 17 | 2 |
18P LOSS WILD-TYPE | 61 | 59 | 54 |
P value = 0.00758 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
18Q LOSS MUTATED | 18 | 13 | 2 | 20 |
18Q LOSS WILD-TYPE | 130 | 89 | 98 | 138 |
P value = 0.00011 (Fisher's exact test), Q value = 0.00093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
18Q LOSS MUTATED | 29 | 10 | 23 |
18Q LOSS WILD-TYPE | 133 | 208 | 174 |
P value = 0.0094 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 58 | 44 | 45 |
18Q LOSS MUTATED | 3 | 12 | 1 | 7 |
18Q LOSS WILD-TYPE | 51 | 46 | 43 | 38 |
P value = 0.00306 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 76 | 56 |
18Q LOSS MUTATED | 7 | 15 | 1 |
18Q LOSS WILD-TYPE | 62 | 61 | 55 |
P value = 0.00067 (Fisher's exact test), Q value = 0.0044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
19P LOSS MUTATED | 3 | 10 | 2 | 10 |
19P LOSS WILD-TYPE | 144 | 86 | 150 | 103 |
P value = 0.00111 (Fisher's exact test), Q value = 0.0066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
19P LOSS MUTATED | 4 | 13 | 1 | 7 |
19P LOSS WILD-TYPE | 144 | 89 | 99 | 151 |
P value = 0.0125 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
19P LOSS MUTATED | 13 | 4 | 10 |
19P LOSS WILD-TYPE | 149 | 214 | 187 |
P value = 8e-05 (Fisher's exact test), Q value = 0.00075
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
19P LOSS MUTATED | 3 | 0 | 10 |
19P LOSS WILD-TYPE | 86 | 108 | 68 |
P value = 0.0209 (Fisher's exact test), Q value = 0.076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 58 | 44 | 45 |
19P LOSS MUTATED | 0 | 7 | 3 | 1 |
19P LOSS WILD-TYPE | 54 | 51 | 41 | 44 |
P value = 0.0108 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 69 | 76 | 56 |
19P LOSS MUTATED | 0 | 8 | 3 |
19P LOSS WILD-TYPE | 69 | 68 | 53 |
P value = 0.00059 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
19Q LOSS MUTATED | 6 | 10 | 2 | 13 |
19Q LOSS WILD-TYPE | 141 | 86 | 150 | 100 |
P value = 0.00481 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
19Q LOSS MUTATED | 7 | 13 | 1 | 10 |
19Q LOSS WILD-TYPE | 141 | 89 | 99 | 148 |
P value = 0.00122 (Fisher's exact test), Q value = 0.0071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
19Q LOSS MUTATED | 16 | 4 | 15 |
19Q LOSS WILD-TYPE | 146 | 214 | 182 |
P value = 0.00108 (Fisher's exact test), Q value = 0.0066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
19Q LOSS MUTATED | 6 | 1 | 11 |
19Q LOSS WILD-TYPE | 83 | 107 | 67 |
P value = 0.00013 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
20P LOSS MUTATED | 4 | 10 | 0 | 3 |
20P LOSS WILD-TYPE | 143 | 86 | 152 | 110 |
P value = 5e-05 (Fisher's exact test), Q value = 0.00049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
20P LOSS MUTATED | 5 | 11 | 0 | 1 |
20P LOSS WILD-TYPE | 143 | 91 | 100 | 157 |
P value = 0.0365 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
20P LOSS MUTATED | 2 | 7 | 7 | 2 |
20P LOSS WILD-TYPE | 154 | 176 | 80 | 118 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
20P LOSS MUTATED | 14 | 0 | 5 |
20P LOSS WILD-TYPE | 148 | 218 | 192 |
P value = 0.0105 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
20P LOSS MUTATED | 4 | 0 | 0 |
20P LOSS WILD-TYPE | 40 | 67 | 36 |
P value = 0.00226 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
20P LOSS MUTATED | 4 | 0 | 0 |
20P LOSS WILD-TYPE | 26 | 92 | 25 |
P value = 0.00141 (Fisher's exact test), Q value = 0.008
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
20Q LOSS MUTATED | 4 | 8 | 0 | 3 |
20Q LOSS WILD-TYPE | 143 | 88 | 152 | 110 |
P value = 0.00017 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
20Q LOSS MUTATED | 4 | 10 | 0 | 1 |
20Q LOSS WILD-TYPE | 144 | 92 | 100 | 157 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
20Q LOSS MUTATED | 14 | 1 | 2 |
20Q LOSS WILD-TYPE | 148 | 217 | 195 |
P value = 0.0403 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 44 | 67 | 36 |
20Q LOSS MUTATED | 3 | 0 | 0 |
20Q LOSS WILD-TYPE | 41 | 67 | 36 |
P value = 0.0123 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 30 | 92 | 25 |
20Q LOSS MUTATED | 3 | 0 | 0 |
20Q LOSS WILD-TYPE | 27 | 92 | 25 |
P value = 0.0212 (Fisher's exact test), Q value = 0.076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
21Q LOSS MUTATED | 4 | 12 | 10 | 10 |
21Q LOSS WILD-TYPE | 143 | 84 | 142 | 103 |
P value = 0.00111 (Fisher's exact test), Q value = 0.0066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
21Q LOSS MUTATED | 5 | 17 | 6 | 8 |
21Q LOSS WILD-TYPE | 143 | 85 | 94 | 150 |
P value = 9e-04 (Fisher's exact test), Q value = 0.0056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
21Q LOSS MUTATED | 22 | 7 | 13 |
21Q LOSS WILD-TYPE | 140 | 211 | 184 |
P value = 0.00137 (Fisher's exact test), Q value = 0.0079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
21Q LOSS MUTATED | 1 | 7 | 12 |
21Q LOSS WILD-TYPE | 88 | 101 | 66 |
P value = 0.0117 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 54 | 58 | 44 | 45 |
21Q LOSS MUTATED | 0 | 4 | 6 | 1 |
21Q LOSS WILD-TYPE | 54 | 54 | 38 | 44 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
22Q LOSS MUTATED | 79 | 47 | 55 |
22Q LOSS WILD-TYPE | 83 | 171 | 142 |
P value = 0.00361 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
XP LOSS MUTATED | 20 | 32 | 28 | 22 |
XP LOSS WILD-TYPE | 127 | 64 | 124 | 91 |
P value = 0.0118 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
XP LOSS MUTATED | 21 | 32 | 19 | 30 |
XP LOSS WILD-TYPE | 127 | 70 | 81 | 128 |
P value = 0.0424 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 156 | 183 | 87 | 120 |
XP LOSS MUTATED | 24 | 48 | 17 | 18 |
XP LOSS WILD-TYPE | 132 | 135 | 70 | 102 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
XP LOSS MUTATED | 59 | 27 | 28 |
XP LOSS WILD-TYPE | 103 | 191 | 169 |
P value = 0.00019 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
XP LOSS MUTATED | 9 | 19 | 28 |
XP LOSS WILD-TYPE | 80 | 89 | 50 |
P value = 0.0184 (Fisher's exact test), Q value = 0.069
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 147 | 96 | 152 | 113 |
XQ LOSS MUTATED | 19 | 28 | 26 | 21 |
XQ LOSS WILD-TYPE | 128 | 68 | 126 | 92 |
P value = 0.0151 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 148 | 102 | 100 | 158 |
XQ LOSS MUTATED | 18 | 29 | 18 | 29 |
XQ LOSS WILD-TYPE | 130 | 73 | 82 | 129 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 162 | 218 | 197 |
XQ LOSS MUTATED | 56 | 25 | 25 |
XQ LOSS WILD-TYPE | 106 | 193 | 172 |
P value = 0.00561 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 89 | 108 | 78 |
XQ LOSS MUTATED | 9 | 19 | 23 |
XQ LOSS WILD-TYPE | 80 | 89 | 55 |
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/GBM-TP/15096483/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/GBM-TP/15125141/GBM-TP.transferedmergedcluster.txt
-
Number of patients = 577
-
Number of significantly arm-level cnvs = 82
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.