This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.
Testing the association between mutation status of 30 genes and 12 molecular subtypes across 441 patients, 27 significant findings detected with P value < 0.05 and Q value < 0.25.
-
SETD2 mutation correlated to 'METHLYATION_CNMF'.
-
BAP1 mutation correlated to 'MRNA_CNMF', 'MRNA_CHIERARCHICAL', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
-
PBRM1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
-
KDM5C mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
-
VHL mutation correlated to 'MRNA_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
-
PTEN mutation correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
-
MTOR mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.
-
FAM200A mutation correlated to 'RPPA_CNMF'.
Clinical Features |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nMutated (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
BAP1 | 44 (10%) | 397 |
0.0041 (0.0624) |
0.00034 (0.0102) |
0.0297 (0.32) |
5e-05 (0.003) |
0.00226 (0.0387) |
0.0304 (0.32) |
1e-05 (9e-04) |
1e-05 (9e-04) |
1e-05 (9e-04) |
3e-05 (0.00216) |
0.161 (0.749) |
0.696 (1.00) |
PBRM1 | 139 (32%) | 302 |
0.119 (0.684) |
0.078 (0.53) |
0.00416 (0.0624) |
1e-05 (9e-04) |
0.00025 (0.009) |
1 (1.00) |
0.00038 (0.0105) |
0.00055 (0.0132) |
0.00063 (0.0142) |
0.00706 (0.102) |
7e-05 (0.00315) |
0.049 (0.412) |
VHL | 171 (39%) | 270 |
0.00771 (0.107) |
0.0311 (0.32) |
0.355 (1.00) |
0.555 (1.00) |
0.0414 (0.382) |
0.331 (1.00) |
0.00042 (0.0108) |
0.0132 (0.176) |
0.0359 (0.349) |
0.0705 (0.501) |
0.431 (1.00) |
0.635 (1.00) |
PTEN | 17 (4%) | 424 |
0.3 (0.977) |
0.111 (0.676) |
0.185 (0.758) |
0.176 (0.749) |
0.244 (0.9) |
0.272 (0.949) |
6e-05 (0.00309) |
0.00204 (0.0367) |
0.00406 (0.0624) |
0.171 (0.749) |
0.0527 (0.431) |
1 (1.00) |
MTOR | 28 (6%) | 413 |
0.561 (1.00) |
0.134 (0.71) |
0.001 (0.0204) |
0.00033 (0.0102) |
0.936 (1.00) |
0.841 (1.00) |
0.362 (1.00) |
0.412 (1.00) |
0.942 (1.00) |
1 (1.00) |
||
SETD2 | 46 (10%) | 395 |
0.816 (1.00) |
0.134 (0.71) |
0.537 (1.00) |
9e-05 (0.0036) |
0.699 (1.00) |
0.204 (0.809) |
0.37 (1.00) |
0.0306 (0.32) |
0.316 (1.00) |
0.301 (0.977) |
0.392 (1.00) |
0.215 (0.823) |
KDM5C | 27 (6%) | 414 |
0.166 (0.749) |
0.0649 (0.497) |
0.376 (1.00) |
0.173 (0.749) |
0.048 (0.412) |
0.00115 (0.0218) |
0.02 (0.256) |
0.0327 (0.327) |
1 (1.00) |
1 (1.00) |
||
FAM200A | 5 (1%) | 436 |
0.727 (1.00) |
0.00102 (0.0204) |
0.255 (0.907) |
0.177 (0.749) |
0.506 (1.00) |
0.142 (0.719) |
0.378 (1.00) |
|||||
TP53 | 12 (3%) | 429 |
0.25 (0.9) |
0.827 (1.00) |
0.349 (1.00) |
0.149 (0.736) |
0.138 (0.717) |
0.0492 (0.412) |
0.164 (0.749) |
0.373 (1.00) |
1 (1.00) |
1 (1.00) |
||
NEFH | 5 (1%) | 436 |
0.862 (1.00) |
0.454 (1.00) |
0.979 (1.00) |
0.181 (0.757) |
0.0391 (0.371) |
0.0267 (0.31) |
0.461 (1.00) |
0.913 (1.00) |
0.338 (1.00) |
0.139 (0.717) |
||
PTCH1 | 7 (2%) | 434 |
1 (1.00) |
0.0206 (0.256) |
0.401 (1.00) |
0.158 (0.749) |
0.885 (1.00) |
0.122 (0.684) |
1 (1.00) |
0.684 (1.00) |
||||
NF2 | 6 (1%) | 435 |
0.0213 (0.256) |
0.347 (1.00) |
0.216 (0.823) |
0.573 (1.00) |
0.12 (0.684) |
0.197 (0.797) |
0.0821 (0.547) |
0.377 (1.00) |
||||
CCDC120 | 4 (1%) | 437 |
0.124 (0.684) |
0.422 (1.00) |
1 (1.00) |
0.686 (1.00) |
0.845 (1.00) |
0.829 (1.00) |
1 (1.00) |
|||||
PIK3CA | 12 (3%) | 429 |
0.422 (1.00) |
0.449 (1.00) |
0.804 (1.00) |
0.337 (1.00) |
0.24 (0.899) |
0.674 (1.00) |
0.872 (1.00) |
0.876 (1.00) |
||||
ATM | 12 (3%) | 429 |
0.933 (1.00) |
0.471 (1.00) |
0.594 (1.00) |
1 (1.00) |
0.164 (0.749) |
0.351 (1.00) |
0.101 (0.648) |
0.0723 (0.501) |
||||
KIAA1751 | 6 (1%) | 435 |
0.578 (1.00) |
0.456 (1.00) |
0.618 (1.00) |
0.0941 (0.616) |
0.433 (1.00) |
0.665 (1.00) |
0.391 (1.00) |
0.357 (1.00) |
||||
GUSB | 4 (1%) | 437 |
0.48 (1.00) |
0.31 (0.995) |
0.622 (1.00) |
0.199 (0.797) |
0.301 (0.977) |
0.554 (1.00) |
0.875 (1.00) |
|||||
ARID1A | 11 (2%) | 430 |
0.926 (1.00) |
0.378 (1.00) |
0.97 (1.00) |
1 (1.00) |
0.676 (1.00) |
0.969 (1.00) |
0.545 (1.00) |
0.118 (0.684) |
0.482 (1.00) |
0.298 (0.977) |
||
GPR50 | 3 (1%) | 438 |
0.103 (0.648) |
0.25 (0.9) |
0.0691 (0.501) |
0.792 (1.00) |
0.803 (1.00) |
0.217 (0.823) |
0.118 (0.684) |
0.436 (1.00) |
||||
PCK1 | 5 (1%) | 436 |
0.387 (1.00) |
0.618 (1.00) |
1 (1.00) |
0.815 (1.00) |
0.737 (1.00) |
0.744 (1.00) |
0.732 (1.00) |
0.404 (1.00) |
||||
DPCR1 | 6 (1%) | 435 |
0.288 (0.977) |
0.582 (1.00) |
0.212 (0.823) |
1 (1.00) |
0.176 (0.749) |
0.0444 (0.399) |
0.766 (1.00) |
1 (1.00) |
||||
NFAT5 | 6 (1%) | 435 |
0.493 (1.00) |
0.878 (1.00) |
0.246 (0.9) |
0.529 (1.00) |
0.265 (0.935) |
0.406 (1.00) |
0.335 (1.00) |
0.0717 (0.501) |
||||
EGFR | 7 (2%) | 434 |
0.71 (1.00) |
0.681 (1.00) |
0.747 (1.00) |
0.491 (1.00) |
0.478 (1.00) |
0.942 (1.00) |
1 (1.00) |
0.0714 (0.501) |
||||
TRIM6 | 5 (1%) | 436 |
1 (1.00) |
1 (1.00) |
0.746 (1.00) |
0.0587 (0.469) |
1 (1.00) |
0.173 (0.749) |
0.375 (1.00) |
0.556 (1.00) |
||||
RBMX | 4 (1%) | 437 |
0.692 (1.00) |
0.618 (1.00) |
0.109 (0.676) |
0.462 (1.00) |
0.428 (1.00) |
0.48 (1.00) |
0.342 (1.00) |
0.164 (0.749) |
||||
GPR172B | 4 (1%) | 437 |
1 (1.00) |
0.132 (0.71) |
0.792 (1.00) |
0.538 (1.00) |
1 (1.00) |
0.614 (1.00) |
1 (1.00) |
|||||
FGFR3 | 4 (1%) | 437 |
0.694 (1.00) |
0.836 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.479 (1.00) |
0.832 (1.00) |
0.287 (0.977) |
||||
ARAP3 | 3 (1%) | 438 |
0.618 (1.00) |
1 (1.00) |
1 (1.00) |
0.607 (1.00) |
1 (1.00) |
0.792 (1.00) |
0.833 (1.00) |
|||||
OPTC | 4 (1%) | 437 |
0.585 (1.00) |
0.185 (0.758) |
1 (1.00) |
0.144 (0.72) |
0.832 (1.00) |
0.29 (0.977) |
||||||
GOLGA5 | 5 (1%) | 436 |
0.06 (0.469) |
0.297 (0.977) |
0.73 (1.00) |
0.528 (1.00) |
0.601 (1.00) |
1 (1.00) |
0.517 (1.00) |
P value = 0.816 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 21 | 17 | 10 |
SETD2 MUTATED | 2 | 2 | 0 |
SETD2 WILD-TYPE | 19 | 15 | 10 |
P value = 0.134 (Fisher's exact test), Q value = 0.71
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 6 | 3 | 10 | 10 | 7 | 8 |
SETD2 MUTATED | 1 | 2 | 0 | 0 | 1 | 0 | 0 |
SETD2 WILD-TYPE | 3 | 4 | 3 | 10 | 9 | 7 | 8 |
P value = 0.537 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
SETD2 MUTATED | 17 | 13 | 16 |
SETD2 WILD-TYPE | 177 | 99 | 116 |
P value = 9e-05 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
SETD2 MUTATED | 6 | 2 | 22 |
SETD2 WILD-TYPE | 98 | 60 | 75 |
P value = 0.699 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
SETD2 MUTATED | 14 | 6 | 8 | 6 | 7 | 2 |
SETD2 WILD-TYPE | 83 | 51 | 59 | 61 | 65 | 39 |
P value = 0.204 (Fisher's exact test), Q value = 0.81
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
SETD2 MUTATED | 15 | 14 | 14 |
SETD2 WILD-TYPE | 92 | 164 | 102 |
P value = 0.37 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
SETD2 MUTATED | 9 | 15 | 22 |
SETD2 WILD-TYPE | 78 | 166 | 149 |
P value = 0.0306 (Fisher's exact test), Q value = 0.32
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
SETD2 MUTATED | 17 | 3 | 11 | 15 | 0 | 0 |
SETD2 WILD-TYPE | 85 | 22 | 140 | 101 | 30 | 15 |
P value = 0.316 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
SETD2 MUTATED | 7 | 17 | 20 |
SETD2 WILD-TYPE | 94 | 158 | 135 |
P value = 0.301 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
SETD2 MUTATED | 8 | 12 | 18 | 6 |
SETD2 WILD-TYPE | 110 | 103 | 145 | 29 |
P value = 0.392 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 20 | 43 | 28 |
SETD2 MUTATED | 0 | 3 | 7 | 3 |
SETD2 WILD-TYPE | 16 | 17 | 36 | 25 |
P value = 0.215 (Fisher's exact test), Q value = 0.82
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 45 | 44 |
SETD2 MUTATED | 0 | 7 | 6 |
SETD2 WILD-TYPE | 18 | 38 | 38 |
P value = 0.0041 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 21 | 17 | 10 |
BAP1 MUTATED | 1 | 7 | 0 |
BAP1 WILD-TYPE | 20 | 10 | 10 |
P value = 0.00034 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 6 | 3 | 10 | 10 | 7 | 8 |
BAP1 MUTATED | 0 | 0 | 0 | 7 | 1 | 0 | 0 |
BAP1 WILD-TYPE | 4 | 6 | 3 | 3 | 9 | 7 | 8 |
P value = 0.0297 (Fisher's exact test), Q value = 0.32
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
BAP1 MUTATED | 12 | 12 | 20 |
BAP1 WILD-TYPE | 182 | 100 | 112 |
P value = 5e-05 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
BAP1 MUTATED | 1 | 8 | 17 |
BAP1 WILD-TYPE | 103 | 54 | 80 |
P value = 0.00226 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
BAP1 MUTATED | 4 | 12 | 8 | 2 | 10 | 2 |
BAP1 WILD-TYPE | 93 | 45 | 59 | 65 | 62 | 39 |
P value = 0.0304 (Fisher's exact test), Q value = 0.32
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
BAP1 MUTATED | 11 | 10 | 17 |
BAP1 WILD-TYPE | 96 | 168 | 99 |
P value = 1e-05 (Fisher's exact test), Q value = 9e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
BAP1 MUTATED | 9 | 5 | 30 |
BAP1 WILD-TYPE | 78 | 176 | 141 |
P value = 1e-05 (Fisher's exact test), Q value = 9e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
BAP1 MUTATED | 4 | 0 | 4 | 17 | 19 | 0 |
BAP1 WILD-TYPE | 98 | 25 | 147 | 99 | 11 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 9e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
BAP1 MUTATED | 10 | 5 | 29 |
BAP1 WILD-TYPE | 91 | 170 | 126 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
BAP1 MUTATED | 12 | 22 | 4 | 6 |
BAP1 WILD-TYPE | 106 | 93 | 159 | 29 |
P value = 0.161 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 20 | 43 | 28 |
BAP1 MUTATED | 2 | 1 | 1 | 4 |
BAP1 WILD-TYPE | 14 | 19 | 42 | 24 |
P value = 0.696 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 45 | 44 |
BAP1 MUTATED | 2 | 4 | 2 |
BAP1 WILD-TYPE | 16 | 41 | 42 |
P value = 0.119 (Fisher's exact test), Q value = 0.68
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 21 | 17 | 10 |
PBRM1 MUTATED | 9 | 3 | 1 |
PBRM1 WILD-TYPE | 12 | 14 | 9 |
P value = 0.078 (Fisher's exact test), Q value = 0.53
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 6 | 3 | 10 | 10 | 7 | 8 |
PBRM1 MUTATED | 2 | 3 | 0 | 0 | 4 | 3 | 1 |
PBRM1 WILD-TYPE | 2 | 3 | 3 | 10 | 6 | 4 | 7 |
P value = 0.00416 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
PBRM1 MUTATED | 75 | 23 | 41 |
PBRM1 WILD-TYPE | 119 | 89 | 91 |
P value = 1e-05 (Fisher's exact test), Q value = 9e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
PBRM1 MUTATED | 45 | 6 | 44 |
PBRM1 WILD-TYPE | 59 | 56 | 53 |
P value = 0.00025 (Fisher's exact test), Q value = 0.009
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
PBRM1 MUTATED | 50 | 16 | 21 | 18 | 13 | 11 |
PBRM1 WILD-TYPE | 47 | 41 | 46 | 49 | 59 | 30 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
PBRM1 MUTATED | 34 | 58 | 37 |
PBRM1 WILD-TYPE | 73 | 120 | 79 |
P value = 0.00038 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
PBRM1 MUTATED | 15 | 74 | 49 |
PBRM1 WILD-TYPE | 72 | 107 | 122 |
P value = 0.00055 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
PBRM1 MUTATED | 40 | 5 | 59 | 30 | 3 | 1 |
PBRM1 WILD-TYPE | 62 | 20 | 92 | 86 | 27 | 14 |
P value = 0.00063 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
PBRM1 MUTATED | 23 | 73 | 39 |
PBRM1 WILD-TYPE | 78 | 102 | 116 |
P value = 0.00706 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
PBRM1 MUTATED | 27 | 32 | 67 | 9 |
PBRM1 WILD-TYPE | 91 | 83 | 96 | 26 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 20 | 43 | 28 |
PBRM1 MUTATED | 4 | 1 | 23 | 4 |
PBRM1 WILD-TYPE | 12 | 19 | 20 | 24 |
P value = 0.049 (Fisher's exact test), Q value = 0.41
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 45 | 44 |
PBRM1 MUTATED | 4 | 9 | 19 |
PBRM1 WILD-TYPE | 14 | 36 | 25 |
P value = 0.166 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
KDM5C MUTATED | 13 | 3 | 11 |
KDM5C WILD-TYPE | 181 | 109 | 121 |
P value = 0.0649 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
KDM5C MUTATED | 4 | 2 | 11 |
KDM5C WILD-TYPE | 100 | 60 | 86 |
P value = 0.376 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
KDM5C MUTATED | 5 | 7 | 5 | 2 | 3 | 2 |
KDM5C WILD-TYPE | 92 | 50 | 62 | 65 | 69 | 39 |
P value = 0.173 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
KDM5C MUTATED | 10 | 7 | 7 |
KDM5C WILD-TYPE | 97 | 171 | 109 |
P value = 0.048 (Fisher's exact test), Q value = 0.41
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
KDM5C MUTATED | 2 | 8 | 16 |
KDM5C WILD-TYPE | 85 | 173 | 155 |
P value = 0.00115 (Fisher's exact test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
KDM5C MUTATED | 14 | 1 | 2 | 9 | 0 | 0 |
KDM5C WILD-TYPE | 88 | 24 | 149 | 107 | 30 | 15 |
P value = 0.02 (Fisher's exact test), Q value = 0.26
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
KDM5C MUTATED | 2 | 9 | 16 |
KDM5C WILD-TYPE | 99 | 166 | 139 |
P value = 0.0327 (Fisher's exact test), Q value = 0.33
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
KDM5C MUTATED | 4 | 11 | 7 | 5 |
KDM5C WILD-TYPE | 114 | 104 | 156 | 30 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 20 | 43 | 28 |
KDM5C MUTATED | 0 | 0 | 2 | 1 |
KDM5C WILD-TYPE | 16 | 20 | 41 | 27 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 45 | 44 |
KDM5C MUTATED | 0 | 2 | 1 |
KDM5C WILD-TYPE | 18 | 43 | 43 |
P value = 0.00771 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 21 | 17 | 10 |
VHL MUTATED | 13 | 4 | 1 |
VHL WILD-TYPE | 8 | 13 | 9 |
P value = 0.0311 (Fisher's exact test), Q value = 0.32
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 6 | 3 | 10 | 10 | 7 | 8 |
VHL MUTATED | 2 | 0 | 0 | 4 | 6 | 5 | 1 |
VHL WILD-TYPE | 2 | 6 | 3 | 6 | 4 | 2 | 7 |
P value = 0.355 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
VHL MUTATED | 83 | 40 | 48 |
VHL WILD-TYPE | 111 | 72 | 84 |
P value = 0.555 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
VHL MUTATED | 49 | 24 | 41 |
VHL WILD-TYPE | 55 | 38 | 56 |
P value = 0.0414 (Fisher's exact test), Q value = 0.38
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
VHL MUTATED | 50 | 20 | 22 | 20 | 28 | 20 |
VHL WILD-TYPE | 47 | 37 | 45 | 47 | 44 | 21 |
P value = 0.331 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
VHL MUTATED | 41 | 78 | 41 |
VHL WILD-TYPE | 66 | 100 | 75 |
P value = 0.00042 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
VHL MUTATED | 22 | 89 | 60 |
VHL WILD-TYPE | 65 | 92 | 111 |
P value = 0.0132 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
VHL MUTATED | 43 | 6 | 70 | 41 | 10 | 1 |
VHL WILD-TYPE | 59 | 19 | 81 | 75 | 20 | 14 |
P value = 0.0359 (Fisher's exact test), Q value = 0.35
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
VHL MUTATED | 41 | 78 | 48 |
VHL WILD-TYPE | 60 | 97 | 107 |
P value = 0.0705 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
VHL MUTATED | 45 | 36 | 75 | 11 |
VHL WILD-TYPE | 73 | 79 | 88 | 24 |
P value = 0.431 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 20 | 43 | 28 |
VHL MUTATED | 6 | 6 | 18 | 15 |
VHL WILD-TYPE | 10 | 14 | 25 | 13 |
P value = 0.635 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 45 | 44 |
VHL MUTATED | 6 | 21 | 18 |
VHL WILD-TYPE | 12 | 24 | 26 |
P value = 0.3 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 21 | 17 | 10 |
PTEN MUTATED | 0 | 2 | 1 |
PTEN WILD-TYPE | 21 | 15 | 9 |
P value = 0.111 (Fisher's exact test), Q value = 0.68
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 4 | 6 | 3 | 10 | 10 | 7 | 8 |
PTEN MUTATED | 0 | 2 | 0 | 0 | 0 | 0 | 1 |
PTEN WILD-TYPE | 4 | 4 | 3 | 10 | 10 | 7 | 7 |
P value = 0.185 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
PTEN MUTATED | 4 | 4 | 8 |
PTEN WILD-TYPE | 190 | 108 | 124 |
P value = 0.176 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
PTEN MUTATED | 1 | 3 | 5 |
PTEN WILD-TYPE | 103 | 59 | 92 |
P value = 0.244 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
PTEN MUTATED | 2 | 6 | 2 | 2 | 4 | 1 |
PTEN WILD-TYPE | 95 | 51 | 65 | 65 | 68 | 40 |
P value = 0.272 (Fisher's exact test), Q value = 0.95
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
PTEN MUTATED | 3 | 6 | 8 |
PTEN WILD-TYPE | 104 | 172 | 108 |
P value = 6e-05 (Fisher's exact test), Q value = 0.0031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
PTEN MUTATED | 3 | 0 | 14 |
PTEN WILD-TYPE | 84 | 181 | 157 |
P value = 0.00204 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
PTEN MUTATED | 5 | 1 | 0 | 10 | 0 | 1 |
PTEN WILD-TYPE | 97 | 24 | 151 | 106 | 30 | 14 |
P value = 0.00406 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
PTEN MUTATED | 6 | 1 | 10 |
PTEN WILD-TYPE | 95 | 174 | 145 |
P value = 0.171 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
PTEN MUTATED | 6 | 5 | 3 | 3 |
PTEN WILD-TYPE | 112 | 110 | 160 | 32 |
P value = 0.0527 (Fisher's exact test), Q value = 0.43
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 20 | 43 | 28 |
PTEN MUTATED | 0 | 0 | 0 | 3 |
PTEN WILD-TYPE | 16 | 20 | 43 | 25 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 45 | 44 |
PTEN MUTATED | 0 | 2 | 1 |
PTEN WILD-TYPE | 18 | 43 | 43 |
P value = 0.561 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
MTOR MUTATED | 11 | 6 | 11 |
MTOR WILD-TYPE | 183 | 106 | 121 |
P value = 0.134 (Fisher's exact test), Q value = 0.71
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
MTOR MUTATED | 7 | 3 | 13 |
MTOR WILD-TYPE | 97 | 59 | 84 |
P value = 0.001 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
MTOR MUTATED | 7 | 8 | 9 | 1 | 1 | 0 |
MTOR WILD-TYPE | 90 | 49 | 58 | 66 | 71 | 41 |
P value = 0.00033 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
MTOR MUTATED | 8 | 3 | 15 |
MTOR WILD-TYPE | 99 | 175 | 101 |
P value = 0.936 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
MTOR MUTATED | 5 | 11 | 12 |
MTOR WILD-TYPE | 82 | 170 | 159 |
P value = 0.841 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
MTOR MUTATED | 5 | 2 | 9 | 10 | 1 | 1 |
MTOR WILD-TYPE | 97 | 23 | 142 | 106 | 29 | 14 |
P value = 0.362 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
MTOR MUTATED | 7 | 8 | 13 |
MTOR WILD-TYPE | 94 | 167 | 142 |
P value = 0.412 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
MTOR MUTATED | 8 | 10 | 7 | 3 |
MTOR WILD-TYPE | 110 | 105 | 156 | 32 |
P value = 0.942 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 20 | 43 | 28 |
MTOR MUTATED | 1 | 1 | 4 | 1 |
MTOR WILD-TYPE | 15 | 19 | 39 | 27 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 45 | 44 |
MTOR MUTATED | 1 | 3 | 3 |
MTOR WILD-TYPE | 17 | 42 | 41 |
P value = 0.25 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
TP53 MUTATED | 3 | 3 | 6 |
TP53 WILD-TYPE | 191 | 109 | 126 |
P value = 0.827 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
TP53 MUTATED | 3 | 3 | 3 |
TP53 WILD-TYPE | 101 | 59 | 94 |
P value = 0.349 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
TP53 MUTATED | 0 | 2 | 2 | 3 | 2 | 1 |
TP53 WILD-TYPE | 97 | 55 | 65 | 64 | 70 | 40 |
P value = 0.149 (Fisher's exact test), Q value = 0.74
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
TP53 MUTATED | 1 | 3 | 6 |
TP53 WILD-TYPE | 106 | 175 | 110 |
P value = 0.138 (Fisher's exact test), Q value = 0.72
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
TP53 MUTATED | 4 | 2 | 6 |
TP53 WILD-TYPE | 83 | 179 | 165 |
P value = 0.0492 (Fisher's exact test), Q value = 0.41
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
TP53 MUTATED | 1 | 0 | 2 | 6 | 1 | 2 |
TP53 WILD-TYPE | 101 | 25 | 149 | 110 | 29 | 13 |
P value = 0.164 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
TP53 MUTATED | 3 | 2 | 7 |
TP53 WILD-TYPE | 98 | 173 | 148 |
P value = 0.373 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
TP53 MUTATED | 5 | 4 | 2 | 1 |
TP53 WILD-TYPE | 113 | 111 | 161 | 34 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 20 | 43 | 28 |
TP53 MUTATED | 1 | 1 | 2 | 1 |
TP53 WILD-TYPE | 15 | 19 | 41 | 27 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 45 | 44 |
TP53 MUTATED | 1 | 2 | 2 |
TP53 WILD-TYPE | 17 | 43 | 42 |
P value = 0.727 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
FAM200A MUTATED | 2 | 2 | 1 |
FAM200A WILD-TYPE | 192 | 110 | 131 |
P value = 0.00102 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
FAM200A MUTATED | 0 | 0 | 0 | 0 | 0 | 3 |
FAM200A WILD-TYPE | 97 | 57 | 67 | 67 | 72 | 38 |
P value = 0.255 (Fisher's exact test), Q value = 0.91
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
FAM200A MUTATED | 0 | 3 | 0 |
FAM200A WILD-TYPE | 107 | 175 | 116 |
P value = 0.177 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
FAM200A MUTATED | 1 | 4 | 0 |
FAM200A WILD-TYPE | 86 | 177 | 171 |
P value = 0.506 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
FAM200A MUTATED | 1 | 0 | 4 | 0 | 0 | 0 |
FAM200A WILD-TYPE | 101 | 25 | 147 | 116 | 30 | 15 |
P value = 0.142 (Fisher's exact test), Q value = 0.72
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
FAM200A MUTATED | 1 | 4 | 0 |
FAM200A WILD-TYPE | 100 | 171 | 155 |
P value = 0.378 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
FAM200A MUTATED | 1 | 0 | 4 | 0 |
FAM200A WILD-TYPE | 117 | 115 | 159 | 35 |
P value = 0.862 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
NEFH MUTATED | 3 | 1 | 1 |
NEFH WILD-TYPE | 191 | 111 | 131 |
P value = 0.454 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
NEFH MUTATED | 3 | 0 | 1 |
NEFH WILD-TYPE | 101 | 62 | 96 |
P value = 0.979 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
NEFH MUTATED | 2 | 0 | 1 | 1 | 1 | 0 |
NEFH WILD-TYPE | 95 | 57 | 66 | 66 | 71 | 41 |
P value = 0.181 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
NEFH MUTATED | 0 | 2 | 3 |
NEFH WILD-TYPE | 107 | 176 | 113 |
P value = 0.0391 (Fisher's exact test), Q value = 0.37
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
NEFH MUTATED | 3 | 0 | 2 |
NEFH WILD-TYPE | 84 | 181 | 169 |
P value = 0.0267 (Fisher's exact test), Q value = 0.31
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
NEFH MUTATED | 1 | 2 | 0 | 1 | 1 | 0 |
NEFH WILD-TYPE | 101 | 23 | 151 | 115 | 29 | 15 |
P value = 0.461 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
NEFH MUTATED | 0 | 3 | 2 |
NEFH WILD-TYPE | 101 | 172 | 153 |
P value = 0.913 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
NEFH MUTATED | 1 | 2 | 2 | 0 |
NEFH WILD-TYPE | 117 | 113 | 161 | 35 |
P value = 0.338 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 20 | 43 | 28 |
NEFH MUTATED | 0 | 0 | 3 | 0 |
NEFH WILD-TYPE | 16 | 20 | 40 | 28 |
P value = 0.139 (Fisher's exact test), Q value = 0.72
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 45 | 44 |
NEFH MUTATED | 0 | 0 | 3 |
NEFH WILD-TYPE | 18 | 45 | 41 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
PTCH1 MUTATED | 3 | 2 | 2 |
PTCH1 WILD-TYPE | 191 | 110 | 130 |
P value = 0.0206 (Fisher's exact test), Q value = 0.26
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
PTCH1 MUTATED | 0 | 0 | 4 |
PTCH1 WILD-TYPE | 104 | 62 | 93 |
P value = 0.401 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
PTCH1 MUTATED | 2 | 3 | 0 | 1 | 1 | 0 |
PTCH1 WILD-TYPE | 95 | 54 | 67 | 66 | 71 | 41 |
P value = 0.158 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
PTCH1 MUTATED | 2 | 1 | 4 |
PTCH1 WILD-TYPE | 105 | 177 | 112 |
P value = 0.885 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
PTCH1 MUTATED | 1 | 4 | 2 |
PTCH1 WILD-TYPE | 86 | 177 | 169 |
P value = 0.122 (Fisher's exact test), Q value = 0.68
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
PTCH1 MUTATED | 3 | 0 | 2 | 0 | 2 | 0 |
PTCH1 WILD-TYPE | 99 | 25 | 149 | 116 | 28 | 15 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
PTCH1 MUTATED | 1 | 3 | 3 |
PTCH1 WILD-TYPE | 100 | 172 | 152 |
P value = 0.684 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
PTCH1 MUTATED | 1 | 3 | 3 | 0 |
PTCH1 WILD-TYPE | 117 | 112 | 160 | 35 |
P value = 0.0213 (Fisher's exact test), Q value = 0.26
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
NF2 MUTATED | 1 | 0 | 5 |
NF2 WILD-TYPE | 193 | 112 | 127 |
P value = 0.347 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
NF2 MUTATED | 0 | 1 | 2 |
NF2 WILD-TYPE | 104 | 61 | 95 |
P value = 0.216 (Fisher's exact test), Q value = 0.82
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
NF2 MUTATED | 1 | 1 | 0 | 3 | 0 | 1 |
NF2 WILD-TYPE | 96 | 56 | 67 | 64 | 72 | 40 |
P value = 0.573 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
NF2 MUTATED | 1 | 2 | 3 |
NF2 WILD-TYPE | 106 | 176 | 113 |
P value = 0.12 (Fisher's exact test), Q value = 0.68
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
NF2 MUTATED | 0 | 1 | 5 |
NF2 WILD-TYPE | 87 | 180 | 166 |
P value = 0.197 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
NF2 MUTATED | 0 | 0 | 1 | 4 | 1 | 0 |
NF2 WILD-TYPE | 102 | 25 | 150 | 112 | 29 | 15 |
P value = 0.0821 (Fisher's exact test), Q value = 0.55
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
NF2 MUTATED | 0 | 1 | 5 |
NF2 WILD-TYPE | 101 | 174 | 150 |
P value = 0.377 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
NF2 MUTATED | 3 | 1 | 1 | 1 |
NF2 WILD-TYPE | 115 | 114 | 162 | 34 |
P value = 0.124 (Fisher's exact test), Q value = 0.68
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
CCDC120 MUTATED | 0 | 2 | 2 |
CCDC120 WILD-TYPE | 194 | 110 | 130 |
P value = 0.422 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
CCDC120 MUTATED | 1 | 0 | 2 | 0 | 0 | 0 |
CCDC120 WILD-TYPE | 96 | 57 | 65 | 67 | 72 | 41 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
CCDC120 MUTATED | 1 | 1 | 1 |
CCDC120 WILD-TYPE | 106 | 177 | 115 |
P value = 0.686 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
CCDC120 MUTATED | 1 | 1 | 2 |
CCDC120 WILD-TYPE | 86 | 180 | 169 |
P value = 0.845 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
CCDC120 MUTATED | 2 | 0 | 1 | 1 | 0 | 0 |
CCDC120 WILD-TYPE | 100 | 25 | 150 | 115 | 30 | 15 |
P value = 0.829 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
CCDC120 MUTATED | 1 | 1 | 2 |
CCDC120 WILD-TYPE | 100 | 174 | 153 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
CCDC120 MUTATED | 1 | 1 | 2 | 0 |
CCDC120 WILD-TYPE | 117 | 114 | 161 | 35 |
P value = 0.422 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
PIK3CA MUTATED | 7 | 1 | 4 |
PIK3CA WILD-TYPE | 187 | 111 | 128 |
P value = 0.449 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
PIK3CA MUTATED | 3 | 0 | 3 |
PIK3CA WILD-TYPE | 101 | 62 | 94 |
P value = 0.804 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
PIK3CA MUTATED | 4 | 1 | 1 | 2 | 3 | 0 |
PIK3CA WILD-TYPE | 93 | 56 | 66 | 65 | 69 | 41 |
P value = 0.337 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
PIK3CA MUTATED | 5 | 3 | 3 |
PIK3CA WILD-TYPE | 102 | 175 | 113 |
P value = 0.24 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
PIK3CA MUTATED | 0 | 6 | 6 |
PIK3CA WILD-TYPE | 87 | 175 | 165 |
P value = 0.674 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
PIK3CA MUTATED | 1 | 0 | 5 | 5 | 1 | 0 |
PIK3CA WILD-TYPE | 101 | 25 | 146 | 111 | 29 | 15 |
P value = 0.872 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
PIK3CA MUTATED | 3 | 4 | 5 |
PIK3CA WILD-TYPE | 98 | 171 | 150 |
P value = 0.876 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
PIK3CA MUTATED | 4 | 2 | 5 | 1 |
PIK3CA WILD-TYPE | 114 | 113 | 158 | 34 |
P value = 0.933 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
ATM MUTATED | 6 | 3 | 3 |
ATM WILD-TYPE | 188 | 109 | 129 |
P value = 0.471 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
ATM MUTATED | 5 | 1 | 2 |
ATM WILD-TYPE | 99 | 61 | 95 |
P value = 0.594 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
ATM MUTATED | 3 | 1 | 0 | 3 | 3 | 1 |
ATM WILD-TYPE | 94 | 56 | 67 | 64 | 69 | 40 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
ATM MUTATED | 3 | 5 | 3 |
ATM WILD-TYPE | 104 | 173 | 113 |
P value = 0.164 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
ATM MUTATED | 0 | 7 | 5 |
ATM WILD-TYPE | 87 | 174 | 166 |
P value = 0.351 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
ATM MUTATED | 1 | 0 | 8 | 2 | 1 | 0 |
ATM WILD-TYPE | 101 | 25 | 143 | 114 | 29 | 15 |
P value = 0.101 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
ATM MUTATED | 0 | 7 | 4 |
ATM WILD-TYPE | 101 | 168 | 151 |
P value = 0.0723 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
ATM MUTATED | 0 | 4 | 5 | 2 |
ATM WILD-TYPE | 118 | 111 | 158 | 33 |
P value = 0.578 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
KIAA1751 MUTATED | 2 | 1 | 3 |
KIAA1751 WILD-TYPE | 192 | 111 | 129 |
P value = 0.456 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
KIAA1751 MUTATED | 3 | 0 | 2 |
KIAA1751 WILD-TYPE | 101 | 62 | 95 |
P value = 0.618 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
KIAA1751 MUTATED | 2 | 0 | 1 | 2 | 0 | 0 |
KIAA1751 WILD-TYPE | 95 | 57 | 66 | 65 | 72 | 41 |
P value = 0.0941 (Fisher's exact test), Q value = 0.62
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
KIAA1751 MUTATED | 2 | 0 | 3 |
KIAA1751 WILD-TYPE | 105 | 178 | 113 |
P value = 0.433 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
KIAA1751 MUTATED | 2 | 2 | 1 |
KIAA1751 WILD-TYPE | 85 | 179 | 170 |
P value = 0.665 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
KIAA1751 MUTATED | 3 | 0 | 1 | 1 | 0 | 0 |
KIAA1751 WILD-TYPE | 99 | 25 | 150 | 115 | 30 | 15 |
P value = 0.391 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
KIAA1751 MUTATED | 0 | 4 | 2 |
KIAA1751 WILD-TYPE | 101 | 171 | 153 |
P value = 0.357 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
KIAA1751 MUTATED | 0 | 3 | 3 | 0 |
KIAA1751 WILD-TYPE | 118 | 112 | 160 | 35 |
P value = 0.48 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
GUSB MUTATED | 3 | 0 | 1 |
GUSB WILD-TYPE | 191 | 112 | 131 |
P value = 0.31 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
GUSB MUTATED | 0 | 0 | 1 | 0 | 2 | 0 |
GUSB WILD-TYPE | 97 | 57 | 66 | 67 | 70 | 41 |
P value = 0.622 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
GUSB MUTATED | 1 | 2 | 0 |
GUSB WILD-TYPE | 106 | 176 | 116 |
P value = 0.199 (Fisher's exact test), Q value = 0.8
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
GUSB MUTATED | 1 | 0 | 3 |
GUSB WILD-TYPE | 86 | 181 | 168 |
P value = 0.301 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
GUSB MUTATED | 1 | 0 | 0 | 2 | 1 | 0 |
GUSB WILD-TYPE | 101 | 25 | 151 | 114 | 29 | 15 |
P value = 0.554 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
GUSB MUTATED | 2 | 1 | 1 |
GUSB WILD-TYPE | 99 | 174 | 154 |
P value = 0.875 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
GUSB MUTATED | 2 | 1 | 1 | 0 |
GUSB WILD-TYPE | 116 | 114 | 162 | 35 |
P value = 0.926 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
ARID1A MUTATED | 5 | 2 | 4 |
ARID1A WILD-TYPE | 189 | 110 | 128 |
P value = 0.378 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
ARID1A MUTATED | 5 | 2 | 1 |
ARID1A WILD-TYPE | 99 | 60 | 96 |
P value = 0.97 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
ARID1A MUTATED | 3 | 1 | 1 | 2 | 3 | 1 |
ARID1A WILD-TYPE | 94 | 56 | 66 | 65 | 69 | 40 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
ARID1A MUTATED | 3 | 5 | 3 |
ARID1A WILD-TYPE | 104 | 173 | 113 |
P value = 0.676 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
ARID1A MUTATED | 1 | 6 | 4 |
ARID1A WILD-TYPE | 86 | 175 | 167 |
P value = 0.969 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
ARID1A MUTATED | 2 | 0 | 5 | 3 | 1 | 0 |
ARID1A WILD-TYPE | 100 | 25 | 146 | 113 | 29 | 15 |
P value = 0.545 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
ARID1A MUTATED | 1 | 6 | 4 |
ARID1A WILD-TYPE | 100 | 169 | 151 |
P value = 0.118 (Fisher's exact test), Q value = 0.68
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
ARID1A MUTATED | 1 | 1 | 8 | 1 |
ARID1A WILD-TYPE | 117 | 114 | 155 | 34 |
P value = 0.482 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 20 | 43 | 28 |
ARID1A MUTATED | 1 | 0 | 2 | 0 |
ARID1A WILD-TYPE | 15 | 20 | 41 | 28 |
P value = 0.298 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 18 | 45 | 44 |
ARID1A MUTATED | 1 | 0 | 2 |
ARID1A WILD-TYPE | 17 | 45 | 42 |
P value = 0.103 (Fisher's exact test), Q value = 0.65
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
GPR50 MUTATED | 0 | 2 | 1 |
GPR50 WILD-TYPE | 194 | 110 | 131 |
P value = 0.25 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
GPR50 MUTATED | 1 | 2 | 0 |
GPR50 WILD-TYPE | 103 | 60 | 97 |
P value = 0.0691 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
GPR50 MUTATED | 0 | 0 | 0 | 2 | 0 | 1 |
GPR50 WILD-TYPE | 97 | 57 | 67 | 65 | 72 | 40 |
P value = 0.792 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
GPR50 MUTATED | 0 | 2 | 1 |
GPR50 WILD-TYPE | 107 | 176 | 115 |
P value = 0.803 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
GPR50 MUTATED | 1 | 1 | 1 |
GPR50 WILD-TYPE | 86 | 180 | 170 |
P value = 0.217 (Fisher's exact test), Q value = 0.82
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
GPR50 MUTATED | 0 | 0 | 1 | 1 | 0 | 1 |
GPR50 WILD-TYPE | 102 | 25 | 150 | 115 | 30 | 14 |
P value = 0.118 (Fisher's exact test), Q value = 0.68
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
GPR50 MUTATED | 2 | 0 | 1 |
GPR50 WILD-TYPE | 99 | 175 | 154 |
P value = 0.436 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
GPR50 MUTATED | 2 | 1 | 0 | 0 |
GPR50 WILD-TYPE | 116 | 114 | 163 | 35 |
P value = 0.387 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
PCK1 MUTATED | 4 | 0 | 1 |
PCK1 WILD-TYPE | 190 | 112 | 131 |
P value = 0.618 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
PCK1 MUTATED | 1 | 0 | 2 |
PCK1 WILD-TYPE | 103 | 62 | 95 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
PCK1 MUTATED | 1 | 0 | 1 | 1 | 1 | 0 |
PCK1 WILD-TYPE | 96 | 57 | 66 | 66 | 71 | 41 |
P value = 0.815 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
PCK1 MUTATED | 1 | 1 | 2 |
PCK1 WILD-TYPE | 106 | 177 | 114 |
P value = 0.737 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
PCK1 MUTATED | 0 | 3 | 2 |
PCK1 WILD-TYPE | 87 | 178 | 169 |
P value = 0.744 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
PCK1 MUTATED | 0 | 0 | 3 | 2 | 0 | 0 |
PCK1 WILD-TYPE | 102 | 25 | 148 | 114 | 30 | 15 |
P value = 0.732 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
PCK1 MUTATED | 2 | 2 | 1 |
PCK1 WILD-TYPE | 99 | 173 | 154 |
P value = 0.404 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
PCK1 MUTATED | 3 | 0 | 2 | 0 |
PCK1 WILD-TYPE | 115 | 115 | 161 | 35 |
P value = 0.288 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
DPCR1 MUTATED | 1 | 3 | 2 |
DPCR1 WILD-TYPE | 193 | 109 | 130 |
P value = 0.582 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
DPCR1 MUTATED | 1 | 2 | 3 |
DPCR1 WILD-TYPE | 103 | 60 | 94 |
P value = 0.212 (Fisher's exact test), Q value = 0.82
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
DPCR1 MUTATED | 0 | 2 | 2 | 0 | 1 | 1 |
DPCR1 WILD-TYPE | 97 | 55 | 65 | 67 | 71 | 40 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
DPCR1 MUTATED | 1 | 3 | 2 |
DPCR1 WILD-TYPE | 106 | 175 | 114 |
P value = 0.176 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
DPCR1 MUTATED | 3 | 1 | 2 |
DPCR1 WILD-TYPE | 84 | 180 | 169 |
P value = 0.0444 (Fisher's exact test), Q value = 0.4
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
DPCR1 MUTATED | 1 | 1 | 0 | 2 | 1 | 1 |
DPCR1 WILD-TYPE | 101 | 24 | 151 | 114 | 29 | 14 |
P value = 0.766 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
DPCR1 MUTATED | 2 | 2 | 2 |
DPCR1 WILD-TYPE | 99 | 173 | 153 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
DPCR1 MUTATED | 2 | 2 | 2 | 0 |
DPCR1 WILD-TYPE | 116 | 113 | 161 | 35 |
P value = 0.493 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
NFAT5 MUTATED | 2 | 3 | 1 |
NFAT5 WILD-TYPE | 192 | 109 | 131 |
P value = 0.878 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
NFAT5 MUTATED | 2 | 1 | 3 |
NFAT5 WILD-TYPE | 102 | 61 | 94 |
P value = 0.246 (Fisher's exact test), Q value = 0.9
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
NFAT5 MUTATED | 0 | 2 | 1 | 0 | 1 | 1 |
NFAT5 WILD-TYPE | 97 | 55 | 66 | 67 | 71 | 40 |
P value = 0.529 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
NFAT5 MUTATED | 0 | 3 | 2 |
NFAT5 WILD-TYPE | 107 | 175 | 114 |
P value = 0.265 (Fisher's exact test), Q value = 0.93
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
NFAT5 MUTATED | 1 | 1 | 4 |
NFAT5 WILD-TYPE | 86 | 180 | 167 |
P value = 0.406 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
NFAT5 MUTATED | 4 | 0 | 1 | 1 | 0 | 0 |
NFAT5 WILD-TYPE | 98 | 25 | 150 | 115 | 30 | 15 |
P value = 0.335 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
NFAT5 MUTATED | 1 | 1 | 4 |
NFAT5 WILD-TYPE | 100 | 174 | 151 |
P value = 0.0717 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
NFAT5 MUTATED | 0 | 1 | 3 | 2 |
NFAT5 WILD-TYPE | 118 | 114 | 160 | 33 |
P value = 0.71 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
EGFR MUTATED | 4 | 2 | 1 |
EGFR WILD-TYPE | 190 | 110 | 131 |
P value = 0.681 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
EGFR MUTATED | 2 | 0 | 2 |
EGFR WILD-TYPE | 102 | 62 | 95 |
P value = 0.747 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
EGFR MUTATED | 2 | 2 | 0 | 1 | 1 | 1 |
EGFR WILD-TYPE | 95 | 55 | 67 | 66 | 71 | 40 |
P value = 0.491 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
EGFR MUTATED | 3 | 2 | 2 |
EGFR WILD-TYPE | 104 | 176 | 114 |
P value = 0.478 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
EGFR MUTATED | 0 | 3 | 4 |
EGFR WILD-TYPE | 87 | 178 | 167 |
P value = 0.942 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
EGFR MUTATED | 1 | 0 | 3 | 3 | 0 | 0 |
EGFR WILD-TYPE | 101 | 25 | 148 | 113 | 30 | 15 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
EGFR MUTATED | 1 | 3 | 2 |
EGFR WILD-TYPE | 100 | 172 | 153 |
P value = 0.0714 (Fisher's exact test), Q value = 0.5
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
EGFR MUTATED | 0 | 1 | 3 | 2 |
EGFR WILD-TYPE | 118 | 114 | 160 | 33 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
TRIM6 MUTATED | 2 | 1 | 1 |
TRIM6 WILD-TYPE | 192 | 111 | 131 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
TRIM6 MUTATED | 2 | 1 | 1 |
TRIM6 WILD-TYPE | 102 | 61 | 96 |
P value = 0.746 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
TRIM6 MUTATED | 2 | 1 | 0 | 1 | 0 | 0 |
TRIM6 WILD-TYPE | 95 | 56 | 67 | 66 | 72 | 41 |
P value = 0.0587 (Fisher's exact test), Q value = 0.47
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
TRIM6 MUTATED | 1 | 0 | 3 |
TRIM6 WILD-TYPE | 106 | 178 | 113 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
TRIM6 MUTATED | 1 | 2 | 2 |
TRIM6 WILD-TYPE | 86 | 179 | 169 |
P value = 0.173 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
TRIM6 MUTATED | 0 | 0 | 2 | 1 | 1 | 1 |
TRIM6 WILD-TYPE | 102 | 25 | 149 | 115 | 29 | 14 |
P value = 0.375 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
TRIM6 MUTATED | 0 | 2 | 3 |
TRIM6 WILD-TYPE | 101 | 173 | 152 |
P value = 0.556 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
TRIM6 MUTATED | 1 | 3 | 1 | 0 |
TRIM6 WILD-TYPE | 117 | 112 | 162 | 35 |
P value = 0.692 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
RBMX MUTATED | 2 | 0 | 2 |
RBMX WILD-TYPE | 192 | 112 | 130 |
P value = 0.618 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
RBMX MUTATED | 1 | 0 | 2 |
RBMX WILD-TYPE | 103 | 62 | 95 |
P value = 0.109 (Fisher's exact test), Q value = 0.68
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
RBMX MUTATED | 0 | 2 | 0 | 0 | 1 | 0 |
RBMX WILD-TYPE | 97 | 55 | 67 | 67 | 71 | 41 |
P value = 0.462 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
RBMX MUTATED | 0 | 1 | 2 |
RBMX WILD-TYPE | 107 | 177 | 114 |
P value = 0.428 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
RBMX MUTATED | 0 | 1 | 3 |
RBMX WILD-TYPE | 87 | 180 | 168 |
P value = 0.48 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
RBMX MUTATED | 2 | 0 | 0 | 2 | 0 | 0 |
RBMX WILD-TYPE | 100 | 25 | 151 | 114 | 30 | 15 |
P value = 0.342 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
RBMX MUTATED | 1 | 0 | 2 |
RBMX WILD-TYPE | 100 | 175 | 153 |
P value = 0.164 (Fisher's exact test), Q value = 0.75
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
RBMX MUTATED | 1 | 1 | 0 | 1 |
RBMX WILD-TYPE | 117 | 114 | 163 | 34 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
GPR172B MUTATED | 2 | 1 | 1 |
GPR172B WILD-TYPE | 192 | 111 | 131 |
P value = 0.132 (Fisher's exact test), Q value = 0.71
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
GPR172B MUTATED | 0 | 1 | 0 | 2 | 0 | 0 |
GPR172B WILD-TYPE | 97 | 56 | 67 | 65 | 72 | 41 |
P value = 0.792 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
GPR172B MUTATED | 0 | 2 | 1 |
GPR172B WILD-TYPE | 107 | 176 | 115 |
P value = 0.538 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
GPR172B MUTATED | 0 | 3 | 1 |
GPR172B WILD-TYPE | 87 | 178 | 170 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
GPR172B MUTATED | 1 | 0 | 2 | 1 | 0 | 0 |
GPR172B WILD-TYPE | 101 | 25 | 149 | 115 | 30 | 15 |
P value = 0.614 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
GPR172B MUTATED | 0 | 1 | 2 |
GPR172B WILD-TYPE | 101 | 174 | 153 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
GPR172B MUTATED | 1 | 1 | 1 | 0 |
GPR172B WILD-TYPE | 117 | 114 | 162 | 35 |
P value = 0.694 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
FGFR3 MUTATED | 2 | 0 | 2 |
FGFR3 WILD-TYPE | 192 | 112 | 130 |
P value = 0.836 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
FGFR3 MUTATED | 1 | 1 | 2 |
FGFR3 WILD-TYPE | 103 | 61 | 95 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
FGFR3 MUTATED | 1 | 0 | 0 | 1 | 1 | 0 |
FGFR3 WILD-TYPE | 96 | 57 | 67 | 66 | 71 | 41 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
FGFR3 MUTATED | 1 | 1 | 1 |
FGFR3 WILD-TYPE | 106 | 177 | 115 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
FGFR3 MUTATED | 1 | 2 | 1 |
FGFR3 WILD-TYPE | 86 | 179 | 170 |
P value = 0.479 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
FGFR3 MUTATED | 2 | 0 | 0 | 2 | 0 | 0 |
FGFR3 WILD-TYPE | 100 | 25 | 151 | 114 | 30 | 15 |
P value = 0.832 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
FGFR3 MUTATED | 1 | 1 | 2 |
FGFR3 WILD-TYPE | 100 | 174 | 153 |
P value = 0.287 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
FGFR3 MUTATED | 3 | 0 | 1 | 0 |
FGFR3 WILD-TYPE | 115 | 115 | 162 | 35 |
P value = 0.618 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
ARAP3 MUTATED | 2 | 1 | 0 |
ARAP3 WILD-TYPE | 192 | 111 | 132 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
ARAP3 MUTATED | 1 | 0 | 1 | 0 | 1 | 0 |
ARAP3 WILD-TYPE | 96 | 57 | 66 | 67 | 71 | 41 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
ARAP3 MUTATED | 1 | 1 | 1 |
ARAP3 WILD-TYPE | 106 | 177 | 115 |
P value = 0.607 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
ARAP3 MUTATED | 0 | 1 | 2 |
ARAP3 WILD-TYPE | 87 | 180 | 169 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
ARAP3 MUTATED | 1 | 0 | 1 | 1 | 0 | 0 |
ARAP3 WILD-TYPE | 101 | 25 | 150 | 115 | 30 | 15 |
P value = 0.792 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
ARAP3 MUTATED | 0 | 2 | 1 |
ARAP3 WILD-TYPE | 101 | 173 | 154 |
P value = 0.833 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
ARAP3 MUTATED | 1 | 0 | 2 | 0 |
ARAP3 WILD-TYPE | 117 | 115 | 161 | 35 |
P value = 0.585 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
OPTC MUTATED | 1 | 2 | 1 |
OPTC WILD-TYPE | 193 | 110 | 131 |
P value = 0.185 (Fisher's exact test), Q value = 0.76
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 104 | 62 | 97 |
OPTC MUTATED | 0 | 2 | 1 |
OPTC WILD-TYPE | 104 | 60 | 96 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
OPTC MUTATED | 1 | 2 | 1 |
OPTC WILD-TYPE | 86 | 179 | 170 |
P value = 0.144 (Fisher's exact test), Q value = 0.72
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
OPTC MUTATED | 2 | 0 | 0 | 1 | 0 | 1 |
OPTC WILD-TYPE | 100 | 25 | 151 | 115 | 30 | 14 |
P value = 0.832 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
OPTC MUTATED | 1 | 1 | 2 |
OPTC WILD-TYPE | 100 | 174 | 153 |
P value = 0.29 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
OPTC MUTATED | 3 | 0 | 1 | 0 |
OPTC WILD-TYPE | 115 | 115 | 162 | 35 |
P value = 0.06 (Fisher's exact test), Q value = 0.47
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 112 | 132 |
GOLGA5 MUTATED | 5 | 0 | 0 |
GOLGA5 WILD-TYPE | 189 | 112 | 132 |
P value = 0.297 (Fisher's exact test), Q value = 0.98
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 97 | 57 | 67 | 67 | 72 | 41 |
GOLGA5 MUTATED | 0 | 0 | 2 | 2 | 1 | 0 |
GOLGA5 WILD-TYPE | 97 | 57 | 65 | 65 | 71 | 41 |
P value = 0.73 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 107 | 178 | 116 |
GOLGA5 MUTATED | 2 | 2 | 1 |
GOLGA5 WILD-TYPE | 105 | 176 | 115 |
P value = 0.528 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 87 | 181 | 171 |
GOLGA5 MUTATED | 1 | 1 | 3 |
GOLGA5 WILD-TYPE | 86 | 180 | 168 |
P value = 0.601 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 102 | 25 | 151 | 116 | 30 | 15 |
GOLGA5 MUTATED | 2 | 0 | 1 | 1 | 1 | 0 |
GOLGA5 WILD-TYPE | 100 | 25 | 150 | 115 | 29 | 15 |
P value = 1 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 101 | 175 | 155 |
GOLGA5 MUTATED | 1 | 2 | 2 |
GOLGA5 WILD-TYPE | 100 | 173 | 153 |
P value = 0.517 (Fisher's exact test), Q value = 1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 118 | 115 | 163 | 35 |
GOLGA5 MUTATED | 0 | 2 | 3 | 0 |
GOLGA5 WILD-TYPE | 118 | 113 | 160 | 35 |
-
Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline
-
Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/KIRC-TP/15182431/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/KIRC-TP/15107132/KIRC-TP.transferedmergedcluster.txt
-
Number of patients = 441
-
Number of significantly mutated genes = 30
-
Number of Molecular subtypes = 12
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.