This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 82 arm-level events and 10 molecular subtypes across 90 patients, 212 significant findings detected with P value < 0.05 and Q value < 0.25.
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1q gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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2p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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2q gain cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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4q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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5p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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5q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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6p gain cnv correlated to 'CN_CNMF'.
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7p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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7q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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8p gain cnv correlated to 'CN_CNMF'.
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8q gain cnv correlated to 'CN_CNMF'.
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9p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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9q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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10p gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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10q gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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11q gain cnv correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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12p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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12q gain cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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13q gain cnv correlated to 'MRNASEQ_CNMF'.
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14q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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15q gain cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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16p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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16q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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17q gain cnv correlated to 'CN_CNMF'.
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19p gain cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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19q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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20p gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20q gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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21q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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xp gain cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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xq gain cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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1p loss cnv correlated to 'MIRSEQ_MATURE_CNMF'.
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1q loss cnv correlated to 'RPPA_CHIERARCHICAL'.
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2p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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2q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.
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3q loss cnv correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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4p loss cnv correlated to 'MRNASEQ_CNMF'.
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4q loss cnv correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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5p loss cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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8p loss cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8q loss cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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9q loss cnv correlated to 'RPPA_CHIERARCHICAL'.
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11p loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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11q loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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12p loss cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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12q loss cnv correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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13q loss cnv correlated to 'CN_CNMF'.
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14q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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15q loss cnv correlated to 'MIRSEQ_CHIERARCHICAL'.
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16p loss cnv correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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16q loss cnv correlated to 'MIRSEQ_MATURE_CNMF'.
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17p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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17q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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18p loss cnv correlated to 'CN_CNMF'.
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18q loss cnv correlated to 'CN_CNMF'.
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19p loss cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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20p loss cnv correlated to 'CN_CNMF', 'RPPA_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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22q loss cnv correlated to 'CN_CNMF'.
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xp loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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xq loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
16p gain | 49 (54%) | 41 |
1e-05 (0.00041) |
0.0105 (0.0722) |
1 (1.00) |
0.0381 (0.159) |
1e-05 (0.00041) |
1e-05 (0.00041) |
0.0465 (0.183) |
0.0255 (0.124) |
0.0299 (0.136) |
0.273 (0.502) |
20p gain | 46 (51%) | 44 |
1e-05 (0.00041) |
0.236 (0.463) |
0.00277 (0.0267) |
0.00839 (0.063) |
8e-05 (0.00177) |
0.00012 (0.00252) |
0.00479 (0.0405) |
0.0894 (0.269) |
0.00952 (0.0674) |
0.00468 (0.0403) |
10q gain | 26 (29%) | 64 |
0.00168 (0.0182) |
0.0702 (0.234) |
0.023 (0.117) |
0.0147 (0.087) |
4e-05 (0.00106) |
0.00049 (0.00731) |
0.0212 (0.111) |
0.342 (0.567) |
0.0298 (0.136) |
0.846 (0.989) |
14q gain | 21 (23%) | 69 |
0.014 (0.0855) |
0.0563 (0.203) |
0.0706 (0.235) |
0.428 (0.658) |
0.00039 (0.00615) |
0.00122 (0.0143) |
2e-05 (0.000713) |
0.00025 (0.00418) |
2e-05 (0.000713) |
1e-05 (0.00041) |
16q gain | 47 (52%) | 43 |
1e-05 (0.00041) |
0.00799 (0.0607) |
1 (1.00) |
0.324 (0.553) |
7e-05 (0.00164) |
1e-05 (0.00041) |
0.0257 (0.124) |
0.0125 (0.0808) |
0.014 (0.0855) |
0.461 (0.688) |
20q gain | 49 (54%) | 41 |
1e-05 (0.00041) |
0.0653 (0.225) |
0.0169 (0.0976) |
0.076 (0.248) |
0.00013 (0.00266) |
0.00024 (0.00418) |
0.0201 (0.108) |
0.274 (0.502) |
0.0113 (0.0757) |
0.0141 (0.0855) |
21q gain | 31 (34%) | 59 |
0.0207 (0.11) |
0.00914 (0.0663) |
0.208 (0.441) |
0.232 (0.462) |
0.0198 (0.108) |
0.00098 (0.0129) |
0.0141 (0.0855) |
0.0201 (0.108) |
0.0028 (0.0267) |
0.0849 (0.26) |
2q gain | 12 (13%) | 78 |
0.0523 (0.197) |
0.00238 (0.0238) |
0.665 (0.859) |
0.178 (0.4) |
0.0185 (0.103) |
0.00275 (0.0267) |
0.0548 (0.201) |
0.00472 (0.0403) |
0.0201 (0.108) |
0.0243 (0.12) |
9q gain | 29 (32%) | 61 |
0.00032 (0.00515) |
0.00111 (0.014) |
0.00121 (0.0143) |
0.0702 (0.234) |
0.0235 (0.118) |
0.00169 (0.0182) |
0.0331 (0.148) |
0.353 (0.578) |
0.0909 (0.27) |
0.0823 (0.254) |
10p gain | 25 (28%) | 65 |
0.00179 (0.0191) |
0.0585 (0.209) |
0.0106 (0.0722) |
0.0142 (0.0855) |
3e-05 (0.000911) |
0.00015 (0.00286) |
0.0352 (0.153) |
0.508 (0.727) |
0.0557 (0.203) |
0.454 (0.681) |
9p loss | 20 (22%) | 70 |
0.00183 (0.0192) |
0.0479 (0.187) |
0.514 (0.73) |
0.116 (0.31) |
4e-05 (0.00106) |
0.0011 (0.014) |
0.00922 (0.0663) |
0.139 (0.344) |
0.00437 (0.0385) |
0.936 (1.00) |
16p loss | 6 (7%) | 84 |
0.126 (0.324) |
0.0489 (0.189) |
0.665 (0.859) |
0.0465 (0.183) |
0.0021 (0.0213) |
0.00437 (0.0385) |
0.0124 (0.0808) |
0.443 (0.67) |
0.0003 (0.00492) |
0.465 (0.688) |
17p loss | 32 (36%) | 58 |
0.00293 (0.0273) |
0.00019 (0.00346) |
0.353 (0.578) |
0.195 (0.422) |
0.0119 (0.0791) |
0.0132 (0.0838) |
0.0795 (0.254) |
0.00307 (0.0283) |
0.0138 (0.0855) |
0.114 (0.309) |
2p gain | 13 (14%) | 77 |
0.00703 (0.0544) |
0.0013 (0.015) |
0.0959 (0.278) |
0.343 (0.568) |
0.0124 (0.0808) |
0.00025 (0.00418) |
0.372 (0.599) |
0.0193 (0.106) |
0.125 (0.324) |
0.0735 (0.242) |
4p gain | 37 (41%) | 53 |
1e-05 (0.00041) |
0.0431 (0.175) |
0.767 (0.927) |
0.464 (0.688) |
3e-05 (0.000911) |
4e-05 (0.00106) |
0.297 (0.523) |
0.00205 (0.021) |
0.344 (0.568) |
0.858 (0.995) |
4q gain | 33 (37%) | 57 |
1e-05 (0.00041) |
0.0367 (0.157) |
1 (1.00) |
0.727 (0.889) |
3e-05 (0.000911) |
1e-05 (0.00041) |
0.556 (0.761) |
0.00073 (0.00981) |
0.36 (0.585) |
0.948 (1.00) |
5p gain | 57 (63%) | 33 |
1e-05 (0.00041) |
0.0376 (0.159) |
0.12 (0.316) |
0.0333 (0.148) |
0.00058 (0.00834) |
1e-05 (0.00041) |
0.254 (0.478) |
0.227 (0.461) |
0.0736 (0.242) |
0.355 (0.58) |
9p gain | 20 (22%) | 70 |
6e-05 (0.00149) |
0.002 (0.0208) |
0.00415 (0.0374) |
0.136 (0.341) |
0.00902 (0.066) |
0.0104 (0.0722) |
0.385 (0.618) |
0.552 (0.76) |
0.465 (0.688) |
0.251 (0.476) |
8q loss | 12 (13%) | 78 |
0.00468 (0.0403) |
0.0875 (0.266) |
0.243 (0.468) |
0.0341 (0.15) |
0.0332 (0.148) |
0.126 (0.324) |
0.0785 (0.253) |
0.0343 (0.15) |
0.182 (0.405) |
0.0371 (0.158) |
5q gain | 53 (59%) | 37 |
1e-05 (0.00041) |
0.00845 (0.063) |
0.542 (0.749) |
0.147 (0.352) |
0.00067 (0.00916) |
2e-05 (0.000713) |
0.336 (0.567) |
0.136 (0.341) |
0.209 (0.441) |
0.17 (0.39) |
12q gain | 64 (71%) | 26 |
1e-05 (0.00041) |
0.312 (0.541) |
0.738 (0.898) |
0.0273 (0.129) |
0.00053 (0.00776) |
0.00015 (0.00286) |
0.237 (0.463) |
0.452 (0.681) |
0.221 (0.454) |
0.589 (0.801) |
15q gain | 11 (12%) | 79 |
0.094 (0.275) |
0.0451 (0.181) |
0.414 (0.645) |
0.847 (0.989) |
0.0107 (0.0722) |
0.00497 (0.0416) |
0.362 (0.588) |
0.00061 (0.00862) |
0.505 (0.724) |
0.256 (0.478) |
19p gain | 56 (62%) | 34 |
0.00389 (0.0354) |
0.0544 (0.201) |
0.108 (0.303) |
0.0189 (0.105) |
0.00117 (0.0141) |
0.00047 (0.00714) |
0.467 (0.688) |
0.471 (0.692) |
0.639 (0.841) |
0.215 (0.45) |
xp gain | 42 (47%) | 48 |
1e-05 (0.00041) |
0.241 (0.467) |
1 (1.00) |
0.03 (0.136) |
0.00099 (0.0129) |
0.00579 (0.0461) |
1 (1.00) |
0.0809 (0.254) |
0.429 (0.658) |
0.217 (0.452) |
xq gain | 41 (46%) | 49 |
3e-05 (0.000911) |
0.167 (0.385) |
0.768 (0.928) |
0.042 (0.171) |
0.00153 (0.0172) |
0.00892 (0.0659) |
0.798 (0.947) |
0.151 (0.356) |
0.342 (0.567) |
0.139 (0.344) |
8p loss | 16 (18%) | 74 |
0.00573 (0.0461) |
0.224 (0.459) |
0.284 (0.512) |
0.00062 (0.00862) |
0.179 (0.402) |
0.143 (0.349) |
0.18 (0.403) |
0.0239 (0.12) |
0.255 (0.478) |
0.0291 (0.134) |
17q loss | 24 (27%) | 66 |
0.0147 (0.087) |
0.00554 (0.0454) |
0.53 (0.744) |
0.515 (0.73) |
0.116 (0.31) |
0.0336 (0.148) |
0.0663 (0.227) |
0.021 (0.11) |
0.225 (0.46) |
0.107 (0.303) |
7p gain | 48 (53%) | 42 |
1e-05 (0.00041) |
0.118 (0.31) |
0.542 (0.749) |
0.0902 (0.27) |
0.00012 (0.00252) |
0.00156 (0.0173) |
0.915 (1.00) |
0.547 (0.756) |
0.278 (0.507) |
0.29 (0.516) |
7q gain | 48 (53%) | 42 |
1e-05 (0.00041) |
0.115 (0.31) |
0.542 (0.749) |
0.245 (0.47) |
1e-05 (0.00041) |
0.00015 (0.00286) |
0.916 (1.00) |
0.329 (0.557) |
0.276 (0.504) |
0.189 (0.413) |
12p gain | 64 (71%) | 26 |
1e-05 (0.00041) |
0.21 (0.441) |
0.749 (0.91) |
0.0676 (0.228) |
0.00016 (0.00298) |
4e-05 (0.00106) |
0.248 (0.474) |
0.209 (0.441) |
0.132 (0.336) |
0.25 (0.476) |
19q gain | 52 (58%) | 38 |
6e-05 (0.00149) |
0.0503 (0.193) |
0.542 (0.749) |
0.056 (0.203) |
0.00041 (0.00634) |
0.00117 (0.0141) |
0.144 (0.349) |
0.11 (0.305) |
0.522 (0.735) |
0.117 (0.31) |
2p loss | 17 (19%) | 73 |
0.00683 (0.0537) |
0.0266 (0.127) |
0.722 (0.888) |
0.656 (0.855) |
0.613 (0.826) |
0.266 (0.492) |
0.038 (0.159) |
0.77 (0.928) |
0.229 (0.462) |
0.701 (0.875) |
2q loss | 15 (17%) | 75 |
0.00529 (0.0438) |
0.00113 (0.014) |
1 (1.00) |
0.886 (1.00) |
0.113 (0.309) |
0.0534 (0.199) |
0.0314 (0.141) |
0.727 (0.889) |
0.0691 (0.232) |
0.537 (0.748) |
4q loss | 11 (12%) | 79 |
0.239 (0.464) |
0.0957 (0.278) |
0.414 (0.645) |
0.923 (1.00) |
0.00728 (0.0558) |
0.0265 (0.127) |
0.25 (0.476) |
0.813 (0.962) |
0.0128 (0.0822) |
0.902 (1.00) |
14q loss | 18 (20%) | 72 |
0.0278 (0.131) |
0.445 (0.67) |
0.722 (0.888) |
0.0537 (0.199) |
0.0177 (0.0999) |
0.0478 (0.187) |
0.414 (0.645) |
0.531 (0.745) |
0.216 (0.451) |
0.147 (0.352) |
20p loss | 9 (10%) | 81 |
0.0412 (0.169) |
0.303 (0.53) |
0.0216 (0.112) |
0.855 (0.993) |
0.212 (0.445) |
0.126 (0.324) |
0.0673 (0.228) |
0.444 (0.67) |
0.021 (0.11) |
0.44 (0.67) |
xp loss | 16 (18%) | 74 |
7e-05 (0.00164) |
0.395 (0.627) |
0.459 (0.686) |
0.094 (0.275) |
0.0226 (0.116) |
0.0286 (0.134) |
0.69 (0.874) |
0.0886 (0.268) |
0.157 (0.367) |
1 (1.00) |
xq loss | 15 (17%) | 75 |
0.00277 (0.0267) |
0.153 (0.36) |
0.135 (0.341) |
0.0956 (0.278) |
0.0178 (0.0999) |
0.016 (0.0928) |
0.505 (0.724) |
0.172 (0.393) |
0.183 (0.407) |
0.624 (0.831) |
1q gain | 8 (9%) | 82 |
0.0441 (0.178) |
0.656 (0.855) |
0.608 (0.82) |
0.557 (0.762) |
0.0462 (0.183) |
0.0785 (0.253) |
0.065 (0.225) |
0.244 (0.469) |
0.147 (0.352) |
0.85 (0.99) |
11q gain | 6 (7%) | 84 |
0.126 (0.324) |
0.173 (0.393) |
0.346 (0.57) |
0.485 (0.709) |
0.045 (0.181) |
0.0789 (0.253) |
0.188 (0.412) |
0.369 (0.596) |
0.00577 (0.0461) |
0.392 (0.626) |
3q loss | 20 (22%) | 70 |
0.167 (0.385) |
0.163 (0.381) |
0.284 (0.512) |
0.604 (0.818) |
0.0217 (0.112) |
0.029 (0.134) |
0.192 (0.417) |
0.34 (0.567) |
0.315 (0.542) |
0.117 (0.31) |
11p loss | 24 (27%) | 66 |
0.00688 (0.0537) |
0.0178 (0.0999) |
1 (1.00) |
0.798 (0.947) |
0.22 (0.454) |
0.19 (0.413) |
0.281 (0.511) |
0.891 (1.00) |
0.691 (0.874) |
1 (1.00) |
11q loss | 23 (26%) | 67 |
0.0123 (0.0808) |
0.0029 (0.0273) |
1 (1.00) |
0.395 (0.627) |
0.137 (0.343) |
0.124 (0.324) |
0.103 (0.294) |
0.827 (0.972) |
0.492 (0.714) |
0.78 (0.935) |
12q loss | 4 (4%) | 86 |
0.186 (0.409) |
0.0487 (0.189) |
1 (1.00) |
0.0822 (0.254) |
0.442 (0.67) |
0.00954 (0.0674) |
0.329 (0.557) |
0.239 (0.464) |
0.674 (0.869) |
0.113 (0.309) |
6p gain | 18 (20%) | 72 |
0.0177 (0.0999) |
0.684 (0.874) |
0.722 (0.888) |
0.873 (1.00) |
0.066 (0.226) |
0.471 (0.692) |
0.165 (0.384) |
0.056 (0.203) |
0.416 (0.645) |
0.235 (0.462) |
8p gain | 32 (36%) | 58 |
8e-05 (0.00177) |
0.144 (0.349) |
0.337 (0.567) |
0.44 (0.67) |
0.168 (0.385) |
0.145 (0.35) |
0.112 (0.308) |
0.174 (0.394) |
0.243 (0.468) |
0.515 (0.73) |
8q gain | 38 (42%) | 52 |
0.0002 (0.00357) |
0.294 (0.52) |
0.758 (0.918) |
0.467 (0.688) |
0.415 (0.645) |
0.233 (0.462) |
0.498 (0.716) |
0.262 (0.487) |
0.521 (0.735) |
0.644 (0.846) |
13q gain | 6 (7%) | 84 |
0.401 (0.634) |
0.466 (0.688) |
1 (1.00) |
0.726 (0.889) |
0.0403 (0.167) |
0.638 (0.841) |
0.141 (0.349) |
0.915 (1.00) |
0.185 (0.409) |
0.699 (0.874) |
17q gain | 7 (8%) | 83 |
0.025 (0.122) |
0.34 (0.567) |
0.233 (0.462) |
0.686 (0.874) |
0.145 (0.35) |
0.209 (0.441) |
0.793 (0.945) |
0.0611 (0.216) |
0.0611 (0.216) |
|
1p loss | 29 (32%) | 61 |
0.118 (0.31) |
0.143 (0.349) |
1 (1.00) |
0.131 (0.334) |
0.439 (0.67) |
0.0642 (0.223) |
0.467 (0.688) |
0.407 (0.641) |
0.029 (0.134) |
0.949 (1.00) |
1q loss | 20 (22%) | 70 |
0.207 (0.441) |
0.0888 (0.268) |
1 (1.00) |
0.0251 (0.122) |
0.962 (1.00) |
0.599 (0.813) |
0.37 (0.596) |
0.842 (0.986) |
0.0782 (0.253) |
0.487 (0.711) |
4p loss | 10 (11%) | 80 |
0.0974 (0.281) |
0.235 (0.462) |
0.665 (0.859) |
0.989 (1.00) |
0.023 (0.117) |
0.0811 (0.254) |
0.309 (0.537) |
0.932 (1.00) |
0.0514 (0.196) |
1 (1.00) |
5p loss | 8 (9%) | 82 |
0.287 (0.515) |
0.0502 (0.193) |
0.608 (0.82) |
0.192 (0.417) |
0.229 (0.462) |
0.00975 (0.0683) |
0.772 (0.929) |
0.298 (0.524) |
0.698 (0.874) |
1 (1.00) |
9q loss | 11 (12%) | 79 |
0.323 (0.553) |
0.935 (1.00) |
1 (1.00) |
0.0362 (0.155) |
0.0801 (0.254) |
0.323 (0.553) |
0.56 (0.763) |
0.498 (0.716) |
0.219 (0.454) |
0.805 (0.954) |
12p loss | 5 (6%) | 85 |
0.0907 (0.27) |
0.254 (0.478) |
1 (1.00) |
0.0827 (0.254) |
0.62 (0.83) |
0.0389 (0.162) |
0.102 (0.292) |
0.515 (0.73) |
0.426 (0.658) |
0.15 (0.356) |
13q loss | 39 (43%) | 51 |
0.0147 (0.087) |
0.0806 (0.254) |
0.365 (0.591) |
0.942 (1.00) |
0.626 (0.831) |
0.886 (1.00) |
0.753 (0.913) |
0.305 (0.533) |
0.615 (0.826) |
0.493 (0.715) |
15q loss | 21 (23%) | 69 |
0.0815 (0.254) |
0.416 (0.645) |
1 (1.00) |
0.51 (0.728) |
0.109 (0.304) |
0.227 (0.461) |
0.607 (0.82) |
0.0407 (0.168) |
0.29 (0.516) |
0.876 (1.00) |
16q loss | 5 (6%) | 85 |
0.218 (0.452) |
0.0777 (0.253) |
0.346 (0.57) |
0.175 (0.397) |
0.0568 (0.204) |
0.0862 (0.263) |
0.166 (0.385) |
0.306 (0.533) |
0.00137 (0.0156) |
0.698 (0.874) |
18p loss | 37 (41%) | 53 |
0.0244 (0.12) |
0.26 (0.484) |
0.554 (0.76) |
0.691 (0.874) |
0.778 (0.934) |
0.646 (0.847) |
0.694 (0.874) |
0.689 (0.874) |
0.356 (0.581) |
0.338 (0.567) |
18q loss | 35 (39%) | 55 |
0.0359 (0.155) |
0.425 (0.657) |
1 (1.00) |
0.533 (0.746) |
0.825 (0.971) |
0.935 (1.00) |
0.496 (0.716) |
0.914 (1.00) |
0.291 (0.516) |
0.352 (0.578) |
19p loss | 5 (6%) | 85 |
0.0916 (0.271) |
0.442 (0.67) |
1 (1.00) |
0.157 (0.367) |
0.0139 (0.0855) |
0.139 (0.344) |
0.715 (0.885) |
0.282 (0.511) |
0.111 (0.305) |
|
22q loss | 48 (53%) | 42 |
0.0149 (0.0873) |
0.0812 (0.254) |
0.55 (0.758) |
0.482 (0.706) |
0.621 (0.83) |
0.284 (0.512) |
0.875 (1.00) |
0.824 (0.971) |
0.681 (0.874) |
0.227 (0.461) |
1p gain | 4 (4%) | 86 |
0.186 (0.409) |
1 (1.00) |
||||||||
3p gain | 13 (14%) | 77 |
0.285 (0.512) |
0.0666 (0.227) |
0.699 (0.874) |
0.883 (1.00) |
0.329 (0.557) |
0.365 (0.591) |
0.406 (0.64) |
0.106 (0.301) |
0.637 (0.84) |
0.387 (0.619) |
3q gain | 15 (17%) | 75 |
0.401 (0.634) |
0.0519 (0.197) |
0.722 (0.888) |
0.824 (0.971) |
0.0521 (0.197) |
0.792 (0.945) |
0.655 (0.855) |
0.247 (0.474) |
0.677 (0.871) |
0.708 (0.878) |
6q gain | 16 (18%) | 74 |
0.0738 (0.242) |
0.457 (0.685) |
0.699 (0.874) |
0.685 (0.874) |
0.199 (0.428) |
0.291 (0.516) |
0.3 (0.527) |
0.197 (0.425) |
0.149 (0.355) |
0.438 (0.67) |
11p gain | 5 (6%) | 85 |
0.0917 (0.271) |
1 (1.00) |
||||||||
17p gain | 5 (6%) | 85 |
0.111 (0.305) |
0.338 (0.567) |
0.233 (0.462) |
0.688 (0.874) |
0.144 (0.349) |
0.205 (0.439) |
0.794 (0.945) |
0.0619 (0.218) |
0.063 (0.22) |
|
18p gain | 6 (7%) | 84 |
0.262 (0.487) |
0.233 (0.462) |
||||||||
18q gain | 5 (6%) | 85 |
0.495 (0.716) |
0.489 (0.711) |
||||||||
22q gain | 3 (3%) | 87 |
0.633 (0.839) |
1 (1.00) |
||||||||
3p loss | 20 (22%) | 70 |
0.256 (0.478) |
0.143 (0.349) |
0.459 (0.686) |
0.292 (0.516) |
0.11 (0.305) |
0.135 (0.341) |
0.523 (0.735) |
0.39 (0.623) |
0.686 (0.874) |
0.316 (0.543) |
5q loss | 7 (8%) | 83 |
0.898 (1.00) |
0.657 (0.855) |
0.489 (0.711) |
0.278 (0.507) |
0.134 (0.341) |
0.661 (0.859) |
0.125 (0.324) |
0.662 (0.859) |
0.85 (0.99) |
|
6p loss | 19 (21%) | 71 |
0.151 (0.356) |
0.854 (0.993) |
0.722 (0.888) |
0.232 (0.462) |
0.62 (0.83) |
0.692 (0.874) |
0.623 (0.83) |
0.1 (0.288) |
0.727 (0.889) |
0.522 (0.735) |
6q loss | 22 (24%) | 68 |
0.0625 (0.219) |
0.859 (0.995) |
0.314 (0.542) |
0.273 (0.502) |
0.634 (0.839) |
0.693 (0.874) |
0.731 (0.892) |
0.176 (0.397) |
0.555 (0.76) |
0.325 (0.553) |
7p loss | 5 (6%) | 85 |
0.394 (0.627) |
0.582 (0.793) |
0.109 (0.304) |
0.205 (0.439) |
0.908 (1.00) |
0.892 (1.00) |
0.817 (0.965) |
0.415 (0.645) |
0.834 (0.978) |
0.114 (0.309) |
7q loss | 6 (7%) | 84 |
0.313 (0.542) |
0.303 (0.53) |
0.109 (0.304) |
0.781 (0.935) |
0.622 (0.83) |
0.653 (0.855) |
1 (1.00) |
0.235 (0.462) |
0.733 (0.894) |
0.151 (0.357) |
10p loss | 12 (13%) | 78 |
0.222 (0.456) |
0.427 (0.658) |
1 (1.00) |
0.0564 (0.203) |
0.264 (0.489) |
1 (1.00) |
0.686 (0.874) |
0.708 (0.878) |
1 (1.00) |
0.328 (0.557) |
10q loss | 10 (11%) | 80 |
0.538 (0.748) |
0.626 (0.831) |
1 (1.00) |
0.239 (0.464) |
0.536 (0.748) |
1 (1.00) |
1 (1.00) |
0.704 (0.877) |
1 (1.00) |
0.289 (0.516) |
19q loss | 4 (4%) | 86 |
0.185 (0.409) |
0.708 (0.878) |
1 (1.00) |
0.775 (0.932) |
0.118 (0.31) |
0.784 (0.938) |
0.207 (0.441) |
1 (1.00) |
0.429 (0.658) |
|
20q loss | 3 (3%) | 87 |
0.182 (0.405) |
0.233 (0.462) |
||||||||
21q loss | 15 (17%) | 75 |
0.115 (0.309) |
0.339 (0.567) |
0.414 (0.645) |
0.0528 (0.198) |
0.256 (0.478) |
0.253 (0.478) |
0.222 (0.456) |
0.509 (0.727) |
0.0824 (0.254) |
0.101 (0.288) |
P value = 0.0441 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
1Q GAIN MUTATED | 7 | 0 | 1 | 0 |
1Q GAIN WILD-TYPE | 29 | 26 | 15 | 12 |
P value = 0.0462 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
1Q GAIN MUTATED | 4 | 2 | 0 | 0 |
1Q GAIN WILD-TYPE | 20 | 11 | 17 | 23 |
P value = 0.00703 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
2P GAIN MUTATED | 11 | 1 | 1 | 0 |
2P GAIN WILD-TYPE | 25 | 25 | 15 | 12 |
P value = 0.0013 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
2P GAIN MUTATED | 7 | 1 | 0 | 1 | 0 |
2P GAIN WILD-TYPE | 11 | 10 | 20 | 17 | 11 |
P value = 0.0124 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
2P GAIN MUTATED | 7 | 0 | 0 | 2 |
2P GAIN WILD-TYPE | 17 | 13 | 17 | 21 |
P value = 0.00025 (Fisher's exact test), Q value = 0.0042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
2P GAIN MUTATED | 8 | 0 | 1 | 0 |
2P GAIN WILD-TYPE | 15 | 23 | 6 | 24 |
P value = 0.0193 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
2P GAIN MUTATED | 0 | 1 | 1 | 6 | 1 |
2P GAIN WILD-TYPE | 16 | 26 | 10 | 14 | 3 |
P value = 0.00238 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
2Q GAIN MUTATED | 6 | 0 | 0 | 1 | 0 |
2Q GAIN WILD-TYPE | 12 | 11 | 20 | 17 | 11 |
P value = 0.0185 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
2Q GAIN MUTATED | 6 | 0 | 0 | 1 |
2Q GAIN WILD-TYPE | 18 | 13 | 17 | 22 |
P value = 0.00275 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
2Q GAIN MUTATED | 6 | 0 | 1 | 0 |
2Q GAIN WILD-TYPE | 17 | 23 | 6 | 24 |
P value = 0.00472 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
2Q GAIN MUTATED | 0 | 0 | 1 | 6 | 0 |
2Q GAIN WILD-TYPE | 16 | 27 | 10 | 14 | 4 |
P value = 0.0201 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
2Q GAIN MUTATED | 2 | 5 | 0 |
2Q GAIN WILD-TYPE | 26 | 17 | 27 |
P value = 0.0243 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 39 | 24 | 14 |
2Q GAIN MUTATED | 7 | 0 | 0 |
2Q GAIN WILD-TYPE | 32 | 24 | 14 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
4P GAIN MUTATED | 4 | 13 | 12 | 8 |
4P GAIN WILD-TYPE | 32 | 13 | 4 | 4 |
P value = 0.0431 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
4P GAIN MUTATED | 3 | 4 | 13 | 6 | 5 |
4P GAIN WILD-TYPE | 15 | 7 | 7 | 12 | 6 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
4P GAIN MUTATED | 1 | 8 | 11 | 10 |
4P GAIN WILD-TYPE | 23 | 5 | 6 | 13 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
4P GAIN MUTATED | 2 | 15 | 0 | 13 |
4P GAIN WILD-TYPE | 21 | 8 | 7 | 11 |
P value = 0.00205 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
4P GAIN MUTATED | 11 | 10 | 5 | 2 | 3 |
4P GAIN WILD-TYPE | 5 | 17 | 6 | 18 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
4Q GAIN MUTATED | 3 | 12 | 11 | 7 |
4Q GAIN WILD-TYPE | 33 | 14 | 5 | 5 |
P value = 0.0367 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
4Q GAIN MUTATED | 2 | 4 | 12 | 6 | 4 |
4Q GAIN WILD-TYPE | 16 | 7 | 8 | 12 | 7 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
4Q GAIN MUTATED | 0 | 8 | 9 | 10 |
4Q GAIN WILD-TYPE | 24 | 5 | 8 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
4Q GAIN MUTATED | 1 | 15 | 0 | 11 |
4Q GAIN WILD-TYPE | 22 | 8 | 7 | 13 |
P value = 0.00073 (Fisher's exact test), Q value = 0.0098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
4Q GAIN MUTATED | 10 | 9 | 5 | 1 | 3 |
4Q GAIN WILD-TYPE | 6 | 18 | 6 | 19 | 1 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
5P GAIN MUTATED | 10 | 24 | 14 | 9 |
5P GAIN WILD-TYPE | 26 | 2 | 2 | 3 |
P value = 0.0376 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
5P GAIN MUTATED | 7 | 5 | 15 | 14 | 9 |
5P GAIN WILD-TYPE | 11 | 6 | 5 | 4 | 2 |
P value = 0.0333 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
5P GAIN MUTATED | 4 | 5 | 6 | 1 | 4 | 4 | 5 | 1 |
5P GAIN WILD-TYPE | 4 | 2 | 1 | 2 | 0 | 0 | 1 | 5 |
P value = 0.00058 (Fisher's exact test), Q value = 0.0083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
5P GAIN MUTATED | 7 | 10 | 14 | 18 |
5P GAIN WILD-TYPE | 17 | 3 | 3 | 5 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
5P GAIN MUTATED | 6 | 18 | 3 | 22 |
5P GAIN WILD-TYPE | 17 | 5 | 4 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
5Q GAIN MUTATED | 8 | 21 | 14 | 10 |
5Q GAIN WILD-TYPE | 28 | 5 | 2 | 2 |
P value = 0.00845 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
5Q GAIN MUTATED | 7 | 4 | 17 | 11 | 9 |
5Q GAIN WILD-TYPE | 11 | 7 | 3 | 7 | 2 |
P value = 0.00067 (Fisher's exact test), Q value = 0.0092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
5Q GAIN MUTATED | 7 | 10 | 15 | 15 |
5Q GAIN WILD-TYPE | 17 | 3 | 2 | 8 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
5Q GAIN MUTATED | 5 | 19 | 3 | 20 |
5Q GAIN WILD-TYPE | 18 | 4 | 4 | 4 |
P value = 0.0177 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
6P GAIN MUTATED | 7 | 1 | 5 | 5 |
6P GAIN WILD-TYPE | 29 | 25 | 11 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
7P GAIN MUTATED | 8 | 20 | 12 | 8 |
7P GAIN WILD-TYPE | 28 | 6 | 4 | 4 |
P value = 0.00012 (Fisher's exact test), Q value = 0.0025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
7P GAIN MUTATED | 6 | 12 | 13 | 11 |
7P GAIN WILD-TYPE | 18 | 1 | 4 | 12 |
P value = 0.00156 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
7P GAIN MUTATED | 7 | 19 | 2 | 14 |
7P GAIN WILD-TYPE | 16 | 4 | 5 | 10 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
7Q GAIN MUTATED | 7 | 20 | 13 | 8 |
7Q GAIN WILD-TYPE | 29 | 6 | 3 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
7Q GAIN MUTATED | 5 | 13 | 13 | 11 |
7Q GAIN WILD-TYPE | 19 | 0 | 4 | 12 |
P value = 0.00015 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
7Q GAIN MUTATED | 6 | 20 | 2 | 14 |
7Q GAIN WILD-TYPE | 17 | 3 | 5 | 10 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
8P GAIN MUTATED | 5 | 18 | 4 | 5 |
8P GAIN WILD-TYPE | 31 | 8 | 12 | 7 |
P value = 2e-04 (Fisher's exact test), Q value = 0.0036
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
8Q GAIN MUTATED | 9 | 20 | 4 | 5 |
8Q GAIN WILD-TYPE | 27 | 6 | 12 | 7 |
P value = 6e-05 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
9P GAIN MUTATED | 2 | 4 | 10 | 4 |
9P GAIN WILD-TYPE | 34 | 22 | 6 | 8 |
P value = 0.002 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
9P GAIN MUTATED | 2 | 5 | 8 | 0 | 1 |
9P GAIN WILD-TYPE | 16 | 6 | 12 | 18 | 10 |
P value = 0.00415 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 23 | 22 |
9P GAIN MUTATED | 1 | 9 |
9P GAIN WILD-TYPE | 22 | 13 |
P value = 0.00902 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
9P GAIN MUTATED | 1 | 6 | 5 | 3 |
9P GAIN WILD-TYPE | 23 | 7 | 12 | 20 |
P value = 0.0104 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
9P GAIN MUTATED | 3 | 10 | 0 | 2 |
9P GAIN WILD-TYPE | 20 | 13 | 7 | 22 |
P value = 0.00032 (Fisher's exact test), Q value = 0.0051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
9Q GAIN MUTATED | 8 | 4 | 12 | 5 |
9Q GAIN WILD-TYPE | 28 | 22 | 4 | 7 |
P value = 0.00111 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
9Q GAIN MUTATED | 8 | 5 | 9 | 0 | 1 |
9Q GAIN WILD-TYPE | 10 | 6 | 11 | 18 | 10 |
P value = 0.00121 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 23 | 22 |
9Q GAIN MUTATED | 2 | 12 |
9Q GAIN WILD-TYPE | 21 | 10 |
P value = 0.0235 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
9Q GAIN MUTATED | 6 | 8 | 5 | 3 |
9Q GAIN WILD-TYPE | 18 | 5 | 12 | 20 |
P value = 0.00169 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
9Q GAIN MUTATED | 8 | 12 | 0 | 2 |
9Q GAIN WILD-TYPE | 15 | 11 | 7 | 22 |
P value = 0.0331 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
9Q GAIN MUTATED | 13 | 7 | 3 |
9Q GAIN WILD-TYPE | 23 | 9 | 23 |
P value = 0.00179 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
10P GAIN MUTATED | 7 | 5 | 11 | 2 |
10P GAIN WILD-TYPE | 29 | 21 | 5 | 10 |
P value = 0.0106 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 23 | 22 |
10P GAIN MUTATED | 3 | 11 |
10P GAIN WILD-TYPE | 20 | 11 |
P value = 0.0142 (Fisher's exact test), Q value = 0.085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
10P GAIN MUTATED | 6 | 3 | 0 | 2 | 1 | 1 | 0 | 1 |
10P GAIN WILD-TYPE | 2 | 4 | 7 | 1 | 3 | 3 | 6 | 5 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
10P GAIN MUTATED | 6 | 11 | 4 | 2 |
10P GAIN WILD-TYPE | 18 | 2 | 13 | 21 |
P value = 0.00015 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
10P GAIN MUTATED | 7 | 14 | 1 | 1 |
10P GAIN WILD-TYPE | 16 | 9 | 6 | 23 |
P value = 0.0352 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
10P GAIN MUTATED | 13 | 7 | 3 |
10P GAIN WILD-TYPE | 23 | 9 | 23 |
P value = 0.00168 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
10Q GAIN MUTATED | 9 | 5 | 11 | 1 |
10Q GAIN WILD-TYPE | 27 | 21 | 5 | 11 |
P value = 0.023 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 23 | 22 |
10Q GAIN MUTATED | 3 | 10 |
10Q GAIN WILD-TYPE | 20 | 12 |
P value = 0.0147 (Fisher's exact test), Q value = 0.087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
10Q GAIN MUTATED | 6 | 2 | 0 | 2 | 1 | 1 | 0 | 1 |
10Q GAIN WILD-TYPE | 2 | 5 | 7 | 1 | 3 | 3 | 6 | 5 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
10Q GAIN MUTATED | 7 | 11 | 3 | 2 |
10Q GAIN WILD-TYPE | 17 | 2 | 14 | 21 |
P value = 0.00049 (Fisher's exact test), Q value = 0.0073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
10Q GAIN MUTATED | 8 | 13 | 1 | 1 |
10Q GAIN WILD-TYPE | 15 | 10 | 6 | 23 |
P value = 0.0212 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
10Q GAIN MUTATED | 12 | 8 | 3 |
10Q GAIN WILD-TYPE | 24 | 8 | 23 |
P value = 0.0298 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
10Q GAIN MUTATED | 8 | 11 | 4 |
10Q GAIN WILD-TYPE | 20 | 11 | 23 |
P value = 0.045 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
11Q GAIN MUTATED | 4 | 0 | 0 | 0 |
11Q GAIN WILD-TYPE | 20 | 13 | 17 | 23 |
P value = 0.00577 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
11Q GAIN MUTATED | 0 | 4 | 0 |
11Q GAIN WILD-TYPE | 28 | 18 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
12P GAIN MUTATED | 14 | 26 | 15 | 9 |
12P GAIN WILD-TYPE | 22 | 0 | 1 | 3 |
P value = 0.00016 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
12P GAIN MUTATED | 9 | 13 | 14 | 18 |
12P GAIN WILD-TYPE | 15 | 0 | 3 | 5 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
12P GAIN MUTATED | 10 | 20 | 2 | 22 |
12P GAIN WILD-TYPE | 13 | 3 | 5 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
12Q GAIN MUTATED | 13 | 26 | 16 | 9 |
12Q GAIN WILD-TYPE | 23 | 0 | 0 | 3 |
P value = 0.0273 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
12Q GAIN MUTATED | 7 | 6 | 6 | 3 | 2 | 4 | 5 | 1 |
12Q GAIN WILD-TYPE | 1 | 1 | 1 | 0 | 2 | 0 | 1 | 5 |
P value = 0.00053 (Fisher's exact test), Q value = 0.0078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
12Q GAIN MUTATED | 10 | 13 | 14 | 18 |
12Q GAIN WILD-TYPE | 14 | 0 | 3 | 5 |
P value = 0.00015 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
12Q GAIN MUTATED | 11 | 20 | 2 | 22 |
12Q GAIN WILD-TYPE | 12 | 3 | 5 | 2 |
P value = 0.0403 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
13Q GAIN MUTATED | 1 | 1 | 4 | 0 |
13Q GAIN WILD-TYPE | 23 | 12 | 13 | 23 |
P value = 0.014 (Fisher's exact test), Q value = 0.085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
14Q GAIN MUTATED | 6 | 4 | 9 | 2 |
14Q GAIN WILD-TYPE | 30 | 22 | 7 | 10 |
P value = 0.00039 (Fisher's exact test), Q value = 0.0061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
14Q GAIN MUTATED | 2 | 6 | 8 | 1 |
14Q GAIN WILD-TYPE | 22 | 7 | 9 | 22 |
P value = 0.00122 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
14Q GAIN MUTATED | 3 | 12 | 0 | 2 |
14Q GAIN WILD-TYPE | 20 | 11 | 7 | 22 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
14Q GAIN MUTATED | 17 | 0 | 1 |
14Q GAIN WILD-TYPE | 19 | 16 | 25 |
P value = 0.00025 (Fisher's exact test), Q value = 0.0042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
14Q GAIN MUTATED | 7 | 0 | 3 | 5 | 3 |
14Q GAIN WILD-TYPE | 9 | 27 | 8 | 15 | 1 |
P value = 2e-05 (Fisher's exact test), Q value = 0.00071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
14Q GAIN MUTATED | 14 | 2 | 1 |
14Q GAIN WILD-TYPE | 14 | 20 | 26 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 39 | 24 | 14 |
14Q GAIN MUTATED | 17 | 0 | 0 |
14Q GAIN WILD-TYPE | 22 | 24 | 14 |
P value = 0.0451 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
15Q GAIN MUTATED | 0 | 2 | 6 | 1 | 1 |
15Q GAIN WILD-TYPE | 18 | 9 | 14 | 17 | 10 |
P value = 0.0107 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
15Q GAIN MUTATED | 0 | 3 | 5 | 2 |
15Q GAIN WILD-TYPE | 24 | 10 | 12 | 21 |
P value = 0.00497 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
15Q GAIN MUTATED | 1 | 8 | 0 | 1 |
15Q GAIN WILD-TYPE | 22 | 15 | 7 | 23 |
P value = 0.00061 (Fisher's exact test), Q value = 0.0086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
15Q GAIN MUTATED | 6 | 1 | 1 | 0 | 2 |
15Q GAIN WILD-TYPE | 10 | 26 | 10 | 20 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
16P GAIN MUTATED | 6 | 26 | 11 | 6 |
16P GAIN WILD-TYPE | 30 | 0 | 5 | 6 |
P value = 0.0105 (Fisher's exact test), Q value = 0.072
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
16P GAIN MUTATED | 4 | 6 | 16 | 10 | 6 |
16P GAIN WILD-TYPE | 14 | 5 | 4 | 8 | 5 |
P value = 0.0381 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
16P GAIN MUTATED | 3 | 7 | 4 | 0 | 1 | 3 | 4 | 2 |
16P GAIN WILD-TYPE | 5 | 0 | 3 | 3 | 3 | 1 | 2 | 4 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
16P GAIN MUTATED | 3 | 10 | 13 | 16 |
16P GAIN WILD-TYPE | 21 | 3 | 4 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
16P GAIN MUTATED | 4 | 20 | 0 | 18 |
16P GAIN WILD-TYPE | 19 | 3 | 7 | 6 |
P value = 0.0465 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
16P GAIN MUTATED | 17 | 6 | 19 |
16P GAIN WILD-TYPE | 19 | 10 | 7 |
P value = 0.0255 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
16P GAIN MUTATED | 12 | 16 | 6 | 5 | 3 |
16P GAIN WILD-TYPE | 4 | 11 | 5 | 15 | 1 |
P value = 0.0299 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
16P GAIN MUTATED | 15 | 7 | 19 |
16P GAIN WILD-TYPE | 13 | 15 | 8 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
16Q GAIN MUTATED | 5 | 25 | 11 | 6 |
16Q GAIN WILD-TYPE | 31 | 1 | 5 | 6 |
P value = 0.00799 (Fisher's exact test), Q value = 0.061
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
16Q GAIN MUTATED | 4 | 5 | 16 | 11 | 6 |
16Q GAIN WILD-TYPE | 14 | 6 | 4 | 7 | 5 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
16Q GAIN MUTATED | 4 | 9 | 13 | 16 |
16Q GAIN WILD-TYPE | 20 | 4 | 4 | 7 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
16Q GAIN MUTATED | 4 | 19 | 1 | 18 |
16Q GAIN WILD-TYPE | 19 | 4 | 6 | 6 |
P value = 0.0257 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
16Q GAIN MUTATED | 18 | 5 | 19 |
16Q GAIN WILD-TYPE | 18 | 11 | 7 |
P value = 0.0125 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
16Q GAIN MUTATED | 13 | 16 | 6 | 5 | 2 |
16Q GAIN WILD-TYPE | 3 | 11 | 5 | 15 | 2 |
P value = 0.014 (Fisher's exact test), Q value = 0.085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
16Q GAIN MUTATED | 17 | 6 | 18 |
16Q GAIN WILD-TYPE | 11 | 16 | 9 |
P value = 0.025 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
17Q GAIN MUTATED | 4 | 0 | 0 | 3 |
17Q GAIN WILD-TYPE | 32 | 26 | 16 | 9 |
P value = 0.00389 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
19P GAIN MUTATED | 16 | 16 | 15 | 9 |
19P GAIN WILD-TYPE | 20 | 10 | 1 | 3 |
P value = 0.0189 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
19P GAIN MUTATED | 8 | 7 | 4 | 2 | 1 | 3 | 4 | 2 |
19P GAIN WILD-TYPE | 0 | 0 | 3 | 1 | 3 | 1 | 2 | 4 |
P value = 0.00117 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
19P GAIN MUTATED | 11 | 13 | 13 | 11 |
19P GAIN WILD-TYPE | 13 | 0 | 4 | 12 |
P value = 0.00047 (Fisher's exact test), Q value = 0.0071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
19P GAIN MUTATED | 14 | 21 | 1 | 12 |
19P GAIN WILD-TYPE | 9 | 2 | 6 | 12 |
P value = 6e-05 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
19Q GAIN MUTATED | 13 | 16 | 16 | 7 |
19Q GAIN WILD-TYPE | 23 | 10 | 0 | 5 |
P value = 0.00041 (Fisher's exact test), Q value = 0.0063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
19Q GAIN MUTATED | 10 | 13 | 12 | 9 |
19Q GAIN WILD-TYPE | 14 | 0 | 5 | 14 |
P value = 0.00117 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
19Q GAIN MUTATED | 12 | 20 | 1 | 11 |
19Q GAIN WILD-TYPE | 11 | 3 | 6 | 13 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
20P GAIN MUTATED | 6 | 22 | 11 | 7 |
20P GAIN WILD-TYPE | 30 | 4 | 5 | 5 |
P value = 0.00277 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 23 | 22 |
20P GAIN MUTATED | 17 | 6 |
20P GAIN WILD-TYPE | 6 | 16 |
P value = 0.00839 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
20P GAIN MUTATED | 5 | 2 | 6 | 1 | 1 | 4 | 4 | 0 |
20P GAIN WILD-TYPE | 3 | 5 | 1 | 2 | 3 | 0 | 2 | 6 |
P value = 8e-05 (Fisher's exact test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
20P GAIN MUTATED | 4 | 9 | 8 | 18 |
20P GAIN WILD-TYPE | 20 | 4 | 9 | 5 |
P value = 0.00012 (Fisher's exact test), Q value = 0.0025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
20P GAIN MUTATED | 6 | 12 | 1 | 20 |
20P GAIN WILD-TYPE | 17 | 11 | 6 | 4 |
P value = 0.00479 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
20P GAIN MUTATED | 13 | 7 | 20 |
20P GAIN WILD-TYPE | 23 | 9 | 6 |
P value = 0.00952 (Fisher's exact test), Q value = 0.067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
20P GAIN MUTATED | 10 | 9 | 20 |
20P GAIN WILD-TYPE | 18 | 13 | 7 |
P value = 0.00468 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 39 | 24 | 14 |
20P GAIN MUTATED | 13 | 18 | 8 |
20P GAIN WILD-TYPE | 26 | 6 | 6 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
20Q GAIN MUTATED | 8 | 22 | 12 | 7 |
20Q GAIN WILD-TYPE | 28 | 4 | 4 | 5 |
P value = 0.0169 (Fisher's exact test), Q value = 0.098
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 23 | 22 |
20Q GAIN MUTATED | 17 | 8 |
20Q GAIN WILD-TYPE | 6 | 14 |
P value = 0.00013 (Fisher's exact test), Q value = 0.0027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
20Q GAIN MUTATED | 5 | 11 | 8 | 18 |
20Q GAIN WILD-TYPE | 19 | 2 | 9 | 5 |
P value = 0.00024 (Fisher's exact test), Q value = 0.0042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
20Q GAIN MUTATED | 6 | 14 | 2 | 20 |
20Q GAIN WILD-TYPE | 17 | 9 | 5 | 4 |
P value = 0.0201 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
20Q GAIN MUTATED | 15 | 8 | 20 |
20Q GAIN WILD-TYPE | 21 | 8 | 6 |
P value = 0.0113 (Fisher's exact test), Q value = 0.076
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
20Q GAIN MUTATED | 12 | 9 | 21 |
20Q GAIN WILD-TYPE | 16 | 13 | 6 |
P value = 0.0141 (Fisher's exact test), Q value = 0.085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 39 | 24 | 14 |
20Q GAIN MUTATED | 15 | 18 | 9 |
20Q GAIN WILD-TYPE | 24 | 6 | 5 |
P value = 0.0207 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
21Q GAIN MUTATED | 9 | 8 | 11 | 3 |
21Q GAIN WILD-TYPE | 27 | 18 | 5 | 9 |
P value = 0.00914 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
21Q GAIN MUTATED | 8 | 2 | 12 | 2 | 2 |
21Q GAIN WILD-TYPE | 10 | 9 | 8 | 16 | 9 |
P value = 0.0198 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
21Q GAIN MUTATED | 7 | 9 | 6 | 4 |
21Q GAIN WILD-TYPE | 17 | 4 | 11 | 19 |
P value = 0.00098 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
21Q GAIN MUTATED | 7 | 15 | 1 | 3 |
21Q GAIN WILD-TYPE | 16 | 8 | 6 | 21 |
P value = 0.0141 (Fisher's exact test), Q value = 0.085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
21Q GAIN MUTATED | 18 | 4 | 4 |
21Q GAIN WILD-TYPE | 18 | 12 | 22 |
P value = 0.0201 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
21Q GAIN MUTATED | 10 | 4 | 4 | 6 | 2 |
21Q GAIN WILD-TYPE | 6 | 23 | 7 | 14 | 2 |
P value = 0.0028 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
21Q GAIN MUTATED | 15 | 7 | 3 |
21Q GAIN WILD-TYPE | 13 | 15 | 24 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
XP GAIN MUTATED | 6 | 22 | 9 | 5 |
XP GAIN WILD-TYPE | 30 | 4 | 7 | 7 |
P value = 0.03 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
XP GAIN MUTATED | 6 | 5 | 5 | 0 | 2 | 3 | 4 | 0 |
XP GAIN WILD-TYPE | 2 | 2 | 2 | 3 | 2 | 1 | 2 | 6 |
P value = 0.00099 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
XP GAIN MUTATED | 4 | 10 | 11 | 12 |
XP GAIN WILD-TYPE | 20 | 3 | 6 | 11 |
P value = 0.00579 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
XP GAIN MUTATED | 5 | 14 | 2 | 16 |
XP GAIN WILD-TYPE | 18 | 9 | 5 | 8 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
XQ GAIN MUTATED | 7 | 21 | 8 | 5 |
XQ GAIN WILD-TYPE | 29 | 5 | 8 | 7 |
P value = 0.042 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
XQ GAIN MUTATED | 6 | 4 | 5 | 0 | 2 | 3 | 4 | 0 |
XQ GAIN WILD-TYPE | 2 | 3 | 2 | 3 | 2 | 1 | 2 | 6 |
P value = 0.00153 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
XQ GAIN MUTATED | 4 | 10 | 10 | 12 |
XQ GAIN WILD-TYPE | 20 | 3 | 7 | 11 |
P value = 0.00892 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
XQ GAIN MUTATED | 5 | 13 | 2 | 16 |
XQ GAIN WILD-TYPE | 18 | 10 | 5 | 8 |
P value = 0.029 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
1P LOSS MUTATED | 4 | 10 | 11 |
1P LOSS WILD-TYPE | 24 | 12 | 16 |
P value = 0.0251 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
1Q LOSS MUTATED | 0 | 0 | 0 | 2 | 1 | 0 | 2 | 2 |
1Q LOSS WILD-TYPE | 8 | 7 | 7 | 1 | 3 | 4 | 4 | 4 |
P value = 0.00683 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
2P LOSS MUTATED | 4 | 2 | 5 | 6 |
2P LOSS WILD-TYPE | 32 | 24 | 11 | 6 |
P value = 0.0266 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
2P LOSS MUTATED | 1 | 1 | 7 | 2 | 5 |
2P LOSS WILD-TYPE | 17 | 10 | 13 | 16 | 6 |
P value = 0.038 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
2P LOSS MUTATED | 8 | 0 | 8 |
2P LOSS WILD-TYPE | 28 | 16 | 18 |
P value = 0.00529 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
2Q LOSS MUTATED | 3 | 2 | 4 | 6 |
2Q LOSS WILD-TYPE | 33 | 24 | 12 | 6 |
P value = 0.00113 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
2Q LOSS MUTATED | 0 | 0 | 7 | 2 | 5 |
2Q LOSS WILD-TYPE | 18 | 11 | 13 | 16 | 6 |
P value = 0.0314 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
2Q LOSS MUTATED | 6 | 0 | 8 |
2Q LOSS WILD-TYPE | 30 | 16 | 18 |
P value = 0.0217 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
3Q LOSS MUTATED | 7 | 0 | 7 | 3 |
3Q LOSS WILD-TYPE | 17 | 13 | 10 | 20 |
P value = 0.029 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
3Q LOSS MUTATED | 8 | 7 | 1 | 1 |
3Q LOSS WILD-TYPE | 15 | 16 | 6 | 23 |
P value = 0.023 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
4P LOSS MUTATED | 7 | 0 | 1 | 1 |
4P LOSS WILD-TYPE | 17 | 13 | 16 | 22 |
P value = 0.00728 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
4Q LOSS MUTATED | 8 | 0 | 1 | 1 |
4Q LOSS WILD-TYPE | 16 | 13 | 16 | 22 |
P value = 0.0265 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
4Q LOSS MUTATED | 7 | 1 | 1 | 1 |
4Q LOSS WILD-TYPE | 16 | 22 | 6 | 23 |
P value = 0.0128 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
4Q LOSS MUTATED | 2 | 7 | 1 |
4Q LOSS WILD-TYPE | 26 | 15 | 26 |
P value = 0.00975 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
5P LOSS MUTATED | 6 | 1 | 0 | 0 |
5P LOSS WILD-TYPE | 17 | 22 | 7 | 24 |
P value = 0.00573 (Fisher's exact test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
8P LOSS MUTATED | 8 | 0 | 6 | 2 |
8P LOSS WILD-TYPE | 28 | 26 | 10 | 10 |
P value = 0.00062 (Fisher's exact test), Q value = 0.0086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
8P LOSS MUTATED | 1 | 1 | 0 | 2 | 0 | 0 | 0 | 5 |
8P LOSS WILD-TYPE | 7 | 6 | 7 | 1 | 4 | 4 | 6 | 1 |
P value = 0.0239 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
8P LOSS MUTATED | 2 | 2 | 1 | 5 | 3 |
8P LOSS WILD-TYPE | 14 | 25 | 10 | 15 | 1 |
P value = 0.0291 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 39 | 24 | 14 |
8P LOSS MUTATED | 11 | 1 | 1 |
8P LOSS WILD-TYPE | 28 | 23 | 13 |
P value = 0.00468 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
8Q LOSS MUTATED | 4 | 0 | 6 | 2 |
8Q LOSS WILD-TYPE | 32 | 26 | 10 | 10 |
P value = 0.0341 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
8Q LOSS MUTATED | 1 | 1 | 0 | 2 | 0 | 0 | 0 | 3 |
8Q LOSS WILD-TYPE | 7 | 6 | 7 | 1 | 4 | 4 | 6 | 3 |
P value = 0.0332 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
8Q LOSS MUTATED | 3 | 2 | 5 | 0 |
8Q LOSS WILD-TYPE | 21 | 11 | 12 | 23 |
P value = 0.0343 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
8Q LOSS MUTATED | 1 | 1 | 1 | 5 | 2 |
8Q LOSS WILD-TYPE | 15 | 26 | 10 | 15 | 2 |
P value = 0.0371 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 39 | 24 | 14 |
8Q LOSS MUTATED | 9 | 1 | 0 |
8Q LOSS WILD-TYPE | 30 | 23 | 14 |
P value = 0.00183 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
9P LOSS MUTATED | 15 | 2 | 3 | 0 |
9P LOSS WILD-TYPE | 21 | 24 | 13 | 12 |
P value = 0.0479 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
9P LOSS MUTATED | 9 | 3 | 2 | 4 | 1 |
9P LOSS WILD-TYPE | 9 | 8 | 18 | 14 | 10 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
9P LOSS MUTATED | 14 | 1 | 3 | 1 |
9P LOSS WILD-TYPE | 10 | 12 | 14 | 22 |
P value = 0.0011 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
9P LOSS MUTATED | 12 | 4 | 2 | 1 |
9P LOSS WILD-TYPE | 11 | 19 | 5 | 23 |
P value = 0.00922 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
9P LOSS MUTATED | 9 | 8 | 2 |
9P LOSS WILD-TYPE | 27 | 8 | 24 |
P value = 0.00437 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
9P LOSS MUTATED | 4 | 11 | 3 |
9P LOSS WILD-TYPE | 24 | 11 | 24 |
P value = 0.0362 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
9Q LOSS MUTATED | 0 | 0 | 0 | 0 | 1 | 0 | 3 | 1 |
9Q LOSS WILD-TYPE | 8 | 7 | 7 | 3 | 3 | 4 | 3 | 5 |
P value = 0.00688 (Fisher's exact test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
11P LOSS MUTATED | 7 | 3 | 7 | 7 |
11P LOSS WILD-TYPE | 29 | 23 | 9 | 5 |
P value = 0.0178 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
11P LOSS MUTATED | 4 | 1 | 11 | 2 | 4 |
11P LOSS WILD-TYPE | 14 | 10 | 9 | 16 | 7 |
P value = 0.0123 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
11Q LOSS MUTATED | 7 | 3 | 6 | 7 |
11Q LOSS WILD-TYPE | 29 | 23 | 10 | 5 |
P value = 0.0029 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
11Q LOSS MUTATED | 2 | 1 | 11 | 2 | 5 |
11Q LOSS WILD-TYPE | 16 | 10 | 9 | 16 | 6 |
P value = 0.0389 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
12P LOSS MUTATED | 2 | 1 | 2 | 0 |
12P LOSS WILD-TYPE | 21 | 22 | 5 | 24 |
P value = 0.0487 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
12Q LOSS MUTATED | 0 | 2 | 0 | 2 | 0 |
12Q LOSS WILD-TYPE | 18 | 9 | 20 | 16 | 11 |
P value = 0.00954 (Fisher's exact test), Q value = 0.067
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
12Q LOSS MUTATED | 2 | 0 | 2 | 0 |
12Q LOSS WILD-TYPE | 21 | 23 | 5 | 24 |
P value = 0.0147 (Fisher's exact test), Q value = 0.087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
13Q LOSS MUTATED | 19 | 5 | 7 | 8 |
13Q LOSS WILD-TYPE | 17 | 21 | 9 | 4 |
P value = 0.0278 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
14Q LOSS MUTATED | 8 | 3 | 1 | 6 |
14Q LOSS WILD-TYPE | 28 | 23 | 15 | 6 |
P value = 0.0177 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
14Q LOSS MUTATED | 7 | 0 | 1 | 8 |
14Q LOSS WILD-TYPE | 17 | 13 | 16 | 15 |
P value = 0.0478 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
14Q LOSS MUTATED | 5 | 1 | 3 | 7 |
14Q LOSS WILD-TYPE | 18 | 22 | 4 | 17 |
P value = 0.0407 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
15Q LOSS MUTATED | 0 | 7 | 2 | 8 | 1 |
15Q LOSS WILD-TYPE | 16 | 20 | 9 | 12 | 3 |
P value = 0.0489 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
16P LOSS MUTATED | 4 | 0 | 0 | 2 | 0 |
16P LOSS WILD-TYPE | 14 | 11 | 20 | 16 | 11 |
P value = 0.0465 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 |
---|---|---|---|---|---|---|---|---|
ALL | 8 | 7 | 7 | 3 | 4 | 4 | 6 | 6 |
16P LOSS MUTATED | 2 | 0 | 0 | 1 | 2 | 0 | 0 | 0 |
16P LOSS WILD-TYPE | 6 | 7 | 7 | 2 | 2 | 4 | 6 | 6 |
P value = 0.0021 (Fisher's exact test), Q value = 0.021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
16P LOSS MUTATED | 6 | 0 | 0 | 0 |
16P LOSS WILD-TYPE | 18 | 13 | 17 | 23 |
P value = 0.00437 (Fisher's exact test), Q value = 0.039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
16P LOSS MUTATED | 4 | 0 | 2 | 0 |
16P LOSS WILD-TYPE | 19 | 23 | 5 | 24 |
P value = 0.0124 (Fisher's exact test), Q value = 0.081
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 36 | 16 | 26 |
16P LOSS MUTATED | 2 | 4 | 0 |
16P LOSS WILD-TYPE | 34 | 12 | 26 |
P value = 3e-04 (Fisher's exact test), Q value = 0.0049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
16P LOSS MUTATED | 0 | 6 | 0 |
16P LOSS WILD-TYPE | 28 | 16 | 27 |
P value = 0.00137 (Fisher's exact test), Q value = 0.016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
16Q LOSS MUTATED | 0 | 5 | 0 |
16Q LOSS WILD-TYPE | 28 | 17 | 27 |
P value = 0.00293 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
17P LOSS MUTATED | 16 | 3 | 10 | 3 |
17P LOSS WILD-TYPE | 20 | 23 | 6 | 9 |
P value = 0.00019 (Fisher's exact test), Q value = 0.0035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
17P LOSS MUTATED | 11 | 0 | 12 | 4 | 1 |
17P LOSS WILD-TYPE | 7 | 11 | 8 | 14 | 10 |
P value = 0.0119 (Fisher's exact test), Q value = 0.079
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
17P LOSS MUTATED | 14 | 4 | 7 | 3 |
17P LOSS WILD-TYPE | 10 | 9 | 10 | 20 |
P value = 0.0132 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
17P LOSS MUTATED | 12 | 11 | 2 | 3 |
17P LOSS WILD-TYPE | 11 | 12 | 5 | 21 |
P value = 0.00307 (Fisher's exact test), Q value = 0.028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
17P LOSS MUTATED | 5 | 8 | 0 | 13 | 2 |
17P LOSS WILD-TYPE | 11 | 19 | 11 | 7 | 2 |
P value = 0.0138 (Fisher's exact test), Q value = 0.085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
17P LOSS MUTATED | 9 | 13 | 5 |
17P LOSS WILD-TYPE | 19 | 9 | 22 |
P value = 0.0147 (Fisher's exact test), Q value = 0.087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
17Q LOSS MUTATED | 10 | 3 | 9 | 2 |
17Q LOSS WILD-TYPE | 26 | 23 | 7 | 10 |
P value = 0.00554 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 18 | 11 | 20 | 18 | 11 |
17Q LOSS MUTATED | 7 | 1 | 12 | 3 | 1 |
17Q LOSS WILD-TYPE | 11 | 10 | 8 | 15 | 10 |
P value = 0.0336 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
17Q LOSS MUTATED | 9 | 11 | 1 | 3 |
17Q LOSS WILD-TYPE | 14 | 12 | 6 | 21 |
P value = 0.021 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 16 | 27 | 11 | 20 | 4 |
17Q LOSS MUTATED | 6 | 6 | 0 | 10 | 2 |
17Q LOSS WILD-TYPE | 10 | 21 | 11 | 10 | 2 |
P value = 0.0244 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
18P LOSS MUTATED | 16 | 5 | 8 | 8 |
18P LOSS WILD-TYPE | 20 | 21 | 8 | 4 |
P value = 0.0359 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
18Q LOSS MUTATED | 15 | 5 | 7 | 8 |
18Q LOSS WILD-TYPE | 21 | 21 | 9 | 4 |
P value = 0.0139 (Fisher's exact test), Q value = 0.085
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
19P LOSS MUTATED | 1 | 0 | 2 | 0 |
19P LOSS WILD-TYPE | 22 | 23 | 5 | 24 |
P value = 0.0412 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
20P LOSS MUTATED | 6 | 0 | 3 | 0 |
20P LOSS WILD-TYPE | 30 | 26 | 13 | 12 |
P value = 0.0216 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 |
---|---|---|
ALL | 23 | 22 |
20P LOSS MUTATED | 0 | 5 |
20P LOSS WILD-TYPE | 23 | 17 |
P value = 0.021 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 28 | 22 | 27 |
20P LOSS MUTATED | 2 | 5 | 0 |
20P LOSS WILD-TYPE | 26 | 17 | 27 |
P value = 0.0149 (Fisher's exact test), Q value = 0.087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
22Q LOSS MUTATED | 22 | 7 | 11 | 8 |
22Q LOSS WILD-TYPE | 14 | 19 | 5 | 4 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
XP LOSS MUTATED | 14 | 0 | 0 | 2 |
XP LOSS WILD-TYPE | 22 | 26 | 16 | 10 |
P value = 0.0226 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
XP LOSS MUTATED | 9 | 0 | 2 | 3 |
XP LOSS WILD-TYPE | 15 | 13 | 15 | 20 |
P value = 0.0286 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
XP LOSS MUTATED | 9 | 2 | 1 | 2 |
XP LOSS WILD-TYPE | 14 | 21 | 6 | 22 |
P value = 0.00277 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 36 | 26 | 16 | 12 |
XQ LOSS MUTATED | 12 | 1 | 0 | 2 |
XQ LOSS WILD-TYPE | 24 | 25 | 16 | 10 |
P value = 0.0178 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 24 | 13 | 17 | 23 |
XQ LOSS MUTATED | 9 | 0 | 3 | 2 |
XQ LOSS WILD-TYPE | 15 | 13 | 14 | 21 |
P value = 0.016 (Fisher's exact test), Q value = 0.093
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 23 | 23 | 7 | 24 |
XQ LOSS MUTATED | 9 | 3 | 1 | 1 |
XQ LOSS WILD-TYPE | 14 | 20 | 6 | 23 |
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/ACC-TP/19778621/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/ACC-TP/20124001/ACC-TP.transferedmergedcluster.txt
-
Number of patients = 90
-
Number of significantly arm-level cnvs = 82
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.